Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026679.t1 | XP_013466427.1 | 97.1 | 244 | 6 | 1 | 1 | 243 | 1 | 244 | 1.00E-124 | 456.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026679.t1 | Q8L9J7 | 78.5 | 214 | 46 | 0 | 1 | 214 | 1 | 214 | 2.2e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026679.t1 | A0A072VGC4 | 97.1 | 244 | 6 | 1 | 1 | 243 | 1 | 244 | 7.5e-125 | 456.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044269 | MS.gene026679 | PPI |
| MS.gene00279 | MS.gene026679 | PPI |
| MS.gene026679 | MS.gene004537 | PPI |
| MS.gene90281 | MS.gene026679 | PPI |
| MS.gene79032 | MS.gene026679 | PPI |
| MS.gene69746 | MS.gene026679 | PPI |
| MS.gene026679 | MS.gene026937 | PPI |
| MS.gene026679 | MS.gene70529 | PPI |
| MS.gene026679 | MS.gene46188 | PPI |
| MS.gene026679 | MS.gene048962 | PPI |
| MS.gene026679 | MS.gene25769 | PPI |
| MS.gene68896 | MS.gene026679 | PPI |
| MS.gene54644 | MS.gene026679 | PPI |
| MS.gene57091 | MS.gene026679 | PPI |
| MS.gene026679 | MS.gene79036 | PPI |
| MS.gene026679 | MS.gene026934 | PPI |
| MS.gene026933 | MS.gene026679 | PPI |
| MS.gene026679 | MS.gene54643 | PPI |
| MS.gene79035 | MS.gene026679 | PPI |
| MS.gene026935 | MS.gene026679 | PPI |
| MS.gene54638 | MS.gene026679 | PPI |
| MS.gene026679 | MS.gene026939 | PPI |
| MS.gene52388 | MS.gene026679 | PPI |
| MS.gene54672 | MS.gene026679 | PPI |
| MS.gene55828 | MS.gene026679 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026679.t1 | MTR_1g029380 | 97.131 | 244 | 6 | 1 | 1 | 243 | 1 | 244 | 3.03e-169 | 466 |
| MS.gene026679.t1 | MTR_3g089125 | 75.709 | 247 | 53 | 2 | 1 | 240 | 1 | 247 | 5.25e-133 | 375 |
| MS.gene026679.t1 | MTR_8g042490 | 46.190 | 210 | 113 | 0 | 9 | 218 | 18 | 227 | 7.46e-62 | 194 |
| MS.gene026679.t1 | MTR_3g080990 | 43.096 | 239 | 125 | 2 | 2 | 239 | 5 | 233 | 1.96e-58 | 186 |
| MS.gene026679.t1 | MTR_2g073190 | 47.297 | 222 | 115 | 1 | 2 | 221 | 11 | 232 | 2.76e-58 | 196 |
| MS.gene026679.t1 | MTR_3g090950 | 43.162 | 234 | 120 | 3 | 9 | 239 | 10 | 233 | 9.60e-55 | 176 |
| MS.gene026679.t1 | MTR_3g090940 | 45.192 | 208 | 111 | 2 | 9 | 213 | 10 | 217 | 1.80e-54 | 176 |
| MS.gene026679.t1 | MTR_8g099730 | 40.693 | 231 | 136 | 1 | 2 | 231 | 15 | 245 | 3.37e-54 | 175 |
| MS.gene026679.t1 | MTR_1g028460 | 45.370 | 216 | 115 | 2 | 9 | 221 | 10 | 225 | 6.25e-54 | 174 |
| MS.gene026679.t1 | MTR_6g007633 | 42.273 | 220 | 125 | 2 | 7 | 224 | 10 | 229 | 2.97e-51 | 167 |
| MS.gene026679.t1 | MTR_2g436310 | 43.379 | 219 | 121 | 2 | 6 | 223 | 6 | 222 | 1.87e-49 | 162 |
| MS.gene026679.t1 | MTR_7g007490 | 43.439 | 221 | 118 | 4 | 7 | 224 | 12 | 228 | 3.47e-49 | 162 |
| MS.gene026679.t1 | MTR_5g092600 | 42.453 | 212 | 115 | 3 | 20 | 228 | 24 | 231 | 1.33e-48 | 160 |
