Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009329.t1 | XP_013466427.1 | 96.8 | 188 | 5 | 1 | 8 | 194 | 57 | 244 | 1.60E-91 | 345.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009329.t1 | Q8L9J7 | 76.6 | 158 | 37 | 0 | 8 | 165 | 57 | 214 | 2.0e-63 | 243.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009329.t1 | A0A072VGC4 | 96.8 | 188 | 5 | 1 | 8 | 194 | 57 | 244 | 1.1e-91 | 345.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026933 | MS.gene009329 | PPI |
| MS.gene57091 | MS.gene009329 | PPI |
| MS.gene54672 | MS.gene009329 | PPI |
| MS.gene55828 | MS.gene009329 | PPI |
| MS.gene009329 | MS.gene026937 | PPI |
| MS.gene009329 | MS.gene70529 | PPI |
| MS.gene009329 | MS.gene46188 | PPI |
| MS.gene009329 | MS.gene048962 | PPI |
| MS.gene009329 | MS.gene25769 | PPI |
| MS.gene79035 | MS.gene009329 | PPI |
| MS.gene044269 | MS.gene009329 | PPI |
| MS.gene026935 | MS.gene009329 | PPI |
| MS.gene54638 | MS.gene009329 | PPI |
| MS.gene52388 | MS.gene009329 | PPI |
| MS.gene00279 | MS.gene009329 | PPI |
| MS.gene90281 | MS.gene009329 | PPI |
| MS.gene79032 | MS.gene009329 | PPI |
| MS.gene69746 | MS.gene009329 | PPI |
| MS.gene009329 | MS.gene79036 | PPI |
| MS.gene009329 | MS.gene54643 | PPI |
| MS.gene68896 | MS.gene009329 | PPI |
| MS.gene009329 | MS.gene026939 | PPI |
| MS.gene009329 | MS.gene026934 | PPI |
| MS.gene54644 | MS.gene009329 | PPI |
| MS.gene009329 | MS.gene004537 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009329.t1 | MTR_1g029380 | 96.809 | 188 | 5 | 1 | 8 | 194 | 57 | 244 | 2.04e-126 | 356 |
| MS.gene009329.t1 | MTR_3g089125 | 74.346 | 191 | 42 | 2 | 8 | 191 | 57 | 247 | 4.38e-97 | 282 |
| MS.gene009329.t1 | MTR_3g080990 | 44.324 | 185 | 92 | 2 | 7 | 190 | 59 | 233 | 1.41e-44 | 149 |
| MS.gene009329.t1 | MTR_8g042490 | 43.210 | 162 | 92 | 0 | 8 | 169 | 66 | 227 | 1.73e-41 | 140 |
| MS.gene009329.t1 | MTR_8g099730 | 38.983 | 177 | 107 | 1 | 7 | 182 | 5 | 181 | 5.32e-40 | 135 |
| MS.gene009329.t1 | MTR_8g099730 | 38.983 | 177 | 107 | 1 | 7 | 182 | 69 | 245 | 5.04e-39 | 134 |
| MS.gene009329.t1 | MTR_6g007633 | 42.941 | 170 | 95 | 2 | 8 | 175 | 60 | 229 | 5.08e-39 | 134 |
| MS.gene009329.t1 | MTR_2g073190 | 45.509 | 167 | 89 | 1 | 8 | 172 | 66 | 232 | 1.40e-38 | 140 |
| MS.gene009329.t1 | MTR_7g007490 | 43.713 | 167 | 89 | 3 | 12 | 175 | 64 | 228 | 1.46e-38 | 133 |
