AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065342


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065342.t1 MTR_2g043230 98.031 254 5 0 1 254 1 254 0.0 501
MS.gene065342.t1 MTR_4g124910 74.016 254 65 1 1 254 1 253 4.60e-138 388
MS.gene065342.t1 MTR_3g110030 38.947 95 56 2 159 253 3 95 5.58e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065342.t1 AT5G20720 70.703 256 70 2 1 254 1 253 4.65e-128 363
MS.gene065342.t1 AT5G20720 70.703 256 70 2 1 254 1 253 4.65e-128 363
MS.gene065342.t1 AT5G20720 70.703 256 70 2 1 254 1 253 4.65e-128 363
MS.gene065342.t1 AT5G20720 70.703 256 70 2 1 254 1 253 4.65e-128 363

Find 71 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTCATTACCAGCGTATT+TGG 0.227055 2.1:-51575009 None:intergenic
TTATCAGAACTCTATCATTC+AGG 0.266283 2.1:-51574076 None:intergenic
TGTCATGGCTGTACTCTCTT+AGG 0.332407 2.1:+51575076 MS.gene065342:CDS
TTCATTCTGCTCGACATGTT+AGG 0.390168 2.1:+51572526 MS.gene065342:CDS
GTACACTGCAATCAAGCCTT+TGG 0.401887 2.1:+51573647 MS.gene065342:intron
CAATCAAGCCTTTGGGTGAC+AGG 0.402537 2.1:+51573655 MS.gene065342:CDS
GGCTTTGTTTGAGCACTTGA+TGG 0.405445 2.1:-51573732 None:intergenic
AAGCTTACTGTTCCAAATGA+AGG 0.410647 2.1:-51574596 None:intergenic
CTTTGATATCATCAGTTTCA+AGG 0.418776 2.1:-51574043 None:intergenic
ACCAAGGAGAAACCTTCATT+TGG 0.419164 2.1:+51574584 MS.gene065342:CDS
CAGGTGGTGGCAGTTGGTCC+CGG 0.425166 2.1:+51574921 MS.gene065342:intron
TCCTGCTCGTAGGTCCTTCA+AGG 0.426073 2.1:+51572557 MS.gene065342:CDS
GAATGATAGAGTTCTGATAA+AGG 0.428615 2.1:+51574079 MS.gene065342:CDS
GAATGAAACTGAACACTTGA+TGG 0.432793 2.1:-51572510 None:intergenic
CCTTCACACTAATTTCAACT+TGG 0.433049 2.1:-51573806 None:intergenic
ATACGCTGGTAATGACTTCA+AGG 0.442105 2.1:+51575013 MS.gene065342:CDS
TGGTCCCGGGCTTGTGGATG+AGG 0.443053 2.1:+51574935 MS.gene065342:CDS
GCCTTCCTCATCCACAAGCC+CGG 0.445614 2.1:-51574940 None:intergenic
AGGAGCGTTGCATCCTTTGA+AGG 0.448441 2.1:+51572480 MS.gene065342:CDS
TCCAAATGAAGGTTTCTCCT+TGG 0.449870 2.1:-51574585 None:intergenic
GGCAGTTGGTCCCGGGCTTG+TGG 0.451200 2.1:+51574929 MS.gene065342:CDS
AAACCGTTGACTGTTGCTCC+TGG 0.454654 2.1:+51574969 MS.gene065342:CDS
TATCAGAACTCTATCATTCA+GGG 0.457828 2.1:-51574075 None:intergenic
AATGACTTCAAGGGCAAAGA+TGG 0.468491 2.1:+51575023 MS.gene065342:CDS
TTTGACAATCAAAGCCTTGA+AGG 0.489756 2.1:-51572571 None:intergenic
TACACTGCAATCAAGCCTTT+GGG 0.491403 2.1:+51573648 MS.gene065342:CDS
ATATATGCTGCAGATTGAAA+AGG 0.493775 2.1:+51574520 MS.gene065342:intron
CTGAAGGATGATGACATTGT+TGG 0.495789 2.1:+51574017 MS.gene065342:CDS
TCTGCTCGACATGTTAGGAT+TGG 0.504109 2.1:+51572531 MS.gene065342:CDS
AGGTGGTGGCAGTTGGTCCC+GGG 0.515221 2.1:+51574922 MS.gene065342:intron
TTCAAAGTATGCTGGTACTG+AGG 0.520573 2.1:+51573965 MS.gene065342:CDS
GCCTTGAAGGACCTACGAGC+AGG 0.526587 2.1:-51572558 None:intergenic
GAGGTGGTTGCCGTTGGAGA+AGG 0.528875 2.1:+51573765 MS.gene065342:CDS
CTTGAGGAGTTCAGATGTCA+TGG 0.532308 2.1:+51575061 MS.gene065342:CDS
GGTACTGAGGTGGACTTCAA+TGG 0.535132 2.1:+51573978 MS.gene065342:CDS
GAGTACAGAACTGTGTTCCC+AGG 0.548022 2.1:-51574987 None:intergenic
