Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026933.t1 | XP_013450821.1 | 96.4 | 248 | 7 | 1 | 1 | 246 | 1 | 248 | 1.00E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026933.t1 | A2YZ24 | 57.8 | 223 | 93 | 1 | 2 | 224 | 1 | 222 | 2.2e-70 | 266.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026933.t1 | A0A072U6A4 | 96.4 | 248 | 7 | 1 | 1 | 246 | 1 | 248 | 7.4e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026933 | MS.gene009329 | PPI |
| MS.gene026933 | MS.gene31850 | PPI |
| MS.gene026933 | MS.gene044269 | PPI |
| MS.gene013686 | MS.gene026933 | PPI |
| MS.gene026933 | MS.gene70529 | PPI |
| MS.gene026933 | MS.gene46188 | PPI |
| MS.gene026933 | MS.gene048962 | PPI |
| MS.gene026933 | MS.gene25769 | PPI |
| MS.gene026933 | MS.gene81949 | PPI |
| MS.gene026933 | MS.gene009331 | PPI |
| MS.gene026933 | MS.gene52346 | PPI |
| MS.gene026933 | MS.gene02646 | PPI |
| MS.gene55828 | MS.gene026933 | PPI |
| MS.gene026933 | MS.gene02493 | PPI |
| MS.gene026933 | MS.gene026679 | PPI |
| MS.gene026933 | MS.gene93151 | PPI |
| MS.gene90281 | MS.gene026933 | PPI |
| MS.gene69746 | MS.gene026933 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026933.t1 | MTR_6g007637 | 96.371 | 248 | 7 | 1 | 1 | 246 | 1 | 248 | 1.45e-175 | 483 |
| MS.gene026933.t1 | MTR_6g007633 | 80.349 | 229 | 41 | 2 | 2 | 227 | 1 | 228 | 2.05e-133 | 375 |
| MS.gene026933.t1 | MTR_6g007623 | 75.342 | 219 | 53 | 1 | 9 | 227 | 5 | 222 | 1.80e-120 | 343 |
| MS.gene026933.t1 | MTR_6g007610 | 57.021 | 235 | 85 | 3 | 2 | 225 | 1 | 230 | 1.29e-85 | 254 |
| MS.gene026933.t1 | MTR_8g099730 | 51.415 | 212 | 102 | 1 | 5 | 216 | 14 | 224 | 6.90e-77 | 233 |
| MS.gene026933.t1 | MTR_3g080990 | 50.427 | 234 | 109 | 2 | 4 | 231 | 3 | 235 | 2.90e-75 | 229 |
| MS.gene026933.t1 | MTR_4g106990 | 55.051 | 198 | 87 | 2 | 29 | 226 | 35 | 230 | 2.71e-70 | 216 |
| MS.gene026933.t1 | MTR_8g099730 | 48.428 | 159 | 81 | 1 | 58 | 216 | 3 | 160 | 9.05e-52 | 167 |
| MS.gene026933.t1 | MTR_3g089125 | 40.889 | 225 | 129 | 4 | 6 | 229 | 2 | 223 | 6.23e-49 | 161 |
| MS.gene026933.t1 | MTR_1g029380 | 39.669 | 242 | 137 | 3 | 7 | 241 | 3 | 242 | 8.81e-49 | 161 |
| MS.gene026933.t1 | MTR_2g073190 | 40.529 | 227 | 131 | 3 | 6 | 231 | 11 | 234 | 5.25e-47 | 165 |
| MS.gene026933.t1 | MTR_8g042490 | 37.500 | 224 | 134 | 4 | 5 | 227 | 10 | 228 | 7.38e-47 | 155 |
| MS.gene026933.t1 | MTR_2g436310 | 42.922 | 219 | 120 | 4 | 12 | 229 | 8 | 222 | 9.66e-46 | 153 |
| MS.gene026933.t1 | MTR_8g096320 | 39.815 | 216 | 126 | 3 | 1 | 215 | 1 | 213 | 2.77e-44 | 150 |
| MS.gene026933.t1 | MTR_5g067530 | 39.286 | 224 | 124 | 6 | 11 | 232 | 12 | 225 | 4.10e-44 | 149 |
| MS.gene026933.t1 | MTR_1g028460 | 38.428 | 229 | 136 | 3 | 5 | 230 | 2 | 228 | 3.80e-42 | 144 |
| MS.gene026933.t1 | MTR_5g092600 | 38.117 | 223 | 132 | 5 | 13 | 234 | 14 | 231 | 2.03e-41 | 142 |
| MS.gene026933.t1 | MTR_3g098910 | 38.028 | 213 | 128 | 3 | 13 | 224 | 13 | 222 | 2.52e-40 | 141 |
| MS.gene026933.t1 | MTR_7g007490 | 36.530 | 219 | 136 | 2 | 11 | 229 | 12 | 227 | 4.67e-40 | 139 |
| MS.gene026933.t1 | MTR_7g405710 | 41.395 | 215 | 115 | 6 | 13 | 224 | 13 | 219 | 1.90e-38 | 135 |
| MS.gene026933.t1 | MTR_3g090940 | 35.556 | 225 | 139 | 4 | 9 | 229 | 6 | 228 | 3.26e-38 | 134 |
| MS.gene026933.t1 | MTR_8g096310 | 34.404 | 218 | 135 | 4 | 11 | 225 | 11 | 223 | 3.94e-37 | 132 |
| MS.gene026933.t1 | MTR_3g090950 | 36.444 | 225 | 137 | 4 | 9 | 229 | 6 | 228 | 4.11e-37 | 131 |
| MS.gene026933.t1 | MTR_2g007890 | 33.645 | 214 | 136 | 4 | 13 | 225 | 16 | 224 | 4.83e-37 | 132 |