| MS.gene009329.t1 | MTR_5g092600 | 40.936 | 171 | 96 | 2 | 12 | 179 | 63 | 231 | 1.53e-37 | 130 |
| MS.gene009329.t1 | MTR_6g007623 | 41.916 | 167 | 95 | 2 | 8 | 172 | 57 | 223 | 7.77e-36 | 125 |
| MS.gene009329.t1 | MTR_6g007637 | 42.767 | 159 | 89 | 2 | 8 | 164 | 61 | 219 | 4.61e-34 | 121 |
| MS.gene009329.t1 | MTR_3g090950 | 39.785 | 186 | 99 | 3 | 8 | 190 | 58 | 233 | 1.55e-33 | 120 |
| MS.gene009329.t1 | MTR_3g090940 | 41.875 | 160 | 90 | 2 | 8 | 164 | 58 | 217 | 2.91e-33 | 119 |
| MS.gene009329.t1 | MTR_4g106990 | 42.424 | 165 | 93 | 2 | 8 | 170 | 67 | 231 | 3.62e-33 | 119 |
| MS.gene009329.t1 | MTR_1g028460 | 42.262 | 168 | 94 | 2 | 8 | 172 | 58 | 225 | 6.79e-33 | 118 |
| MS.gene009329.t1 | MTR_2g436310 | 42.675 | 157 | 89 | 1 | 19 | 174 | 66 | 222 | 3.04e-32 | 116 |
| MS.gene009329.t1 | MTR_8g096310 | 36.842 | 171 | 102 | 3 | 12 | 177 | 63 | 232 | 3.95e-31 | 114 |
| MS.gene009329.t1 | MTR_8g096320 | 36.471 | 170 | 106 | 2 | 12 | 179 | 8 | 177 | 1.08e-30 | 111 |
| MS.gene009329.t1 | MTR_8g096320 | 36.471 | 170 | 106 | 2 | 12 | 179 | 63 | 232 | 4.76e-30 | 111 |
| MS.gene009329.t1 | MTR_5g067530 | 37.143 | 175 | 107 | 2 | 12 | 185 | 64 | 236 | 9.13e-30 | 110 |
| MS.gene009329.t1 | MTR_2g007890 | 36.517 | 178 | 110 | 2 | 13 | 189 | 66 | 241 | 3.13e-29 | 110 |
| MS.gene009329.t1 | MTR_3g098910 | 38.562 | 153 | 87 | 4 | 16 | 164 | 68 | 217 | 3.23e-26 | 102 |
| MS.gene009329.t1 | MTR_7g405710 | 37.912 | 182 | 106 | 3 | 12 | 189 | 63 | 241 | 6.54e-25 | 98.2 |
| MS.gene009329.t1 | MTR_6g007610 | 37.500 | 184 | 95 | 6 | 8 | 177 | 60 | 237 | 1.82e-24 | 96.3 |
| MS.gene009329.t1 | MTR_7g405730 | 40.541 | 148 | 87 | 1 | 16 | 162 | 67 | 214 | 4.60e-24 | 95.9 |
| MS.gene009329.t1 | MTR_3g098930 | 38.400 | 125 | 77 | 0 | 17 | 141 | 70 | 194 | 8.95e-19 | 80.5 |
| MS.gene009329.t1 | MTR_6g034600 | 42.553 | 94 | 50 | 1 | 57 | 150 | 3 | 92 | 2.59e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009329.t1 | AT1G21460 | 72.254 | 173 | 46 | 1 | 8 | 178 | 57 | 229 | 1.78e-87 | 258 |
| MS.gene009329.t1 | AT1G21460 | 76.119 | 134 | 32 | 0 | 8 | 141 | 57 | 190 | 3.24e-70 | 212 |
| MS.gene009329.t1 | AT5G62850 | 44.199 | 181 | 94 | 3 | 8 | 181 | 60 | 240 | 2.88e-45 | 150 |
| MS.gene009329.t1 | AT4G10850 | 46.497 | 157 | 80 | 3 | 7 | 160 | 61 | 216 | 7.04e-39 | 134 |
