AlfalfaGEDB | MS.gene025732

M. sativa cultivar XinJiangDaYe / MS.gene025732

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0097159 GO:1901265 GO:1901363
PFAM: PF00732.22 PF05199.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025732.t1	XP_003611166.2	95.4	545	25	0	36	580	1	545	2.70E-304	1053.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025732.t1	Q9S746	55.8	529	227	3	48	573	63	587	2.7e-167	590.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025732.t1	G7KER7	95.4	545	25	0	36	580	1	545	2.0e-304	1053.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene016742	MS.gene025732	PPI
MS.gene016743	MS.gene025732	PPI
MS.gene016758	MS.gene025732	PPI
MS.gene057883	MS.gene025732	PPI
MS.gene057884	MS.gene025732	PPI
MS.gene057886	MS.gene025732	PPI
MS.gene070492	MS.gene025732	PPI
MS.gene070503	MS.gene025732	PPI
MS.gene070505	MS.gene025732	PPI
MS.gene070507	MS.gene025732	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025732.t1	MTR_5g011020	95.413	545	25	0	36	580	1	545	0.0	1081
MS.gene025732.t1	MTR_5g011010	87.279	566	72	0	14	579	14	579	0.0	1035
MS.gene025732.t1	MTR_1g101770	57.732	582	230	6	1	575	1	573	0.0	663
MS.gene025732.t1	MTR_2g100070	52.961	591	257	6	1	575	4	589	0.0	618
MS.gene025732.t1	MTR_8g016320	54.152	578	245	6	9	575	13	581	0.0	609
MS.gene025732.t1	MTR_4g005860	45.636	550	255	8	36	573	42	559	4.38e-156	459
MS.gene025732.t1	MTR_1g101760	50.491	509	174	9	1	483	1	457	2.21e-150	441
MS.gene025732.t1	MTR_5g041340	40.948	591	262	13	8	578	13	536	4.21e-137	409
MS.gene025732.t1	MTR_5g024110	58.929	56	23	0	184	239	23	78	1.06e-12	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025732.t1	AT1G12570	61.578	583	189	9	6	574	8	569	0.0	717
MS.gene025732.t1	AT5G51950	57.639	576	232	6	4	573	5	574	0.0	659
MS.gene025732.t1	AT5G51950	57.414	580	229	7	4	573	5	576	0.0	659
MS.gene025732.t1	AT3G56060	56.304	579	239	7	1	575	1	569	0.0	650
MS.gene025732.t1	AT5G51950	59.375	544	212	5	36	573	1	541	0.0	646
MS.gene025732.t1	AT1G72970	55.639	532	229	3	46	574	61	588	0.0	605
MS.gene025732.t1	AT5G51930	54.973	553	237	3	29	578	7	550	0.0	605
MS.gene025732.t1	AT5G51930	53.832	561	239	5	6	563	39	582	0.0	590
MS.gene025732.t1	AT1G72970	54.426	531	210	3	46	574	61	561	0.0	576
MS.gene025732.t1	AT1G73050	48.901	546	236	8	35	573	41	550	2.40e-168	490