| MS.gene026679.t1 | MTR_6g007623 | 41.593 | 226 | 130 | 2 | 7 | 230 | 7 | 232 | 4.36e-48 | 159 |
| MS.gene026679.t1 | MTR_6g007637 | 42.056 | 214 | 122 | 2 | 2 | 213 | 6 | 219 | 4.76e-46 | 154 |
| MS.gene026679.t1 | MTR_5g067530 | 38.462 | 234 | 139 | 3 | 2 | 234 | 7 | 236 | 3.01e-44 | 150 |
| MS.gene026679.t1 | MTR_2g007890 | 36.975 | 238 | 141 | 4 | 5 | 238 | 9 | 241 | 1.27e-41 | 144 |
| MS.gene026679.t1 | MTR_8g096320 | 36.444 | 225 | 139 | 3 | 6 | 228 | 10 | 232 | 1.58e-41 | 142 |
| MS.gene026679.t1 | MTR_4g106990 | 42.347 | 196 | 111 | 2 | 26 | 219 | 36 | 231 | 3.25e-41 | 141 |
| MS.gene026679.t1 | MTR_8g096310 | 35.217 | 230 | 141 | 4 | 2 | 226 | 6 | 232 | 3.53e-41 | 142 |
| MS.gene026679.t1 | MTR_7g405710 | 38.618 | 246 | 138 | 5 | 1 | 238 | 1 | 241 | 1.25e-39 | 138 |
| MS.gene026679.t1 | MTR_3g098910 | 37.736 | 212 | 124 | 3 | 6 | 213 | 10 | 217 | 1.63e-39 | 139 |
| MS.gene026679.t1 | MTR_8g099730 | 39.205 | 176 | 106 | 1 | 57 | 231 | 6 | 181 | 5.43e-39 | 134 |
| MS.gene026679.t1 | MTR_7g405730 | 37.743 | 257 | 143 | 5 | 1 | 243 | 1 | 254 | 6.35e-39 | 136 |
| MS.gene026679.t1 | MTR_6g007610 | 36.134 | 238 | 132 | 6 | 3 | 226 | 6 | 237 | 3.68e-33 | 120 |
| MS.gene026679.t1 | MTR_3g098930 | 40.000 | 185 | 110 | 1 | 6 | 190 | 11 | 194 | 5.61e-33 | 119 |
| MS.gene026679.t1 | MTR_8g096320 | 36.000 | 175 | 110 | 2 | 56 | 228 | 3 | 177 | 1.26e-30 | 112 |
| MS.gene026679.t1 | MTR_6g034600 | 42.553 | 94 | 50 | 1 | 106 | 199 | 3 | 92 | 6.00e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026679.t1 | AT1G21460 | 75.109 | 229 | 55 | 1 | 1 | 227 | 1 | 229 | 2.27e-124 | 353 |
| MS.gene026679.t1 | AT1G21460 | 78.421 | 190 | 41 | 0 | 1 | 190 | 1 | 190 | 1.07e-106 | 306 |
| MS.gene026679.t1 | AT5G53190 | 46.818 | 220 | 114 | 2 | 2 | 218 | 3 | 222 | 6.02e-59 | 187 |
| MS.gene026679.t1 | AT5G62850 | 43.162 | 234 | 126 | 3 | 4 | 230 | 7 | 240 | 3.88e-58 | 184 |
| MS.gene026679.t1 | AT4G10850 | 45.755 | 212 | 111 | 3 | 1 | 209 | 6 | 216 | 3.74e-55 | 177 |
| MS.gene026679.t1 | AT1G66770 | 44.240 | 217 | 118 | 3 | 1 | 214 | 6 | 222 | 3.90e-55 | 177 |
| MS.gene026679.t1 | AT3G14770 | 44.860 | 214 | 116 | 1 | 9 | 222 | 18 | 229 | 8.54e-55 | 176 |
| MS.gene026679.t1 | AT4G15920 | 41.322 | 242 | 130 | 4 | 1 | 233 | 1 | 239 | 2.85e-52 | 170 |
| MS.gene026679.t1 | AT5G40260 | 41.810 | 232 | 129 | 5 | 5 | 231 | 8 | 238 | 2.19e-50 | 165 |
| MS.gene026679.t1 | AT3G16690 | 42.174 | 230 | 112 | 5 | 2 | 223 | 3 | 219 | 5.49e-50 | 163 |
| MS.gene026679.t1 | AT3G16690 | 42.174 | 230 | 112 | 5 | 2 | 223 | 38 | 254 | 1.17e-49 | 164 |
| MS.gene026679.t1 | AT5G62850 | 45.213 | 188 | 102 | 1 | 4 | 190 | 7 | 194 | 6.69e-48 | 157 |
| MS.gene026679.t1 | AT3G28007 | 46.667 | 210 | 107 | 3 | 3 | 209 | 6 | 213 | 8.31e-47 | 156 |