| MS.gene026933.t1 | MTR_3g098930 | 41.573 | 178 | 100 | 3 | 11 | 187 | 12 | 186 | 2.19e-34 | 122 |
| MS.gene026933.t1 | MTR_7g405730 | 38.863 | 211 | 118 | 6 | 13 | 220 | 13 | 215 | 2.99e-34 | 124 |
| MS.gene026933.t1 | MTR_8g096320 | 37.736 | 159 | 95 | 3 | 58 | 215 | 3 | 158 | 5.69e-26 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026933.t1 | AT5G62850 | 55.804 | 224 | 98 | 1 | 8 | 231 | 7 | 229 | 8.21e-92 | 270 |
| MS.gene026933.t1 | AT5G62850 | 57.513 | 193 | 81 | 1 | 8 | 200 | 7 | 198 | 2.23e-78 | 235 |
| MS.gene026933.t1 | AT4G10850 | 50.877 | 228 | 108 | 3 | 6 | 232 | 7 | 231 | 1.35e-77 | 235 |
| MS.gene026933.t1 | AT3G28007 | 56.744 | 215 | 92 | 1 | 2 | 216 | 1 | 214 | 1.88e-75 | 229 |
| MS.gene026933.t1 | AT5G40260 | 49.180 | 244 | 116 | 3 | 2 | 243 | 1 | 238 | 1.29e-73 | 224 |
| MS.gene026933.t1 | AT1G66770 | 45.982 | 224 | 118 | 3 | 6 | 227 | 7 | 229 | 7.54e-68 | 210 |
| MS.gene026933.t1 | AT5G40260 | 52.239 | 201 | 94 | 1 | 2 | 200 | 1 | 201 | 2.67e-66 | 204 |
| MS.gene026933.t1 | AT1G21460 | 41.736 | 242 | 134 | 3 | 7 | 243 | 3 | 242 | 3.21e-54 | 175 |
| MS.gene026933.t1 | AT4G15920 | 40.693 | 231 | 133 | 3 | 12 | 241 | 8 | 235 | 2.04e-52 | 170 |
| MS.gene026933.t1 | AT3G16690 | 39.381 | 226 | 126 | 6 | 12 | 232 | 8 | 227 | 4.22e-47 | 156 |
| MS.gene026933.t1 | AT3G16690 | 39.381 | 226 | 126 | 6 | 12 | 232 | 43 | 262 | 5.98e-47 | 157 |
| MS.gene026933.t1 | AT5G13170 | 35.443 | 237 | 141 | 5 | 11 | 238 | 13 | 246 | 7.43e-45 | 152 |
| MS.gene026933.t1 | AT3G14770 | 36.486 | 222 | 138 | 3 | 6 | 227 | 11 | 229 | 8.95e-44 | 148 |
| MS.gene026933.t1 | AT1G21460 | 44.560 | 193 | 103 | 4 | 6 | 197 | 2 | 191 | 1.47e-43 | 146 |
| MS.gene026933.t1 | AT5G23660 | 40.435 | 230 | 131 | 5 | 11 | 239 | 13 | 237 | 2.37e-42 | 145 |
| MS.gene026933.t1 | AT3G48740 | 37.826 | 230 | 137 | 5 | 11 | 239 | 13 | 237 | 2.70e-40 | 140 |
| MS.gene026933.t1 | AT2G39060 | 37.559 | 213 | 127 | 3 | 13 | 225 | 13 | 219 | 6.53e-40 | 139 |
| MS.gene026933.t1 | AT4G25010 | 38.889 | 216 | 128 | 4 | 1 | 215 | 1 | 213 | 1.42e-39 | 138 |
| MS.gene026933.t1 | AT5G50800 | 38.967 | 213 | 126 | 4 | 1 | 212 | 1 | 210 | 1.33e-38 | 136 |
| MS.gene026933.t1 | AT5G50790 | 32.068 | 237 | 149 | 5 | 1 | 236 | 1 | 226 | 2.31e-37 | 133 |
| MS.gene026933.t1 | AT5G53190 | 37.089 | 213 | 131 | 3 | 9 | 219 | 6 | 217 | 4.55e-37 | 131 |
| MS.gene026933.t1 | AT3G16690 | 32.642 | 193 | 121 | 4 | 12 | 203 | 8 | 192 | 2.99e-24 | 96.3 |
Find 48 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGTTGAATTGTGCATTT+TGG | 0.161861 | 6.3:-3279656 | MS.gene026933:CDS |
| AACAACGTTACGAGCTAATT+TGG | 0.207761 | 6.3:+3282413 | None:intergenic |
| TATTGCAGTCCAACTTTCTA+TGG | 0.237151 | 6.3:-3279732 | MS.gene026933:intron |
| TTCAACAATGTTGCTAAGTA+TGG | 0.264358 | 6.3:+3279669 | None:intergenic |
| GTGTGAAATACATGCCATTT+TGG | 0.268851 | 6.3:-3278642 | MS.gene026933:CDS |
| TACACTTACCCGTCCACTTT+TGG | 0.294861 | 6.3:+3279521 | None:intergenic |
| GCAGGCAATGTCATCTCTTT+CGG | 0.309432 | 6.3:-3282233 | MS.gene026933:intron |
| CGTAACGTTGTTGGTGTCAT+AGG | 0.335338 | 6.3:-3282402 | MS.gene026933:intron |
| TGCTGTAGCTCTTCCATTTG+AGG | 0.361218 | 6.3:+3278116 | None:intergenic |
| CCCATTGGATATTTATGTCT+TGG | 0.373053 | 6.3:-3278563 | MS.gene026933:intron |
| TTTATAATTCCATAGAAAGT+TGG | 0.392063 | 6.3:+3279723 | None:intergenic |
| ATAACAATGTTGGCACTTCA+TGG | 0.396737 | 6.3:-3278869 | MS.gene026933:CDS |
| GAGAGAACTAGAGTGCTGTT+TGG | 0.402304 | 6.3:+3279606 | None:intergenic |