TTCCCAGGAGCAACAGTCAA+CGG 0.549559 2.1:-51574972 None:intergenic
AACCGTTGACTGTTGCTCCT+GGG 0.553638 2.1:+51574970 MS.gene065342:CDS
CCCGGGCTTGTGGATGAGGA+AGG 0.557286 2.1:+51574939 MS.gene065342:CDS
GTTGTCTATTCAAAGTATGC+TGG 0.560205 2.1:+51573957 MS.gene065342:CDS
GGAGGTGAGGTGGTTGCCGT+TGG 0.560930 2.1:+51573759 MS.gene065342:CDS
GGAGCGTTGCATCCTTTGAA+GGG 0.562553 2.1:+51572481 MS.gene065342:CDS
CCAAGTTGAAATTAGTGTGA+AGG 0.567424 2.1:+51573806 MS.gene065342:CDS
TGATGGTCGAAGCCCTTCAA+AGG 0.567520 2.1:-51572493 None:intergenic
AAGTGTCTTTCCTTCTCCAA+CGG 0.569767 2.1:-51573775 None:intergenic
TGAAAAGCATCTTCTTCTGA+AGG 0.571402 2.1:+51574001 MS.gene065342:CDS
CCTTCCTCATCCACAAGCCC+GGG 0.573609 2.1:-51574939 None:intergenic
GAATAGACAACTTGTGCACC+TGG 0.575907 2.1:-51573945 None:intergenic
GTTGGAGAAGGAAAGACACT+TGG 0.579860 2.1:+51573777 MS.gene065342:CDS
AGGCGGTTTGTTTCTTACAG+AGG 0.589539 2.1:+51574559 MS.gene065342:CDS
CAGAAGAGAAGACTCAGAGT+GGG 0.589594 2.1:+51573700 MS.gene065342:CDS
AAAACACAGGTGGTGGCAGT+TGG 0.590024 2.1:+51574915 MS.gene065342:intron
ATCAGAACTCTATCATTCAG+GGG 0.593254 2.1:-51574074 None:intergenic
CATGACATCTGAACTCCTCA+AGG 0.608574 2.1:-51575060 None:intergenic
ATAAGTACCCTGTCACCCAA+AGG 0.609358 2.1:-51573663 None:intergenic
AATCAAGCCTTTGGGTGACA+GGG 0.609714 2.1:+51573656 MS.gene065342:CDS
GTTTCTTACAGAGGCAACCA+AGG 0.611857 2.1:+51574568 MS.gene065342:CDS
AACAAAGCCTCAAGGAGGTG+AGG 0.613391 2.1:+51573746 MS.gene065342:CDS
TATGCTGCAGATTGAAAAGG+CGG 0.624112 2.1:+51574523 MS.gene065342:intron
AAAGTATGCTGGTACTGAGG+TGG 0.625111 2.1:+51573968 MS.gene065342:CDS
GCAGAAGAGAAGACTCAGAG+TGG 0.644549 2.1:+51573699 MS.gene065342:CDS
AGTGCTCAAACAAAGCCTCA+AGG 0.651229 2.1:+51573738 MS.gene065342:CDS
GGATTGGTAATCCTGCTCGT+AGG 0.652074 2.1:+51572547 MS.gene065342:CDS
TACGCTGGTAATGACTTCAA+GGG 0.655719 2.1:+51575014 MS.gene065342:CDS
TTGGAGAAGGAAAGACACTT+GGG 0.658187 2.1:+51573778 MS.gene065342:CDS
GCAACCACCTCACCTCCTTG+AGG 0.660430 2.1:-51573753 None:intergenic
AAAGCCTCAAGGAGGTGAGG+TGG 0.661356 2.1:+51573749 MS.gene065342:CDS
GTTCTGTACTCCAAATACGC+TGG 0.690424 2.1:+51574999 MS.gene065342:CDS
CAGCATCATCAATTTCAACG+AGG 0.718872 2.1:+51572460 MS.gene065342:CDS
GCTCAAACAAAGCCTCAAGG+AGG 0.723993 2.1:+51573741 MS.gene065342:CDS
AGAATGAAAATAAACCTTGG+GGG 0.756557 2.1:-51572610 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATAAAATTGTTAAAAGA+TGG - chr2.1:51573588-51573607 None:intergenic 15.0%
!!! ATCATTCTTTAATTTTTCTT+GGG + chr2.1:51573867-51573886 MS.gene065342:intron 15.0%
!!! TTCATTTTTTAATTTTGATC+TGG + chr2.1:51574163-51574182 MS.gene065342:intron 15.0%
!! AAAAGAATGAAAATAAACCT+TGG - chr2.1:51572616-51572635 None:intergenic 20.0%
!! AAAAGATATTCATGAGAAAT+AGG - chr2.1:51574874-51574893 None:intergenic 20.0%
!! AAAATGCATAATTGATGTAT+TGG + chr2.1:51573538-51573557 MS.gene065342:intron 20.0%
!! AAAGAATGAAAATAAACCTT+GGG - chr2.1:51572615-51572634 None:intergenic 20.0%
!! AAATTGTGCATCAAAATTTA+AGG - chr2.1:51573295-51573314 None:intergenic 20.0%
!! AATTGTGCATCAAAATTTAA+GGG - chr2.1:51573294-51573313 None:intergenic 20.0%
!! AATTTGCAGATATGATTTAA+AGG - chr2.1:51574352-51574371 None:intergenic 20.0%