| MS.gene009329.t1 | AT1G66770 | 43.827 | 162 | 88 | 3 | 7 | 165 | 61 | 222 | 4.46e-38 | 132 |
| MS.gene009329.t1 | AT5G53190 | 46.471 | 170 | 86 | 3 | 4 | 169 | 54 | 222 | 9.01e-38 | 131 |
| MS.gene009329.t1 | AT4G15920 | 41.935 | 186 | 96 | 4 | 8 | 184 | 57 | 239 | 7.01e-37 | 128 |
| MS.gene009329.t1 | AT3G16690 | 44.000 | 175 | 78 | 4 | 8 | 174 | 57 | 219 | 6.69e-36 | 125 |
| MS.gene009329.t1 | AT3G16690 | 44.000 | 175 | 78 | 4 | 8 | 174 | 92 | 254 | 1.57e-35 | 125 |
| MS.gene009329.t1 | AT5G62850 | 47.407 | 135 | 70 | 1 | 8 | 141 | 60 | 194 | 2.65e-35 | 124 |
| MS.gene009329.t1 | AT3G28007 | 47.436 | 156 | 77 | 3 | 8 | 160 | 60 | 213 | 5.24e-35 | 124 |
| MS.gene009329.t1 | AT3G14770 | 41.566 | 166 | 95 | 1 | 8 | 173 | 66 | 229 | 1.24e-33 | 120 |
| MS.gene009329.t1 | AT5G40260 | 39.444 | 180 | 103 | 5 | 8 | 182 | 60 | 238 | 1.33e-33 | 120 |
| MS.gene009329.t1 | AT4G25010 | 43.624 | 149 | 79 | 2 | 19 | 164 | 71 | 217 | 4.34e-33 | 119 |
| MS.gene009329.t1 | AT5G50800 | 40.881 | 159 | 85 | 3 | 19 | 174 | 71 | 223 | 6.36e-33 | 119 |
| MS.gene009329.t1 | AT5G50790 | 40.667 | 150 | 88 | 1 | 13 | 161 | 64 | 213 | 2.85e-30 | 112 |
| MS.gene009329.t1 | AT5G23660 | 38.690 | 168 | 98 | 2 | 16 | 182 | 69 | 232 | 1.65e-28 | 108 |
| MS.gene009329.t1 | AT2G39060 | 38.217 | 157 | 95 | 2 | 19 | 174 | 70 | 225 | 7.97e-28 | 105 |
| MS.gene009329.t1 | AT3G48740 | 37.576 | 165 | 101 | 2 | 16 | 178 | 69 | 233 | 1.13e-27 | 105 |
| MS.gene009329.t1 | AT5G13170 | 32.418 | 182 | 119 | 4 | 13 | 190 | 66 | 247 | 4.79e-26 | 101 |
| MS.gene009329.t1 | AT5G40260 | 39.735 | 151 | 85 | 5 | 8 | 153 | 60 | 209 | 2.45e-24 | 95.5 |
Find 39 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATATACCGTGGCAATAA+AGG | 0.237019 | 3.4:+1770934 | MS.gene009329:CDS |
| TTGAGTACTTACAGCAATAA+AGG | 0.270502 | 3.4:-1770720 | None:intergenic |
| ATACTTGTAACAATCATAAA+TGG | 0.288935 | 3.4:+1769725 | MS.gene009329:CDS |
| TGGTTCACCACTCTCAATTA+TGG | 0.331676 | 3.4:+1769952 | MS.gene009329:CDS |
| ACTCAAAGGGGACACGTCTT+AGG | 0.350487 | 3.4:+1771026 | MS.gene009329:CDS |
| TGAGTACTTACAGCAATAAA+GGG | 0.379246 | 3.4:-1770719 | None:intergenic |
| TCATATACCGTGGCAATAAA+GGG | 0.391647 | 3.4:+1770935 | MS.gene009329:CDS |
| CATAGTGTTTGCACCTAAGA+AGG | 0.399744 | 3.4:+1769787 | MS.gene009329:CDS |
