Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02493.t1 | XP_013461374.1 | 95.5 | 247 | 11 | 0 | 1 | 247 | 1 | 247 | 1.20E-123 | 452.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02493.t1 | Q8L9J7 | 75.2 | 214 | 53 | 0 | 1 | 214 | 1 | 214 | 2.6e-87 | 323.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02493.t1 | A0A072V086 | 95.5 | 247 | 11 | 0 | 1 | 247 | 1 | 247 | 8.5e-124 | 452.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene00279 | MS.gene02493 | PPI |
| MS.gene90281 | MS.gene02493 | PPI |
| MS.gene79032 | MS.gene02493 | PPI |
| MS.gene69746 | MS.gene02493 | PPI |
| MS.gene02493 | MS.gene52388 | PPI |
| MS.gene02493 | MS.gene25769 | PPI |
| MS.gene68896 | MS.gene02493 | PPI |
| MS.gene54644 | MS.gene02493 | PPI |
| MS.gene57091 | MS.gene02493 | PPI |
| MS.gene02493 | MS.gene79036 | PPI |
| MS.gene02493 | MS.gene026934 | PPI |
| MS.gene02493 | MS.gene54643 | PPI |
| MS.gene026933 | MS.gene02493 | PPI |
| MS.gene02493 | MS.gene026939 | PPI |
| MS.gene79035 | MS.gene02493 | PPI |
| MS.gene026935 | MS.gene02493 | PPI |
| MS.gene54672 | MS.gene02493 | PPI |
| MS.gene55828 | MS.gene02493 | PPI |
| MS.gene02493 | MS.gene026937 | PPI |
| MS.gene02493 | MS.gene70529 | PPI |
| MS.gene02493 | MS.gene46188 | PPI |
| MS.gene02493 | MS.gene048962 | PPI |
| MS.gene044269 | MS.gene02493 | PPI |
| MS.gene02493 | MS.gene004537 | PPI |
| MS.gene54638 | MS.gene02493 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02493.t1 | MTR_3g089125 | 95.547 | 247 | 11 | 0 | 1 | 247 | 1 | 247 | 4.14e-171 | 471 |
| MS.gene02493.t1 | MTR_1g029380 | 79.399 | 233 | 47 | 1 | 1 | 233 | 1 | 232 | 3.56e-132 | 373 |
| MS.gene02493.t1 | MTR_3g090940 | 45.690 | 232 | 122 | 3 | 2 | 229 | 3 | 234 | 4.94e-63 | 197 |
| MS.gene02493.t1 | MTR_8g042490 | 45.972 | 211 | 114 | 0 | 9 | 219 | 18 | 228 | 2.23e-61 | 193 |
| MS.gene02493.t1 | MTR_3g090950 | 45.852 | 229 | 120 | 3 | 5 | 229 | 6 | 234 | 6.18e-61 | 192 |
| MS.gene02493.t1 | MTR_1g028460 | 46.512 | 215 | 112 | 2 | 2 | 213 | 3 | 217 | 4.48e-58 | 185 |
| MS.gene02493.t1 | MTR_2g073190 | 45.495 | 222 | 121 | 0 | 2 | 223 | 11 | 232 | 6.66e-58 | 195 |
| MS.gene02493.t1 | MTR_3g080990 | 43.750 | 240 | 125 | 3 | 2 | 240 | 5 | 235 | 3.11e-57 | 183 |
| MS.gene02493.t1 | MTR_6g007633 | 43.379 | 219 | 118 | 4 | 9 | 221 | 12 | 230 | 1.76e-53 | 172 |
| MS.gene02493.t1 | MTR_8g099730 | 38.017 | 242 | 143 | 3 | 3 | 238 | 16 | 256 | 4.39e-52 | 170 |
| MS.gene02493.t1 | MTR_7g007490 | 40.948 | 232 | 131 | 4 | 6 | 234 | 11 | 239 | 2.57e-50 | 165 |
| MS.gene02493.t1 | MTR_5g092600 | 41.202 | 233 | 127 | 5 | 6 | 233 | 11 | 238 | 2.47e-49 | 162 |
| MS.gene02493.t1 | MTR_6g007623 | 42.534 | 221 | 120 | 4 | 9 | 222 | 9 | 229 | 1.76e-48 | 160 |
| MS.gene02493.t1 | MTR_2g436310 | 44.037 | 218 | 117 | 3 | 9 | 224 | 9 | 223 | 5.47e-48 | 159 |
| MS.gene02493.t1 | MTR_6g007637 | 42.791 | 215 | 119 | 4 | 2 | 213 | 6 | 219 | 8.66e-47 | 156 |
| MS.gene02493.t1 | MTR_5g067530 | 39.189 | 222 | 126 | 4 | 2 | 220 | 7 | 222 | 3.56e-44 | 150 |