| TTCATCTATGCCACCAAAAG+TGG | 0.402476 | 6.3:-3279534 | MS.gene026933:CDS |
| AGAGAACTAGAGTGCTGTTT+GGG | 0.404951 | 6.3:+3279607 | None:intergenic |
| AATGGTATAGGAGTGGTTTC+TGG | 0.406967 | 6.3:-3278240 | MS.gene026933:CDS |
| AAATTAGCTCGTAACGTTGT+TGG | 0.417957 | 6.3:-3282411 | MS.gene026933:CDS |
| AGATTTACCATGATTGTAAG+AGG | 0.418167 | 6.3:+3278779 | None:intergenic |
| GTGCTGTTTGGGTGCACAAA+AGG | 0.430396 | 6.3:+3279618 | None:intergenic |
| TGGCATGTATTTCACACTCT+TGG | 0.431195 | 6.3:+3278648 | None:intergenic |
| TAGTGTTGGAGTTCTCTTTG+AGG | 0.434333 | 6.3:-3279577 | MS.gene026933:CDS |
| AATGTTGCTAAGTATGGATC+TGG | 0.448585 | 6.3:+3279675 | None:intergenic |
| CTATGGAATTATAAAGAAGA+AGG | 0.456171 | 6.3:-3279715 | MS.gene026933:CDS |
| TTGGTTAGAGAGAGCCAAAA+TGG | 0.471710 | 6.3:+3278628 | None:intergenic |
| TGCATCTCCTCTTACAATCA+TGG | 0.478610 | 6.3:-3278786 | MS.gene026933:intron |
| TCTCTAACCAACTTCCTCAA+TGG | 0.479863 | 6.3:-3278616 | MS.gene026933:CDS |
| TTGTAGGTAAGCAATGGTAT+AGG | 0.485041 | 6.3:-3278252 | MS.gene026933:intron |
| GTTCGTGAGATCTCCTCAAA+TGG | 0.489888 | 6.3:-3278129 | MS.gene026933:CDS |
| ACTTCCTCAATGGTTTGTGC+TGG | 0.494981 | 6.3:-3278606 | MS.gene026933:CDS |
| GTTGCTTTATCTTCTCATTG+AGG | 0.505564 | 6.3:-3278918 | MS.gene026933:CDS |
| GCACAAACCATTGAGGAAGT+TGG | 0.509786 | 6.3:+3278609 | None:intergenic |
| CCAAGACATAAATATCCAAT+GGG | 0.522676 | 6.3:+3278563 | None:intergenic |
| CATTGTTCTAATAACAATGT+TGG | 0.525508 | 6.3:-3278879 | MS.gene026933:CDS |
| ACCAAGACATAAATATCCAA+TGG | 0.531120 | 6.3:+3278562 | None:intergenic |
| ATATGCTCTCATCCACCCAT+TGG | 0.548993 | 6.3:-3278578 | MS.gene026933:CDS |
| GTTCTCTCTATCAATAGTGT+TGG | 0.558531 | 6.3:-3279591 | MS.gene026933:CDS |
| AATTATAAAGAAGAAGGCTG+TGG | 0.576708 | 6.3:-3279709 | MS.gene026933:CDS |
| CAACATTGTTATTAGAACAA+TGG | 0.588246 | 6.3:+3278880 | None:intergenic |
| CTATGCCACCAAAAGTGGAC+GGG | 0.592462 | 6.3:-3279529 | MS.gene026933:intron |
| GCTTGCTATTTCTCTCGCAA+AGG | 0.597169 | 6.3:-3278195 | MS.gene026933:CDS |
| GAGATCTCACGAACTCCAGT+TGG | 0.600401 | 6.3:+3278138 | None:intergenic |
| ATATTCTTGTAGGTAAGCAA+TGG | 0.607146 | 6.3:-3278258 | MS.gene026933:intron |
| TTGTCCAGCACAAACCATTG+AGG | 0.622221 | 6.3:+3278602 | None:intergenic |
| AGACATAAATATCCAATGGG+TGG | 0.624220 | 6.3:+3278566 | None:intergenic |
| TCTATGCCACCAAAAGTGGA+CGG | 0.627429 | 6.3:-3279530 | MS.gene026933:CDS |
| AAAGGTGAAAACGATGATGA+TGG | 0.634633 | 6.3:-3278177 | MS.gene026933:CDS |
| GGTAAGCAATGGTATAGGAG+TGG | 0.640630 | 6.3:-3278247 | MS.gene026933:CDS |
| CATTGTTATTAGAACAATGG+CGG | 0.640689 | 6.3:+3278883 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATTATTTATTTAAGT+AGG | + | chr6.3:3282245-3282264 | None:intergenic | 10.0% |
| !! | ATAAGAAATAAAAAAAAACA+TGG | + | chr6.3:3278184-3278203 | None:intergenic | 10.0% |
| !! | TTTGTTTAATTCAAATTTAT+TGG | + | chr6.3:3280660-3280679 | None:intergenic | 10.0% |
| !!! | ATAATTGTTTTAATAACTTT+AGG | + | chr6.3:3280281-3280300 | None:intergenic | 10.0% |
| !!! | TAAATTATTTTTTATTTACC+TGG | + | chr6.3:3279700-3279719 | None:intergenic | 10.0% |
| !! | CTTGAAAATAAAAATGAAAT+GGG | + | chr6.3:3278415-3278434 | None:intergenic | 15.0% |
| !! | GAGATATATGTAATTAAAAT+AGG | + | chr6.3:3281835-3281854 | None:intergenic | 15.0% |
| !! | GTTTAATAGATATAATCTAA+TGG | + | chr6.3:3278736-3278755 | None:intergenic | 15.0% |
| !! | TAGAAAATTGAATTATCAAT+GGG | - | chr6.3:3282063-3282082 | MS.gene026933:intron | 15.0% |
| !! | TAGTAGTATATGAAATAAAA+GGG | + | chr6.3:3282045-3282064 | None:intergenic | 15.0% |