| AAAAGAAGAAGCAATGGAAA+TGG | 0.400581 | 3.4:+1770975 | MS.gene009329:CDS |
| TTGAGTTCTCCTTCTCCCAT+TGG | 0.403157 | 3.4:-1771009 | None:intergenic |
| ATTTCTCTGTTTGCTTTGCA+TGG | 0.424862 | 3.4:+1769872 | MS.gene009329:CDS |
| TTGCTTTGCATGGTAATTCA+AGG | 0.425094 | 3.4:+1769882 | MS.gene009329:CDS |
| TATTTCTCTGTGGTACCTCA+TGG | 0.428995 | 3.4:+1770669 | MS.gene009329:CDS |
| GTAACAATCATAAATGGAAC+AGG | 0.472310 | 3.4:+1769731 | MS.gene009329:CDS |
| TGTGATTTGTAGGTACCAAA+TGG | 0.483257 | 3.4:+1770871 | MS.gene009329:intron |
| AAAGAAGAAGCAATGGAAAT+GGG | 0.488219 | 3.4:+1770976 | MS.gene009329:CDS |
| ACAAATAGTGAAAGGAAGAA+TGG | 0.498561 | 3.4:-1770647 | None:intergenic |
| TGGGAGAAGGAGAACTCAAA+GGG | 0.502157 | 3.4:+1771013 | MS.gene009329:CDS |
| ATTGTTACAAGTATGTTGTC+TGG | 0.525537 | 3.4:-1769716 | None:intergenic |
| TTGCATTCCCTTTATTGCCA+CGG | 0.536676 | 3.4:-1770942 | None:intergenic |
| ATGGGCACTGCAAAACCAAT+GGG | 0.538420 | 3.4:+1770994 | MS.gene009329:CDS |
| ACCAACAAAAGAAGAAGCAA+TGG | 0.543234 | 3.4:+1770969 | MS.gene009329:CDS |
| TCACTATTTGTATTTCTCTG+TGG | 0.547904 | 3.4:+1770659 | MS.gene009329:CDS |
| AAGGAGAAGCTGAAAATAAG+TGG | 0.553518 | 3.4:+1769806 | MS.gene009329:CDS |
| AATGGGCACTGCAAAACCAA+TGG | 0.555676 | 3.4:+1770993 | MS.gene009329:CDS |
| TTGTAGGTACCAAATGGAGT+GGG | 0.568840 | 3.4:+1770877 | MS.gene009329:intron |
| AGAGAAATACAAATAGTGAA+AGG | 0.596231 | 3.4:-1770655 | None:intergenic |
| ACTGCAAAACCAATGGGAGA+AGG | 0.607134 | 3.4:+1771000 | MS.gene009329:CDS |
| TGCAAACACTGTTATTACAA+AGG | 0.611290 | 3.4:-1769837 | None:intergenic |
| ATGGGAGAAGGAGAACTCAA+AGG | 0.612902 | 3.4:+1771012 | MS.gene009329:CDS |
| AGTGATCAAAACAAAGAGTG+TGG | 0.615735 | 3.4:+1770616 | MS.gene009329:CDS |
| TTACAGCAATAAAGGGGTCA+CGG | 0.634308 | 3.4:-1770712 | None:intergenic |
| ATGTTGTCTGGTGACACAAA+TGG | 0.639503 | 3.4:-1769704 | None:intergenic |
| AAACTTACCATAATTGAGAG+TGG | 0.640874 | 3.4:-1769959 | None:intergenic |
| TTTGTAGGTACCAAATGGAG+TGG | 0.643688 | 3.4:+1770876 | MS.gene009329:intron |
| ATATTGTATTTCATATACCG+TGG | 0.658275 | 3.4:+1770925 | MS.gene009329:CDS |
| GAGTACTTACAGCAATAAAG+GGG | 0.676810 | 3.4:-1770718 | None:intergenic |
| TGTAGGTACCAAATGGAGTG+GGG | 0.700887 | 3.4:+1770878 | MS.gene009329:intron |