!!! ATAAAATTGCTTTTTCAGAT+TGG + chr2.1:51572943-51572962 MS.gene065342:intron 20.0%
!!! CTATAATTTTATGACACAAA+AGG - chr2.1:51572885-51572904 None:intergenic 20.0%
!!! CTTTTGTGTCATAAAATTAT+AGG + chr2.1:51572883-51572902 MS.gene065342:intron 20.0%
!!! GATCATTCTTTAATTTTTCT+TGG + chr2.1:51573866-51573885 MS.gene065342:intron 20.0%
!!! TATAATTTTGATGTTGAATG+TGG + chr2.1:51573257-51573276 MS.gene065342:intron 20.0%
!!! TTTTGTAAAAATTTGTCTTG+CGG + chr2.1:51573324-51573343 MS.gene065342:intron 20.0%
! AAGAATGAAAATAAACCTTG+GGG - chr2.1:51572614-51572633 None:intergenic 25.0%
! AATAATTGTTTCATCTCCAT+TGG - chr2.1:51573014-51573033 None:intergenic 25.0%
! AATTAAAGAATGATCATCGA+AGG - chr2.1:51573861-51573880 None:intergenic 25.0%
! AGTGATGAAAACAAAATCAA+CGG + chr2.1:51574221-51574240 MS.gene065342:intron 25.0%
! GACAATTTGAAAGAGTAATT+TGG + chr2.1:51573068-51573087 MS.gene065342:intron 25.0%
! TACAATTTCAATACCCAAAA+TGG + chr2.1:51573124-51573143 MS.gene065342:intron 25.0%
! TGCTACATTTAAATCTTAAG+TGG - chr2.1:51574697-51574716 None:intergenic 25.0%
! TTAAATCTTAAGTGGATGTT+GGG - chr2.1:51574663-51574682 None:intergenic 25.0%
! TTGGACATTTAAATCTTAAG+TGG - chr2.1:51574671-51574690 None:intergenic 25.0%
! TTTAAATCTTAAGTGGATGT+TGG - chr2.1:51574664-51574683 None:intergenic 25.0%
! TTTACTAGTGCATATGTTTA+AGG + chr2.1:51573230-51573249 MS.gene065342:intron 25.0%
!! AACATGTTTTCAAACAAAGA+AGG - chr2.1:51574632-51574651 None:intergenic 25.0%
!! AGTGTTATTGATATTGAAGA+AGG + chr2.1:51572766-51572785 MS.gene065342:intron 25.0%
!! AGTTTTGCTTATATTCTTGT+TGG + chr2.1:51574116-51574135 MS.gene065342:intron 25.0%
!! ATATAAGCAAAACTCTAAAG+AGG - chr2.1:51574110-51574129 None:intergenic 25.0%
!! CAGGGTACTTATAAAAATAA+AGG + chr2.1:51573674-51573693 MS.gene065342:CDS 25.0%
!! TTAATTTTTCTTGGGAAGAA+GGG + chr2.1:51573875-51573894 MS.gene065342:intron 25.0%
!!! TGAGATGTCTTATTTTTTAG+AGG + chr2.1:51574318-51574337 MS.gene065342:intron 25.0%
!!! TTTAATTTTTCTTGGGAAGA+AGG + chr2.1:51573874-51573893 MS.gene065342:intron 25.0%
AAAATTTCGGTTGTCTAGTT+TGG + chr2.1:51573499-51573518 MS.gene065342:intron 30.0%
AAGTTGCACAAAATATGACA+TGG - chr2.1:51574406-51574425 None:intergenic 30.0%
AATAATCAATGTCACTCGTT+AGG + chr2.1:51574792-51574811 MS.gene065342:intron 30.0%
AATTTCAATACCCAAAATGG+TGG + chr2.1:51573127-51573146 MS.gene065342:intron 30.0%
AGAATGAAAATAAACCTTGG+GGG - chr2.1:51572613-51572632 None:intergenic 30.0%
AGTTGCACAAAATATGACAT+GGG - chr2.1:51574405-51574424 None:intergenic 30.0%
ATAAAATTATAGGCATCTGG+CGG + chr2.1:51572893-51572912 MS.gene065342:intron 30.0%
ATATATGCTGCAGATTGAAA+AGG + chr2.1:51574520-51574539 MS.gene065342:intron 30.0%
ATTGTTAAAAGATGGAGCTT+TGG - chr2.1:51573580-51573599 None:intergenic 30.0%
CAAAATTGAACCACTCAATA+TGG + chr2.1:51574191-51574210 MS.gene065342:intron 30.0%
CACGCATGAATAACAATTTA+TGG + chr2.1:51574255-51574274 MS.gene065342:intron 30.0%
CTTTGATATCATCAGTTTCA+AGG - chr2.1:51574046-51574065 None:intergenic 30.0%
GATGAAACAATTATTTGAGG+TGG + chr2.1:51573019-51573038 MS.gene065342:intron 30.0%
GGAGATGAAACAATTATTTG+AGG + chr2.1:51573016-51573035 MS.gene065342:intron 30.0%