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Find 0 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAGTAAGTGCTAGAAA+AGG	-	37869:7563-7582	MS.gene025732:intergenic	30.0%
AACACTATCCCAAAATCATA+GGG	+	37869:6971-6990	MS.gene025732:CDS	30.0%
AACCCTATGTAATGTTCTAT+AGG	-	37869:6758-6777	MS.gene025732:intergenic	30.0%
AAGTTGGAAATTCTATACGA+TGG	+	37869:6499-6518	MS.gene025732:intron	30.0%
AATATTGACGATTAAGAGAG+TGG	-	37869:10512-10531	MS.gene025732:intergenic	30.0%
AATGCTACACTATATCCAAA+AGG	-	37869:10430-10449	MS.gene025732:intergenic	30.0%
ACATGGTGAAGTATATTTAC+TGG	-	37869:8723-8742	MS.gene025732:intergenic	30.0%
ATATCAAATGGTTTGAGCTA+AGG	-	37869:6676-6695	MS.gene025732:intergenic	30.0%
ATGACTATATGGCATTATCA+TGG	+	37869:11404-11423	MS.gene025732:CDS	30.0%
ATTAACAAACACAAGAAACC+AGG	-	37869:10563-10582	MS.gene025732:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
37869	gene	6048	11755	6048	ID=MS.gene025732
37869	mRNA	6048	11755	6048	ID=MS.gene025732.t1;Parent=MS.gene025732
37869	exon	6048	6129	6048	ID=MS.gene025732.t1.exon1;Parent=MS.gene025732.t1
37869	CDS	6048	6129	6048	ID=cds.MS.gene025732.t1;Parent=MS.gene025732.t1
37869	exon	6862	7207	6862	ID=MS.gene025732.t1.exon2;Parent=MS.gene025732.t1
37869	CDS	6862	7207	6862	ID=cds.MS.gene025732.t1;Parent=MS.gene025732.t1
37869	exon	8002	8306	8002	ID=MS.gene025732.t1.exon3;Parent=MS.gene025732.t1
37869	CDS	8002	8306	8002	ID=cds.MS.gene025732.t1;Parent=MS.gene025732.t1
37869	exon	9140	9528	9140	ID=MS.gene025732.t1.exon4;Parent=MS.gene025732.t1
37869	CDS	9140	9528	9140	ID=cds.MS.gene025732.t1;Parent=MS.gene025732.t1
37869	exon	10996	11561	10996	ID=MS.gene025732.t1.exon5;Parent=MS.gene025732.t1
37869	CDS	10996	11561	10996	ID=cds.MS.gene025732.t1;Parent=MS.gene025732.t1
37869	exon	11701	11755	11701	ID=MS.gene025732.t1.exon6;Parent=MS.gene025732.t1
37869	CDS	11701	11755	11701	ID=cds.MS.gene025732.t1;Parent=MS.gene025732.t1

