Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93151.t1 | XP_013466427.1 | 97.1 | 244 | 6 | 1 | 1 | 243 | 1 | 244 | 1.80E-124 | 455.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93151.t1 | Q8L9J7 | 78.5 | 214 | 46 | 0 | 1 | 214 | 1 | 214 | 2.2e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93151.t1 | A0A072VGC4 | 97.1 | 244 | 6 | 1 | 1 | 243 | 1 | 244 | 1.3e-124 | 455.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048962 | MS.gene93151 | PPI |
| MS.gene93151 | MS.gene79036 | PPI |
| MS.gene00279 | MS.gene93151 | PPI |
| MS.gene90281 | MS.gene93151 | PPI |
| MS.gene026934 | MS.gene93151 | PPI |
| MS.gene79032 | MS.gene93151 | PPI |
| MS.gene69746 | MS.gene93151 | PPI |
| MS.gene026937 | MS.gene93151 | PPI |
| MS.gene70529 | MS.gene93151 | PPI |
| MS.gene68896 | MS.gene93151 | PPI |
| MS.gene54644 | MS.gene93151 | PPI |
| MS.gene54643 | MS.gene93151 | PPI |
| MS.gene57091 | MS.gene93151 | PPI |
| MS.gene93151 | MS.gene46188 | PPI |
| MS.gene004537 | MS.gene93151 | PPI |
| MS.gene55828 | MS.gene93151 | PPI |
| MS.gene026939 | MS.gene93151 | PPI |
| MS.gene026933 | MS.gene93151 | PPI |
| MS.gene79035 | MS.gene93151 | PPI |
| MS.gene044269 | MS.gene93151 | PPI |
| MS.gene026935 | MS.gene93151 | PPI |
| MS.gene54638 | MS.gene93151 | PPI |
| MS.gene25769 | MS.gene93151 | PPI |
| MS.gene52388 | MS.gene93151 | PPI |
| MS.gene54672 | MS.gene93151 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93151.t1 | MTR_1g029380 | 97.131 | 244 | 6 | 1 | 1 | 243 | 1 | 244 | 4.60e-169 | 466 |
| MS.gene93151.t1 | MTR_3g089125 | 75.304 | 247 | 54 | 2 | 1 | 240 | 1 | 247 | 2.97e-132 | 373 |
| MS.gene93151.t1 | MTR_8g042490 | 46.190 | 210 | 113 | 0 | 9 | 218 | 18 | 227 | 7.46e-62 | 194 |
| MS.gene93151.t1 | MTR_3g080990 | 43.096 | 239 | 125 | 2 | 2 | 239 | 5 | 233 | 2.09e-58 | 186 |
| MS.gene93151.t1 | MTR_2g073190 | 47.297 | 222 | 115 | 1 | 2 | 221 | 11 | 232 | 2.43e-58 | 196 |
| MS.gene93151.t1 | MTR_8g099730 | 40.693 | 231 | 136 | 1 | 2 | 231 | 15 | 245 | 3.27e-54 | 175 |
| MS.gene93151.t1 | MTR_3g090950 | 42.735 | 234 | 121 | 3 | 9 | 239 | 10 | 233 | 4.76e-54 | 174 |
| MS.gene93151.t1 | MTR_1g028460 | 44.954 | 218 | 117 | 2 | 9 | 223 | 10 | 227 | 7.68e-54 | 174 |
| MS.gene93151.t1 | MTR_3g090940 | 44.712 | 208 | 112 | 2 | 9 | 213 | 10 | 217 | 1.13e-53 | 173 |
| MS.gene93151.t1 | MTR_6g007633 | 42.273 | 220 | 125 | 2 | 7 | 224 | 10 | 229 | 2.75e-51 | 167 |
| MS.gene93151.t1 | MTR_2g436310 | 43.379 | 219 | 121 | 2 | 6 | 223 | 6 | 222 | 1.05e-49 | 163 |
| MS.gene93151.t1 | MTR_7g007490 | 42.793 | 222 | 118 | 4 | 7 | 224 | 12 | 228 | 4.44e-49 | 162 |
| MS.gene93151.t1 | MTR_5g092600 | 42.453 | 212 | 115 | 3 | 20 | 228 | 24 | 231 | 1.15e-48 | 160 |
| MS.gene93151.t1 | MTR_6g007623 | 41.593 | 226 | 130 | 2 | 7 | 230 | 7 | 232 | 4.08e-48 | 159 |