GTCATAAAATTATAGGCATC+TGG + chr2.1:51572890-51572909 MS.gene065342:intron 30.0%
TATCAGAACTCTATCATTCA+GGG - chr2.1:51574078-51574097 None:intergenic 30.0%
TTATCAGAACTCTATCATTC+AGG - chr2.1:51574079-51574098 None:intergenic 30.0%
! GAATGATAGAGTTCTGATAA+AGG + chr2.1:51574079-51574098 MS.gene065342:CDS 30.0%
! TGCAACTTTATTTCTCATAC+AGG + chr2.1:51574418-51574437 MS.gene065342:intron 30.0%
! TTTATTTCTCATACAGGAGT+AGG + chr2.1:51574424-51574443 MS.gene065342:intron 30.0%
!! ATGTGTTGTTTGTAAAACAC+AGG + chr2.1:51574902-51574921 MS.gene065342:intron 30.0%
!! ATTGAAGAAGGTTGTCATTT+TGG + chr2.1:51572778-51572797 MS.gene065342:intron 30.0%
!! ATTGAGTTCTGAAAGGATAA+TGG + chr2.1:51573189-51573208 MS.gene065342:intron 30.0%
!! TGTTTGAATTGAGTTCTGAA+AGG + chr2.1:51573182-51573201 MS.gene065342:intron 30.0%
!!! TCATTTTGGTTAGAAGAAAG+TGG + chr2.1:51572792-51572811 MS.gene065342:intron 30.0%
AAGCTTACTGTTCCAAATGA+AGG - chr2.1:51574599-51574618 None:intergenic 35.0%
AATTGTTTCATCTCCATTGG+AGG - chr2.1:51573011-51573030 None:intergenic 35.0%
ACTCACTTATCCATATTGAG+TGG - chr2.1:51574204-51574223 None:intergenic 35.0%
AGACCTCAACAAAACATAAG+AGG - chr2.1:51574467-51574486 None:intergenic 35.0%
AGTAGGATTCAAAGACACTA+TGG + chr2.1:51574441-51574460 MS.gene065342:intron 35.0%
AGTTTGGTTGGATATCGAAA+AGG - chr2.1:51573369-51573388 None:intergenic 35.0%
ATCAGAACTCTATCATTCAG+GGG - chr2.1:51574077-51574096 None:intergenic 35.0%
CATCGAAGGTTTAATGACAT+CGG - chr2.1:51573847-51573866 None:intergenic 35.0%
CCTTCACACTAATTTCAACT+TGG - chr2.1:51573809-51573828 None:intergenic 35.0%
GAATGAAACTGAACACTTGA+TGG - chr2.1:51572513-51572532 None:intergenic 35.0%
GCATAATTGTTAACCCACTT+GGG + chr2.1:51573403-51573422 MS.gene065342:intron 35.0%
GCATATATTAAACCAGTCAG+TGG - chr2.1:51574508-51574527 None:intergenic 35.0%
GTTGTCTATTCAAAGTATGC+TGG + chr2.1:51573957-51573976 MS.gene065342:CDS 35.0%
TAATCGTGCTGAACATATTC+TGG - chr2.1:51574833-51574852 None:intergenic 35.0%
TATTCTTGTTGGATCCAAGT+TGG + chr2.1:51574127-51574146 MS.gene065342:intron 35.0%
TCTTCTTGATTGTGCATTTG+TGG + chr2.1:51572821-51572840 MS.gene065342:intron 35.0%
TGCAAATTATCTGATCGTCA+AGG + chr2.1:51574364-51574383 MS.gene065342:intron 35.0%
TTTGACAATCAAAGCCTTGA+AGG - chr2.1:51572574-51572593 None:intergenic 35.0%
TTTGGTATTTCGCAAATTCG+AGG + chr2.1:51573086-51573105 MS.gene065342:intron 35.0%
! AACAATTATTTGAGGTGGTG+TGG + chr2.1:51573024-51573043 MS.gene065342:intron 35.0%
! AACAGAGTAAACCACCATTT+TGG - chr2.1:51573141-51573160 None:intergenic 35.0%
! ACAATTATTTGAGGTGGTGT+GGG + chr2.1:51573025-51573044 MS.gene065342:intron 35.0%
! ACAGAGTAAACCACCATTTT+GGG - chr2.1:51573140-51573159 None:intergenic 35.0%
! ATTTTCCCCGGTGAAAATTT+CGG + chr2.1:51573486-51573505 MS.gene065342:intron 35.0%
! CCAAGTTGAAATTAGTGTGA+AGG + chr2.1:51573806-51573825 MS.gene065342:CDS 35.0%
! TAGACAACCGAAATTTTCAC+CGG - chr2.1:51573496-51573515 None:intergenic 35.0%
! TGTTGTTTGTAAAACACAGG+TGG + chr2.1:51574905-51574924 MS.gene065342:intron 35.0%
! TTGGATATCGAAAAGGCTTT+TGG - chr2.1:51573362-51573381 None:intergenic 35.0%
!! AGTTCTGAAAGGATAATGGT+GGG + chr2.1:51573193-51573212 MS.gene065342:intron 35.0%