| MS.gene02493.t1 | MTR_8g096310 | 34.498 | 229 | 144 | 3 | 2 | 227 | 6 | 231 | 9.97e-43 | 146 |
| MS.gene02493.t1 | MTR_3g098910 | 36.574 | 216 | 133 | 3 | 8 | 221 | 12 | 225 | 5.93e-42 | 145 |
| MS.gene02493.t1 | MTR_4g106990 | 41.624 | 197 | 114 | 1 | 26 | 221 | 36 | 232 | 2.38e-40 | 139 |
| MS.gene02493.t1 | MTR_8g096320 | 35.683 | 227 | 140 | 4 | 7 | 231 | 11 | 233 | 3.20e-40 | 139 |
| MS.gene02493.t1 | MTR_2g007890 | 37.443 | 219 | 128 | 4 | 8 | 222 | 15 | 228 | 5.24e-39 | 137 |
| MS.gene02493.t1 | MTR_7g405730 | 39.512 | 205 | 121 | 2 | 8 | 211 | 12 | 214 | 5.27e-38 | 134 |
| MS.gene02493.t1 | MTR_8g099730 | 36.702 | 188 | 112 | 3 | 57 | 238 | 6 | 192 | 1.56e-37 | 130 |
| MS.gene02493.t1 | MTR_7g405710 | 36.667 | 240 | 145 | 4 | 8 | 242 | 12 | 249 | 3.36e-37 | 132 |
| MS.gene02493.t1 | MTR_3g098930 | 36.957 | 184 | 115 | 1 | 7 | 190 | 12 | 194 | 3.56e-33 | 119 |
| MS.gene02493.t1 | MTR_6g007610 | 35.193 | 233 | 129 | 6 | 9 | 226 | 12 | 237 | 1.30e-30 | 114 |
| MS.gene02493.t1 | MTR_8g096320 | 35.802 | 162 | 101 | 2 | 71 | 231 | 19 | 178 | 2.38e-29 | 109 |
| MS.gene02493.t1 | MTR_6g034600 | 41.489 | 94 | 51 | 1 | 106 | 199 | 3 | 92 | 5.43e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02493.t1 | AT1G21460 | 68.293 | 246 | 78 | 0 | 1 | 246 | 1 | 246 | 3.89e-123 | 350 |
| MS.gene02493.t1 | AT1G21460 | 75.789 | 190 | 46 | 0 | 1 | 190 | 1 | 190 | 1.51e-102 | 296 |
| MS.gene02493.t1 | AT5G53190 | 44.255 | 235 | 128 | 2 | 2 | 233 | 3 | 237 | 9.25e-65 | 202 |
| MS.gene02493.t1 | AT3G14770 | 45.815 | 227 | 111 | 2 | 2 | 228 | 15 | 229 | 4.29e-55 | 177 |
| MS.gene02493.t1 | AT4G15920 | 43.348 | 233 | 124 | 5 | 1 | 228 | 1 | 230 | 3.13e-54 | 175 |
| MS.gene02493.t1 | AT5G62850 | 40.435 | 230 | 132 | 3 | 4 | 230 | 7 | 234 | 1.43e-53 | 173 |
| MS.gene02493.t1 | AT1G66770 | 41.631 | 233 | 127 | 4 | 1 | 230 | 6 | 232 | 2.16e-52 | 171 |
| MS.gene02493.t1 | AT4G10850 | 43.043 | 230 | 120 | 5 | 1 | 219 | 1 | 230 | 1.00e-51 | 169 |
| MS.gene02493.t1 | AT3G16690 | 43.256 | 215 | 114 | 4 | 9 | 219 | 9 | 219 | 2.29e-50 | 164 |
| MS.gene02493.t1 | AT3G16690 | 42.857 | 224 | 118 | 5 | 2 | 219 | 35 | 254 | 3.35e-50 | 165 |
| MS.gene02493.t1 | AT3G28007 | 46.667 | 210 | 109 | 3 | 2 | 209 | 5 | 213 | 3.91e-49 | 162 |
| MS.gene02493.t1 | AT5G40260 | 38.496 | 226 | 133 | 5 | 5 | 225 | 8 | 232 | 1.61e-45 | 152 |
| MS.gene02493.t1 | AT5G50800 | 37.021 | 235 | 140 | 3 | 7 | 240 | 11 | 238 | 9.27e-45 | 152 |
| MS.gene02493.t1 | AT4G25010 | 38.462 | 234 | 137 | 4 | 2 | 229 | 6 | 238 | 1.75e-44 | 151 |
| MS.gene02493.t1 | AT5G50790 | 40.291 | 206 | 118 | 3 | 7 | 210 | 11 | 213 | 1.97e-44 | 151 |
| MS.gene02493.t1 | AT5G62850 | 42.105 | 190 | 105 | 3 | 4 | 190 | 7 | 194 | 3.23e-43 | 145 |
| MS.gene02493.t1 | AT5G13170 | 35.470 | 234 | 136 | 5 | 7 | 238 | 13 | 233 | 2.77e-41 | 143 |
| MS.gene02493.t1 | AT5G23660 | 38.261 | 230 | 133 | 3 | 7 | 229 | 13 | 240 | 1.15e-40 | 141 |
| MS.gene02493.t1 | AT2G39060 | 37.273 | 220 | 132 | 3 | 7 | 225 | 11 | 225 | 1.46e-40 | 140 |