| MS.gene026679.t1 | AT5G50800 | 40.271 | 221 | 122 | 4 | 6 | 223 | 10 | 223 | 8.39e-47 | 157 |
| MS.gene026679.t1 | AT4G25010 | 42.584 | 209 | 114 | 3 | 8 | 213 | 12 | 217 | 1.96e-45 | 153 |
| MS.gene026679.t1 | AT5G13170 | 35.714 | 238 | 147 | 5 | 6 | 239 | 12 | 247 | 4.04e-44 | 150 |
| MS.gene026679.t1 | AT5G50790 | 40.000 | 205 | 120 | 2 | 7 | 210 | 11 | 213 | 6.68e-44 | 149 |
| MS.gene026679.t1 | AT5G23660 | 37.885 | 227 | 134 | 3 | 6 | 231 | 12 | 232 | 1.32e-41 | 144 |
| MS.gene026679.t1 | AT5G40260 | 42.929 | 198 | 107 | 5 | 5 | 197 | 8 | 204 | 5.69e-41 | 140 |
| MS.gene026679.t1 | AT3G48740 | 37.054 | 224 | 137 | 3 | 6 | 227 | 12 | 233 | 9.75e-40 | 139 |
| MS.gene026679.t1 | AT2G39060 | 36.530 | 219 | 135 | 3 | 6 | 223 | 10 | 225 | 9.38e-38 | 133 |
| MS.gene026679.t1 | AT3G16690 | 41.333 | 150 | 72 | 3 | 6 | 147 | 6 | 147 | 1.34e-24 | 97.1 |
Find 48 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTGTCTTCTTTCTTCT+TGG | 0.170147 | 1.2:+15264681 | MS.gene026679:CDS |
| TTCATATACCGTGGCAATAA+AGG | 0.237019 | 1.2:+15266284 | MS.gene026679:CDS |
| TTGAGTACTTACAGCAATAA+AGG | 0.270502 | 1.2:-15266070 | None:intergenic |
| ATACTTGTAACAATCATAAA+TGG | 0.288935 | 1.2:+15265071 | MS.gene026679:CDS |
| TGGTTCACCACTCTCAATTA+TGG | 0.331676 | 1.2:+15265298 | MS.gene026679:CDS |
| AGACAGTTGAGAAGTGTCAT+AGG | 0.343405 | 1.2:-15264668 | None:intergenic |
| TGTGTTGCAGGAAATGCTTT+TGG | 0.344870 | 1.2:+15264445 | MS.gene026679:intron |
| ACTCAAAGGGGACACGTCTT+AGG | 0.350487 | 1.2:+15266376 | MS.gene026679:CDS |
| TTGGAGCCAAGAAGAGAAAA+AGG | 0.355062 | 1.2:-15264468 | None:intergenic |
| TGAGTACTTACAGCAATAAA+GGG | 0.379246 | 1.2:-15266069 | None:intergenic |
| TTGAGTTCCCCTTCTCCCAT+TGG | 0.385482 | 1.2:-15266359 | None:intergenic |
| TCATATACCGTGGCAATAAA+GGG | 0.391647 | 1.2:+15266285 | MS.gene026679:CDS |
| CATAGTGTTTGCACCTAAGA+AGG | 0.399744 | 1.2:+15265133 | MS.gene026679:CDS |
| AAAAGAAGAAGCAATGGAAA+TGG | 0.400581 | 1.2:+15266325 | MS.gene026679:CDS |
| TGGGAGAAGGGGAACTCAAA+GGG | 0.421496 | 1.2:+15266363 | MS.gene026679:CDS |
| TTGCTTTGCATGGTAATTCA+AGG | 0.425094 | 1.2:+15265228 | MS.gene026679:CDS |
| TATTTCTCTGTGGTACCTCA+TGG | 0.428995 | 1.2:+15266019 | MS.gene026679:CDS |
| ATTTCACTGTTTGCTTTGCA+TGG | 0.439879 | 1.2:+15265218 | MS.gene026679:CDS |
| GTAACAATCATAAATGGAAC+AGG | 0.472310 | 1.2:+15265077 | MS.gene026679:CDS |
| TGTGATTTGTAGGTACCAAA+TGG | 0.483257 | 1.2:+15266221 | MS.gene026679:intron |
| AAAGAAGAAGCAATGGAAAT+GGG | 0.488219 | 1.2:+15266326 | MS.gene026679:CDS |
| ACAAATAGTGAAAGGAAGAA+TGG | 0.498561 | 1.2:-15265997 | None:intergenic |
| TTGAGAAGTGTCATAGGGTA+AGG | 0.509943 | 1.2:-15264662 | None:intergenic |
| ATTGTTACAAGTATGTTGTC+TGG | 0.525537 | 1.2:-15265062 | None:intergenic |