| MS.gene93151.t1 | MTR_6g007637 | 42.056 | 214 | 122 | 2 | 2 | 213 | 6 | 219 | 5.19e-46 | 154 |
| MS.gene93151.t1 | MTR_5g067530 | 38.889 | 234 | 138 | 3 | 2 | 234 | 7 | 236 | 7.29e-45 | 151 |
| MS.gene93151.t1 | MTR_2g007890 | 37.395 | 238 | 140 | 4 | 5 | 238 | 9 | 241 | 3.41e-42 | 145 |
| MS.gene93151.t1 | MTR_4g106990 | 42.857 | 196 | 110 | 2 | 26 | 219 | 36 | 231 | 6.28e-42 | 143 |
| MS.gene93151.t1 | MTR_8g096320 | 36.444 | 225 | 139 | 3 | 6 | 228 | 10 | 232 | 1.86e-41 | 142 |
| MS.gene93151.t1 | MTR_8g096310 | 35.217 | 230 | 141 | 4 | 2 | 226 | 6 | 232 | 5.03e-41 | 142 |
| MS.gene93151.t1 | MTR_7g405710 | 39.024 | 246 | 137 | 5 | 1 | 238 | 1 | 241 | 3.11e-40 | 140 |
| MS.gene93151.t1 | MTR_7g405730 | 41.204 | 216 | 120 | 3 | 1 | 211 | 1 | 214 | 1.55e-39 | 137 |
| MS.gene93151.t1 | MTR_3g098910 | 37.736 | 212 | 124 | 3 | 6 | 213 | 10 | 217 | 1.66e-39 | 139 |
| MS.gene93151.t1 | MTR_8g099730 | 39.205 | 176 | 106 | 1 | 57 | 231 | 6 | 181 | 4.77e-39 | 134 |
| MS.gene93151.t1 | MTR_6g007610 | 36.134 | 238 | 132 | 6 | 3 | 226 | 6 | 237 | 2.95e-33 | 120 |
| MS.gene93151.t1 | MTR_3g098930 | 40.000 | 185 | 110 | 1 | 6 | 190 | 11 | 194 | 5.73e-33 | 119 |
| MS.gene93151.t1 | MTR_8g096320 | 36.000 | 175 | 110 | 2 | 56 | 228 | 3 | 177 | 1.60e-30 | 112 |
| MS.gene93151.t1 | MTR_6g034600 | 42.553 | 94 | 50 | 1 | 106 | 199 | 3 | 92 | 5.94e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93151.t1 | AT1G21460 | 75.109 | 229 | 55 | 1 | 1 | 227 | 1 | 229 | 3.41e-124 | 352 |
| MS.gene93151.t1 | AT1G21460 | 78.421 | 190 | 41 | 0 | 1 | 190 | 1 | 190 | 1.05e-106 | 306 |
| MS.gene93151.t1 | AT5G53190 | 47.511 | 221 | 111 | 3 | 2 | 218 | 3 | 222 | 5.52e-59 | 187 |
| MS.gene93151.t1 | AT5G62850 | 43.162 | 234 | 126 | 3 | 4 | 230 | 7 | 240 | 3.06e-58 | 185 |
| MS.gene93151.t1 | AT4G10850 | 41.129 | 248 | 140 | 4 | 1 | 243 | 6 | 252 | 5.87e-56 | 179 |
| MS.gene93151.t1 | AT3G14770 | 44.860 | 214 | 116 | 1 | 9 | 222 | 18 | 229 | 8.09e-55 | 176 |
| MS.gene93151.t1 | AT1G66770 | 43.779 | 217 | 119 | 3 | 1 | 214 | 6 | 222 | 1.76e-54 | 176 |
| MS.gene93151.t1 | AT4G15920 | 41.909 | 241 | 130 | 3 | 1 | 233 | 1 | 239 | 6.98e-53 | 171 |
| MS.gene93151.t1 | AT5G40260 | 42.241 | 232 | 128 | 5 | 5 | 231 | 8 | 238 | 4.28e-51 | 167 |
| MS.gene93151.t1 | AT3G16690 | 42.174 | 230 | 112 | 5 | 2 | 223 | 3 | 219 | 5.61e-50 | 163 |
| MS.gene93151.t1 | AT3G16690 | 42.174 | 230 | 112 | 5 | 2 | 223 | 38 | 254 | 9.85e-50 | 164 |
| MS.gene93151.t1 | AT5G62850 | 45.213 | 188 | 102 | 1 | 4 | 190 | 7 | 194 | 6.07e-48 | 157 |
| MS.gene93151.t1 | AT3G28007 | 46.667 | 210 | 107 | 3 | 3 | 209 | 6 | 213 | 8.49e-47 | 156 |
| MS.gene93151.t1 | AT5G50800 | 40.271 | 221 | 122 | 4 | 6 | 223 | 10 | 223 | 1.48e-46 | 157 |