| !! | TATACAAATTTAAATGATCA+TGG | + | chr6.3:3281795-3281814 | None:intergenic | 15.0% |
| !! | TATTTGCTTGTAAAAAAAAT+TGG | - | chr6.3:3280555-3280574 | MS.gene026933:intron | 15.0% |
| !! | TCTTGAAAATAAAAATGAAA+TGG | + | chr6.3:3278416-3278435 | None:intergenic | 15.0% |
| !! | TTTAATATCATTACTCAAAA+TGG | + | chr6.3:3281289-3281308 | None:intergenic | 15.0% |
| !!! | AATATGTTGAATTTTTTTGA+AGG | + | chr6.3:3279482-3279501 | None:intergenic | 15.0% |
| !!! | ATACCTAAATAATTTTGATT+TGG | + | chr6.3:3281155-3281174 | None:intergenic | 15.0% |
| !!! | ATAGATAAAGTACTTTTTTT+AGG | + | chr6.3:3280468-3280487 | None:intergenic | 15.0% |
| !!! | ATTAACGTTTTTTATTTGAT+TGG | - | chr6.3:3279193-3279212 | MS.gene026933:intron | 15.0% |
| !!! | TAAAAAAAATTGGTAATAGA+TGG | - | chr6.3:3280565-3280584 | MS.gene026933:intron | 15.0% |
| !!! | TAAGCAAAAATTTACTTTTT+AGG | + | chr6.3:3279986-3280005 | None:intergenic | 15.0% |
| !!! | TAAGTAAAAATTCACTTTTT+AGG | - | chr6.3:3279897-3279916 | MS.gene026933:intron | 15.0% |
| !!! | TACCTAAATAATTTTGATTT+GGG | + | chr6.3:3281154-3281173 | None:intergenic | 15.0% |
| !!! | TCAATTTAAAGTCAAAATTT+TGG | - | chr6.3:3281372-3281391 | MS.gene026933:intron | 15.0% |
| !!! | TCTATTTGTTAATCTTAAAA+TGG | + | chr6.3:3279124-3279143 | None:intergenic | 15.0% |
| !!! | TTTAAAATTAGATATTTGGA+TGG | + | chr6.3:3279399-3279418 | None:intergenic | 15.0% |
| !! | AAAAAAAGATCGTTAATTGT+TGG | - | chr6.3:3281697-3281716 | MS.gene026933:intron | 20.0% |
| !! | ATAAAGTGCATTATAAATCA+CGG | + | chr6.3:3280437-3280456 | None:intergenic | 20.0% |
| !! | ATGAAACATATTTCATCAAT+AGG | - | chr6.3:3278435-3278454 | MS.gene026933:intron | 20.0% |
| !! | ATTAACAAATAGAAAATCAG+CGG | - | chr6.3:3279131-3279150 | MS.gene026933:intron | 20.0% |
| !! | CTAACATTTAATAATTGAAC+TGG | - | chr6.3:3279667-3279686 | MS.gene026933:CDS | 20.0% |
| !! | CTAGAAAATTGAATTATCAA+TGG | - | chr6.3:3282062-3282081 | MS.gene026933:intron | 20.0% |
| !! | CTAGTAGTATATGAAATAAA+AGG | + | chr6.3:3282046-3282065 | None:intergenic | 20.0% |
| !! | GTTAATCATGTTTAAAAATG+TGG | - | chr6.3:3281323-3281342 | MS.gene026933:intron | 20.0% |
| !! | TAAGTTGTTGTGATTAATTT+CGG | - | chr6.3:3278617-3278636 | MS.gene026933:CDS | 20.0% |
| !! | TCAAAAAGGATTATTACTAT+TGG | - | chr6.3:3279776-3279795 | MS.gene026933:intron | 20.0% |
| !! | TTCATAGTCATATGATTAAA+TGG | - | chr6.3:3281091-3281110 | MS.gene026933:intron | 20.0% |
| !! | TTTATAATTCCATAGAAAGT+TGG | + | chr6.3:3280819-3280838 | None:intergenic | 20.0% |
| !!! | AAATAAAAATGAAATGGGTT+TGG | + | chr6.3:3278410-3278429 | None:intergenic | 20.0% |
| !!! | AACAAAAGTGGATTAAATTT+TGG | - | chr6.3:3279546-3279565 | MS.gene026933:CDS | 20.0% |
| !!! | AACGATTAGTTACATAATAT+AGG | + | chr6.3:3281572-3281591 | None:intergenic | 20.0% |
| !!! | AAGATCGTATATTTTGAAAT+TGG | - | chr6.3:3280342-3280361 | MS.gene026933:intron | 20.0% |
| !!! | AATCTTTTTATTGTGAACTT+AGG | - | chr6.3:3280378-3280397 | MS.gene026933:intron | 20.0% |
| !!! | ACAAATCTATATGACATTTT+TGG | + | chr6.3:3282214-3282233 | None:intergenic | 20.0% |
| !!! | ACCTAAATAATTTTGATTTG+GGG | + | chr6.3:3281153-3281172 | None:intergenic | 20.0% |
| !!! | ACTTATTCTAAAGTTTTTTG+AGG | - | chr6.3:3280244-3280263 | MS.gene026933:intron | 20.0% |
| !!! | ATTAAATGGATTGAAAGTAT+AGG | - | chr6.3:3281105-3281124 | MS.gene026933:intron | 20.0% |
| !!! | ATTTGTTAATCTTAAAATGG+TGG | + | chr6.3:3279121-3279140 | None:intergenic | 20.0% |
| !!! | GATTATTTTGACTTTTTGAA+TGG | + | chr6.3:3279372-3279391 | None:intergenic | 20.0% |