!! GTTTTGAGTACATTACCTTG+AGG + chr2.1:51575045-51575064 MS.gene065342:CDS 35.0%
!! TGAAAAGCATCTTCTTCTGA+AGG + chr2.1:51574001-51574020 MS.gene065342:CDS 35.0%
AAGGCGGAAGAAAAAACTTC+AGG + chr2.1:51574539-51574558 MS.gene065342:CDS 40.0%
AAGTGTCTTTCCTTCTCCAA+CGG - chr2.1:51573778-51573797 None:intergenic 40.0%
AATGACTTCAAGGGCAAAGA+TGG + chr2.1:51575023-51575042 MS.gene065342:CDS 40.0%
AATTGTTAACCCACTTGGGT+TGG + chr2.1:51573407-51573426 MS.gene065342:intron 40.0%
ACCAAGGAGAAACCTTCATT+TGG + chr2.1:51574584-51574603 MS.gene065342:CDS 40.0%
ATAGAATCCAAGACCTTGAG+AGG - chr2.1:51573468-51573487 None:intergenic 40.0%
CAGCATCATCAATTTCAACG+AGG + chr2.1:51572460-51572479 MS.gene065342:CDS 40.0%
CGCATAATTGTTAACCCACT+TGG + chr2.1:51573402-51573421 MS.gene065342:intron 40.0%
CTGAAGGATGATGACATTGT+TGG + chr2.1:51574017-51574036 MS.gene065342:CDS 40.0%
GAAGTCATTACCAGCGTATT+TGG - chr2.1:51575012-51575031 None:intergenic 40.0%
TACACTGCAATCAAGCCTTT+GGG + chr2.1:51573648-51573667 MS.gene065342:CDS 40.0%
TATGCTGCAGATTGAAAAGG+CGG + chr2.1:51574523-51574542 MS.gene065342:intron 40.0%
TCCAAATGAAGGTTTCTCCT+TGG - chr2.1:51574588-51574607 None:intergenic 40.0%
TCTTTGTGTAGCAGTTTGGT+TGG - chr2.1:51573381-51573400 None:intergenic 40.0%
TGTTTGTAAAACACAGGTGG+TGG + chr2.1:51574908-51574927 MS.gene065342:intron 40.0%
TTCAAAGTATGCTGGTACTG+AGG + chr2.1:51573965-51573984 MS.gene065342:CDS 40.0%
TTCATTCTGCTCGACATGTT+AGG + chr2.1:51572526-51572545 MS.gene065342:CDS 40.0%
TTGGAGAAGGAAAGACACTT+GGG + chr2.1:51573778-51573797 MS.gene065342:CDS 40.0%
TTTCGCAAATTCGAGGTCAT+TGG + chr2.1:51573093-51573112 MS.gene065342:intron 40.0%
! AGACAACCGAAATTTTCACC+GGG - chr2.1:51573495-51573514 None:intergenic 40.0%
! ATACGCTGGTAATGACTTCA+AGG + chr2.1:51575013-51575032 MS.gene065342:CDS 40.0%
! GTCTTGGATTCTATTTTCCC+CGG + chr2.1:51573474-51573493 MS.gene065342:intron 40.0%
! TACGCTGGTAATGACTTCAA+GGG + chr2.1:51575014-51575033 MS.gene065342:CDS 40.0%
! TCAAACAAAGAAGGTACAGC+AGG - chr2.1:51574623-51574642 None:intergenic 40.0%
!! GAGTTCTGAAAGGATAATGG+TGG + chr2.1:51573192-51573211 MS.gene065342:intron 40.0%
!! TGGCCTCTTATGTTTTGTTG+AGG + chr2.1:51574461-51574480 MS.gene065342:intron 40.0%
!!! TGTGTTTTGTTTGTACAGCC+AGG + chr2.1:51573927-51573946 MS.gene065342:intron 40.0%
AATCAAGCCTTTGGGTGACA+GGG + chr2.1:51573656-51573675 MS.gene065342:CDS 45.0%
AGTGCTCAAACAAAGCCTCA+AGG + chr2.1:51573738-51573757 MS.gene065342:CDS 45.0%
ATAAGTACCCTGTCACCCAA+AGG - chr2.1:51573666-51573685 None:intergenic 45.0%
ATGATACACACCACCTCCAA+TGG + chr2.1:51572995-51573014 MS.gene065342:intron 45.0%
CAGAAGAGAAGACTCAGAGT+GGG + chr2.1:51573700-51573719 MS.gene065342:CDS 45.0%
CATGACATCTGAACTCCTCA+AGG - chr2.1:51575063-51575082 None:intergenic 45.0%
CTTGAGGAGTTCAGATGTCA+TGG + chr2.1:51575061-51575080 MS.gene065342:CDS 45.0%
GAATAGACAACTTGTGCACC+TGG - chr2.1:51573948-51573967 None:intergenic 45.0%
GCGATCTTTGTGTAGCAGTT+TGG - chr2.1:51573385-51573404 None:intergenic 45.0%
GCGGAAGAAAAAACTTCAGG+CGG + chr2.1:51574542-51574561 MS.gene065342:CDS 45.0%
GTACACTGCAATCAAGCCTT+TGG + chr2.1:51573647-51573666 MS.gene065342:intron 45.0%