| MS.gene93151.t1 | AT4G25010 | 42.584 | 209 | 114 | 3 | 8 | 213 | 12 | 217 | 3.90e-45 | 152 |
| MS.gene93151.t1 | AT5G13170 | 36.134 | 238 | 146 | 5 | 6 | 239 | 12 | 247 | 1.06e-44 | 152 |
| MS.gene93151.t1 | AT5G50790 | 40.000 | 205 | 120 | 2 | 7 | 210 | 11 | 213 | 8.55e-44 | 149 |
| MS.gene93151.t1 | AT5G40260 | 43.434 | 198 | 106 | 5 | 5 | 197 | 8 | 204 | 1.25e-41 | 141 |
| MS.gene93151.t1 | AT5G23660 | 37.885 | 227 | 134 | 3 | 6 | 231 | 12 | 232 | 1.36e-41 | 144 |
| MS.gene93151.t1 | AT3G48740 | 37.054 | 224 | 137 | 3 | 6 | 227 | 12 | 233 | 8.58e-40 | 139 |
| MS.gene93151.t1 | AT2G39060 | 36.530 | 219 | 135 | 3 | 6 | 223 | 10 | 225 | 1.00e-37 | 133 |
| MS.gene93151.t1 | AT3G16690 | 40.260 | 154 | 75 | 4 | 2 | 147 | 3 | 147 | 1.31e-24 | 97.1 |
Find 49 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTGTCTTCTTTCTTCT+TGG | 0.170147 | 1.3:+15318357 | MS.gene93151:CDS |
| TTCATATACCGTGGCAATAA+AGG | 0.237019 | 1.3:+15319946 | MS.gene93151:CDS |
| TTGAGTACTTACAGCAATAA+AGG | 0.270502 | 1.3:-15319734 | None:intergenic |
| ATACTTGTAACAATCATAAA+TGG | 0.288935 | 1.3:+15318747 | MS.gene93151:CDS |
| TGTGGTGCAGGAAATGCTTT+TGG | 0.290451 | 1.3:+15318075 | MS.gene93151:intron |
| TGGTTCACCACTCTCAATTA+TGG | 0.331676 | 1.3:+15318974 | MS.gene93151:CDS |
| AGACAGTTGAGAAGTGTCAT+AGG | 0.343405 | 1.3:-15318344 | None:intergenic |
| TTGGAGCCAAGAAGAGAAAA+AGG | 0.355062 | 1.3:-15318098 | None:intergenic |
| TGAGTACTTACAGCAATAAA+GGG | 0.379246 | 1.3:-15319733 | None:intergenic |
| TTGAGTTCCCCTTCTCCCAT+TGG | 0.385482 | 1.3:-15320021 | None:intergenic |
| TCATATACCGTGGCAATAAA+GGG | 0.391647 | 1.3:+15319947 | MS.gene93151:CDS |
| ACTCAAAGGGAACACGTCTT+AGG | 0.397334 | 1.3:+15320038 | MS.gene93151:CDS |
| CATAGTGTTTGCACCTAAGA+AGG | 0.399744 | 1.3:+15318809 | MS.gene93151:CDS |
| AAAAGAAGAAGCAATGGAAA+TGG | 0.400581 | 1.3:+15319987 | MS.gene93151:CDS |
| AATTACCATGCAAAGCAAAC+AGG | 0.405685 | 1.3:-15318899 | None:intergenic |
| TTGCTTTGCATGGTAATTCA+AGG | 0.425094 | 1.3:+15318904 | MS.gene93151:CDS |
| ATTTCCCTGTTTGCTTTGCA+TGG | 0.427034 | 1.3:+15318894 | MS.gene93151:CDS |
| TATTTCTCTGTGGTACCTCA+TGG | 0.428995 | 1.3:+15319683 | MS.gene93151:CDS |
| GTAACAATCATAAATGGAAC+AGG | 0.472310 | 1.3:+15318753 | MS.gene93151:CDS |
| TGGGAGAAGGGGAACTCAAA+GGG | 0.477064 | 1.3:+15320025 | MS.gene93151:CDS |
| TGTGATTTGTAGGTACCAAA+TGG | 0.483257 | 1.3:+15319883 | MS.gene93151:intron |
| AAAGAAGAAGCAATGGAAAT+GGG | 0.488219 | 1.3:+15319988 | MS.gene93151:CDS |
| ACAAATAGTGAAAGGAAGAA+TGG | 0.498561 | 1.3:-15319661 | None:intergenic |
| TTGAGAAGTGTCATAGGGTA+AGG | 0.509943 | 1.3:-15318338 | None:intergenic |
| ATTGTTACAAGTATGTTGTC+TGG | 0.525537 | 1.3:-15318738 | None:intergenic |
| CTGCAAAACCAATGGGAGAA+GGG | 0.534840 | 1.3:+15320013 | MS.gene93151:CDS |
