Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065342.t1 | XP_013463580.1 | 98 | 254 | 5 | 0 | 1 | 254 | 1 | 254 | 1.00E-130 | 476.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065342.t1 | O65282 | 70.7 | 256 | 70 | 2 | 1 | 254 | 1 | 253 | 4.5e-95 | 349.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065342.t1 | A0A072VHI1 | 98.0 | 254 | 5 | 0 | 1 | 254 | 1 | 254 | 7.4e-131 | 476.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049284 | MS.gene065342 | 0.821584 | 3.74E-53 | -1.69E-46 |
MS.gene049351 | MS.gene065342 | 0.819978 | 8.74E-53 | -1.69E-46 |
MS.gene049491 | MS.gene065342 | 0.801267 | 9.76E-49 | -1.69E-46 |
MS.gene049614 | MS.gene065342 | 0.810026 | 1.41E-50 | -1.69E-46 |
MS.gene049758 | MS.gene065342 | 0.807583 | 4.71E-50 | -1.69E-46 |
MS.gene050076 | MS.gene065342 | 0.860019 | 2.76E-63 | -1.69E-46 |
MS.gene050099 | MS.gene065342 | 0.843764 | 1.15E-58 | -1.69E-46 |
MS.gene050301 | MS.gene065342 | 0.844228 | 8.61E-59 | -1.69E-46 |
MS.gene050397 | MS.gene065342 | 0.809973 | 1.45E-50 | -1.69E-46 |
MS.gene050432 | MS.gene065342 | 0.808016 | 3.81E-50 | -1.69E-46 |
MS.gene050529 | MS.gene065342 | 0.82508 | 5.70E-54 | -1.69E-46 |
MS.gene050767 | MS.gene065342 | 0.831759 | 1.39E-55 | -1.69E-46 |
MS.gene050770 | MS.gene065342 | 0.835356 | 1.76E-56 | -1.69E-46 |
MS.gene050783 | MS.gene065342 | 0.80884 | 2.54E-50 | -1.69E-46 |
MS.gene05101 | MS.gene065342 | 0.845908 | 3.03E-59 | -1.69E-46 |
MS.gene051471 | MS.gene065342 | 0.823476 | 1.36E-53 | -1.69E-46 |
MS.gene051877 | MS.gene065342 | 0.803821 | 2.90E-49 | -1.69E-46 |
MS.gene052078 | MS.gene065342 | 0.818658 | 1.75E-52 | -1.69E-46 |
MS.gene052207 | MS.gene065342 | 0.806476 | 8.08E-50 | -1.69E-46 |
MS.gene052287 | MS.gene065342 | 0.8001 | 1.69E-48 | -1.69E-46 |
MS.gene052290 | MS.gene065342 | 0.812064 | 5.12E-51 | -1.69E-46 |
MS.gene052310 | MS.gene065342 | 0.818122 | 2.31E-52 | -1.69E-46 |
MS.gene052326 | MS.gene065342 | 0.867152 | 1.69E-65 | -1.69E-46 |
MS.gene053104 | MS.gene065342 | 0.806489 | 8.02E-50 | -1.69E-46 |
MS.gene053107 | MS.gene065342 | 0.817333 | 3.48E-52 | -1.69E-46 |
MS.gene053322 | MS.gene065342 | 0.840215 | 9.94E-58 | -1.69E-46 |
MS.gene053836 | MS.gene065342 | 0.802755 | 4.83E-49 | -1.69E-46 |
MS.gene053971 | MS.gene065342 | 0.824389 | 8.29E-54 | -1.69E-46 |
MS.gene054376 | MS.gene065342 | 0.833507 | 5.12E-56 | -1.69E-46 |
MS.gene05455 | MS.gene065342 | 0.84479 | 6.08E-59 | -1.69E-46 |
MS.gene054802 | MS.gene065342 | 0.851587 | 8.06E-61 | -1.69E-46 |
MS.gene054803 | MS.gene065342 | 0.851099 | 1.11E-60 | -1.69E-46 |
MS.gene054804 | MS.gene065342 | 0.850374 | 1.77E-60 | -1.69E-46 |
MS.gene055277 | MS.gene065342 | 0.857687 | 1.38E-62 | -1.69E-46 |
MS.gene055390 | MS.gene065342 | 0.85403 | 1.61E-61 | -1.69E-46 |
MS.gene055422 | MS.gene065342 | 0.828504 | 8.67E-55 | -1.69E-46 |
MS.gene055428 | MS.gene065342 | 0.822206 | 2.68E-53 | -1.69E-46 |
MS.gene055499 | MS.gene065342 | 0.815632 | 8.37E-52 | -1.69E-46 |
MS.gene055896 | MS.gene065342 | 0.828369 | 9.34E-55 | -1.69E-46 |
MS.gene056407 | MS.gene065342 | 0.816657 | 4.94E-52 | -1.69E-46 |
MS.gene056410 | MS.gene065342 | 0.817035 | 4.06E-52 | -1.69E-46 |
MS.gene056612 | MS.gene065342 | 0.826555 | 2.54E-54 | -1.69E-46 |
MS.gene056796 | MS.gene065342 | 0.824263 | 8.88E-54 | -1.69E-46 |
MS.gene057011 | MS.gene065342 | 0.81572 | 8.00E-52 | -1.69E-46 |
MS.gene057129 | MS.gene065342 | 0.800141 | 1.66E-48 | -1.69E-46 |
MS.gene057439 | MS.gene065342 | 0.803921 | 2.77E-49 | -1.69E-46 |
MS.gene058002 | MS.gene065342 | 0.803477 | 3.42E-49 | -1.69E-46 |
MS.gene058082 | MS.gene065342 | 0.816905 | 4.35E-52 | -1.69E-46 |
MS.gene05811 | MS.gene065342 | 0.826695 | 2.36E-54 | -1.69E-46 |
MS.gene058233 | MS.gene065342 | 0.835961 | 1.24E-56 | -1.69E-46 |