| MS.gene02493.t1 | AT3G48740 | 36.325 | 234 | 145 | 3 | 7 | 239 | 13 | 243 | 6.25e-39 | 137 |
| MS.gene02493.t1 | AT5G40260 | 39.378 | 193 | 111 | 5 | 7 | 194 | 10 | 201 | 6.09e-37 | 129 |
| MS.gene02493.t1 | AT3G16690 | 41.958 | 143 | 75 | 4 | 9 | 147 | 9 | 147 | 6.32e-24 | 95.5 |
Find 59 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGCTTTGTTCCTCTTCT+TGG | 0.090747 | 3.4:+82516946 | MS.gene02493:CDS |
| TAATGGTCTTGGTTCTGTTT+TGG | 0.179490 | 3.4:+82518550 | MS.gene02493:CDS |
| TCCATTGATTCCTCTTCTAT+TGG | 0.234330 | 3.4:-82518638 | None:intergenic |
| CATAAGATAGTTTCATTTGA+TGG | 0.253533 | 3.4:-82518679 | None:intergenic |
| TGTTTCTTTGCGGCACTTCA+TGG | 0.258501 | 3.4:+82518381 | MS.gene02493:CDS |
| TGGTTCTCCACTCTCAATTA+TGG | 0.317369 | 3.4:+82518115 | MS.gene02493:CDS |
| CATCAAATGAAACTATCTTA+TGG | 0.321106 | 3.4:+82518680 | MS.gene02493:CDS |
| ATACCGGTAACAACAGTAAA+TGG | 0.331981 | 3.4:+82517888 | MS.gene02493:CDS |
| GGCACTTCATGGTTTATATT+CGG | 0.336382 | 3.4:+82518392 | MS.gene02493:CDS |
| GTCTCCCTCTTTGCCTTCCA+TGG | 0.339060 | 3.4:+82518035 | MS.gene02493:CDS |
| CAGAGAGTACCAAGGTGAAT+AGG | 0.345094 | 3.4:-82517992 | None:intergenic |
| GTGCCATTTACTGTTGTTAC+CGG | 0.352062 | 3.4:-82517891 | None:intergenic |
| TTGCCTTCCATGGCAATCAT+AGG | 0.381587 | 3.4:+82518045 | MS.gene02493:CDS |
| CATCATATTTGCACCTAAGA+AGG | 0.399786 | 3.4:+82517950 | MS.gene02493:CDS |
| TCGCTGTTTGTGTTTCTTTG+CGG | 0.403722 | 3.4:+82518371 | MS.gene02493:CDS |
| TTTCAGGTACCTAATGGTCT+TGG | 0.407841 | 3.4:+82518539 | MS.gene02493:intron |
| ACAGTAAATGGCACCGGAGC+AGG | 0.416818 | 3.4:+82517900 | MS.gene02493:CDS |
| AAAACAGAACCAAGACCATT+AGG | 0.423220 | 3.4:-82518548 | None:intergenic |
| AGAGAGTACCAAGGTGAATA+GGG | 0.429404 | 3.4:-82517991 | None:intergenic |
| TCAATTGTCTCCTTTCTGCT+TGG | 0.435363 | 3.4:+82517361 | MS.gene02493:CDS |
| GGCCTTCTGCGGCTTTGCCA+TGG | 0.453114 | 3.4:+82518070 | MS.gene02493:CDS |
| TCTTATGGAAATGAAATTCA+AGG | 0.455334 | 3.4:+82518695 | MS.gene02493:CDS |
| TTGAGCAGTGTCATAACATA+TGG | 0.464848 | 3.4:-82517342 | None:intergenic |
| TGGCATGAACTCCACACTCT+TGG | 0.469786 | 3.4:-82518339 | None:intergenic |
| TGTTGTTACCGGTATGTTGT+TGG | 0.472054 | 3.4:-82517880 | None:intergenic |
| ACTAACTTACAGCAACAAAT+AGG | 0.474521 | 3.4:-82518430 | None:intergenic |
| GTTGTTACCGGTATGTTGTT+GGG | 0.478397 | 3.4:-82517879 | None:intergenic |
| GAATCAATGGAGATGGGTAA+TGG | 0.480093 | 3.4:+82518650 | MS.gene02493:CDS |
| TGGTTTATATTCGGTCTGCT+AGG | 0.491078 | 3.4:+82518401 | MS.gene02493:CDS |
| AGAAGAGGAATCAATGGAGA+TGG | 0.498039 | 3.4:+82518643 | MS.gene02493:CDS |
| TTGAAATACCTTTGTTGTCA+CGG | 0.503687 | 3.4:-82518604 | None:intergenic |
| TATGATTTCAATCCCTGCTC+CGG | 0.531246 | 3.4:-82517913 | None:intergenic |
| GAAGAGGAATCAATGGAGAT+GGG | 0.533130 | 3.4:+82518644 | MS.gene02493:CDS |
| ACAAACAGCGACAAGAAGAA+TGG | 0.536626 | 3.4:-82518359 | None:intergenic |
| ACCAATAGAAGAGGAATCAA+TGG | 0.540561 | 3.4:+82518637 | MS.gene02493:CDS |
| AGCTAGCTCACCAAGCAGAA+AGG | 0.551179 | 3.4:-82517371 | None:intergenic |