| !!! | GTTTTTGTTTTCAGTTATTT+TGG | - | chr6.3:3278807-3278826 | MS.gene026933:CDS | 20.0% |
| !!! | TATAGGGTCAATTTTTATTT+GGG | - | chr6.3:3281122-3281141 | MS.gene026933:intron | 20.0% |
| !!! | TGGTTTACTATAGATTTTAA+TGG | - | chr6.3:3278831-3278850 | MS.gene026933:CDS | 20.0% |
| !!! | TTAAATGGATTGAAAGTATA+GGG | - | chr6.3:3281106-3281125 | MS.gene026933:intron | 20.0% |
| !!! | TTTTTACTTATATTTGTGAC+CGG | + | chr6.3:3279887-3279906 | None:intergenic | 20.0% |
| ! | AAAAGGATTATTACTATTGG+AGG | - | chr6.3:3279779-3279798 | MS.gene026933:intron | 25.0% |
| ! | AAAGGATTATTACTATTGGA+GGG | - | chr6.3:3279780-3279799 | MS.gene026933:intron | 25.0% |
| ! | AAATAATAAAATACACCCTC+CGG | + | chr6.3:3280018-3280037 | None:intergenic | 25.0% |
| ! | AAATCATTGTCAATCATATG+TGG | + | chr6.3:3281407-3281426 | None:intergenic | 25.0% |
| ! | AAATGTCATATAGATTTGTC+AGG | - | chr6.3:3282215-3282234 | MS.gene026933:CDS | 25.0% |
| ! | AACATATTTCATCAATAGGT+CGG | - | chr6.3:3278439-3278458 | MS.gene026933:intron | 25.0% |
| ! | ACCCCAAATCAAAATTATTT+AGG | - | chr6.3:3281149-3281168 | MS.gene026933:intron | 25.0% |
| ! | AGTCTACATACATCATTTAT+TGG | + | chr6.3:3279928-3279947 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr6.3:3279961-3279980 | None:intergenic | 25.0% |
| ! | CATTGTTCTAATAACAATGT+TGG | - | chr6.3:3281660-3281679 | MS.gene026933:intron | 25.0% |
| ! | CTATGGAATTATAAAGAAGA+AGG | - | chr6.3:3280824-3280843 | MS.gene026933:intron | 25.0% |
| ! | GATGGATGTGATATATTTAT+TGG | - | chr6.3:3280583-3280602 | MS.gene026933:intron | 25.0% |
| ! | TAAAGTGCATTATAAATCAC+GGG | + | chr6.3:3280436-3280455 | None:intergenic | 25.0% |
| ! | TAGGAACACAAAAATGTTTA+TGG | + | chr6.3:3281553-3281572 | None:intergenic | 25.0% |
| ! | TAGGTAAATGAATGAATGAA+TGG | - | chr6.3:3280771-3280790 | MS.gene026933:intron | 25.0% |
| ! | TATGATTGTTTATCACTTCT+AGG | - | chr6.3:3280752-3280771 | MS.gene026933:intron | 25.0% |
| ! | TCTTGATGTATATAATGAAC+AGG | - | chr6.3:3281853-3281872 | MS.gene026933:intron | 25.0% |
| ! | TTCATTTAACTAAACATGTC+AGG | - | chr6.3:3282179-3282198 | MS.gene026933:intron | 25.0% |
| ! | TTTGTGCATTATATTCTTGT+AGG | - | chr6.3:3282271-3282290 | MS.gene026933:intron | 25.0% |
| !! | AATAGTGTTTAACTTCTACA+TGG | - | chr6.3:3278692-3278711 | MS.gene026933:intron | 25.0% |
| !! | ACTTATATTTGAGATCGAAA+GGG | - | chr6.3:3279602-3279621 | MS.gene026933:CDS | 25.0% |
| !! | ATCAGTCAACAAAATACTTT+TGG | - | chr6.3:3279821-3279840 | MS.gene026933:intron | 25.0% |
| !! | ATTGTTGAATTGTGCATTTT+GGG | - | chr6.3:3280884-3280903 | MS.gene026933:intron | 25.0% |
| !! | ATTTTACAGTTTACTAGCTA+CGG | - | chr6.3:3279499-3279518 | MS.gene026933:intron | 25.0% |
| !! | CAACATTGTTATTAGAACAA+TGG | + | chr6.3:3281662-3281681 | None:intergenic | 25.0% |
| !! | GTATAGGGTCAATTTTTATT+TGG | - | chr6.3:3281121-3281140 | MS.gene026933:intron | 25.0% |
| !! | GTGCTCTATAATTTTCAAAA+AGG | - | chr6.3:3279762-3279781 | MS.gene026933:intron | 25.0% |
| !! | TACTTATATTTGAGATCGAA+AGG | - | chr6.3:3279601-3279620 | MS.gene026933:CDS | 25.0% |
| !! | TTTTTGCTTATATTTGTGAC+CGG | - | chr6.3:3279996-3280015 | MS.gene026933:intron | 25.0% |
| !!! | AATCTATATGACATTTTTGG+TGG | + | chr6.3:3282211-3282230 | None:intergenic | 25.0% |
| !!! | AGTACTTTTTTTAGGAGAAA+TGG | + | chr6.3:3280460-3280479 | None:intergenic | 25.0% |
| !!! | ATCTTAAAATGGTGGAATTT+TGG | + | chr6.3:3279113-3279132 | None:intergenic | 25.0% |
| !!! | ATTTTTTATTTACCTGGTCA+AGG | + | chr6.3:3279694-3279713 | None:intergenic | 25.0% |
| !!! | GCATATTTTTTGAAGTATTC+TGG | - | chr6.3:3278878-3278897 | MS.gene026933:CDS | 25.0% |