| ACTGCAAAACCAATGGGAGA+AGG | 0.535612 | 1.3:+15320012 | MS.gene93151:CDS |
| TGCAAAACCAATGGGAGAAG+GGG | 0.538133 | 1.3:+15320014 | MS.gene93151:CDS |
| ATGGGCACTGCAAAACCAAT+GGG | 0.538420 | 1.3:+15320006 | MS.gene93151:CDS |
| TTGCATTCCCTTTATTGCCA+CGG | 0.539158 | 1.3:-15319954 | None:intergenic |
| ACCAACAAAAGAAGAAGCAA+TGG | 0.543234 | 1.3:+15319981 | MS.gene93151:CDS |
| TCACTATTTGTATTTCTCTG+TGG | 0.547904 | 1.3:+15319673 | MS.gene93151:CDS |
| ATGGGAGAAGGGGAACTCAA+AGG | 0.550234 | 1.3:+15320024 | MS.gene93151:CDS |
| AAGGAGAAGCTGAAAATAAG+TGG | 0.553518 | 1.3:+15318828 | MS.gene93151:CDS |
| AATGGGCACTGCAAAACCAA+TGG | 0.555676 | 1.3:+15320005 | MS.gene93151:CDS |
| GACAGTTGAGAAGTGTCATA+GGG | 0.555759 | 1.3:-15318343 | None:intergenic |
| TTTGTAGAATCACTTTCAAG+AGG | 0.557302 | 1.3:+15318276 | MS.gene93151:intron |
| TTGTAGGTACCAAATGGAGT+GGG | 0.568840 | 1.3:+15319889 | MS.gene93151:intron |
| AGAGAAATACAAATAGTGAA+AGG | 0.596231 | 1.3:-15319669 | None:intergenic |
| ATTACCATGCAAAGCAAACA+GGG | 0.608931 | 1.3:-15318898 | None:intergenic |
| AGTGATCAAAACAAAGAGTG+TGG | 0.615735 | 1.3:+15319630 | MS.gene93151:CDS |
| TGCAAACACTGTTATTACAA+AGG | 0.628358 | 1.3:-15318859 | None:intergenic |
| TTACAGCAATAAAGGGGTCA+CGG | 0.634308 | 1.3:-15319726 | None:intergenic |
| ATGTTGTCTGGTGACACAAA+TGG | 0.639503 | 1.3:-15318726 | None:intergenic |
| AAACTTACCATAATTGAGAG+TGG | 0.640874 | 1.3:-15318981 | None:intergenic |
| TTTGTAGGTACCAAATGGAG+TGG | 0.643688 | 1.3:+15319888 | MS.gene93151:intron |
| ATATTGTATTTCATATACCG+TGG | 0.658275 | 1.3:+15319937 | MS.gene93151:CDS |
| GAGTACTTACAGCAATAAAG+GGG | 0.676810 | 1.3:-15319732 | None:intergenic |
| TGTAGGTACCAAATGGAGTG+GGG | 0.700887 | 1.3:+15319890 | MS.gene93151:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTAACAAAAGAAAT+TGG | - | chr1.3:15319594-15319613 | None:intergenic | 10.0% |
| !! | TTTCATATAAACTTTATATA+TGG | + | chr1.3:15318486-15318505 | MS.gene93151:intron | 10.0% |
| !! | AAGAAATGAAAAAGATTAAA+AGG | - | chr1.3:15318178-15318197 | None:intergenic | 15.0% |
| !! | ACCATATAGTAAAAATAATA+GGG | - | chr1.3:15318524-15318543 | None:intergenic | 15.0% |
| !! | AGAAATGAAAAAGATTAAAA+GGG | - | chr1.3:15318177-15318196 | None:intergenic | 15.0% |
| !! | TACCATATAGTAAAAATAAT+AGG | - | chr1.3:15318525-15318544 | None:intergenic | 15.0% |
| !! | TATATAATGTACTATGTATA+AGG | - | chr1.3:15319537-15319556 | None:intergenic | 15.0% |
| !!! | AAATTTAATCTTTTTGTGTA+TGG | + | chr1.3:15318216-15318235 | MS.gene93151:intron | 15.0% |
| !! | AAAAAATGAAGAAAATCACA+TGG | - | chr1.3:15318417-15318436 | None:intergenic | 20.0% |
| !! | AAAAATGAAGAAAATCACAT+GGG | - | chr1.3:15318416-15318435 | None:intergenic | 20.0% |
| !! | AAACATCAACATAAATAAGT+TGG | - | chr1.3:15319227-15319246 | None:intergenic | 20.0% |