MS.gene058293 | MS.gene065342 | 0.859281 | 4.61E-63 | -1.69E-46 |
MS.gene058660 | MS.gene065342 | 0.874113 | 8.70E-68 | -1.69E-46 |
MS.gene058787 | MS.gene065342 | 0.805805 | 1.12E-49 | -1.69E-46 |
MS.gene05907 | MS.gene065342 | 0.803603 | 3.22E-49 | -1.69E-46 |
MS.gene059326 | MS.gene065342 | 0.804511 | 2.09E-49 | -1.69E-46 |
MS.gene059518 | MS.gene065342 | 0.806741 | 7.10E-50 | -1.69E-46 |
MS.gene059536 | MS.gene065342 | 0.819635 | 1.05E-52 | -1.69E-46 |
MS.gene059597 | MS.gene065342 | 0.813982 | 1.94E-51 | -1.69E-46 |
MS.gene059676 | MS.gene065342 | 0.817206 | 3.72E-52 | -1.69E-46 |
MS.gene059688 | MS.gene065342 | 0.800972 | 1.12E-48 | -1.69E-46 |
MS.gene059692 | MS.gene065342 | 0.826285 | 2.95E-54 | -1.69E-46 |
MS.gene059695 | MS.gene065342 | 0.831876 | 1.30E-55 | -1.69E-46 |
MS.gene059960 | MS.gene065342 | 0.864037 | 1.62E-64 | -1.69E-46 |
MS.gene06090 | MS.gene065342 | 0.82967 | 4.52E-55 | -1.69E-46 |
MS.gene061049 | MS.gene065342 | 0.803763 | 2.98E-49 | -1.69E-46 |
MS.gene061200 | MS.gene065342 | 0.82543 | 4.71E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene065342 | MS.gene24508 | PPI |
MS.gene065342 | MS.gene00537 | PPI |
MS.gene065342 | MS.gene00538 | PPI |
MS.gene66498 | MS.gene065342 | PPI |
MS.gene065342 | MS.gene39671 | PPI |
MS.gene065342 | MS.gene39354 | PPI |
MS.gene065342 | MS.gene022688 | PPI |
MS.gene065342 | MS.gene66497 | PPI |
MS.gene051662 | MS.gene065342 | PPI |
MS.gene051663 | MS.gene065342 | PPI |
MS.gene065342 | MS.gene24509 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065342.t1 | MTR_2g043230 | 98.031 | 254 | 5 | 0 | 1 | 254 | 1 | 254 | 0.0 | 501 |
MS.gene065342.t1 | MTR_4g124910 | 74.016 | 254 | 65 | 1 | 1 | 254 | 1 | 253 | 4.60e-138 | 388 |
MS.gene065342.t1 | MTR_3g110030 | 38.947 | 95 | 56 | 2 | 159 | 253 | 3 | 95 | 5.58e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065342.t1 | AT5G20720 | 70.703 | 256 | 70 | 2 | 1 | 254 | 1 | 253 | 4.65e-128 | 363 |
MS.gene065342.t1 | AT5G20720 | 70.703 | 256 | 70 | 2 | 1 | 254 | 1 | 253 | 4.65e-128 | 363 |
MS.gene065342.t1 | AT5G20720 | 70.703 | 256 | 70 | 2 | 1 | 254 | 1 | 253 | 4.65e-128 | 363 |
MS.gene065342.t1 | AT5G20720 | 70.703 | 256 | 70 | 2 | 1 | 254 | 1 | 253 | 4.65e-128 | 363 |
Find 71 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGTCATTACCAGCGTATT+TGG | 0.227055 | 2.1:-51575009 | None:intergenic |
TTATCAGAACTCTATCATTC+AGG | 0.266283 | 2.1:-51574076 | None:intergenic |
TGTCATGGCTGTACTCTCTT+AGG | 0.332407 | 2.1:+51575076 | MS.gene065342:CDS |
TTCATTCTGCTCGACATGTT+AGG | 0.390168 | 2.1:+51572526 | MS.gene065342:CDS |
GTACACTGCAATCAAGCCTT+TGG | 0.401887 | 2.1:+51573647 | MS.gene065342:intron |
CAATCAAGCCTTTGGGTGAC+AGG | 0.402537 | 2.1:+51573655 | MS.gene065342:CDS |
GGCTTTGTTTGAGCACTTGA+TGG | 0.405445 | 2.1:-51573732 | None:intergenic |
AAGCTTACTGTTCCAAATGA+AGG | 0.410647 | 2.1:-51574596 | None:intergenic |
CTTTGATATCATCAGTTTCA+AGG | 0.418776 | 2.1:-51574043 | None:intergenic |
ACCAAGGAGAAACCTTCATT+TGG | 0.419164 | 2.1:+51574584 | MS.gene065342:CDS |
CAGGTGGTGGCAGTTGGTCC+CGG | 0.425166 | 2.1:+51574921 | MS.gene065342:intron |
TCCTGCTCGTAGGTCCTTCA+AGG | 0.426073 | 2.1:+51572557 | MS.gene065342:CDS |
GAATGATAGAGTTCTGATAA+AGG | 0.428615 | 2.1:+51574079 | MS.gene065342:CDS |
GAATGAAACTGAACACTTGA+TGG | 0.432793 | 2.1:-51572510 | None:intergenic |
CCTTCACACTAATTTCAACT+TGG | 0.433049 | 2.1:-51573806 | None:intergenic |
ATACGCTGGTAATGACTTCA+AGG | 0.442105 | 2.1:+51575013 | MS.gene065342:CDS |
TGGTCCCGGGCTTGTGGATG+AGG | 0.443053 | 2.1:+51574935 | MS.gene065342:CDS |
GCCTTCCTCATCCACAAGCC+CGG | 0.445614 | 2.1:-51574940 | None:intergenic |
AGGAGCGTTGCATCCTTTGA+AGG | 0.448441 | 2.1:+51572480 | MS.gene065342:CDS |
TCCAAATGAAGGTTTCTCCT+TGG | 0.449870 | 2.1:-51574585 | None:intergenic |