| !!! | TATTTTTTGAAGTATTCTGG+TGG | - | chr6.3:3278881-3278900 | MS.gene026933:CDS | 25.0% |
| !!! | TTGTTTTCAGTTATTTTGGA+TGG | - | chr6.3:3278811-3278830 | MS.gene026933:CDS | 25.0% |
| AATCAATGATGTAACTAGAG+GGG | + | chr6.3:3281052-3281071 | None:intergenic | 30.0% | |
| AATTATAAAGAAGAAGGCTG+TGG | - | chr6.3:3280830-3280849 | MS.gene026933:intron | 30.0% | |
| ACAATGTTTGAATTATGACC+AGG | - | chr6.3:3279728-3279747 | MS.gene026933:intron | 30.0% | |
| ACCAAGACATAAATATCCAA+TGG | + | chr6.3:3281980-3281999 | None:intergenic | 30.0% | |
| AGACATTGCATGTAATATGT+TGG | + | chr6.3:3278965-3278984 | None:intergenic | 30.0% | |
| AGATTTACCATGATTGTAAG+AGG | + | chr6.3:3281763-3281782 | None:intergenic | 30.0% | |
| ATATTCTTGTAGGTAAGCAA+TGG | - | chr6.3:3282281-3282300 | MS.gene026933:intron | 30.0% | |
| ATCAAATGCAAGCAAATATG+TGG | + | chr6.3:3280221-3280240 | None:intergenic | 30.0% | |
| ATGATTAACTAGTAGTCAAG+TGG | + | chr6.3:3281312-3281331 | None:intergenic | 30.0% | |
| ATTACTATTGGAGGGAATTT+AGG | - | chr6.3:3279788-3279807 | MS.gene026933:intron | 30.0% | |
| CAATCAATGATGTAACTAGA+GGG | + | chr6.3:3281053-3281072 | None:intergenic | 30.0% | |
| CACTAAAAGTTCTTAGCTTA+GGG | + | chr6.3:3280726-3280745 | None:intergenic | 30.0% | |
| CCAAGACATAAATATCCAAT+GGG | + | chr6.3:3281979-3281998 | None:intergenic | 30.0% | |
| GTTAATCACATGCAAAATTG+TGG | + | chr6.3:3281499-3281518 | None:intergenic | 30.0% | |
| TCAATCAATGATGTAACTAG+AGG | + | chr6.3:3281054-3281073 | None:intergenic | 30.0% | |
| TCAATCGAAAATGTCTGAAT+CGG | - | chr6.3:3278651-3278670 | MS.gene026933:CDS | 30.0% | |
| TGTATATAATGAACAGGCAA+AGG | - | chr6.3:3281859-3281878 | MS.gene026933:intron | 30.0% | |
| TGTGATTAACCATGTATCTT+AGG | - | chr6.3:3281509-3281528 | MS.gene026933:intron | 30.0% | |
| TTCAACAATGTTGCTAAGTA+TGG | + | chr6.3:3280873-3280892 | None:intergenic | 30.0% | |
| ! | AGTCAACAAAATACTTTTGG+AGG | - | chr6.3:3279824-3279843 | MS.gene026933:intron | 30.0% |
| ! | CATTGTTATTAGAACAATGG+CGG | + | chr6.3:3281659-3281678 | None:intergenic | 30.0% |
| ! | CATTGTTGAATTGTGCATTT+TGG | - | chr6.3:3280883-3280902 | MS.gene026933:intron | 30.0% |
| ! | GCAAATTGATTCAACAAAAG+TGG | - | chr6.3:3279534-3279553 | MS.gene026933:CDS | 30.0% |
| ! | TAGATAAAAGAGTTTTACGC+TGG | + | chr6.3:3278345-3278364 | None:intergenic | 30.0% |
| ! | TCAAGTGATATTTTGTCACT+CGG | - | chr6.3:3278564-3278583 | MS.gene026933:CDS | 30.0% |
| ! | TTTTCTACACCTAAGATACA+TGG | + | chr6.3:3281521-3281540 | None:intergenic | 30.0% |
| !! | TTATTTGTTCTTGTTGTTGC+AGG | - | chr6.3:3278288-3278307 | MS.gene026933:intron | 30.0% |
| !!! | ACAATGTGTGTGTGTTTTTT+AGG | + | chr6.3:3279638-3279657 | None:intergenic | 30.0% |
| !!! | GTCATTTTATTTTGCACTTC+TGG | + | chr6.3:3279263-3279282 | None:intergenic | 30.0% |
| AAAGGTGAAAACGATGATGA+TGG | - | chr6.3:3282362-3282381 | MS.gene026933:intron | 35.0% | |
| AAATTAGCTCGTAACGTTGT+TGG | - | chr6.3:3278128-3278147 | MS.gene026933:CDS | 35.0% | |
| AACAACGTTACGAGCTAATT+TGG | + | chr6.3:3278129-3278148 | None:intergenic | 35.0% | |
| AATGTTGCTAAGTATGGATC+TGG | + | chr6.3:3280867-3280886 | None:intergenic | 35.0% | |
| AGACATAAATATCCAATGGG+TGG | + | chr6.3:3281976-3281995 | None:intergenic | 35.0% | |
| ATAACAATGTTGGCACTTCA+TGG | - | chr6.3:3281670-3281689 | MS.gene026933:intron | 35.0% | |
| ATCAATGATGTAACTAGAGG+GGG | + | chr6.3:3281051-3281070 | None:intergenic | 35.0% | |
| ATTCACACTATAGACACACA+TGG | + | chr6.3:3280511-3280530 | None:intergenic | 35.0% | |