GTTCTGTACTCCAAATACGC+TGG + chr2.1:51574999-51575018 MS.gene065342:CDS 45.0%
GTTGGAGAAGGAAAGACACT+TGG + chr2.1:51573777-51573796 MS.gene065342:CDS 45.0%
GTTTCTTACAGAGGCAACCA+AGG + chr2.1:51574568-51574587 MS.gene065342:CDS 45.0%
TCTGCTCGACATGTTAGGAT+TGG + chr2.1:51572531-51572550 MS.gene065342:CDS 45.0%
TGTTTCATCTCCATTGGAGG+TGG - chr2.1:51573008-51573027 None:intergenic 45.0%
TTGATTGCAGTGTACTGCAC+AGG - chr2.1:51573642-51573661 None:intergenic 45.0%
! AAAGTATGCTGGTACTGAGG+TGG + chr2.1:51573968-51573987 MS.gene065342:CDS 45.0%
! AGGCGGTTTGTTTCTTACAG+AGG + chr2.1:51574559-51574578 MS.gene065342:CDS 45.0%
! GACAACCGAAATTTTCACCG+GGG - chr2.1:51573494-51573513 None:intergenic 45.0%
! GCTTTTAGATAGCCACTGAC+TGG + chr2.1:51574493-51574512 MS.gene065342:intron 45.0%
!! GGCTTTGTTTGAGCACTTGA+TGG - chr2.1:51573735-51573754 None:intergenic 45.0%
!! TTAAACTAAATTAAATAAAA+TGG - chr2.1:51572747-51572766 None:intergenic 5.0%
!!! ATGTTTTTTTTTTTTTTTTT+TGG + chr2.1:51572690-51572709 MS.gene065342:intron 5.0%
!!! TGTTTTTTTTTTTTTTTTTT+GGG + chr2.1:51572691-51572710 MS.gene065342:intron 5.0%
AACAAAGCCTCAAGGAGGTG+AGG + chr2.1:51573746-51573765 MS.gene065342:CDS 50.0%
AACCTTGGGGGTAACAACAG+TGG - chr2.1:51572601-51572620 None:intergenic 50.0%
CAATCAAGCCTTTGGGTGAC+AGG + chr2.1:51573655-51573674 MS.gene065342:CDS 50.0%
GAGTACAGAACTGTGTTCCC+AGG - chr2.1:51574990-51575009 None:intergenic 50.0%
GCAGAAGAGAAGACTCAGAG+TGG + chr2.1:51573699-51573718 MS.gene065342:CDS 50.0%
GCTCAAACAAAGCCTCAAGG+AGG + chr2.1:51573741-51573760 MS.gene065342:CDS 50.0%
TGATGGTCGAAGCCCTTCAA+AGG - chr2.1:51572496-51572515 None:intergenic 50.0%
TGTCTAAATGCCCCCTTCAG+AGG - chr2.1:51573052-51573071 None:intergenic 50.0%
TTCCCAGGAGCAACAGTCAA+CGG - chr2.1:51574975-51574994 None:intergenic 50.0%
! AAAACACAGGTGGTGGCAGT+TGG + chr2.1:51574915-51574934 MS.gene065342:intron 50.0%
! AAACCGTTGACTGTTGCTCC+TGG + chr2.1:51574969-51574988 MS.gene065342:CDS 50.0%
! AACCGTTGACTGTTGCTCCT+GGG + chr2.1:51574970-51574989 MS.gene065342:CDS 50.0%
! GGATTGGTAATCCTGCTCGT+AGG + chr2.1:51572547-51572566 MS.gene065342:CDS 50.0%
! GGTACTGAGGTGGACTTCAA+TGG + chr2.1:51573978-51573997 MS.gene065342:CDS 50.0%
! GTTGGATCCAAGTTGGCGAA+TGG + chr2.1:51574134-51574153 MS.gene065342:intron 50.0%
!! AGGAGCGTTGCATCCTTTGA+AGG + chr2.1:51572480-51572499 MS.gene065342:CDS 50.0%
!! GGAGCGTTGCATCCTTTGAA+GGG + chr2.1:51572481-51572500 MS.gene065342:CDS 50.0%
AAAGCCTCAAGGAGGTGAGG+TGG + chr2.1:51573749-51573768 MS.gene065342:CDS 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG + chr2.1:51573452-51573471 MS.gene065342:intron 55.0%
CTTGGGGGTAACAACAGTGG+CGG - chr2.1:51572598-51572617 None:intergenic 55.0%
GTGTGCTCCTCTCAAGGTCT+TGG + chr2.1:51573458-51573477 MS.gene065342:intron 55.0%
TCCTGCTCGTAGGTCCTTCA+AGG + chr2.1:51572557-51572576 MS.gene065342:CDS 55.0%
! CTTGAGAGGAGCACACTCCA+AGG - chr2.1:51573454-51573473 None:intergenic 55.0%
! GGATCCAAGTTGGCGAATGG+CGG + chr2.1:51574137-51574156 MS.gene065342:intron 55.0%
!! TTAACCCACTTGGGTTGGCC+TGG + chr2.1:51573412-51573431 MS.gene065342:intron 55.0%