GGCAGTTGGTCCCGGGCTTG+TGG | 0.451200 | 2.1:+51574929 | MS.gene065342:CDS |
AAACCGTTGACTGTTGCTCC+TGG | 0.454654 | 2.1:+51574969 | MS.gene065342:CDS |
TATCAGAACTCTATCATTCA+GGG | 0.457828 | 2.1:-51574075 | None:intergenic |
AATGACTTCAAGGGCAAAGA+TGG | 0.468491 | 2.1:+51575023 | MS.gene065342:CDS |
TTTGACAATCAAAGCCTTGA+AGG | 0.489756 | 2.1:-51572571 | None:intergenic |
TACACTGCAATCAAGCCTTT+GGG | 0.491403 | 2.1:+51573648 | MS.gene065342:CDS |
ATATATGCTGCAGATTGAAA+AGG | 0.493775 | 2.1:+51574520 | MS.gene065342:intron |
CTGAAGGATGATGACATTGT+TGG | 0.495789 | 2.1:+51574017 | MS.gene065342:CDS |
TCTGCTCGACATGTTAGGAT+TGG | 0.504109 | 2.1:+51572531 | MS.gene065342:CDS |
AGGTGGTGGCAGTTGGTCCC+GGG | 0.515221 | 2.1:+51574922 | MS.gene065342:intron |
TTCAAAGTATGCTGGTACTG+AGG | 0.520573 | 2.1:+51573965 | MS.gene065342:CDS |
GCCTTGAAGGACCTACGAGC+AGG | 0.526587 | 2.1:-51572558 | None:intergenic |
GAGGTGGTTGCCGTTGGAGA+AGG | 0.528875 | 2.1:+51573765 | MS.gene065342:CDS |
CTTGAGGAGTTCAGATGTCA+TGG | 0.532308 | 2.1:+51575061 | MS.gene065342:CDS |
GGTACTGAGGTGGACTTCAA+TGG | 0.535132 | 2.1:+51573978 | MS.gene065342:CDS |
GAGTACAGAACTGTGTTCCC+AGG | 0.548022 | 2.1:-51574987 | None:intergenic |
TTCCCAGGAGCAACAGTCAA+CGG | 0.549559 | 2.1:-51574972 | None:intergenic |
AACCGTTGACTGTTGCTCCT+GGG | 0.553638 | 2.1:+51574970 | MS.gene065342:CDS |
CCCGGGCTTGTGGATGAGGA+AGG | 0.557286 | 2.1:+51574939 | MS.gene065342:CDS |
GTTGTCTATTCAAAGTATGC+TGG | 0.560205 | 2.1:+51573957 | MS.gene065342:CDS |
GGAGGTGAGGTGGTTGCCGT+TGG | 0.560930 | 2.1:+51573759 | MS.gene065342:CDS |
GGAGCGTTGCATCCTTTGAA+GGG | 0.562553 | 2.1:+51572481 | MS.gene065342:CDS |
CCAAGTTGAAATTAGTGTGA+AGG | 0.567424 | 2.1:+51573806 | MS.gene065342:CDS |
TGATGGTCGAAGCCCTTCAA+AGG | 0.567520 | 2.1:-51572493 | None:intergenic |
AAGTGTCTTTCCTTCTCCAA+CGG | 0.569767 | 2.1:-51573775 | None:intergenic |
TGAAAAGCATCTTCTTCTGA+AGG | 0.571402 | 2.1:+51574001 | MS.gene065342:CDS |
CCTTCCTCATCCACAAGCCC+GGG | 0.573609 | 2.1:-51574939 | None:intergenic |
GAATAGACAACTTGTGCACC+TGG | 0.575907 | 2.1:-51573945 | None:intergenic |
GTTGGAGAAGGAAAGACACT+TGG | 0.579860 | 2.1:+51573777 | MS.gene065342:CDS |
AGGCGGTTTGTTTCTTACAG+AGG | 0.589539 | 2.1:+51574559 | MS.gene065342:CDS |
CAGAAGAGAAGACTCAGAGT+GGG | 0.589594 | 2.1:+51573700 | MS.gene065342:CDS |
AAAACACAGGTGGTGGCAGT+TGG | 0.590024 | 2.1:+51574915 | MS.gene065342:intron |
ATCAGAACTCTATCATTCAG+GGG | 0.593254 | 2.1:-51574074 | None:intergenic |
CATGACATCTGAACTCCTCA+AGG | 0.608574 | 2.1:-51575060 | None:intergenic |
ATAAGTACCCTGTCACCCAA+AGG | 0.609358 | 2.1:-51573663 | None:intergenic |
AATCAAGCCTTTGGGTGACA+GGG | 0.609714 | 2.1:+51573656 | MS.gene065342:CDS |
GTTTCTTACAGAGGCAACCA+AGG | 0.611857 | 2.1:+51574568 | MS.gene065342:CDS |
AACAAAGCCTCAAGGAGGTG+AGG | 0.613391 | 2.1:+51573746 | MS.gene065342:CDS |
TATGCTGCAGATTGAAAAGG+CGG | 0.624112 | 2.1:+51574523 | MS.gene065342:intron |
AAAGTATGCTGGTACTGAGG+TGG | 0.625111 | 2.1:+51573968 | MS.gene065342:CDS |
GCAGAAGAGAAGACTCAGAG+TGG | 0.644549 | 2.1:+51573699 | MS.gene065342:CDS |
AGTGCTCAAACAAAGCCTCA+AGG | 0.651229 | 2.1:+51573738 | MS.gene065342:CDS |
GGATTGGTAATCCTGCTCGT+AGG | 0.652074 | 2.1:+51572547 | MS.gene065342:CDS |
TACGCTGGTAATGACTTCAA+GGG | 0.655719 | 2.1:+51575014 | MS.gene065342:CDS |
TTGGAGAAGGAAAGACACTT+GGG | 0.658187 | 2.1:+51573778 | MS.gene065342:CDS |
GCAACCACCTCACCTCCTTG+AGG | 0.660430 | 2.1:-51573753 | None:intergenic |
AAAGCCTCAAGGAGGTGAGG+TGG | 0.661356 | 2.1:+51573749 | MS.gene065342:CDS |
GTTCTGTACTCCAAATACGC+TGG | 0.690424 | 2.1:+51574999 | MS.gene065342:CDS |
CAGCATCATCAATTTCAACG+AGG | 0.718872 | 2.1:+51572460 | MS.gene065342:CDS |
GCTCAAACAAAGCCTCAAGG+AGG | 0.723993 | 2.1:+51573741 | MS.gene065342:CDS |