| TGTATAGGATTACATTCAAG+AGG | 0.558431 | 3.4:+82517280 | MS.gene02493:intron |
| AGCCATGGCAAAGCCGCAGA+AGG | 0.563128 | 3.4:-82518072 | None:intergenic |
| AATCTTTGCCCTATTCACCT+TGG | 0.568689 | 3.4:+82517983 | MS.gene02493:CDS |
| TGTGTCTCCCAACAACATAC+CGG | 0.568736 | 3.4:+82517872 | MS.gene02493:CDS |
| AGGCCTTCCTATGATTGCCA+TGG | 0.573899 | 3.4:-82518052 | None:intergenic |
| CTTCCTATGATTGCCATGGA+AGG | 0.577952 | 3.4:-82518048 | None:intergenic |
| CATACACAGGTGCCAAGAAG+AGG | 0.580321 | 3.4:-82516958 | None:intergenic |
| CAGTAAATGGCACCGGAGCA+GGG | 0.585691 | 3.4:+82517901 | MS.gene02493:CDS |
| TGGCTTACCATAATTGAGAG+TGG | 0.590723 | 3.4:-82518122 | None:intergenic |
| AAATCAGGCACCAATAGAAG+AGG | 0.597578 | 3.4:+82518628 | MS.gene02493:CDS |
| ATTGCCATGGAAGGCAAAGA+GGG | 0.598863 | 3.4:-82518039 | None:intergenic |
| GATTGCCATGGAAGGCAAAG+AGG | 0.600562 | 3.4:-82518040 | None:intergenic |
| GTAACAACAGTAAATGGCAC+CGG | 0.604393 | 3.4:+82517894 | MS.gene02493:CDS |
| ATGTTGTTGGGAGACACAAA+AGG | 0.620611 | 3.4:-82517867 | None:intergenic |
| CTTCCATGGCAATCATAGGA+AGG | 0.627717 | 3.4:+82518049 | MS.gene02493:CDS |
| TTCATATACCGTGACAACAA+AGG | 0.632876 | 3.4:+82518596 | MS.gene02493:CDS |
| AGTGATCAAAACCAAGAGTG+TGG | 0.637618 | 3.4:+82518328 | MS.gene02493:CDS |
| TGGAGAACCATACATGATGA+CGG | 0.640731 | 3.4:-82518102 | None:intergenic |
| TTACAGCAACAAATAGGTCA+CGG | 0.656357 | 3.4:-82518424 | None:intergenic |
| GATGACGGAAAATATAGCCA+TGG | 0.659780 | 3.4:-82518087 | None:intergenic |
| AATCATAGGAAGGCCTTCTG+CGG | 0.681842 | 3.4:+82518059 | MS.gene02493:CDS |
| TATGCCTGAAAATTTCTCTG+TGG | 0.709244 | 3.4:-82517319 | None:intergenic |
| AGAGAACACAGAGAGTACCA+AGG | 0.729090 | 3.4:-82518000 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACTTAAATATATTTATAAG+TGG | - | chr3.4:82517189-82517208 | None:intergenic | 15.0% |
| !! | AATTTCAAATCCACAATAAA+TGG | - | chr3.4:82518295-82518314 | None:intergenic | 20.0% |
| !! | CTAGTATATGTCATTAATAT+TGG | - | chr3.4:82518236-82518255 | None:intergenic | 20.0% |
| !! | GGTCTTAAATATAAGTAAAA+AGG | + | chr3.4:82518459-82518478 | MS.gene02493:intron | 20.0% |
| !! | TTAAAAGCAAAAATATACCA+AGG | - | chr3.4:82517715-82517734 | None:intergenic | 20.0% |
| !! | TTTAATTGGAATATTTCGAA+AGG | + | chr3.4:82517749-82517768 | MS.gene02493:intron | 20.0% |
| !!! | AACATTTTACCATACAAAAT+TGG | - | chr3.4:82517473-82517492 | None:intergenic | 20.0% |
| !!! | CAGAATTTTTTTTTACAACA+AGG | - | chr3.4:82516889-82516908 | None:intergenic | 20.0% |
| !!! | CTCTTTTCTTATTTATTTTC+TGG | + | chr3.4:82517077-82517096 | MS.gene02493:intron | 20.0% |
| ! | AATCCTATACAAAACTCAAT+TGG | - | chr3.4:82517271-82517290 | None:intergenic | 25.0% |
| ! | AATTATGGTAAGCCAATTTA+CGG | + | chr3.4:82518130-82518149 | MS.gene02493:intron | 25.0% |
| ! | CATAAGATAGTTTCATTTGA+TGG | - | chr3.4:82518682-82518701 | None:intergenic | 25.0% |
| ! | CATCAAATGAAACTATCTTA+TGG | + | chr3.4:82518680-82518699 | MS.gene02493:CDS | 25.0% |
| ! | TCTTATGGAAATGAAATTCA+AGG | + | chr3.4:82518695-82518714 | MS.gene02493:CDS | 25.0% |