Gene Sequence

>MS.gene025732

ATGAGTGCTTTGCTGTGGAGGTTAATTCTTCTTTTTCTTGCTGGGATTGTTTTCTCTCCTAAACATTGTGTATCTTTAAAAGGTAATAGTAATATATTTTGCTTATCTGCATTTTGCTCGGTAACTAATTGCAGCTAAATAAGATTGTCAAATCAGTAACAATGTGTTAGTAACTAATATGGATTATATTATTGAGTATGATTGAATGCGCATCATAACAAAGGGAACCACTTCGAAATTGCTTACTTAACGAGGGAAAAAAAAAAAAAAGCAAAGTAGCATGGTTTATGGTTATATTATATATGGAGAATGCTAACATTAACCAATGCCCTAGGGCACTAGTTAGCAAAACTCTAGCGTCGATTCAAGCATAAGACGGTCCAAGTTCTTATTTTTTTGGCTTACCTTTTAGACCTCCAAACAAACTATGTTTTACTAATATTAAATATGAAAGTTGGAAATTCTATACGATGGCAATGTAGCTCAACTGGTTGAGCAACTATCTCTTCTTGACTAGGTTGCATGATCAAATTTGACTATTTGAGTGACAACTTGTTTTTTATTTTTGTACAGAAAAACTTCATTTTAATATTCAATTTATTTAAACCTTAAAATTTGTTAGACCCCTTAGCTCAAACCATTTGATATCTAATGACTAATCCTCAATTAATTTCTCAATTTGGACAAATCAAACGGATTTTAATCAACCTATAGAACATTACATAGGGTTTTATTTTATTTACCAATAAATAAATGTTGCTAGCAATTGGAAAAGGTGTAAAACTAATTAAAAAAAAATCATGATTATATACAGATACAGGTAGAAAATACAGTTTTATGCAAGATGCAACTTCAGCACCAATCATATCCTTCTATGATTACATCATAATTGGTGGTGGCACTGCAGGGTGTCCTTTGGCTGCAACACTATCCCAAAATCATAGGGTTTTGGTGCTTGAACGTGGTGGATCACCTTATGGCAACCCGAACATAACAAATTTAAGTGCCTTTGGTGTTGCACTTTCTGATACATCTCCTTCCTCTCCTGCTCAACGATTCATTTCTGAAGATGGTGTTATCAACTCAAGAGCTCGTGTTCTAGGTGGTGGAAGTTGTTTGAATGCTGGCTTCTATACTCGTGCAAGCCCTCGCTACGTAAGGTACGTAACACAAAAATAAACTATTCTCTCAAGATGGTCAGGAGTAAGTCTACTATGGTCACAACTCCAAATCTAATGATTTATACCTACATATAAAGTTGATAGTAAGTTTTGGTTTAGTCATTTTTTCTCCTAACTTGTTGCTTTTATTTAAACTACTATATGTACAATATCATTTGTATGGGTCAAGTAATGTCATGATTTTCTATCTGATTAAACTTTTTAAATAATGCCTAAAACTTTGTAACTTTTTTTTCTCTTCATTTTTATAGAGAAATTCATGGTACACTTGTATAAATAAGTTTCATATTTATTCACACGATGAGTGTTAAGATAGTATTTTTTTTTAACACCTTTTCTAGCACTTACTCATTTAATATATAAAATCAATAAGGGTGCCGGGCTTTACAAATGAGTCACACAGAAAGTTGTCGGACCTATATTAATTTTAACCAATAAAAAAGTAAATGTTGGAGAAAGTGTTAAAAATCAAGTGTCATCTTATTGACATACAGCTTAGATTAAATATCTTATAACACAACTATTTGTACAAATTATTTAAGAGACTCAAGAGCACTTAAAAGAGATATAATAGTAGTGTCAAGTTCGAATTCTAGAAACACAACACCAACATTAAAATTCTACATAATAAAGTTTGTTGTCAATATAGTCCTATCCAACTCAAAGATTGCGATACTCAATTTACACAAAAAGAAAAGTGTTGAAGAGAGTCTATTAAAATAGTTTATGACATTTTGATAAAGCTGATTTTAAGCATATATTTATGTTGTTAGTGAAGCTGGTTGGGATGAAAAATTAGTGAAGCAATCATATAAATGGGTGGAGAGAGTAGTGGCATTTTGGCCTCCTATGCGTCAATGGCAATCAGCAGTTAGGGATGGATTATTGGAAGTAGGTGTATTGCCTGACAATGGCTTTACATATGATCATATTCATGGGACTAAGGTTGGAGGTACAATCTTTGACCAAAATGGTCAAAGACACACTGCAGCTGATCTTTTGGAATATGCTAACATCAACACAATTACTCTTCTTTTGCATGCCACCGTTCATAGAATCTTGTTTACAAAAAGCAAAGGTTTCATTCTAATTCTACATCATATGATTCATTTCATGCATAAAAAAAAATGCAGTGTGCATTCTTTTACTAGTAAATGAATATTTTAGTTTTCGAAATTGTAAGATGTAGGATAATTTAGTTCTTCAAATTGACAAATTGATAAATCGGTATATTTAATTAAAGAAAATCAATCAATTTAGCTCCTACATTAAGATATCTTGTTTTTTAACATCAATGACAATTAAAGAAAAACATAAATATTGATTTGAATAGTCTCTTGTTATGGTGAAGGTAACATTGTGAATTATATTAGTTGGTCCATCATGCTGAACTTAAAAATAACCATCTATTTAATAATATACTTTTTAATATTGACTATTACATTTTTATATTATTAACTCGATGATTATTTTTTAGTTCACTTTGATGGACCAGTAAATATACTTCACCATGTTGTCCTGTGAGCATATCTTAGTCGACAAGAACATTTTGCATTATATATGCAGATGTCGGGGTTTGAATTTCTCACTTATTGACCTTAAAATGTTACAATTCAAGTCTACTTGACAAACAAAAAAAAAATCACCATGTTAACCTTTGCCTCTTTGTTATATCAAGATAAATATAGAACCTTTAAAATTAAAGTGCTAAATTTGAAAAATGATTAAATAGACTAATTTTGTTCAATTTGAAAGACTAAATTGCTATTTCACAAATCGGAATGACTAAATTGAATGACTCTAACTTTGAAGTACTAAAATGCTAATTTACTCATACTTTTAATATTTATTTTGTTATCTCGGTCCATTTAATGATGATTATGTGAATGCATTGTGCATGATATCAAACAGGTGGATTAAGTTCAAAGCCAATTGCACATGGAGTTGTATTCAAGGATGCACGAGGGACAGAACATAGGGCATACTTGAAACAAGGGATTAGGAATGAGATCATAGTATCAGCTGGTGCACTAGGTAGCCCACAACTTCTGATGTTGAGTGGAATAGGAGCAGCATATCACCTTAGGCAACATAACATCAGTGTAGTGTTACATCAACCATTTGTAGGACAAGGAATGTCAGATAACCCAATGAACTCTGTTTATGTCCCATCTCCTTCCCCGGTAGAGGTTTCCCTCATTTCTGTTGTTGGCATTACCAACTTTGGCAGCTACATTGAAGCCGCTAGCGGCGCAACCTTCACAGGTTCTCAAAGAGACTTCGGAATGTTTTCTCCCAAGGTACATTTTAGAATTTGTGTTCGATCTAAATCAATTCTTACAAACTAGTGTGATATGTCTTTCACCTATGAATTACTTTTTAAAGACATGTTACATCTAATGTTTACATCAAAACCAAATAAATATTATGGTATGGCATGACCTAACTAACAAATAACAATATTACAAAATATTTTTCAAACCCGACTCCCCTGCAATTAAAGAATCCGTGCCTGTGAAGCCCCGATACTTCAAAATGGATGACGTACCGTATCCCCTGCGTATCCTGCACCGATACCTGCCCGATACTTCCCGATACGTATCCGGAGAGTATCCAAATATTAAATTTTATTTTTTAAAAAATAATTATCCGATACTTCCCGATACATCCCGATACACACGGATACTTGTGTTTTTTTATATTATTTTGATTTCTGTTTTTTTTTTTTAAAATAAGAATAAAAACATTATATTACTATAATATATATACATTTCATTTATCTTTCTTTGGTGCCAGTACGACCCATACCACACCACACAAACAATTGCATCTTCCCCTTTCTAAAAAATTAGGGTTTCAACTTTTTCTTCCAAAGTGGTCGCCGTCCACTTTGGCCACCGTTGAACTGCTCGGCCATTTTCTTGTCAAGGAAAGAAGATGGATATAAGAAAGGACAATCAAGAATGTGGGACATTAGTAGAGATGCGCATGAACCGCTTGATGATGTTGGAATTAAGTTAGCAGAGATGTCTTTGGATGAACTGGATTTGGAAGCTGATTTGTATCTTGATGATGGGAATGGAGGAGAGGACATGTAAAAGTTAGTTACATGTTAGTGTTAACTCTTAGCACTGATGTGTTCTTTTTTGGATATAGTGCTTCTTTTTTGGATCGATATAATATAGCACTAACAATGTTCCTTTTGGATATAGTGTAGCATTGATGTATAGCACTGATGGTGCTCTTTTTTGTATATATTGCGTATGTAATTGACTAATGACCACTCTCTTAATCGTCAATATTATTTATATTTATGTTAATGTGCTACGAGCCTGGTTTCTTGTGTTTGTTAATATATTTGCATATTAAAAAAATGGTTATAATTATATTGTACATTTAACTATATAATTTTTTTTATTAACGTATCCCAGCCGTATCGTATCTTGATTTTTGAAATTTTTCCGTATCGGCGTATCGGTGCAGTATCGTATCCGTATCGTATCTCGTATCTGGGCTTCACAGATCCGTGCATTCATGCAGTCAGACGGTAGTCGTTTGGTCAAAATTGAATAGTCCATATTCAATCGTGATATTTTTTATTGGTAAAATAAAAATCTATTTTTATGGAGCATCAGATCATGATCATCAGAATATCACCGTTGTCACGAATGTGAGATCCCATAGTCGGCATTCATATATTTCTAAGTGTAAAGATTGATGTAAAAAATTAGTTATTTTTAGTTTGCTCACAAATATTACAAATGCAGATTGGTCAATTTTCAAAGTTGCCACCAAAGCAAAGGACCCCAGAAGCCATAGCAAAAGCAATAGAGAGGATGGAGAGCTTGGACCAAGAAGCTTTCAGGGGTGGATTCATTCTAGAAAAAATCTTGGGGCCAATTTCAACGGGTCATTTGGAGCTCCGAAACACCGATCCAAATGAGAACCCTTTGGTAACATTTAACTACTTCCAAGACCCAAGAGACTTAGAAAGATGCATACAAGGCATGAGCACTATTGAGAAAATTATAGATTCAAATGCTTTTTCTCCATTTAAATACACAAACATGTCAGTTTCTATGCTACTTAACATGACAGCAAATTCACCAGTGAATTTATTGCCTAAACACACAAATACTTCAATGTCTTTGGAACAATTTTGTAGAGACACTGTGATGACTATATGGCATTATCATGGTGGTTGTCAAGTTGGTAGGGTTGTTGATAATGACTATAAGGTTCTTGGTGTCCATGCATTGCGCGTAATCGACGGTTCTACCTTTAATCATTCTCCTGGAACAAATCCTCAAGCCACTGTTATGATGCTTGGAAGGTAAAATATACAGTTAGGATATATGCATATGAATTTCATTTGTGTATGACAGTGTGTGTACATTGTTTAAATTGCTCCTTTATCTTGTGTTTTCAGATATCTTATGGTAGTTGAATTTTTTTATTAATTTGGTGTGCAGGTATATGGGAGTCAAAATATTGAGAGAGAGATTTGCTGCTGATGAAACCACTTAA