AGAATGAAAATAAACCTTGG+GGG | 0.756557 | 2.1:-51572610 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCATAAAATTGTTAAAAGA+TGG | - | chr2.1:51573588-51573607 | None:intergenic | 15.0% |
!!! | ATCATTCTTTAATTTTTCTT+GGG | + | chr2.1:51573867-51573886 | MS.gene065342:intron | 15.0% |
!!! | TTCATTTTTTAATTTTGATC+TGG | + | chr2.1:51574163-51574182 | MS.gene065342:intron | 15.0% |
!! | AAAAGAATGAAAATAAACCT+TGG | - | chr2.1:51572616-51572635 | None:intergenic | 20.0% |
!! | AAAAGATATTCATGAGAAAT+AGG | - | chr2.1:51574874-51574893 | None:intergenic | 20.0% |
!! | AAAATGCATAATTGATGTAT+TGG | + | chr2.1:51573538-51573557 | MS.gene065342:intron | 20.0% |
!! | AAAGAATGAAAATAAACCTT+GGG | - | chr2.1:51572615-51572634 | None:intergenic | 20.0% |
!! | AAATTGTGCATCAAAATTTA+AGG | - | chr2.1:51573295-51573314 | None:intergenic | 20.0% |
!! | AATTGTGCATCAAAATTTAA+GGG | - | chr2.1:51573294-51573313 | None:intergenic | 20.0% |
!! | AATTTGCAGATATGATTTAA+AGG | - | chr2.1:51574352-51574371 | None:intergenic | 20.0% |
!!! | ATAAAATTGCTTTTTCAGAT+TGG | + | chr2.1:51572943-51572962 | MS.gene065342:intron | 20.0% |
!!! | CTATAATTTTATGACACAAA+AGG | - | chr2.1:51572885-51572904 | None:intergenic | 20.0% |
!!! | CTTTTGTGTCATAAAATTAT+AGG | + | chr2.1:51572883-51572902 | MS.gene065342:intron | 20.0% |
!!! | GATCATTCTTTAATTTTTCT+TGG | + | chr2.1:51573866-51573885 | MS.gene065342:intron | 20.0% |
!!! | TATAATTTTGATGTTGAATG+TGG | + | chr2.1:51573257-51573276 | MS.gene065342:intron | 20.0% |
!!! | TTTTGTAAAAATTTGTCTTG+CGG | + | chr2.1:51573324-51573343 | MS.gene065342:intron | 20.0% |
! | AAGAATGAAAATAAACCTTG+GGG | - | chr2.1:51572614-51572633 | None:intergenic | 25.0% |
! | AATAATTGTTTCATCTCCAT+TGG | - | chr2.1:51573014-51573033 | None:intergenic | 25.0% |
! | AATTAAAGAATGATCATCGA+AGG | - | chr2.1:51573861-51573880 | None:intergenic | 25.0% |
! | AGTGATGAAAACAAAATCAA+CGG | + | chr2.1:51574221-51574240 | MS.gene065342:intron | 25.0% |
! | GACAATTTGAAAGAGTAATT+TGG | + | chr2.1:51573068-51573087 | MS.gene065342:intron | 25.0% |
! | TACAATTTCAATACCCAAAA+TGG | + | chr2.1:51573124-51573143 | MS.gene065342:intron | 25.0% |
! | TGCTACATTTAAATCTTAAG+TGG | - | chr2.1:51574697-51574716 | None:intergenic | 25.0% |
! | TTAAATCTTAAGTGGATGTT+GGG | - | chr2.1:51574663-51574682 | None:intergenic | 25.0% |
! | TTGGACATTTAAATCTTAAG+TGG | - | chr2.1:51574671-51574690 | None:intergenic | 25.0% |
! | TTTAAATCTTAAGTGGATGT+TGG | - | chr2.1:51574664-51574683 | None:intergenic | 25.0% |
! | TTTACTAGTGCATATGTTTA+AGG | + | chr2.1:51573230-51573249 | MS.gene065342:intron | 25.0% |
!! | AACATGTTTTCAAACAAAGA+AGG | - | chr2.1:51574632-51574651 | None:intergenic | 25.0% |
!! | AGTGTTATTGATATTGAAGA+AGG | + | chr2.1:51572766-51572785 | MS.gene065342:intron | 25.0% |
!! | AGTTTTGCTTATATTCTTGT+TGG | + | chr2.1:51574116-51574135 | MS.gene065342:intron | 25.0% |
!! | ATATAAGCAAAACTCTAAAG+AGG | - | chr2.1:51574110-51574129 | None:intergenic | 25.0% |
!! | CAGGGTACTTATAAAAATAA+AGG | + | chr2.1:51573674-51573693 | MS.gene065342:CDS | 25.0% |
!! | TTAATTTTTCTTGGGAAGAA+GGG | + | chr2.1:51573875-51573894 | MS.gene065342:intron | 25.0% |
!!! | TGAGATGTCTTATTTTTTAG+AGG | + | chr2.1:51574318-51574337 | MS.gene065342:intron | 25.0% |
!!! | TTTAATTTTTCTTGGGAAGA+AGG | + | chr2.1:51573874-51573893 | MS.gene065342:intron | 25.0% |
AAAATTTCGGTTGTCTAGTT+TGG | + | chr2.1:51573499-51573518 | MS.gene065342:intron | 30.0% | |
AAGTTGCACAAAATATGACA+TGG | - | chr2.1:51574406-51574425 | None:intergenic | 30.0% | |
AATAATCAATGTCACTCGTT+AGG | + | chr2.1:51574792-51574811 | MS.gene065342:intron | 30.0% | |
AATTTCAATACCCAAAATGG+TGG | + | chr2.1:51573127-51573146 | MS.gene065342:intron | 30.0% | |
AGAATGAAAATAAACCTTGG+GGG | - | chr2.1:51572613-51572632 | None:intergenic | 30.0% | |