| ATTGGACTGTAATTGATGCA+TGG | - | chr6.3:3280601-3280620 | MS.gene026933:intron | 35.0% | |
| CCACTAAAAGTTCTTAGCTT+AGG | + | chr6.3:3280727-3280746 | None:intergenic | 35.0% | |
| CCCATTGGATATTTATGTCT+TGG | - | chr6.3:3281976-3281995 | MS.gene026933:intron | 35.0% | |
| GAACTTAGGAATGTACTAGT+AGG | - | chr6.3:3280392-3280411 | MS.gene026933:intron | 35.0% | |
| GTCATATAGATTTGTCAGGT+CGG | - | chr6.3:3282219-3282238 | MS.gene026933:CDS | 35.0% | |
| GTTCTCTCTATCAATAGTGT+TGG | - | chr6.3:3280948-3280967 | MS.gene026933:intron | 35.0% | |
| TACTTATATTTGTGACCGGA+GGG | + | chr6.3:3279883-3279902 | None:intergenic | 35.0% | |
| TATTGCAGTCCAACTTTCTA+TGG | - | chr6.3:3280807-3280826 | MS.gene026933:intron | 35.0% | |
| TTACTTATATTTGTGACCGG+AGG | + | chr6.3:3279884-3279903 | None:intergenic | 35.0% | |
| TTGTAGGTAAGCAATGGTAT+AGG | - | chr6.3:3282287-3282306 | MS.gene026933:intron | 35.0% | |
| ! | AGGCTCGACATTTTTGATAT+AGG | - | chr6.3:3278491-3278510 | MS.gene026933:intron | 35.0% |
| ! | ATGAAATGGGTTTGGATGAT+TGG | + | chr6.3:3278402-3278421 | None:intergenic | 35.0% |
| ! | CCTAAGCTAAGAACTTTTAG+TGG | - | chr6.3:3280724-3280743 | MS.gene026933:intron | 35.0% |
| ! | GTTGCTTTATCTTCTCATTG+AGG | - | chr6.3:3281621-3281640 | MS.gene026933:intron | 35.0% |
| ! | TGATATTTTGTCACTCGGTT+AGG | - | chr6.3:3278569-3278588 | MS.gene026933:CDS | 35.0% |
| !! | GTGTGAAATACATGCCATTT+TGG | - | chr6.3:3281897-3281916 | MS.gene026933:intron | 35.0% |
| !! | TGTGCATTTTGGGTGTTTTA+TGG | - | chr6.3:3280894-3280913 | MS.gene026933:intron | 35.0% |
| !!! | GATTTTGAGTTGAAACCAAC+TGG | - | chr6.3:3282386-3282405 | MS.gene026933:intron | 35.0% |
| !!! | TTCGATTTTAGCTAAGTCAC+AGG | + | chr6.3:3282119-3282138 | None:intergenic | 35.0% |
| AAAAATACGTGTACACCCTC+CGG | - | chr6.3:3279865-3279884 | MS.gene026933:intron | 40.0% | |
| AATGGTATAGGAGTGGTTTC+TGG | - | chr6.3:3282299-3282318 | MS.gene026933:intron | 40.0% | |
| ACAACATCGTCAGTTGAACT+AGG | + | chr6.3:3278470-3278489 | None:intergenic | 40.0% | |
| AGAGCACATATTATCTCTCC+TGG | + | chr6.3:3279749-3279768 | None:intergenic | 40.0% | |
| GACTGTAATTGATGCATGGT+TGG | - | chr6.3:3280605-3280624 | MS.gene026933:intron | 40.0% | |
| GGTGGCATAGATGAAAAAGA+TGG | + | chr6.3:3281000-3281019 | None:intergenic | 40.0% | |
| GTTCAACTGACGATGTTGTT+AGG | - | chr6.3:3278471-3278490 | MS.gene026933:intron | 40.0% | |
| TCAATGATGTAACTAGAGGG+GGG | + | chr6.3:3281050-3281069 | None:intergenic | 40.0% | |
| TCTCTAACCAACTTCCTCAA+TGG | - | chr6.3:3281923-3281942 | MS.gene026933:intron | 40.0% | |
| TGCATCTCCTCTTACAATCA+TGG | - | chr6.3:3281753-3281772 | MS.gene026933:intron | 40.0% | |
| TGCTTATATTTGTGACCGGA+GGG | - | chr6.3:3280000-3280019 | MS.gene026933:intron | 40.0% | |
| TGGCATGTATTTCACACTCT+TGG | + | chr6.3:3281894-3281913 | None:intergenic | 40.0% | |
| TTCATCTATGCCACCAAAAG+TGG | - | chr6.3:3281005-3281024 | MS.gene026933:intron | 40.0% | |
| TTGCTTATATTTGTGACCGG+AGG | - | chr6.3:3279999-3280018 | MS.gene026933:intron | 40.0% | |
| TTGGTTAGAGAGAGCCAAAA+TGG | + | chr6.3:3281914-3281933 | None:intergenic | 40.0% | |
| ! | TAGTGTTGGAGTTCTCTTTG+AGG | - | chr6.3:3280962-3280981 | MS.gene026933:intron | 40.0% |
| !! | AGAGAACTAGAGTGCTGTTT+GGG | + | chr6.3:3280935-3280954 | None:intergenic | 40.0% |
| AATGTCCTGCCAAGCTATGA+GGG | - | chr6.3:3279167-3279186 | MS.gene026933:intron | 45.0% | |
| AATTGAACTGGTCCTTGACC+AGG | - | chr6.3:3279679-3279698 | MS.gene026933:CDS | 45.0% | |
| ATATGCTCTCATCCACCCAT+TGG | - | chr6.3:3281961-3281980 | MS.gene026933:intron | 45.0% | |