| !! | AAAGAAATGAATGAATACAT+TGG | - | chr1.3:15318120-15318139 | None:intergenic | 20.0% |
| !! | ATACTTGTAACAATCATAAA+TGG | + | chr1.3:15318747-15318766 | MS.gene93151:CDS | 20.0% |
| !! | ATATTCTTCTTATGAATTCT+TGG | + | chr1.3:15318007-15318026 | MS.gene93151:intron | 20.0% |
| !! | TAAATAACCAAAACAGAAAA+AGG | - | chr1.3:15319399-15319418 | None:intergenic | 20.0% |
| !! | TATGAAATTAATCATCGAAA+CGG | + | chr1.3:15319193-15319212 | MS.gene93151:intron | 20.0% |
| !! | TGAAAACAATGATTAACAAA+AGG | - | chr1.3:15319427-15319446 | None:intergenic | 20.0% |
| !! | TGAAATTTAACATATGAACT+AGG | + | chr1.3:15319779-15319798 | MS.gene93151:intron | 20.0% |
| !! | TTCGATGATTAATTTCATAA+CGG | - | chr1.3:15319192-15319211 | None:intergenic | 20.0% |
| !! | TTGCAAAAATATTCAAAAAG+TGG | - | chr1.3:15318151-15318170 | None:intergenic | 20.0% |
| !!! | ACCCTATTATTTTTACTATA+TGG | + | chr1.3:15318520-15318539 | MS.gene93151:intron | 20.0% |
| !!! | GAAAATGTTCATTTAATTTC+TGG | + | chr1.3:15318640-15318659 | MS.gene93151:intron | 20.0% |
| !!! | GATATTGCACATTTTATATT+CGG | + | chr1.3:15317956-15317975 | MS.gene93151:CDS | 20.0% |
| !!! | TGAGACAATTAATTTTATAG+CGG | - | chr1.3:15319139-15319158 | None:intergenic | 20.0% |
| !!! | TTCTTAAAACTCAACTATTT+TGG | + | chr1.3:15319164-15319183 | MS.gene93151:intron | 20.0% |
| !!! | TTTTCATTTCTTGTTCTTTA+TGG | + | chr1.3:15318186-15318205 | MS.gene93151:intron | 20.0% |
| ! | AAATCAACAGAAAAATTCTC+TGG | + | chr1.3:15318311-15318330 | MS.gene93151:CDS | 25.0% |
| ! | AATACCATTTGCATTGTATT+TGG | + | chr1.3:15319829-15319848 | MS.gene93151:intron | 25.0% |
| ! | ACAATGTATTCATAAGACAT+AGG | + | chr1.3:15319103-15319122 | MS.gene93151:intron | 25.0% |
| ! | AGAGAAATACAAATAGTGAA+AGG | - | chr1.3:15319672-15319691 | None:intergenic | 25.0% |
| ! | ATATTGTATTTCATATACCG+TGG | + | chr1.3:15319937-15319956 | MS.gene93151:CDS | 25.0% |
| ! | ATGAAAATGATGCAAAACAA+AGG | - | chr1.3:15318472-15318491 | None:intergenic | 25.0% |
| ! | TGAAAATGATGCAAAACAAA+GGG | - | chr1.3:15318471-15318490 | None:intergenic | 25.0% |
| ! | TGGATTTAATAGGTCAAAAA+AGG | - | chr1.3:15319353-15319372 | None:intergenic | 25.0% |
| ! | TTTAAAAGTGAATGATCATG+TGG | - | chr1.3:15319464-15319483 | None:intergenic | 25.0% |
| !! | ACACATTCCTAAATGAATTT+TGG | - | chr1.3:15319514-15319533 | None:intergenic | 25.0% |
| !! | GAGTATATGTAACAATTTTC+AGG | + | chr1.3:15318694-15318713 | MS.gene93151:intron | 25.0% |
| !! | GTATTTTCAATCATCATGTA+TGG | + | chr1.3:15318954-15318973 | MS.gene93151:CDS | 25.0% |
| !!! | ATGTTTTAAACTGCTTTACA+AGG | + | chr1.3:15319241-15319260 | MS.gene93151:intron | 25.0% |
| !!! | CATTTTATATTCGGAGTATT+TGG | + | chr1.3:15317965-15317984 | MS.gene93151:CDS | 25.0% |
| !!! | GTGATTTTCTTCATTTTTTG+TGG | + | chr1.3:15318418-15318437 | MS.gene93151:intron | 25.0% |