| CTGCAAAACCAATGGGAGAA+GGG | 0.534840 | 1.2:+15266351 | MS.gene026679:CDS |
| ACTGCAAAACCAATGGGAGA+AGG | 0.535612 | 1.2:+15266350 | MS.gene026679:CDS |
| TTGCATTCCCTTTATTGCCA+CGG | 0.536676 | 1.2:-15266292 | None:intergenic |
| TGCAAAACCAATGGGAGAAG+GGG | 0.538133 | 1.2:+15266352 | MS.gene026679:CDS |
| ATGGGCACTGCAAAACCAAT+GGG | 0.538420 | 1.2:+15266344 | MS.gene026679:CDS |
| ACCAACAAAAGAAGAAGCAA+TGG | 0.543234 | 1.2:+15266319 | MS.gene026679:CDS |
| TCACTATTTGTATTTCTCTG+TGG | 0.547904 | 1.2:+15266009 | MS.gene026679:CDS |
| ATGGGAGAAGGGGAACTCAA+AGG | 0.550234 | 1.2:+15266362 | MS.gene026679:CDS |
| AAGGAGAAGCTGAAAATAAG+TGG | 0.553518 | 1.2:+15265152 | MS.gene026679:CDS |
| AATGGGCACTGCAAAACCAA+TGG | 0.555676 | 1.2:+15266343 | MS.gene026679:CDS |
| GACAGTTGAGAAGTGTCATA+GGG | 0.555759 | 1.2:-15264667 | None:intergenic |
| TTTGTAGAATCACTTTCAAG+AGG | 0.557302 | 1.2:+15264600 | MS.gene026679:intron |
| TTGTAGGTACCAAATGGAGT+GGG | 0.568840 | 1.2:+15266227 | MS.gene026679:intron |
| AGAGAAATACAAATAGTGAA+AGG | 0.596231 | 1.2:-15266005 | None:intergenic |
| TGCAAACACTGTTATTACAA+AGG | 0.611290 | 1.2:-15265183 | None:intergenic |
| AGTGATCAAAACAAAGAGTG+TGG | 0.615735 | 1.2:+15265966 | MS.gene026679:CDS |
| TTACAGCAATAAAGGGGTCA+CGG | 0.634308 | 1.2:-15266062 | None:intergenic |
| GGGAGAAGGGGAACTCAAAG+GGG | 0.637119 | 1.2:+15266364 | MS.gene026679:CDS |
| ATGTTGTCTGGTGACACAAA+TGG | 0.639503 | 1.2:-15265050 | None:intergenic |
| AAACTTACCATAATTGAGAG+TGG | 0.640874 | 1.2:-15265305 | None:intergenic |
| TTTGTAGGTACCAAATGGAG+TGG | 0.643688 | 1.2:+15266226 | MS.gene026679:intron |
| ATATTGTATTTCATATACCG+TGG | 0.658275 | 1.2:+15266275 | MS.gene026679:CDS |
| GAGTACTTACAGCAATAAAG+GGG | 0.676810 | 1.2:-15266068 | None:intergenic |
| TGTAGGTACCAAATGGAGTG+GGG | 0.700887 | 1.2:+15266228 | MS.gene026679:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTAACAAAAGAAAT+TGG | - | chr1.2:15265930-15265949 | None:intergenic | 10.0% |
| !! | TTTCATATAAACTTTATATA+TGG | + | chr1.2:15264810-15264829 | MS.gene026679:intron | 10.0% |
| !! | AAATATCAACATAAATAAGT+TGG | - | chr1.2:15265560-15265579 | None:intergenic | 15.0% |
| !! | ACCATATAGTAAAAATAATA+GGG | - | chr1.2:15264848-15264867 | None:intergenic | 15.0% |
| !! | TACCATATAGTAAAAATAAT+AGG | - | chr1.2:15264849-15264868 | None:intergenic | 15.0% |
| !! | TATATAATGTACTATGTATA+AGG | - | chr1.2:15265873-15265892 | None:intergenic | 15.0% |
| !! | TATATACATGAAAAAAGATA+AGG | - | chr1.2:15265418-15265437 | None:intergenic | 15.0% |
| !! | AAAAAATGAAGAAAATCACA+TGG | - | chr1.2:15264741-15264760 | None:intergenic | 20.0% |
| !! | AAAAATGAAGAAAATCACAT+GGG | - | chr1.2:15264740-15264759 | None:intergenic | 20.0% |