| !! | TATGGTAAAATGTTGCTATT+TGG | + | chr3.4:82517479-82517498 | MS.gene02493:intron | 25.0% |
| !! | TTTTACCATACAAAATTGGA+AGG | - | chr3.4:82517469-82517488 | None:intergenic | 25.0% |
| !!! | AGGGAATTTTATTACTTTTC+AGG | + | chr3.4:82518523-82518542 | MS.gene02493:intron | 25.0% |
| !!! | ATTTTGATCTTTTCCTTCTT+AGG | - | chr3.4:82517966-82517985 | None:intergenic | 25.0% |
| !!! | CAAAGGTATTTCAAAAAATC+AGG | + | chr3.4:82518613-82518632 | MS.gene02493:CDS | 25.0% |
| !!! | GTTTTATTTAATGTGAGACT+TGG | + | chr3.4:82517212-82517231 | MS.gene02493:intron | 25.0% |
| !!! | TATTGGACTTCTGAAAATTT+TGG | - | chr3.4:82518219-82518238 | None:intergenic | 25.0% |
| !!! | TCTTATTTATTTTCTGGTTC+CGG | + | chr3.4:82517083-82517102 | MS.gene02493:intron | 25.0% |
| !!! | TTAGTGCATTCAGTTTTAAT+TGG | + | chr3.4:82517735-82517754 | MS.gene02493:intron | 25.0% |
| ACTAACTTACAGCAACAAAT+AGG | - | chr3.4:82518433-82518452 | None:intergenic | 30.0% | |
| AGAAGTTAATTACACCATGA+TGG | - | chr3.4:82517528-82517547 | None:intergenic | 30.0% | |
| CAAGAACAAACTCATTGTAA+GGG | + | chr3.4:82518504-82518523 | MS.gene02493:intron | 30.0% | |
| CTTTAATAGGAACAAAACCT+TGG | + | chr3.4:82517695-82517714 | MS.gene02493:intron | 30.0% | |
| TCAAGAACAAACTCATTGTA+AGG | + | chr3.4:82518503-82518522 | MS.gene02493:intron | 30.0% | |
| TGAACATGACTGTCTTTAAT+AGG | + | chr3.4:82517682-82517701 | MS.gene02493:intron | 30.0% | |
| TGTATAGGATTACATTCAAG+AGG | + | chr3.4:82517280-82517299 | MS.gene02493:intron | 30.0% | |
| ! | AAATCCACAGAGAAATTTTC+AGG | + | chr3.4:82517315-82517334 | MS.gene02493:CDS | 30.0% |
| ! | ATATTTTCCGTCATCATGTA+TGG | + | chr3.4:82518095-82518114 | MS.gene02493:CDS | 30.0% |
| ! | CTTTTATGGTTAAACCTTAG+AGG | + | chr3.4:82517593-82517612 | MS.gene02493:intron | 30.0% |
| ! | TACATGCATAGCATCTTTTA+TGG | + | chr3.4:82517579-82517598 | MS.gene02493:intron | 30.0% |
| ! | TACTTATATTTAAGACCGAG+TGG | - | chr3.4:82518456-82518475 | None:intergenic | 30.0% |
| ! | TTGAAATACCTTTGTTGTCA+CGG | - | chr3.4:82518607-82518626 | None:intergenic | 30.0% |
| !! | CATCTTTTGTTTGGCATATT+TGG | + | chr3.4:82516823-82516842 | MS.gene02493:CDS | 30.0% |
| !! | TGACCAATTGAGTTTTGTAT+AGG | + | chr3.4:82517265-82517284 | MS.gene02493:intron | 30.0% |
| !! | TTTTGTTTGGCATATTTGGT+AGG | + | chr3.4:82516827-82516846 | MS.gene02493:intron | 30.0% |
| !!! | AAATGGCATGTTTTGGAATT+TGG | - | chr3.4:82518278-82518297 | None:intergenic | 30.0% |
| !!! | ATTACTTTTCAGGTACCTAA+TGG | + | chr3.4:82518533-82518552 | MS.gene02493:intron | 30.0% |
| AAAACAGAACCAAGACCATT+AGG | - | chr3.4:82518551-82518570 | None:intergenic | 35.0% | |
| AAAATCGTTGTGCCGTAAAT+TGG | - | chr3.4:82518145-82518164 | None:intergenic | 35.0% | |
| ACCAATAGAAGAGGAATCAA+TGG | + | chr3.4:82518637-82518656 | MS.gene02493:CDS | 35.0% | |
| ACTTGACACAAGATTTAGTG+GGG | - | chr3.4:82517432-82517451 | None:intergenic | 35.0% | |
| ATACCGGTAACAACAGTAAA+TGG | + | chr3.4:82517888-82517907 | MS.gene02493:CDS | 35.0% | |
| CATCATATTTGCACCTAAGA+AGG | + | chr3.4:82517950-82517969 | MS.gene02493:CDS | 35.0% | |