| !!! | GTTGAGTTGAGTTTTAAATT+TGG | + | chr1.3:15318246-15318265 | MS.gene93151:intron | 25.0% |
| !!! | TATGTAACAATTTTCAGGTA+TGG | + | chr1.3:15318699-15318718 | MS.gene93151:intron | 25.0% |
| AAAAGAAGAAGCAATGGAAA+TGG | + | chr1.3:15319987-15320006 | MS.gene93151:CDS | 30.0% | |
| AAACTTACCATAATTGAGAG+TGG | - | chr1.3:15318984-15319003 | None:intergenic | 30.0% | |
| AAAGAAGAAGCAATGGAAAT+GGG | + | chr1.3:15319988-15320007 | MS.gene93151:CDS | 30.0% | |
| ACAAATAGTGAAAGGAAGAA+TGG | - | chr1.3:15319664-15319683 | None:intergenic | 30.0% | |
| AGGAATAATGAAATGACATG+TGG | + | chr1.3:15319799-15319818 | MS.gene93151:intron | 30.0% | |
| ATTGCCAAATACAATGCAAA+TGG | - | chr1.3:15319836-15319855 | None:intergenic | 30.0% | |
| ATTGTTACAAGTATGTTGTC+TGG | - | chr1.3:15318741-15318760 | None:intergenic | 30.0% | |
| GGAAAAAGATTTCATGCATT+AGG | - | chr1.3:15319332-15319351 | None:intergenic | 30.0% | |
| GTAACAATCATAAATGGAAC+AGG | + | chr1.3:15318753-15318772 | MS.gene93151:CDS | 30.0% | |
| TAAATTCCAACGACAAGATA+AGG | - | chr1.3:15319051-15319070 | None:intergenic | 30.0% | |
| TCACTATTTGTATTTCTCTG+TGG | + | chr1.3:15319673-15319692 | MS.gene93151:CDS | 30.0% | |
| TGAGTACTTACAGCAATAAA+GGG | - | chr1.3:15319736-15319755 | None:intergenic | 30.0% | |
| TGCAAACACTGTTATTACAA+AGG | - | chr1.3:15318862-15318881 | None:intergenic | 30.0% | |
| TTGAGTACTTACAGCAATAA+AGG | - | chr1.3:15319737-15319756 | None:intergenic | 30.0% | |
| TTTGTAGAATCACTTTCAAG+AGG | + | chr1.3:15318276-15318295 | MS.gene93151:intron | 30.0% | |
| ! | ACTTGCTAAATTGAATGTGA+TGG | - | chr1.3:15318596-15318615 | None:intergenic | 30.0% |
| ! | ATGATAGTGACAAAATGATG+AGG | + | chr1.3:15319854-15319873 | MS.gene93151:intron | 30.0% |
| ! | GTTTCTCATTTTCTTTCTTG+TGG | + | chr1.3:15318057-15318076 | MS.gene93151:intron | 30.0% |
| !! | CCTAAATGAATTTTGGTGTA+GGG | - | chr1.3:15319507-15319526 | None:intergenic | 30.0% |
| !! | TCCTAAATGAATTTTGGTGT+AGG | - | chr1.3:15319508-15319527 | None:intergenic | 30.0% |
| !!! | AATTCAAGGAAAGTGTTTTG+TGG | + | chr1.3:15318918-15318937 | MS.gene93151:CDS | 30.0% |
| !!! | TGGTTCATTTTTGGTCTATT+AGG | + | chr1.3:15319703-15319722 | MS.gene93151:CDS | 30.0% |
| AAGGAGAAGCTGAAAATAAG+TGG | + | chr1.3:15318828-15318847 | MS.gene93151:CDS | 35.0% | |
| AATTACCATGCAAAGCAAAC+AGG | - | chr1.3:15318902-15318921 | None:intergenic | 35.0% | |
| ACCAACAAAAGAAGAAGCAA+TGG | + | chr1.3:15319981-15320000 | MS.gene93151:CDS | 35.0% | |
| AGTGATCAAAACAAAGAGTG+TGG | + | chr1.3:15319630-15319649 | MS.gene93151:CDS | 35.0% | |
| ATTACCATGCAAAGCAAACA+GGG | - | chr1.3:15318901-15318920 | None:intergenic | 35.0% | |
| CAGAAAAAGGACAACAGAAA+AGG | - | chr1.3:15319386-15319405 | None:intergenic | 35.0% | |