AGTTGCACAAAATATGACAT+GGG | - | chr2.1:51574405-51574424 | None:intergenic | 30.0% | |
ATAAAATTATAGGCATCTGG+CGG | + | chr2.1:51572893-51572912 | MS.gene065342:intron | 30.0% | |
ATATATGCTGCAGATTGAAA+AGG | + | chr2.1:51574520-51574539 | MS.gene065342:intron | 30.0% | |
ATTGTTAAAAGATGGAGCTT+TGG | - | chr2.1:51573580-51573599 | None:intergenic | 30.0% | |
CAAAATTGAACCACTCAATA+TGG | + | chr2.1:51574191-51574210 | MS.gene065342:intron | 30.0% | |
CACGCATGAATAACAATTTA+TGG | + | chr2.1:51574255-51574274 | MS.gene065342:intron | 30.0% | |
CTTTGATATCATCAGTTTCA+AGG | - | chr2.1:51574046-51574065 | None:intergenic | 30.0% | |
GATGAAACAATTATTTGAGG+TGG | + | chr2.1:51573019-51573038 | MS.gene065342:intron | 30.0% | |
GGAGATGAAACAATTATTTG+AGG | + | chr2.1:51573016-51573035 | MS.gene065342:intron | 30.0% | |
GTCATAAAATTATAGGCATC+TGG | + | chr2.1:51572890-51572909 | MS.gene065342:intron | 30.0% | |
TATCAGAACTCTATCATTCA+GGG | - | chr2.1:51574078-51574097 | None:intergenic | 30.0% | |
TTATCAGAACTCTATCATTC+AGG | - | chr2.1:51574079-51574098 | None:intergenic | 30.0% | |
! | GAATGATAGAGTTCTGATAA+AGG | + | chr2.1:51574079-51574098 | MS.gene065342:CDS | 30.0% |
! | TGCAACTTTATTTCTCATAC+AGG | + | chr2.1:51574418-51574437 | MS.gene065342:intron | 30.0% |
! | TTTATTTCTCATACAGGAGT+AGG | + | chr2.1:51574424-51574443 | MS.gene065342:intron | 30.0% |
!! | ATGTGTTGTTTGTAAAACAC+AGG | + | chr2.1:51574902-51574921 | MS.gene065342:intron | 30.0% |
!! | ATTGAAGAAGGTTGTCATTT+TGG | + | chr2.1:51572778-51572797 | MS.gene065342:intron | 30.0% |
!! | ATTGAGTTCTGAAAGGATAA+TGG | + | chr2.1:51573189-51573208 | MS.gene065342:intron | 30.0% |
!! | TGTTTGAATTGAGTTCTGAA+AGG | + | chr2.1:51573182-51573201 | MS.gene065342:intron | 30.0% |
!!! | TCATTTTGGTTAGAAGAAAG+TGG | + | chr2.1:51572792-51572811 | MS.gene065342:intron | 30.0% |
AAGCTTACTGTTCCAAATGA+AGG | - | chr2.1:51574599-51574618 | None:intergenic | 35.0% | |
AATTGTTTCATCTCCATTGG+AGG | - | chr2.1:51573011-51573030 | None:intergenic | 35.0% | |
ACTCACTTATCCATATTGAG+TGG | - | chr2.1:51574204-51574223 | None:intergenic | 35.0% | |
AGACCTCAACAAAACATAAG+AGG | - | chr2.1:51574467-51574486 | None:intergenic | 35.0% | |
AGTAGGATTCAAAGACACTA+TGG | + | chr2.1:51574441-51574460 | MS.gene065342:intron | 35.0% | |
AGTTTGGTTGGATATCGAAA+AGG | - | chr2.1:51573369-51573388 | None:intergenic | 35.0% | |
ATCAGAACTCTATCATTCAG+GGG | - | chr2.1:51574077-51574096 | None:intergenic | 35.0% | |
CATCGAAGGTTTAATGACAT+CGG | - | chr2.1:51573847-51573866 | None:intergenic | 35.0% | |
CCTTCACACTAATTTCAACT+TGG | - | chr2.1:51573809-51573828 | None:intergenic | 35.0% | |
GAATGAAACTGAACACTTGA+TGG | - | chr2.1:51572513-51572532 | None:intergenic | 35.0% | |
GCATAATTGTTAACCCACTT+GGG | + | chr2.1:51573403-51573422 | MS.gene065342:intron | 35.0% | |
GCATATATTAAACCAGTCAG+TGG | - | chr2.1:51574508-51574527 | None:intergenic | 35.0% | |
GTTGTCTATTCAAAGTATGC+TGG | + | chr2.1:51573957-51573976 | MS.gene065342:CDS | 35.0% | |
TAATCGTGCTGAACATATTC+TGG | - | chr2.1:51574833-51574852 | None:intergenic | 35.0% | |
TATTCTTGTTGGATCCAAGT+TGG | + | chr2.1:51574127-51574146 | MS.gene065342:intron | 35.0% | |
TCTTCTTGATTGTGCATTTG+TGG | + | chr2.1:51572821-51572840 | MS.gene065342:intron | 35.0% | |
TGCAAATTATCTGATCGTCA+AGG | + | chr2.1:51574364-51574383 | MS.gene065342:intron | 35.0% | |
TTTGACAATCAAAGCCTTGA+AGG | - | chr2.1:51572574-51572593 | None:intergenic | 35.0% | |
TTTGGTATTTCGCAAATTCG+AGG | + | chr2.1:51573086-51573105 | MS.gene065342:intron | 35.0% | |
! | AACAATTATTTGAGGTGGTG+TGG | + | chr2.1:51573024-51573043 | MS.gene065342:intron | 35.0% |
! | AACAGAGTAAACCACCATTT+TGG | - | chr2.1:51573141-51573160 | None:intergenic | 35.0% |
! | ACAATTATTTGAGGTGGTGT+GGG | + | chr2.1:51573025-51573044 | MS.gene065342:intron | 35.0% |