ACCACCAGGCCAACCCAAGT+GGG - chr2.1:51573419-51573438 None:intergenic 60.0%
ACCACCGCCATTCGCCAACT+TGG - chr2.1:51574144-51574163 None:intergenic 60.0%
AGGTGGTGTGGGTCCTCTGA+AGG + chr2.1:51573036-51573055 MS.gene065342:intron 60.0%
CCTTCCTCATCCACAAGCCC+GGG - chr2.1:51574942-51574961 None:intergenic 60.0%
CGCCACTGTTGTTACCCCCA+AGG + chr2.1:51572596-51572615 MS.gene065342:CDS 60.0%
GAGGTGGTTGCCGTTGGAGA+AGG + chr2.1:51573765-51573784 MS.gene065342:CDS 60.0%
GCAACCACCTCACCTCCTTG+AGG - chr2.1:51573756-51573775 None:intergenic 60.0%
GCCTTCCTCATCCACAAGCC+CGG - chr2.1:51574943-51574962 None:intergenic 60.0%
GCCTTGAAGGACCTACGAGC+AGG - chr2.1:51572561-51572580 None:intergenic 60.0%
GGTGGTGTGGGTCCTCTGAA+GGG + chr2.1:51573037-51573056 MS.gene065342:intron 60.0%
! GTGGTGTGGGTCCTCTGAAG+GGG + chr2.1:51573038-51573057 MS.gene065342:intron 60.0%
! TCCAAGTTGGCGAATGGCGG+TGG + chr2.1:51574140-51574159 MS.gene065342:intron 60.0%
! TGGTGTGGGTCCTCTGAAGG+GGG + chr2.1:51573039-51573058 MS.gene065342:intron 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG + chr2.1:51573434-51573453 MS.gene065342:intron 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG + chr2.1:51573427-51573446 MS.gene065342:intron 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG + chr2.1:51573426-51573445 MS.gene065342:intron 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG + chr2.1:51573421-51573440 MS.gene065342:intron 60.0%
CACCACCAGGCCAACCCAAG+TGG - chr2.1:51573420-51573439 None:intergenic 65.0%
CCCGGGCTTGTGGATGAGGA+AGG + chr2.1:51574939-51574958 MS.gene065342:CDS 65.0%
GGAGGTGAGGTGGTTGCCGT+TGG + chr2.1:51573759-51573778 MS.gene065342:CDS 65.0%
GGTCCCAAGCCAACACCACC+AGG - chr2.1:51573433-51573452 None:intergenic 65.0%
TGGTCCCGGGCTTGTGGATG+AGG + chr2.1:51574935-51574954 MS.gene065342:CDS 65.0%
! AGGTGGTGGCAGTTGGTCCC+GGG + chr2.1:51574922-51574941 MS.gene065342:intron 65.0%
! CAGGTGGTGGCAGTTGGTCC+CGG + chr2.1:51574921-51574940 MS.gene065342:intron 65.0%
!! ACCCACTTGGGTTGGCCTGG+TGG + chr2.1:51573415-51573434 MS.gene065342:intron 65.0%
GGCAGTTGGTCCCGGGCTTG+TGG + chr2.1:51574929-51574948 MS.gene065342:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 51572441 51575097 51572441 ID=MS.gene065342
chr2.1 mRNA 51572441 51575097 51572441 ID=MS.gene065342.t1;Parent=MS.gene065342
chr2.1 exon 51572441 51572617 51572441 ID=MS.gene065342.t1.exon1;Parent=MS.gene065342.t1
chr2.1 CDS 51572441 51572617 51572441 ID=cds.MS.gene065342.t1;Parent=MS.gene065342.t1
chr2.1 exon 51573648 51573827 51573648 ID=MS.gene065342.t1.exon2;Parent=MS.gene065342.t1
chr2.1 CDS 51573648 51573827 51573648 ID=cds.MS.gene065342.t1;Parent=MS.gene065342.t1
chr2.1 exon 51573945 51574100 51573945 ID=MS.gene065342.t1.exon3;Parent=MS.gene065342.t1
chr2.1 CDS 51573945 51574100 51573945 ID=cds.MS.gene065342.t1;Parent=MS.gene065342.t1
chr2.1 exon 51574533 51574610 51574533 ID=MS.gene065342.t1.exon4;Parent=MS.gene065342.t1
chr2.1 CDS 51574533 51574610 51574533 ID=cds.MS.gene065342.t1;Parent=MS.gene065342.t1
chr2.1 exon 51574924 51575097 51574924 ID=MS.gene065342.t1.exon5;Parent=MS.gene065342.t1