| CCCTACACCAAAATTCATTT+AGG | + | chr1.3:15319504-15319523 | MS.gene93151:intron | 35.0% | |
| CTTGTGGATCTGGATTTAAT+AGG | - | chr1.3:15319363-15319382 | None:intergenic | 35.0% | |
| GAGTACTTACAGCAATAAAG+GGG | - | chr1.3:15319735-15319754 | None:intergenic | 35.0% | |
| TAGACCAAAAATGAACCATG+AGG | - | chr1.3:15319701-15319720 | None:intergenic | 35.0% | |
| TCAACTGTCTTCTTTCTTCT+TGG | + | chr1.3:15318357-15318376 | MS.gene93151:CDS | 35.0% | |
| TCATATACCGTGGCAATAAA+GGG | + | chr1.3:15319947-15319966 | MS.gene93151:CDS | 35.0% | |
| TTCATATACCGTGGCAATAA+AGG | + | chr1.3:15319946-15319965 | MS.gene93151:CDS | 35.0% | |
| TTGCTTTGCATGGTAATTCA+AGG | + | chr1.3:15318904-15318923 | MS.gene93151:CDS | 35.0% | |
| ! | ATTTTCAGCTTCTCCTTCTT+AGG | - | chr1.3:15318825-15318844 | None:intergenic | 35.0% |
| ! | CTGTTGTCCTTTTTCTGTTT+TGG | + | chr1.3:15319389-15319408 | MS.gene93151:intron | 35.0% |
| ! | TCCATTGCTTCTTCTTTTGT+TGG | - | chr1.3:15319985-15320004 | None:intergenic | 35.0% |
| ! | TGTGATTTGTAGGTACCAAA+TGG | + | chr1.3:15319883-15319902 | MS.gene93151:intron | 35.0% |
| !! | GAGGCAATTTTGTGATTTGT+AGG | + | chr1.3:15319873-15319892 | MS.gene93151:intron | 35.0% |
| !! | TTTTGGCCTTTTTCTCTTCT+TGG | + | chr1.3:15318092-15318111 | MS.gene93151:CDS | 35.0% |
| AAAAATGACCCCACTCCATT+TGG | - | chr1.3:15319901-15319920 | None:intergenic | 40.0% | |
| ATGTTGTCTGGTGACACAAA+TGG | - | chr1.3:15318729-15318748 | None:intergenic | 40.0% | |
| ATTTCCCTGTTTGCTTTGCA+TGG | + | chr1.3:15318894-15318913 | MS.gene93151:CDS | 40.0% | |
| CATAGTGTTTGCACCTAAGA+AGG | + | chr1.3:15318809-15318828 | MS.gene93151:CDS | 40.0% | |
| CCAACGACAAGATAAGGATA+AGG | - | chr1.3:15319045-15319064 | None:intergenic | 40.0% | |
| CCTTATCCTTATCTTGTCGT+TGG | + | chr1.3:15319042-15319061 | MS.gene93151:intron | 40.0% | |
| TATTTCTCTGTGGTACCTCA+TGG | + | chr1.3:15319683-15319702 | MS.gene93151:CDS | 40.0% | |
| TGGTTCACCACTCTCAATTA+TGG | + | chr1.3:15318974-15318993 | MS.gene93151:CDS | 40.0% | |
| TTACAGCAATAAAGGGGTCA+CGG | - | chr1.3:15319729-15319748 | None:intergenic | 40.0% | |
| TTGCATTCCCTTTATTGCCA+CGG | - | chr1.3:15319957-15319976 | None:intergenic | 40.0% | |
| TTGGAGCCAAGAAGAGAAAA+AGG | - | chr1.3:15318101-15318120 | None:intergenic | 40.0% | |
| TTGTAGGTACCAAATGGAGT+GGG | + | chr1.3:15319889-15319908 | MS.gene93151:intron | 40.0% | |
| TTTGTAGGTACCAAATGGAG+TGG | + | chr1.3:15319888-15319907 | MS.gene93151:intron | 40.0% | |
| ! | CATTTTCTTTCTTGTGGTGC+AGG | + | chr1.3:15318063-15318082 | MS.gene93151:intron | 40.0% |
| ! | GGTACCTCATGGTTCATTTT+TGG | + | chr1.3:15319694-15319713 | MS.gene93151:CDS | 40.0% |
| !! | AGACAGTTGAGAAGTGTCAT+AGG | - | chr1.3:15318347-15318366 | None:intergenic | 40.0% |
| !! | GACAGTTGAGAAGTGTCATA+GGG | - | chr1.3:15318346-15318365 | None:intergenic | 40.0% |