| GGGAGAAGGAGAACTCAAAG+GGG | 0.753959 | 3.4:+1771014 | MS.gene009329:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTAACAAAAGAAAT+TGG | - | chr3.4:1770580-1770599 | None:intergenic | 10.0% |
| !! | TTTCATATAAACTTTATATA+TGG | + | chr3.4:1769473-1769492 | MS.gene009329:intron | 10.0% |
| !! | AAATATCAACATAAATAAGT+TGG | - | chr3.4:1770210-1770229 | None:intergenic | 15.0% |
| !! | ACCATATAGTAAAAATAATA+GGG | - | chr3.4:1769511-1769530 | None:intergenic | 15.0% |
| !! | TACCATATAGTAAAAATAAT+AGG | - | chr3.4:1769512-1769531 | None:intergenic | 15.0% |
| !! | TATATAATGTACTATGTATA+AGG | - | chr3.4:1770523-1770542 | None:intergenic | 15.0% |
| !! | TATATACATGAAAAAAGATA+AGG | - | chr3.4:1770072-1770091 | None:intergenic | 15.0% |
| !! | AAAAAATGAAGAAAATCACA+TGG | - | chr3.4:1769404-1769423 | None:intergenic | 20.0% |
| !! | AAAAATGAAGAAAATCACAT+GGG | - | chr3.4:1769403-1769422 | None:intergenic | 20.0% |
| !! | ACTATCAAATATCCTAATTA+AGG | - | chr3.4:1770113-1770132 | None:intergenic | 20.0% |
| !! | ATACTTGTAACAATCATAAA+TGG | + | chr3.4:1769725-1769744 | MS.gene009329:CDS | 20.0% |
| !! | TAAATAACCAAAACAGATAA+AGG | - | chr3.4:1770382-1770401 | None:intergenic | 20.0% |
| !! | TATGAAATTAATCATCGAAA+CGG | + | chr3.4:1770176-1770195 | MS.gene009329:intron | 20.0% |
| !! | TGAAAACAATGATTAACAAA+AGG | - | chr3.4:1770410-1770429 | None:intergenic | 20.0% |
| !! | TGAAATTTAACATATGAACT+AGG | + | chr3.4:1770765-1770784 | MS.gene009329:intron | 20.0% |
| !!! | ACCCTATTATTTTTACTATA+TGG | + | chr3.4:1769507-1769526 | MS.gene009329:intron | 20.0% |
| !!! | ATATTTTAAACTGCTTTACA+AGG | + | chr3.4:1770224-1770243 | MS.gene009329:intron | 20.0% |
| !!! | GAAAATGTTCATTTAATTTC+TGG | + | chr3.4:1769618-1769637 | MS.gene009329:intron | 20.0% |
| ! | AATAGTTAACCACCTTAATT+AGG | + | chr3.4:1770098-1770117 | MS.gene009329:intron | 25.0% |
| ! | AGAGAAATACAAATAGTGAA+AGG | - | chr3.4:1770658-1770677 | None:intergenic | 25.0% |
| ! | ATATTGTATTTCATATACCG+TGG | + | chr3.4:1770925-1770944 | MS.gene009329:CDS | 25.0% |
| ! | ATCAAATATCCTAATTAAGG+TGG | - | chr3.4:1770110-1770129 | None:intergenic | 25.0% |
| ! | ATGAAAATGATGCAAAACAA+AGG | - | chr3.4:1769459-1769478 | None:intergenic | 25.0% |
| ! | TAAATTCTAACGACAAGATA+AGG | - | chr3.4:1770029-1770048 | None:intergenic | 25.0% |
| ! | TGAAAATGATGCAAAACAAA+GGG | - | chr3.4:1769458-1769477 | None:intergenic | 25.0% |