| !! | AAAGAAATGAATCTATACAT+TGG | - | chr1.2:15264490-15264509 | None:intergenic | 20.0% |
| !! | AAGAAACGAAAAAGATTAAA+AGG | - | chr1.2:15264548-15264567 | None:intergenic | 20.0% |
| !! | AGAAACGAAAAAGATTAAAA+GGG | - | chr1.2:15264547-15264566 | None:intergenic | 20.0% |
| !! | ATACTTGTAACAATCATAAA+TGG | + | chr1.2:15265071-15265090 | MS.gene026679:CDS | 20.0% |
| !! | TAAATAACCAAAACAGAAAA+AGG | - | chr1.2:15265732-15265751 | None:intergenic | 20.0% |
| !! | TGAAAACAATGATTAACAAA+AGG | - | chr1.2:15265760-15265779 | None:intergenic | 20.0% |
| !! | TGAAATTTAACATATGAACT+AGG | + | chr1.2:15266115-15266134 | MS.gene026679:intron | 20.0% |
| !!! | ACCCTATTATTTTTACTATA+TGG | + | chr1.2:15264844-15264863 | MS.gene026679:intron | 20.0% |
| !!! | ATATTCTTGTTTTGAATTCT+TGG | + | chr1.2:15264374-15264393 | MS.gene026679:intron | 20.0% |
| !!! | ATATTTTAAACTGCTTTACA+AGG | + | chr1.2:15265574-15265593 | MS.gene026679:intron | 20.0% |
| !!! | GAAAATGTTCATTTAATTTC+TGG | + | chr1.2:15264964-15264983 | MS.gene026679:intron | 20.0% |
| !!! | GATATTGCACATTTTATATT+CGG | + | chr1.2:15264323-15264342 | MS.gene026679:CDS | 20.0% |
| ! | AAATCAACAGAAAAATTCTC+TGG | + | chr1.2:15264635-15264654 | MS.gene026679:CDS | 25.0% |
| ! | AATAGTTAACCACCTTAATT+AGG | + | chr1.2:15265444-15265463 | MS.gene026679:intron | 25.0% |
| ! | AGAGAAATACAAATAGTGAA+AGG | - | chr1.2:15266008-15266027 | None:intergenic | 25.0% |
| ! | ATATTGTATTTCATATACCG+TGG | + | chr1.2:15266275-15266294 | MS.gene026679:CDS | 25.0% |
| ! | ATCAAATATCCTAATTAAGG+TGG | - | chr1.2:15265456-15265475 | None:intergenic | 25.0% |
| ! | ATGAAAATGATGCAAAACAA+AGG | - | chr1.2:15264796-15264815 | None:intergenic | 25.0% |
| ! | GAGATCAAATATCCTAATTA+AGG | - | chr1.2:15265459-15265478 | None:intergenic | 25.0% |
| ! | TAAATTCTAACGACAAGATA+AGG | - | chr1.2:15265375-15265394 | None:intergenic | 25.0% |
| ! | TATGAAACTAATCATCGAAA+CGG | + | chr1.2:15265526-15265545 | MS.gene026679:intron | 25.0% |
| ! | TGAAAATGATGCAAAACAAA+GGG | - | chr1.2:15264795-15264814 | None:intergenic | 25.0% |
| ! | TGGATTTAATAGGTCAAAAA+AGG | - | chr1.2:15265686-15265705 | None:intergenic | 25.0% |
| ! | TTTAAAAGTGAATGATCATG+TGG | - | chr1.2:15265797-15265816 | None:intergenic | 25.0% |
| !! | GAGTATATGTAACAATTTTC+AGG | + | chr1.2:15265018-15265037 | MS.gene026679:intron | 25.0% |
| !! | GTATTTTCAATCATCATGTA+TGG | + | chr1.2:15265278-15265297 | MS.gene026679:CDS | 25.0% |
| !! | TCCTAAATGAATTTTGTGTA+GGG | - | chr1.2:15265844-15265863 | None:intergenic | 25.0% |
| !! | TTCCTAAATGAATTTTGTGT+AGG | - | chr1.2:15265845-15265864 | None:intergenic | 25.0% |
| !! | TTTTCGTTTCTTGTTCTTTA+TGG | + | chr1.2:15264556-15264575 | MS.gene026679:intron | 25.0% |
| !!! | CATTTTATATTCGGAGTATT+TGG | + | chr1.2:15264332-15264351 | MS.gene026679:CDS | 25.0% |