| GCACAAACCATTGAGGAAGT+TGG | + | chr6.3:3281933-3281952 | None:intergenic | 45.0% | |
| GCAGGCAATGTCATCTCTTT+CGG | - | chr6.3:3278306-3278325 | MS.gene026933:intron | 45.0% | |
| GGTAAGCAATGGTATAGGAG+TGG | - | chr6.3:3282292-3282311 | MS.gene026933:intron | 45.0% | |
| GTTAATGAGCCCTCATAGCT+TGG | + | chr6.3:3279179-3279198 | None:intergenic | 45.0% | |
| GTTCGTGAGATCTCCTCAAA+TGG | - | chr6.3:3282410-3282429 | MS.gene026933:CDS | 45.0% | |
| TCTATGCCACCAAAAGTGGA+CGG | - | chr6.3:3281009-3281028 | MS.gene026933:intron | 45.0% | |
| TGCTGTAGCTCTTCCATTTG+AGG | + | chr6.3:3282426-3282445 | None:intergenic | 45.0% | |
| TTGTCCAGCACAAACCATTG+AGG | + | chr6.3:3281940-3281959 | None:intergenic | 45.0% | |
| ! | ACTTCCTCAATGGTTTGTGC+TGG | - | chr6.3:3281933-3281952 | MS.gene026933:intron | 45.0% |
| ! | TACACTTACCCGTCCACTTT+TGG | + | chr6.3:3281021-3281040 | None:intergenic | 45.0% |
| !! | CGTAACGTTGTTGGTGTCAT+AGG | - | chr6.3:3278137-3278156 | MS.gene026933:CDS | 45.0% |
| !! | GAGAGAACTAGAGTGCTGTT+TGG | + | chr6.3:3280936-3280955 | None:intergenic | 45.0% |
| !! | GCTTGCTATTTCTCTCGCAA+AGG | - | chr6.3:3282344-3282363 | MS.gene026933:intron | 45.0% |
| !!! | AACTATTTTAAAAATAAATA+AGG | - | chr6.3:3282148-3282167 | MS.gene026933:intron | 5.0% |
| !!! | ATATTTTAAAATTAGATATT+TGG | + | chr6.3:3279403-3279422 | None:intergenic | 5.0% |
| !!! | ATTTTATTATTTTTTTAAGA+GGG | - | chr6.3:3280026-3280045 | MS.gene026933:intron | 5.0% |
| !!! | TATTTTATTATTTTTTTAAG+AGG | - | chr6.3:3280025-3280044 | MS.gene026933:intron | 5.0% |
| AGCTTGGCAGGACATTGCAT+AGG | + | chr6.3:3279163-3279182 | None:intergenic | 50.0% | |
| CAATGTCCTGCCAAGCTATG+AGG | - | chr6.3:3279166-3279185 | MS.gene026933:intron | 50.0% | |
| CTATGCCACCAAAAGTGGAC+GGG | - | chr6.3:3281010-3281029 | MS.gene026933:intron | 50.0% | |
| GAGATCTCACGAACTCCAGT+TGG | + | chr6.3:3282404-3282423 | None:intergenic | 50.0% | |
| !! | ACTTACCCGTCCACTTTTGG+TGG | + | chr6.3:3281018-3281037 | None:intergenic | 50.0% |
| !! | GTGCTGTTTGGGTGCACAAA+AGG | + | chr6.3:3280924-3280943 | None:intergenic | 50.0% |
| ATGAGCCCTCATAGCTTGGC+AGG | + | chr6.3:3279175-3279194 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 3278113 | 3282448 | 3278113 | ID=MS.gene026933 |
| chr6.3 | mRNA | 3278113 | 3282448 | 3278113 | ID=MS.gene026933.t1;Parent=MS.gene026933 |
| chr6.3 | exon | 3282403 | 3282448 | 3282403 | ID=MS.gene026933.t1.exon1;Parent=MS.gene026933.t1 |
| chr6.3 | CDS | 3282403 | 3282448 | 3282403 | ID=cds.MS.gene026933.t1;Parent=MS.gene026933.t1 |
| chr6.3 | exon | 3282215 | 3282251 | 3282215 | ID=MS.gene026933.t1.exon2;Parent=MS.gene026933.t1 |
| chr6.3 | CDS | 3282215 | 3282251 | 3282215 | ID=cds.MS.gene026933.t1;Parent=MS.gene026933.t1 |
| chr6.3 | exon | 3279530 | 3279746 | 3279530 | ID=MS.gene026933.t1.exon3;Parent=MS.gene026933.t1 |
| chr6.3 | CDS | 3279530 | 3279746 | 3279530 | ID=cds.MS.gene026933.t1;Parent=MS.gene026933.t1 |
| chr6.3 | exon | 3278787 | 3278948 | 3278787 | ID=MS.gene026933.t1.exon4;Parent=MS.gene026933.t1 |
| chr6.3 | CDS | 3278787 | 3278948 | 3278787 | ID=cds.MS.gene026933.t1;Parent=MS.gene026933.t1 |
| chr6.3 | exon | 3278564 | 3278686 | 3278564 | ID=MS.gene026933.t1.exon5;Parent=MS.gene026933.t1 |
| chr6.3 | CDS | 3278564 | 3278686 | 3278564 | ID=cds.MS.gene026933.t1;Parent=MS.gene026933.t1 |
| chr6.3 | exon | 3278113 | 3278268 | 3278113 | ID=MS.gene026933.t1.exon6;Parent=MS.gene026933.t1 |
| chr6.3 | CDS | 3278113 | 3278268 | 3278113 | ID=cds.MS.gene026933.t1;Parent=MS.gene026933.t1 |
| Gene Sequence |
| Protein sequence |