! | ACAGAGTAAACCACCATTTT+GGG | - | chr2.1:51573140-51573159 | None:intergenic | 35.0% |
! | ATTTTCCCCGGTGAAAATTT+CGG | + | chr2.1:51573486-51573505 | MS.gene065342:intron | 35.0% |
! | CCAAGTTGAAATTAGTGTGA+AGG | + | chr2.1:51573806-51573825 | MS.gene065342:CDS | 35.0% |
! | TAGACAACCGAAATTTTCAC+CGG | - | chr2.1:51573496-51573515 | None:intergenic | 35.0% |
! | TGTTGTTTGTAAAACACAGG+TGG | + | chr2.1:51574905-51574924 | MS.gene065342:intron | 35.0% |
! | TTGGATATCGAAAAGGCTTT+TGG | - | chr2.1:51573362-51573381 | None:intergenic | 35.0% |
!! | AGTTCTGAAAGGATAATGGT+GGG | + | chr2.1:51573193-51573212 | MS.gene065342:intron | 35.0% |
!! | GTTTTGAGTACATTACCTTG+AGG | + | chr2.1:51575045-51575064 | MS.gene065342:CDS | 35.0% |
!! | TGAAAAGCATCTTCTTCTGA+AGG | + | chr2.1:51574001-51574020 | MS.gene065342:CDS | 35.0% |
AAGGCGGAAGAAAAAACTTC+AGG | + | chr2.1:51574539-51574558 | MS.gene065342:CDS | 40.0% | |
AAGTGTCTTTCCTTCTCCAA+CGG | - | chr2.1:51573778-51573797 | None:intergenic | 40.0% | |
AATGACTTCAAGGGCAAAGA+TGG | + | chr2.1:51575023-51575042 | MS.gene065342:CDS | 40.0% | |
AATTGTTAACCCACTTGGGT+TGG | + | chr2.1:51573407-51573426 | MS.gene065342:intron | 40.0% | |
ACCAAGGAGAAACCTTCATT+TGG | + | chr2.1:51574584-51574603 | MS.gene065342:CDS | 40.0% | |
ATAGAATCCAAGACCTTGAG+AGG | - | chr2.1:51573468-51573487 | None:intergenic | 40.0% | |
CAGCATCATCAATTTCAACG+AGG | + | chr2.1:51572460-51572479 | MS.gene065342:CDS | 40.0% | |
CGCATAATTGTTAACCCACT+TGG | + | chr2.1:51573402-51573421 | MS.gene065342:intron | 40.0% | |
CTGAAGGATGATGACATTGT+TGG | + | chr2.1:51574017-51574036 | MS.gene065342:CDS | 40.0% | |
GAAGTCATTACCAGCGTATT+TGG | - | chr2.1:51575012-51575031 | None:intergenic | 40.0% | |
TACACTGCAATCAAGCCTTT+GGG | + | chr2.1:51573648-51573667 | MS.gene065342:CDS | 40.0% | |
TATGCTGCAGATTGAAAAGG+CGG | + | chr2.1:51574523-51574542 | MS.gene065342:intron | 40.0% | |
TCCAAATGAAGGTTTCTCCT+TGG | - | chr2.1:51574588-51574607 | None:intergenic | 40.0% | |
TCTTTGTGTAGCAGTTTGGT+TGG | - | chr2.1:51573381-51573400 | None:intergenic | 40.0% | |
TGTTTGTAAAACACAGGTGG+TGG | + | chr2.1:51574908-51574927 | MS.gene065342:intron | 40.0% | |
TTCAAAGTATGCTGGTACTG+AGG | + | chr2.1:51573965-51573984 | MS.gene065342:CDS | 40.0% | |
TTCATTCTGCTCGACATGTT+AGG | + | chr2.1:51572526-51572545 | MS.gene065342:CDS | 40.0% | |
TTGGAGAAGGAAAGACACTT+GGG | + | chr2.1:51573778-51573797 | MS.gene065342:CDS | 40.0% | |
TTTCGCAAATTCGAGGTCAT+TGG | + | chr2.1:51573093-51573112 | MS.gene065342:intron | 40.0% | |
! | AGACAACCGAAATTTTCACC+GGG | - | chr2.1:51573495-51573514 | None:intergenic | 40.0% |
! | ATACGCTGGTAATGACTTCA+AGG | + | chr2.1:51575013-51575032 | MS.gene065342:CDS | 40.0% |
! | GTCTTGGATTCTATTTTCCC+CGG | + | chr2.1:51573474-51573493 | MS.gene065342:intron | 40.0% |
! | TACGCTGGTAATGACTTCAA+GGG | + | chr2.1:51575014-51575033 | MS.gene065342:CDS | 40.0% |
! | TCAAACAAAGAAGGTACAGC+AGG | - | chr2.1:51574623-51574642 | None:intergenic | 40.0% |
!! | GAGTTCTGAAAGGATAATGG+TGG | + | chr2.1:51573192-51573211 | MS.gene065342:intron | 40.0% |
!! | TGGCCTCTTATGTTTTGTTG+AGG | + | chr2.1:51574461-51574480 | MS.gene065342:intron | 40.0% |
!!! | TGTGTTTTGTTTGTACAGCC+AGG | + | chr2.1:51573927-51573946 | MS.gene065342:intron | 40.0% |
AATCAAGCCTTTGGGTGACA+GGG | + | chr2.1:51573656-51573675 | MS.gene065342:CDS | 45.0% | |
AGTGCTCAAACAAAGCCTCA+AGG | + | chr2.1:51573738-51573757 | MS.gene065342:CDS | 45.0% | |
ATAAGTACCCTGTCACCCAA+AGG | - | chr2.1:51573666-51573685 | None:intergenic | 45.0% | |
ATGATACACACCACCTCCAA+TGG | + | chr2.1:51572995-51573014 | MS.gene065342:intron | 45.0% | |
CAGAAGAGAAGACTCAGAGT+GGG | + | chr2.1:51573700-51573719 | MS.gene065342:CDS | 45.0% | |
CATGACATCTGAACTCCTCA+AGG | - | chr2.1:51575063-51575082 | None:intergenic | 45.0% | |