| !!! | GTGATTTTCTTCATTTTTTG+TGG | + | chr1.2:15264742-15264761 | MS.gene026679:intron | 25.0% |
| !!! | TATGTAACAATTTTCAGGTA+TGG | + | chr1.2:15265023-15265042 | MS.gene026679:intron | 25.0% |
| AAAAGAAGAAGCAATGGAAA+TGG | + | chr1.2:15266325-15266344 | MS.gene026679:CDS | 30.0% | |
| AAACTTACCATAATTGAGAG+TGG | - | chr1.2:15265308-15265327 | None:intergenic | 30.0% | |
| AAAGAAGAAGCAATGGAAAT+GGG | + | chr1.2:15266326-15266345 | MS.gene026679:CDS | 30.0% | |
| ACAAATAGTGAAAGGAAGAA+TGG | - | chr1.2:15266000-15266019 | None:intergenic | 30.0% | |
| ACCCTACACAAAATTCATTT+AGG | + | chr1.2:15265840-15265859 | MS.gene026679:intron | 30.0% | |
| AGGAATAATGAAATGACATG+TGG | + | chr1.2:15266135-15266154 | MS.gene026679:intron | 30.0% | |
| ATTGCCAAATACAATGCAAA+TGG | - | chr1.2:15266174-15266193 | None:intergenic | 30.0% | |
| ATTGTTACAAGTATGTTGTC+TGG | - | chr1.2:15265065-15265084 | None:intergenic | 30.0% | |
| GGAAAAAGATTTCATGCATT+AGG | - | chr1.2:15265665-15265684 | None:intergenic | 30.0% | |
| GTAACAATCATAAATGGAAC+AGG | + | chr1.2:15265077-15265096 | MS.gene026679:CDS | 30.0% | |
| TCACTATTTGTATTTCTCTG+TGG | + | chr1.2:15266009-15266028 | MS.gene026679:CDS | 30.0% | |
| TGAGTACTTACAGCAATAAA+GGG | - | chr1.2:15266072-15266091 | None:intergenic | 30.0% | |
| TGCAAACACTGTTATTACAA+AGG | - | chr1.2:15265186-15265205 | None:intergenic | 30.0% | |
| TGTACCATTTGCATTGTATT+TGG | + | chr1.2:15266167-15266186 | MS.gene026679:intron | 30.0% | |
| TTGAGTACTTACAGCAATAA+AGG | - | chr1.2:15266073-15266092 | None:intergenic | 30.0% | |
| TTTGTAGAATCACTTTCAAG+AGG | + | chr1.2:15264600-15264619 | MS.gene026679:intron | 30.0% | |
| ! | ACTTGCTAAATTGAATGTGA+AGG | - | chr1.2:15264920-15264939 | None:intergenic | 30.0% |
| ! | ATGATAGTGACAAAATGATG+AGG | + | chr1.2:15266192-15266211 | MS.gene026679:intron | 30.0% |
| !! | TTCGATGATTAGTTTCATAG+CGG | - | chr1.2:15265525-15265544 | None:intergenic | 30.0% |
| !!! | AATTCAAGGAAAGTGTTTTG+TGG | + | chr1.2:15265242-15265261 | MS.gene026679:CDS | 30.0% |
| !!! | TGGTTCATTTTTGGTCTATT+AGG | + | chr1.2:15266039-15266058 | MS.gene026679:CDS | 30.0% |
| AAGGAGAAGCTGAAAATAAG+TGG | + | chr1.2:15265152-15265171 | MS.gene026679:CDS | 35.0% | |
| ACCAACAAAAGAAGAAGCAA+TGG | + | chr1.2:15266319-15266338 | MS.gene026679:CDS | 35.0% | |
| AGTGATCAAAACAAAGAGTG+TGG | + | chr1.2:15265966-15265985 | MS.gene026679:CDS | 35.0% | |
| ATTTCACTGTTTGCTTTGCA+TGG | + | chr1.2:15265218-15265237 | MS.gene026679:CDS | 35.0% | |
| CAGAAAAAGGACAACAGAAA+AGG | - | chr1.2:15265719-15265738 | None:intergenic | 35.0% | |
| CTAACGACAAGATAAGGATA+AGG | - | chr1.2:15265369-15265388 | None:intergenic | 35.0% | |
| CTTGTGGATCTGGATTTAAT+AGG | - | chr1.2:15265696-15265715 | None:intergenic | 35.0% | |