| GACTTGACACAAGATTTAGT+GGG | - | chr3.4:82517433-82517452 | None:intergenic | 35.0% | |
| GGCACTTCATGGTTTATATT+CGG | + | chr3.4:82518392-82518411 | MS.gene02493:CDS | 35.0% | |
| TAACATAGTAGTACTAGAGC+CGG | - | chr3.4:82517105-82517124 | None:intergenic | 35.0% | |
| TATGCCTGAAAATTTCTCTG+TGG | - | chr3.4:82517322-82517341 | None:intergenic | 35.0% | |
| TGACTTGACACAAGATTTAG+TGG | - | chr3.4:82517434-82517453 | None:intergenic | 35.0% | |
| TTACAGCAACAAATAGGTCA+CGG | - | chr3.4:82518427-82518446 | None:intergenic | 35.0% | |
| TTCATATACCGTGACAACAA+AGG | + | chr3.4:82518596-82518615 | MS.gene02493:CDS | 35.0% | |
| TTGAGCAGTGTCATAACATA+TGG | - | chr3.4:82517345-82517364 | None:intergenic | 35.0% | |
| ! | ATTTATAAGTGGTGACGAGT+TGG | - | chr3.4:82517178-82517197 | None:intergenic | 35.0% |
| ! | CCAAAACATGCCATTTATTG+TGG | + | chr3.4:82518282-82518301 | MS.gene02493:intron | 35.0% |
| ! | CCACAATAAATGGCATGTTT+TGG | - | chr3.4:82518285-82518304 | None:intergenic | 35.0% |
| ! | GATGTTGCACATCTTTTGTT+TGG | + | chr3.4:82516814-82516833 | MS.gene02493:CDS | 35.0% |
| ! | TGCTTCCTTCCAATTTTGTA+TGG | + | chr3.4:82517461-82517480 | MS.gene02493:intron | 35.0% |
| !! | TCCATTGATTCCTCTTCTAT+TGG | - | chr3.4:82518641-82518660 | None:intergenic | 35.0% |
| !! | TCTTAAATTAGAAGTGTCCG+TGG | - | chr3.4:82517026-82517045 | None:intergenic | 35.0% |
| !!! | AATGGTCTTGGTTCTGTTTT+GGG | + | chr3.4:82518551-82518570 | MS.gene02493:CDS | 35.0% |
| !!! | TAATGGTCTTGGTTCTGTTT+TGG | + | chr3.4:82518550-82518569 | MS.gene02493:CDS | 35.0% |
| AAATCAGGCACCAATAGAAG+AGG | + | chr3.4:82518628-82518647 | MS.gene02493:CDS | 40.0% | |
| AATCTTTGCCCTATTCACCT+TGG | + | chr3.4:82517983-82518002 | MS.gene02493:CDS | 40.0% | |
| ACAAACAGCGACAAGAAGAA+TGG | - | chr3.4:82518362-82518381 | None:intergenic | 40.0% | |
| AGAAGAGGAATCAATGGAGA+TGG | + | chr3.4:82518643-82518662 | MS.gene02493:CDS | 40.0% | |
| AGTGATCAAAACCAAGAGTG+TGG | + | chr3.4:82518328-82518347 | MS.gene02493:CDS | 40.0% | |
| ATGTTGTTGGGAGACACAAA+AGG | - | chr3.4:82517870-82517889 | None:intergenic | 40.0% | |
| CAGCCAAGTAATACATACAC+AGG | - | chr3.4:82516974-82516993 | None:intergenic | 40.0% | |
| GAAGAGGAATCAATGGAGAT+GGG | + | chr3.4:82518644-82518663 | MS.gene02493:CDS | 40.0% | |
| GAAGCAAAAGGAGAAACAGT+TGG | - | chr3.4:82517506-82517525 | None:intergenic | 40.0% | |
| GAATCAATGGAGATGGGTAA+TGG | + | chr3.4:82518650-82518669 | MS.gene02493:CDS | 40.0% | |
| GCAATGTGGTGAATTTAGGT+TGG | + | chr3.4:82517619-82517638 | MS.gene02493:intron | 40.0% | |
| GCACCTGTGTATGTATTACT+TGG | + | chr3.4:82516968-82516987 | MS.gene02493:intron | 40.0% | |
| GCATGCAATGTGGTGAATTT+AGG | + | chr3.4:82517615-82517634 | MS.gene02493:intron | 40.0% | |
| GTAACAACAGTAAATGGCAC+CGG | + | chr3.4:82517894-82517913 | MS.gene02493:CDS | 40.0% | |
| GTTGTTACCGGTATGTTGTT+GGG | - | chr3.4:82517882-82517901 | None:intergenic | 40.0% | |
| TATGATTTCAATCCCTGCTC+CGG | - | chr3.4:82517916-82517935 | None:intergenic | 40.0% | |
| TCAATTGTCTCCTTTCTGCT+TGG | + | chr3.4:82517361-82517380 | MS.gene02493:CDS | 40.0% | |