| ! | TGGATTTAATAGGTCAAAAA+AGG | - | chr3.4:1770336-1770355 | None:intergenic | 25.0% |
| ! | TTCAATTGAATTGAATGTGA+AGG | - | chr3.4:1769583-1769602 | None:intergenic | 25.0% |
| ! | TTCGATGATTAATTTCATAG+CGG | - | chr3.4:1770175-1770194 | None:intergenic | 25.0% |
| ! | TTTAAAAGTGAATGATCATG+TGG | - | chr3.4:1770447-1770466 | None:intergenic | 25.0% |
| !! | GAGTATATGTAACAATTTTC+AGG | + | chr3.4:1769672-1769691 | MS.gene009329:intron | 25.0% |
| !! | GTATTTTCAATCATCATGTA+TGG | + | chr3.4:1769932-1769951 | MS.gene009329:CDS | 25.0% |
| !! | TCCTAAATGAATTTTGTGTA+GGG | - | chr3.4:1770494-1770513 | None:intergenic | 25.0% |
| !! | TTCCTAAATGAATTTTGTGT+AGG | - | chr3.4:1770495-1770514 | None:intergenic | 25.0% |
| !!! | GTGATTTTCTTCATTTTTTG+TGG | + | chr3.4:1769405-1769424 | MS.gene009329:intron | 25.0% |
| !!! | TATGTAACAATTTTCAGGTA+TGG | + | chr3.4:1769677-1769696 | MS.gene009329:intron | 25.0% |
| AAAAGAAGAAGCAATGGAAA+TGG | + | chr3.4:1770975-1770994 | MS.gene009329:CDS | 30.0% | |
| AAACTTACCATAATTGAGAG+TGG | - | chr3.4:1769962-1769981 | None:intergenic | 30.0% | |
| AAAGAAGAAGCAATGGAAAT+GGG | + | chr3.4:1770976-1770995 | MS.gene009329:CDS | 30.0% | |
| ACAAATAGTGAAAGGAAGAA+TGG | - | chr3.4:1770650-1770669 | None:intergenic | 30.0% | |
| ACCCTACACAAAATTCATTT+AGG | + | chr3.4:1770490-1770509 | MS.gene009329:intron | 30.0% | |
| AGGAATAATGAAATGACATG+TGG | + | chr3.4:1770785-1770804 | MS.gene009329:intron | 30.0% | |
| ATTGCCAAATACAATGCAAA+TGG | - | chr3.4:1770824-1770843 | None:intergenic | 30.0% | |
| ATTGTTACAAGTATGTTGTC+TGG | - | chr3.4:1769719-1769738 | None:intergenic | 30.0% | |
| GGAAAAAGATTTCATGCATT+AGG | - | chr3.4:1770315-1770334 | None:intergenic | 30.0% | |
| GTAACAATCATAAATGGAAC+AGG | + | chr3.4:1769731-1769750 | MS.gene009329:CDS | 30.0% | |
| TCACTATTTGTATTTCTCTG+TGG | + | chr3.4:1770659-1770678 | MS.gene009329:CDS | 30.0% | |
| TGAGTACTTACAGCAATAAA+GGG | - | chr3.4:1770722-1770741 | None:intergenic | 30.0% | |
| TGCAAACACTGTTATTACAA+AGG | - | chr3.4:1769840-1769859 | None:intergenic | 30.0% | |
| TGTACCATTTGCATTGTATT+TGG | + | chr3.4:1770817-1770836 | MS.gene009329:intron | 30.0% | |
| TTGAGTACTTACAGCAATAA+AGG | - | chr3.4:1770723-1770742 | None:intergenic | 30.0% | |
| ! | ATGATAGTGACAAAATGATG+AGG | + | chr3.4:1770842-1770861 | MS.gene009329:intron | 30.0% |