| GAGTACTTACAGCAATAAAG+GGG | - | chr1.2:15266071-15266090 | None:intergenic | 35.0% | |
| TAGACCAAAAATGAACCATG+AGG | - | chr1.2:15266037-15266056 | None:intergenic | 35.0% | |
| TCAACTGTCTTCTTTCTTCT+TGG | + | chr1.2:15264681-15264700 | MS.gene026679:CDS | 35.0% | |
| TCATATACCGTGGCAATAAA+GGG | + | chr1.2:15266285-15266304 | MS.gene026679:CDS | 35.0% | |
| TTCATATACCGTGGCAATAA+AGG | + | chr1.2:15266284-15266303 | MS.gene026679:CDS | 35.0% | |
| TTGCTTTGCATGGTAATTCA+AGG | + | chr1.2:15265228-15265247 | MS.gene026679:CDS | 35.0% | |
| ! | ATTTTCAGCTTCTCCTTCTT+AGG | - | chr1.2:15265149-15265168 | None:intergenic | 35.0% |
| ! | CATTTTCTTTCTTGTGTTGC+AGG | + | chr1.2:15264433-15264452 | MS.gene026679:intron | 35.0% |
| ! | CTGTTGTCCTTTTTCTGTTT+TGG | + | chr1.2:15265722-15265741 | MS.gene026679:intron | 35.0% |
| ! | TCCATTGCTTCTTCTTTTGT+TGG | - | chr1.2:15266323-15266342 | None:intergenic | 35.0% |
| ! | TGTGATTTGTAGGTACCAAA+TGG | + | chr1.2:15266221-15266240 | MS.gene026679:intron | 35.0% |
| !! | GAGGCAATTTTGTGATTTGT+AGG | + | chr1.2:15266211-15266230 | MS.gene026679:intron | 35.0% |
| !! | TTTTGGCCTTTTTCTCTTCT+TGG | + | chr1.2:15264462-15264481 | MS.gene026679:CDS | 35.0% |
| AAAAATGACCCCACTCCATT+TGG | - | chr1.2:15266239-15266258 | None:intergenic | 40.0% | |
| ATGTTGTCTGGTGACACAAA+TGG | - | chr1.2:15265053-15265072 | None:intergenic | 40.0% | |
| ATTCCTAAGTCTCGAGTCTT+TGG | + | chr1.2:15265497-15265516 | MS.gene026679:intron | 40.0% | |
| CATAGTGTTTGCACCTAAGA+AGG | + | chr1.2:15265133-15265152 | MS.gene026679:CDS | 40.0% | |
| TATTTCTCTGTGGTACCTCA+TGG | + | chr1.2:15266019-15266038 | MS.gene026679:CDS | 40.0% | |
| TGGTTCACCACTCTCAATTA+TGG | + | chr1.2:15265298-15265317 | MS.gene026679:CDS | 40.0% | |
| TTACAGCAATAAAGGGGTCA+CGG | - | chr1.2:15266065-15266084 | None:intergenic | 40.0% | |
| TTGCATTCCCTTTATTGCCA+CGG | - | chr1.2:15266295-15266314 | None:intergenic | 40.0% | |
| TTGGAGCCAAGAAGAGAAAA+AGG | - | chr1.2:15264471-15264490 | None:intergenic | 40.0% | |
| TTGTAGGTACCAAATGGAGT+GGG | + | chr1.2:15266227-15266246 | MS.gene026679:intron | 40.0% | |
| TTTGTAGGTACCAAATGGAG+TGG | + | chr1.2:15266226-15266245 | MS.gene026679:intron | 40.0% | |
| ! | GGTACCTCATGGTTCATTTT+TGG | + | chr1.2:15266030-15266049 | MS.gene026679:CDS | 40.0% |
| ! | TGTGTTGCAGGAAATGCTTT+TGG | + | chr1.2:15264445-15264464 | MS.gene026679:intron | 40.0% |
| !! | AGACAGTTGAGAAGTGTCAT+AGG | - | chr1.2:15264671-15264690 | None:intergenic | 40.0% |
| !! | GACAGTTGAGAAGTGTCATA+GGG | - | chr1.2:15264670-15264689 | None:intergenic | 40.0% |
| !! | TTGAGAAGTGTCATAGGGTA+AGG | - | chr1.2:15264665-15264684 | None:intergenic | 40.0% |
| !!! | AATGGAGTGGGGTCATTTTT+AGG | + | chr1.2:15266239-15266258 | MS.gene026679:CDS | 40.0% |