| TCGCTGTTTGTGTTTCTTTG+CGG | + | chr3.4:82518371-82518390 | MS.gene02493:CDS | 40.0% | |
| TCTCACAGCTTCTTCTTTGT+TGG | + | chr3.4:82516911-82516930 | MS.gene02493:intron | 40.0% | |
| TGGAGAACCATACATGATGA+CGG | - | chr3.4:82518105-82518124 | None:intergenic | 40.0% | |
| TGGCTTACCATAATTGAGAG+TGG | - | chr3.4:82518125-82518144 | None:intergenic | 40.0% | |
| TGGTTCTCCACTCTCAATTA+TGG | + | chr3.4:82518115-82518134 | MS.gene02493:CDS | 40.0% | |
| TGGTTTATATTCGGTCTGCT+AGG | + | chr3.4:82518401-82518420 | MS.gene02493:CDS | 40.0% | |
| TGTTGTTACCGGTATGTTGT+TGG | - | chr3.4:82517883-82517902 | None:intergenic | 40.0% | |
| TTGCTGTAAGTTAGTCCACT+CGG | + | chr3.4:82518438-82518457 | MS.gene02493:intron | 40.0% | |
| ! | TACACCATGATGGAAGCAAA+AGG | - | chr3.4:82517518-82517537 | None:intergenic | 40.0% |
| ! | TGTTTTCTCCCTGTTAACCA+CGG | + | chr3.4:82517006-82517025 | MS.gene02493:intron | 40.0% |
| ! | TTCTCCTTTTGCTTCCATCA+TGG | + | chr3.4:82517511-82517530 | MS.gene02493:intron | 40.0% |
| ! | TTCTGCTTTGTTCCTCTTCT+TGG | + | chr3.4:82516946-82516965 | MS.gene02493:CDS | 40.0% |
| ! | TTTCAGGTACCTAATGGTCT+TGG | + | chr3.4:82518539-82518558 | MS.gene02493:intron | 40.0% |
| !! | AGAGAGTACCAAGGTGAATA+GGG | - | chr3.4:82517994-82518013 | None:intergenic | 40.0% |
| !! | AGCTTCTTCTTTGTTGGTTC+AGG | + | chr3.4:82516917-82516936 | MS.gene02493:intron | 40.0% |
| !! | GATGACGGAAAATATAGCCA+TGG | - | chr3.4:82518090-82518109 | None:intergenic | 40.0% |
| !! | GCTTCTTCTTTGTTGGTTCA+GGG | + | chr3.4:82516918-82516937 | MS.gene02493:intron | 40.0% |
| !! | GTGCCATTTACTGTTGTTAC+CGG | - | chr3.4:82517894-82517913 | None:intergenic | 40.0% |
| !!! | ATGGTCTTGGTTCTGTTTTG+GGG | + | chr3.4:82518552-82518571 | MS.gene02493:CDS | 40.0% |
| AATCATAGGAAGGCCTTCTG+CGG | + | chr3.4:82518059-82518078 | MS.gene02493:CDS | 45.0% | |
| ATTCCCAACATCCACAGGTA+CGG | + | chr3.4:82517840-82517859 | MS.gene02493:intron | 45.0% | |
| ATTGCCATGGAAGGCAAAGA+GGG | - | chr3.4:82518042-82518061 | None:intergenic | 45.0% | |
| CTTCCATGGCAATCATAGGA+AGG | + | chr3.4:82518049-82518068 | MS.gene02493:CDS | 45.0% | |
| CTTCCTATGATTGCCATGGA+AGG | - | chr3.4:82518051-82518070 | None:intergenic | 45.0% | |
| TCCTTCACTAGTCCAAGAAG+AGG | + | chr3.4:82517774-82517793 | MS.gene02493:intron | 45.0% | |
| TGTGTCTCCCAACAACATAC+CGG | + | chr3.4:82517872-82517891 | MS.gene02493:CDS | 45.0% | |
| TGTTTCTTTGCGGCACTTCA+TGG | + | chr3.4:82518381-82518400 | MS.gene02493:CDS | 45.0% | |
| TTCTGATTCCCAACATCCAC+AGG | + | chr3.4:82517835-82517854 | MS.gene02493:intron | 45.0% | |
| TTGCCTTCCATGGCAATCAT+AGG | + | chr3.4:82518045-82518064 | MS.gene02493:CDS | 45.0% | |
| ! | AACCTTAGAGGCATGCAATG+TGG | + | chr3.4:82517605-82517624 | MS.gene02493:intron | 45.0% |
| !! | ACCTCTTCTTGGACTAGTGA+AGG | - | chr3.4:82517778-82517797 | None:intergenic | 45.0% |
| !! | AGAAGTGTCCGTGGTTAACA+GGG | - | chr3.4:82517017-82517036 | None:intergenic | 45.0% |
| !! | AGAGAACACAGAGAGTACCA+AGG | - | chr3.4:82518003-82518022 | None:intergenic | 45.0% |