| !! | TTGAGAAGTGTCATAGGGTA+AGG | - | chr1.3:15318341-15318360 | None:intergenic | 40.0% |
| !!! | AATGGAGTGGGGTCATTTTT+AGG | + | chr1.3:15319901-15319920 | MS.gene93151:CDS | 40.0% |
| !!! | ATGGAGTGGGGTCATTTTTA+GGG | + | chr1.3:15319902-15319921 | MS.gene93151:CDS | 40.0% |
| ACAGAAAAGGCTTGTGGATC+TGG | - | chr1.3:15319373-15319392 | None:intergenic | 45.0% | |
| ACTGCAAAACCAATGGGAGA+AGG | + | chr1.3:15320012-15320031 | MS.gene93151:CDS | 45.0% | |
| AGGACAACAGAAAAGGCTTG+TGG | - | chr1.3:15319379-15319398 | None:intergenic | 45.0% | |
| CTGCAAAACCAATGGGAGAA+GGG | + | chr1.3:15320013-15320032 | MS.gene93151:CDS | 45.0% | |
| TGCAAAACCAATGGGAGAAG+GGG | + | chr1.3:15320014-15320033 | MS.gene93151:CDS | 45.0% | |
| TGTAGGTACCAAATGGAGTG+GGG | + | chr1.3:15319890-15319909 | MS.gene93151:intron | 45.0% | |
| ! | AATGGGCACTGCAAAACCAA+TGG | + | chr1.3:15320005-15320024 | MS.gene93151:CDS | 45.0% |
| ! | ATGGGCACTGCAAAACCAAT+GGG | + | chr1.3:15320006-15320025 | MS.gene93151:CDS | 45.0% |
| ! | TGTGGTGCAGGAAATGCTTT+TGG | + | chr1.3:15318075-15318094 | MS.gene93151:intron | 45.0% |
| ATGGGAGAAGGGGAACTCAA+AGG | + | chr1.3:15320024-15320043 | MS.gene93151:CDS | 50.0% | |
| TGGGAGAAGGGGAACTCAAA+GGG | + | chr1.3:15320025-15320044 | MS.gene93151:CDS | 50.0% | |
| TTGAGTTCCCCTTCTCCCAT+TGG | - | chr1.3:15320024-15320043 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 15317953 | 15320059 | 15317953 | ID=MS.gene93151 |
| chr1.3 | mRNA | 15317953 | 15320059 | 15317953 | ID=MS.gene93151.t1;Parent=MS.gene93151 |
| chr1.3 | exon | 15317953 | 15317986 | 15317953 | ID=MS.gene93151.t1.exon1;Parent=MS.gene93151.t1 |
| chr1.3 | CDS | 15317953 | 15317986 | 15317953 | ID=cds.MS.gene93151.t1;Parent=MS.gene93151.t1 |
| chr1.3 | exon | 15318085 | 15318121 | 15318085 | ID=MS.gene93151.t1.exon2;Parent=MS.gene93151.t1 |
| chr1.3 | CDS | 15318085 | 15318121 | 15318085 | ID=cds.MS.gene93151.t1;Parent=MS.gene93151.t1 |
| chr1.3 | exon | 15318283 | 15318378 | 15318283 | ID=MS.gene93151.t1.exon3;Parent=MS.gene93151.t1 |
| chr1.3 | CDS | 15318283 | 15318378 | 15318283 | ID=cds.MS.gene93151.t1;Parent=MS.gene93151.t1 |
| chr1.3 | exon | 15318716 | 15318995 | 15318716 | ID=MS.gene93151.t1.exon4;Parent=MS.gene93151.t1 |
| chr1.3 | CDS | 15318716 | 15318995 | 15318716 | ID=cds.MS.gene93151.t1;Parent=MS.gene93151.t1 |
| chr1.3 | exon | 15319625 | 15319744 | 15319625 | ID=MS.gene93151.t1.exon5;Parent=MS.gene93151.t1 |
| chr1.3 | CDS | 15319625 | 15319744 | 15319625 | ID=cds.MS.gene93151.t1;Parent=MS.gene93151.t1 |
| chr1.3 | exon | 15319895 | 15320059 | 15319895 | ID=MS.gene93151.t1.exon6;Parent=MS.gene93151.t1 |
| chr1.3 | CDS | 15319895 | 15320059 | 15319895 | ID=cds.MS.gene93151.t1;Parent=MS.gene93151.t1 |
| Gene Sequence |
| Protein sequence |