chr2.1 CDS 51574924 51575097 51574924 ID=cds.MS.gene065342.t1;Parent=MS.gene065342.t1
Gene Sequence

>MS.gene065342

ATGGCTTCTTCTCAGTTAACAGCATCATCAATTTCAACGAGGAGCGTTGCATCCTTTGAAGGGCTTCGACCATCAAGTGTTCAGTTTCATTCTGCTCGACATGTTAGGATTGGTAATCCTGCTCGTAGGTCCTTCAAGGCTTTGATTGTCAAAGCCGCCACTGTTGTTACCCCCAAGGTTTATTTTCATTCTTTTTTGTTTTAATTTGATATAAATTAAGAATTGAAAGCAGTGTTTTTTGCTGTTGTAATGTTTTTTTTTTTTTTTTTTGGGTTAATTTATAAAGAATTGTGTAGTTTTAGACCATTTTATTTAATTTAGTTTAAGTGTTATTGATATTGAAGAAGGTTGTCATTTTGGTTAGAAGAAAGTGGCGAAATTCTTCTTGATTGTGCATTTGTGGAAGTTTTAAGTTTTATCATTTAATATTTGAGTAAATAACCTTTTGTGTCATAAAATTATAGGCATCTGGCGGAGAATTGAGACTACAAATTTATGAAATATAAAATTGCTTTTTCAGATTGGTCTAACAAATGTCGAAATGCGTCTTTTAGATGATACACACCACCTCCAATGGAGATGAAACAATTATTTGAGGTGGTGTGGGTCCTCTGAAGGGGGCATTTAGACAATTTGAAAGAGTAATTTGGTATTTCGCAAATTCGAGGTCATTGGAAGACATTTACAATTTCAATACCCAAAATGGTGGTTTACTCTGTTATTGTTATTTTGCTTAGAGAATGTTTGAATTGAGTTCTGAAAGGATAATGGTGGGCGATGAAGTAGCAATTTACTAGTGCATATGTTTAAGGACAGTATAATTTTGATGTTGAATGTGGATATCTTCATGCCCTTAAATTTTGATGCACAATTTCATTCTGATTTTTGTAAAAATTTGTCTTGCGGTTTATTTATTAACCAAAAGCCTTTTCGATATCCAACCAAACTGCTACACAAAGATCGCATAATTGTTAACCCACTTGGGTTGGCCTGGTGGTGTTGGCTTGGGACCTTGGAGTGTGCTCCTCTCAAGGTCTTGGATTCTATTTTCCCCGGTGAAAATTTCGGTTGTCTAGTTTGGCTTCTTCTTTAAAAAAAAAATGCATAATTGATGTATTGGAGAACTGAGATAGTTTCCAAAGCTCCATCTTTTAACAATTTTATGATTCAATGCTACATGTATCTAAGTGTTTTTTTTCCTGTGCAGTACACTGCAATCAAGCCTTTGGGTGACAGGGTACTTATAAAAATAAAGGAAGCAGAAGAGAAGACTCAGAGTGGGATTTTGCTTCCATCAAGTGCTCAAACAAAGCCTCAAGGAGGTGAGGTGGTTGCCGTTGGAGAAGGAAAGACACTTGGGAAGAACCAAGTTGAAATTAGTGTGAAGGTAATGTTGCTATTTTCCGATGTCATTAAACCTTCGATGATCATTCTTTAATTTTTCTTGGGAAGAAGGGAGCTTTCTCTGTAAGCTTAATTATTGTGATGTGTTTTGTTTGTACAGCCAGGTGCACAAGTTGTCTATTCAAAGTATGCTGGTACTGAGGTGGACTTCAATGGTGAAAAGCATCTTCTTCTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGATATCAAAGATCTTAAACCCCTGAATGATAGAGTTCTGATAAAGGTAATTCCTCTTTAGAGTTTTGCTTATATTCTTGTTGGATCCAAGTTGGCGAATGGCGGTGGTTCATTTTTTAATTTTGATCTGGTTTCTCAAAATTGAACCACTCAATATGGATAAGTGAGTGATGAAAACAAAATCAACGGTTGATATTGCACACGCATGAATAACAATTTATGGATTTGCAAAAATATCAGTTGTTGATTTTGTCATCAGTATTTGAGATGTCTTATTTTTTAGAGGATTTAAATCCTTTAAATCATATCTGCAAATTATCTGATCGTCAAGGAATATGATGCTTTTTCCCATGTCATATTTTGTGCAACTTTATTTCTCATACAGGAGTAGGATTCAAAGACACTATGGCCTCTTATGTTTTGTTGAGGTCTGTGATAGCTTTTAGATAGCCACTGACTGGTTTAATATATGCTGCAGATTGAAAAGGCGGAAGAAAAAACTTCAGGCGGTTTGTTTCTTACAGAGGCAACCAAGGAGAAACCTTCATTTGGAACAGTAAGCTTTCCTGCTGTACCTTCTTTGTTTGAAAACATGTTATAGTTTACCCAACATCCACTTAAGATTTAAATGTCCAACATCCACTTAAGATTTAAATGTAGCACAATCTCACAAAGTCGAGCATTGTGAGTTAAATGTTTAAGTCTTATCTCTATAGTCAATGTGAGACTTGAGTGTTAATAATCAATGTCACTCGTTAGGAAATTGCTTGTTTTGCCAGAATATGTTCAGCACGATTAATTGACAGTTGACGTTATCCTATTTCTCATGAATATCTTTTGATCAATGATGTGTTGTTTGTAAAACACAGGTGGTGGCAGTTGGTCCCGGGCTTGTGGATGAGGAAGGCAATAGAAAACCGTTGACTGTTGCTCCTGGGAACACAGTTCTGTACTCCAAATACGCTGGTAATGACTTCAAGGGCAAAGATGGTTTTGAGTACATTACCTTGAGGAGTTCAGATGTCATGGCTGTACTCTCTTAG

Protein sequence

>MS.gene065342.t1

MASSQLTASSISTRSVASFEGLRPSSVQFHSARHVRIGNPARRSFKALIVKAATVVTPKYTAIKPLGDRVLIKIKEAEEKTQSGILLPSSAQTKPQGGEVVAVGEGKTLGKNQVEISVKPGAQVVYSKYAGTEVDFNGEKHLLLKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEKTSGGLFLTEATKEKPSFGTVVAVGPGLVDEEGNRKPLTVAPGNTVLYSKYAGNDFKGKDGFEYITLRSSDVMAVLS