| !! | CAGAGAGTACCAAGGTGAAT+AGG | - | chr3.4:82517995-82518014 | None:intergenic | 45.0% |
| !! | TAGAAGTGTCCGTGGTTAAC+AGG | - | chr3.4:82517018-82517037 | None:intergenic | 45.0% |
| AGACCGTACCTGTGGATGTT+GGG | - | chr3.4:82517846-82517865 | None:intergenic | 50.0% | |
| AGCTAGCTCACCAAGCAGAA+AGG | - | chr3.4:82517374-82517393 | None:intergenic | 50.0% | |
| AGGCCTTCCTATGATTGCCA+TGG | - | chr3.4:82518055-82518074 | None:intergenic | 50.0% | |
| CACCACATTGCATGCCTCTA+AGG | - | chr3.4:82517610-82517629 | None:intergenic | 50.0% | |
| CATACACAGGTGCCAAGAAG+AGG | - | chr3.4:82516961-82516980 | None:intergenic | 50.0% | |
| CGTACACACACACCTCTTCT+TGG | - | chr3.4:82517789-82517808 | None:intergenic | 50.0% | |
| GATTGCCATGGAAGGCAAAG+AGG | - | chr3.4:82518043-82518062 | None:intergenic | 50.0% | |
| TGGCATGAACTCCACACTCT+TGG | - | chr3.4:82518342-82518361 | None:intergenic | 50.0% | |
| !!! | GTGGTGACGAGTTGGTTTTG+AGG | - | chr3.4:82517170-82517189 | None:intergenic | 50.0% |
| CAAAAGGCAGACCGTACCTG+TGG | - | chr3.4:82517854-82517873 | None:intergenic | 55.0% | |
| CAGACCGTACCTGTGGATGT+TGG | - | chr3.4:82517847-82517866 | None:intergenic | 55.0% | |
| GTCTCCCTCTTTGCCTTCCA+TGG | + | chr3.4:82518035-82518054 | MS.gene02493:CDS | 55.0% | |
| ! | ACAGTAAATGGCACCGGAGC+AGG | + | chr3.4:82517900-82517919 | MS.gene02493:CDS | 55.0% |
| ! | CAGTAAATGGCACCGGAGCA+GGG | + | chr3.4:82517901-82517920 | MS.gene02493:CDS | 55.0% |
| AGCCATGGCAAAGCCGCAGA+AGG | - | chr3.4:82518075-82518094 | None:intergenic | 60.0% | |
| GGCCTTCTGCGGCTTTGCCA+TGG | + | chr3.4:82518070-82518089 | MS.gene02493:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 82516811 | 82518721 | 82516811 | ID=MS.gene02493 |
| chr3.4 | mRNA | 82516811 | 82518721 | 82516811 | ID=MS.gene02493.t1;Parent=MS.gene02493 |
| chr3.4 | exon | 82516811 | 82516844 | 82516811 | ID=MS.gene02493.t1.exon1;Parent=MS.gene02493.t1 |
| chr3.4 | CDS | 82516811 | 82516844 | 82516811 | ID=cds.MS.gene02493.t1;Parent=MS.gene02493.t1 |
| chr3.4 | exon | 82516939 | 82516975 | 82516939 | ID=MS.gene02493.t1.exon2;Parent=MS.gene02493.t1 |
| chr3.4 | CDS | 82516939 | 82516975 | 82516939 | ID=cds.MS.gene02493.t1;Parent=MS.gene02493.t1 |
| chr3.4 | exon | 82517287 | 82517382 | 82517287 | ID=MS.gene02493.t1.exon3;Parent=MS.gene02493.t1 |
| chr3.4 | CDS | 82517287 | 82517382 | 82517287 | ID=cds.MS.gene02493.t1;Parent=MS.gene02493.t1 |
| chr3.4 | exon | 82517857 | 82518136 | 82517857 | ID=MS.gene02493.t1.exon4;Parent=MS.gene02493.t1 |
| chr3.4 | CDS | 82517857 | 82518136 | 82517857 | ID=cds.MS.gene02493.t1;Parent=MS.gene02493.t1 |
| chr3.4 | exon | 82518323 | 82518442 | 82518323 | ID=MS.gene02493.t1.exon5;Parent=MS.gene02493.t1 |
| chr3.4 | CDS | 82518323 | 82518442 | 82518323 | ID=cds.MS.gene02493.t1;Parent=MS.gene02493.t1 |
| chr3.4 | exon | 82518545 | 82518721 | 82518545 | ID=MS.gene02493.t1.exon6;Parent=MS.gene02493.t1 |
| chr3.4 | CDS | 82518545 | 82518721 | 82518545 | ID=cds.MS.gene02493.t1;Parent=MS.gene02493.t1 |
| Gene Sequence |
| Protein sequence |