Protein sequence

>MS.gene025732.t1

MSALLWRLILLFLAGIVFSPKHCVSLKDTGRKYSFMQDATSAPIISFYDYIIIGGGTAGCPLAATLSQNHRVLVLERGGSPYGNPNITNLSAFGVALSDTSPSSPAQRFISEDGVINSRARVLGGGSCLNAGFYTRASPRYVSEAGWDEKLVKQSYKWVERVVAFWPPMRQWQSAVRDGLLEVGVLPDNGFTYDHIHGTKVGGTIFDQNGQRHTAADLLEYANINTITLLLHATVHRILFTKSKGGLSSKPIAHGVVFKDARGTEHRAYLKQGIRNEIIVSAGALGSPQLLMLSGIGAAYHLRQHNISVVLHQPFVGQGMSDNPMNSVYVPSPSPVEVSLISVVGITNFGSYIEAASGATFTGSQRDFGMFSPKIGQFSKLPPKQRTPEAIAKAIERMESLDQEAFRGGFILEKILGPISTGHLELRNTDPNENPLVTFNYFQDPRDLERCIQGMSTIEKIIDSNAFSPFKYTNMSVSMLLNMTANSPVNLLPKHTNTSMSLEQFCRDTVMTIWHYHGGCQVGRVVDNDYKVLGVHALRVIDGSTFNHSPGTNPQATVMMLGRYMGVKILRERFAADETT