CTTGAGGAGTTCAGATGTCA+TGG | + | chr2.1:51575061-51575080 | MS.gene065342:CDS | 45.0% | |
GAATAGACAACTTGTGCACC+TGG | - | chr2.1:51573948-51573967 | None:intergenic | 45.0% | |
GCGATCTTTGTGTAGCAGTT+TGG | - | chr2.1:51573385-51573404 | None:intergenic | 45.0% | |
GCGGAAGAAAAAACTTCAGG+CGG | + | chr2.1:51574542-51574561 | MS.gene065342:CDS | 45.0% | |
GTACACTGCAATCAAGCCTT+TGG | + | chr2.1:51573647-51573666 | MS.gene065342:intron | 45.0% | |
GTTCTGTACTCCAAATACGC+TGG | + | chr2.1:51574999-51575018 | MS.gene065342:CDS | 45.0% | |
GTTGGAGAAGGAAAGACACT+TGG | + | chr2.1:51573777-51573796 | MS.gene065342:CDS | 45.0% | |
GTTTCTTACAGAGGCAACCA+AGG | + | chr2.1:51574568-51574587 | MS.gene065342:CDS | 45.0% | |
TCTGCTCGACATGTTAGGAT+TGG | + | chr2.1:51572531-51572550 | MS.gene065342:CDS | 45.0% | |
TGTTTCATCTCCATTGGAGG+TGG | - | chr2.1:51573008-51573027 | None:intergenic | 45.0% | |
TTGATTGCAGTGTACTGCAC+AGG | - | chr2.1:51573642-51573661 | None:intergenic | 45.0% | |
! | AAAGTATGCTGGTACTGAGG+TGG | + | chr2.1:51573968-51573987 | MS.gene065342:CDS | 45.0% |
! | AGGCGGTTTGTTTCTTACAG+AGG | + | chr2.1:51574559-51574578 | MS.gene065342:CDS | 45.0% |
! | GACAACCGAAATTTTCACCG+GGG | - | chr2.1:51573494-51573513 | None:intergenic | 45.0% |
! | GCTTTTAGATAGCCACTGAC+TGG | + | chr2.1:51574493-51574512 | MS.gene065342:intron | 45.0% |
!! | GGCTTTGTTTGAGCACTTGA+TGG | - | chr2.1:51573735-51573754 | None:intergenic | 45.0% |
!! | TTAAACTAAATTAAATAAAA+TGG | - | chr2.1:51572747-51572766 | None:intergenic | 5.0% |
!!! | ATGTTTTTTTTTTTTTTTTT+TGG | + | chr2.1:51572690-51572709 | MS.gene065342:intron | 5.0% |
!!! | TGTTTTTTTTTTTTTTTTTT+GGG | + | chr2.1:51572691-51572710 | MS.gene065342:intron | 5.0% |
AACAAAGCCTCAAGGAGGTG+AGG | + | chr2.1:51573746-51573765 | MS.gene065342:CDS | 50.0% | |
AACCTTGGGGGTAACAACAG+TGG | - | chr2.1:51572601-51572620 | None:intergenic | 50.0% | |
CAATCAAGCCTTTGGGTGAC+AGG | + | chr2.1:51573655-51573674 | MS.gene065342:CDS | 50.0% | |
GAGTACAGAACTGTGTTCCC+AGG | - | chr2.1:51574990-51575009 | None:intergenic | 50.0% | |
GCAGAAGAGAAGACTCAGAG+TGG | + | chr2.1:51573699-51573718 | MS.gene065342:CDS | 50.0% | |
GCTCAAACAAAGCCTCAAGG+AGG | + | chr2.1:51573741-51573760 | MS.gene065342:CDS | 50.0% | |
TGATGGTCGAAGCCCTTCAA+AGG | - | chr2.1:51572496-51572515 | None:intergenic | 50.0% | |
TGTCTAAATGCCCCCTTCAG+AGG | - | chr2.1:51573052-51573071 | None:intergenic | 50.0% | |
TTCCCAGGAGCAACAGTCAA+CGG | - | chr2.1:51574975-51574994 | None:intergenic | 50.0% | |
! | AAAACACAGGTGGTGGCAGT+TGG | + | chr2.1:51574915-51574934 | MS.gene065342:intron | 50.0% |
! | AAACCGTTGACTGTTGCTCC+TGG | + | chr2.1:51574969-51574988 | MS.gene065342:CDS | 50.0% |
! | AACCGTTGACTGTTGCTCCT+GGG | + | chr2.1:51574970-51574989 | MS.gene065342:CDS | 50.0% |
! | GGATTGGTAATCCTGCTCGT+AGG | + | chr2.1:51572547-51572566 | MS.gene065342:CDS | 50.0% |
! | GGTACTGAGGTGGACTTCAA+TGG | + | chr2.1:51573978-51573997 | MS.gene065342:CDS | 50.0% |
! | GTTGGATCCAAGTTGGCGAA+TGG | + | chr2.1:51574134-51574153 | MS.gene065342:intron | 50.0% |
!! | AGGAGCGTTGCATCCTTTGA+AGG | + | chr2.1:51572480-51572499 | MS.gene065342:CDS | 50.0% |
!! | GGAGCGTTGCATCCTTTGAA+GGG | + | chr2.1:51572481-51572500 | MS.gene065342:CDS | 50.0% |
AAAGCCTCAAGGAGGTGAGG+TGG | + | chr2.1:51573749-51573768 | MS.gene065342:CDS | 55.0% | |
CTTGGAGTGTGCTCCTCTCA+AGG | + | chr2.1:51573452-51573471 | MS.gene065342:intron | 55.0% | |
CTTGGGGGTAACAACAGTGG+CGG | - | chr2.1:51572598-51572617 | None:intergenic | 55.0% | |
GTGTGCTCCTCTCAAGGTCT+TGG | + | chr2.1:51573458-51573477 | MS.gene065342:intron | 55.0% | |
TCCTGCTCGTAGGTCCTTCA+AGG | + | chr2.1:51572557-51572576 | MS.gene065342:CDS | 55.0% | |
! | CTTGAGAGGAGCACACTCCA+AGG | - | chr2.1:51573454-51573473 | None:intergenic | 55.0% |