| !!! | ATGGAGTGGGGTCATTTTTA+GGG | + | chr1.2:15266240-15266259 | MS.gene026679:CDS | 40.0% |
| ACAGAAAAGGCTTGTGGATC+TGG | - | chr1.2:15265706-15265725 | None:intergenic | 45.0% | |
| ACTGCAAAACCAATGGGAGA+AGG | + | chr1.2:15266350-15266369 | MS.gene026679:CDS | 45.0% | |
| AGGACAACAGAAAAGGCTTG+TGG | - | chr1.2:15265712-15265731 | None:intergenic | 45.0% | |
| CTGCAAAACCAATGGGAGAA+GGG | + | chr1.2:15266351-15266370 | MS.gene026679:CDS | 45.0% | |
| GATCCAAAGACTCGAGACTT+AGG | - | chr1.2:15265503-15265522 | None:intergenic | 45.0% | |
| TGCAAAACCAATGGGAGAAG+GGG | + | chr1.2:15266352-15266371 | MS.gene026679:CDS | 45.0% | |
| TGTAGGTACCAAATGGAGTG+GGG | + | chr1.2:15266228-15266247 | MS.gene026679:intron | 45.0% | |
| ! | AATGGGCACTGCAAAACCAA+TGG | + | chr1.2:15266343-15266362 | MS.gene026679:CDS | 45.0% |
| ! | ATGGGCACTGCAAAACCAAT+GGG | + | chr1.2:15266344-15266363 | MS.gene026679:CDS | 45.0% |
| ATGGGAGAAGGGGAACTCAA+AGG | + | chr1.2:15266362-15266381 | MS.gene026679:CDS | 50.0% | |
| TGGGAGAAGGGGAACTCAAA+GGG | + | chr1.2:15266363-15266382 | MS.gene026679:CDS | 50.0% | |
| TTGAGTTCCCCTTCTCCCAT+TGG | - | chr1.2:15266362-15266381 | None:intergenic | 50.0% | |
| GGGAGAAGGGGAACTCAAAG+GGG | + | chr1.2:15266364-15266383 | MS.gene026679:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 15264320 | 15266397 | 15264320 | ID=MS.gene026679 |
| chr1.2 | mRNA | 15264320 | 15266397 | 15264320 | ID=MS.gene026679.t1;Parent=MS.gene026679 |
| chr1.2 | exon | 15264320 | 15264353 | 15264320 | ID=MS.gene026679.t1.exon1;Parent=MS.gene026679.t1 |
| chr1.2 | CDS | 15264320 | 15264353 | 15264320 | ID=cds.MS.gene026679.t1;Parent=MS.gene026679.t1 |
| chr1.2 | exon | 15264455 | 15264491 | 15264455 | ID=MS.gene026679.t1.exon2;Parent=MS.gene026679.t1 |
| chr1.2 | CDS | 15264455 | 15264491 | 15264455 | ID=cds.MS.gene026679.t1;Parent=MS.gene026679.t1 |
| chr1.2 | exon | 15264607 | 15264702 | 15264607 | ID=MS.gene026679.t1.exon3;Parent=MS.gene026679.t1 |
| chr1.2 | CDS | 15264607 | 15264702 | 15264607 | ID=cds.MS.gene026679.t1;Parent=MS.gene026679.t1 |
| chr1.2 | exon | 15265040 | 15265319 | 15265040 | ID=MS.gene026679.t1.exon4;Parent=MS.gene026679.t1 |
| chr1.2 | CDS | 15265040 | 15265319 | 15265040 | ID=cds.MS.gene026679.t1;Parent=MS.gene026679.t1 |
| chr1.2 | exon | 15265961 | 15266080 | 15265961 | ID=MS.gene026679.t1.exon5;Parent=MS.gene026679.t1 |
| chr1.2 | CDS | 15265961 | 15266080 | 15265961 | ID=cds.MS.gene026679.t1;Parent=MS.gene026679.t1 |
| chr1.2 | exon | 15266233 | 15266397 | 15266233 | ID=MS.gene026679.t1.exon6;Parent=MS.gene026679.t1 |
| chr1.2 | CDS | 15266233 | 15266397 | 15266233 | ID=cds.MS.gene026679.t1;Parent=MS.gene026679.t1 |
| Gene Sequence |
| Protein sequence |