! | GGATCCAAGTTGGCGAATGG+CGG | + | chr2.1:51574137-51574156 | MS.gene065342:intron | 55.0% |
!! | TTAACCCACTTGGGTTGGCC+TGG | + | chr2.1:51573412-51573431 | MS.gene065342:intron | 55.0% |
ACCACCAGGCCAACCCAAGT+GGG | - | chr2.1:51573419-51573438 | None:intergenic | 60.0% | |
ACCACCGCCATTCGCCAACT+TGG | - | chr2.1:51574144-51574163 | None:intergenic | 60.0% | |
AGGTGGTGTGGGTCCTCTGA+AGG | + | chr2.1:51573036-51573055 | MS.gene065342:intron | 60.0% | |
CCTTCCTCATCCACAAGCCC+GGG | - | chr2.1:51574942-51574961 | None:intergenic | 60.0% | |
CGCCACTGTTGTTACCCCCA+AGG | + | chr2.1:51572596-51572615 | MS.gene065342:CDS | 60.0% | |
GAGGTGGTTGCCGTTGGAGA+AGG | + | chr2.1:51573765-51573784 | MS.gene065342:CDS | 60.0% | |
GCAACCACCTCACCTCCTTG+AGG | - | chr2.1:51573756-51573775 | None:intergenic | 60.0% | |
GCCTTCCTCATCCACAAGCC+CGG | - | chr2.1:51574943-51574962 | None:intergenic | 60.0% | |
GCCTTGAAGGACCTACGAGC+AGG | - | chr2.1:51572561-51572580 | None:intergenic | 60.0% | |
GGTGGTGTGGGTCCTCTGAA+GGG | + | chr2.1:51573037-51573056 | MS.gene065342:intron | 60.0% | |
! | GTGGTGTGGGTCCTCTGAAG+GGG | + | chr2.1:51573038-51573057 | MS.gene065342:intron | 60.0% |
! | TCCAAGTTGGCGAATGGCGG+TGG | + | chr2.1:51574140-51574159 | MS.gene065342:intron | 60.0% |
! | TGGTGTGGGTCCTCTGAAGG+GGG | + | chr2.1:51573039-51573058 | MS.gene065342:intron | 60.0% |
!! | GTGGTGTTGGCTTGGGACCT+TGG | + | chr2.1:51573434-51573453 | MS.gene065342:intron | 60.0% |
!! | TGGCCTGGTGGTGTTGGCTT+GGG | + | chr2.1:51573427-51573446 | MS.gene065342:intron | 60.0% |
!! | TTGGCCTGGTGGTGTTGGCT+TGG | + | chr2.1:51573426-51573445 | MS.gene065342:intron | 60.0% |
!! | TTGGGTTGGCCTGGTGGTGT+TGG | + | chr2.1:51573421-51573440 | MS.gene065342:intron | 60.0% |
CACCACCAGGCCAACCCAAG+TGG | - | chr2.1:51573420-51573439 | None:intergenic | 65.0% | |
CCCGGGCTTGTGGATGAGGA+AGG | + | chr2.1:51574939-51574958 | MS.gene065342:CDS | 65.0% | |
GGAGGTGAGGTGGTTGCCGT+TGG | + | chr2.1:51573759-51573778 | MS.gene065342:CDS | 65.0% | |
GGTCCCAAGCCAACACCACC+AGG | - | chr2.1:51573433-51573452 | None:intergenic | 65.0% | |
TGGTCCCGGGCTTGTGGATG+AGG | + | chr2.1:51574935-51574954 | MS.gene065342:CDS | 65.0% | |
! | AGGTGGTGGCAGTTGGTCCC+GGG | + | chr2.1:51574922-51574941 | MS.gene065342:intron | 65.0% |
! | CAGGTGGTGGCAGTTGGTCC+CGG | + | chr2.1:51574921-51574940 | MS.gene065342:intron | 65.0% |
!! | ACCCACTTGGGTTGGCCTGG+TGG | + | chr2.1:51573415-51573434 | MS.gene065342:intron | 65.0% |
GGCAGTTGGTCCCGGGCTTG+TGG | + | chr2.1:51574929-51574948 | MS.gene065342:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 51572441 | 51575097 | 51572441 | ID=MS.gene065342 |
chr2.1 | mRNA | 51572441 | 51575097 | 51572441 | ID=MS.gene065342.t1;Parent=MS.gene065342 |
chr2.1 | exon | 51572441 | 51572617 | 51572441 | ID=MS.gene065342.t1.exon1;Parent=MS.gene065342.t1 |
chr2.1 | CDS | 51572441 | 51572617 | 51572441 | ID=cds.MS.gene065342.t1;Parent=MS.gene065342.t1 |
chr2.1 | exon | 51573648 | 51573827 | 51573648 | ID=MS.gene065342.t1.exon2;Parent=MS.gene065342.t1 |
chr2.1 | CDS | 51573648 | 51573827 | 51573648 | ID=cds.MS.gene065342.t1;Parent=MS.gene065342.t1 |
chr2.1 | exon | 51573945 | 51574100 | 51573945 | ID=MS.gene065342.t1.exon3;Parent=MS.gene065342.t1 |
chr2.1 | CDS | 51573945 | 51574100 | 51573945 | ID=cds.MS.gene065342.t1;Parent=MS.gene065342.t1 |
chr2.1 | exon | 51574533 | 51574610 | 51574533 | ID=MS.gene065342.t1.exon4;Parent=MS.gene065342.t1 |
chr2.1 | CDS | 51574533 | 51574610 | 51574533 | ID=cds.MS.gene065342.t1;Parent=MS.gene065342.t1 |
chr2.1 | exon | 51574924 | 51575097 | 51574924 | ID=MS.gene065342.t1.exon5;Parent=MS.gene065342.t1 |
chr2.1 | CDS | 51574924 | 51575097 | 51574924 | ID=cds.MS.gene065342.t1;Parent=MS.gene065342.t1 |
Gene Sequence |
Protein sequence |