| !!! | AATTCAAGGAAAGTGTTTTG+TGG | + | chr3.4:1769896-1769915 | MS.gene009329:CDS | 30.0% |
| !!! | TGGTTCATTTTTGGTCTATT+AGG | + | chr3.4:1770689-1770708 | MS.gene009329:CDS | 30.0% |
| AAGGAGAAGCTGAAAATAAG+TGG | + | chr3.4:1769806-1769825 | MS.gene009329:CDS | 35.0% | |
| ACCAACAAAAGAAGAAGCAA+TGG | + | chr3.4:1770969-1770988 | MS.gene009329:CDS | 35.0% | |
| AGTGATCAAAACAAAGAGTG+TGG | + | chr3.4:1770616-1770635 | MS.gene009329:CDS | 35.0% | |
| ATTTCTCTGTTTGCTTTGCA+TGG | + | chr3.4:1769872-1769891 | MS.gene009329:CDS | 35.0% | |
| CAGATAAAGGACAACAGAAA+AGG | - | chr3.4:1770369-1770388 | None:intergenic | 35.0% | |
| CTAACGACAAGATAAGGATA+AGG | - | chr3.4:1770023-1770042 | None:intergenic | 35.0% | |
| CTTGTGGATCTGGATTTAAT+AGG | - | chr3.4:1770346-1770365 | None:intergenic | 35.0% | |
| GAGTACTTACAGCAATAAAG+GGG | - | chr3.4:1770721-1770740 | None:intergenic | 35.0% | |
| TAGACCAAAAATGAACCATG+AGG | - | chr3.4:1770687-1770706 | None:intergenic | 35.0% | |
| TCATATACCGTGGCAATAAA+GGG | + | chr3.4:1770935-1770954 | MS.gene009329:CDS | 35.0% | |
| TTCATATACCGTGGCAATAA+AGG | + | chr3.4:1770934-1770953 | MS.gene009329:CDS | 35.0% | |
| TTGCTTTGCATGGTAATTCA+AGG | + | chr3.4:1769882-1769901 | MS.gene009329:CDS | 35.0% | |
| ! | ATTTTCAGCTTCTCCTTCTT+AGG | - | chr3.4:1769803-1769822 | None:intergenic | 35.0% |
| ! | CTGTTGTCCTTTATCTGTTT+TGG | + | chr3.4:1770372-1770391 | MS.gene009329:intron | 35.0% |
| ! | TCCATTGCTTCTTCTTTTGT+TGG | - | chr3.4:1770973-1770992 | None:intergenic | 35.0% |
| ! | TGTGATTTGTAGGTACCAAA+TGG | + | chr3.4:1770871-1770890 | MS.gene009329:intron | 35.0% |
| !! | GAGGCAATTTTGTGATTTGT+AGG | + | chr3.4:1770861-1770880 | MS.gene009329:intron | 35.0% |
| AAAAATGACCCCACTCCATT+TGG | - | chr3.4:1770889-1770908 | None:intergenic | 40.0% | |
| ATGTTGTCTGGTGACACAAA+TGG | - | chr3.4:1769707-1769726 | None:intergenic | 40.0% | |
| ATTCCTTAGTCTCGAGTCTT+TGG | + | chr3.4:1770147-1770166 | MS.gene009329:intron | 40.0% | |
| CATAGTGTTTGCACCTAAGA+AGG | + | chr3.4:1769787-1769806 | MS.gene009329:CDS | 40.0% | |
| TATTTCTCTGTGGTACCTCA+TGG | + | chr3.4:1770669-1770688 | MS.gene009329:CDS | 40.0% | |
| TGGTTCACCACTCTCAATTA+TGG | + | chr3.4:1769952-1769971 | MS.gene009329:CDS | 40.0% | |
| TTACAGCAATAAAGGGGTCA+CGG | - | chr3.4:1770715-1770734 | None:intergenic | 40.0% | |
| TTGCATTCCCTTTATTGCCA+CGG | - | chr3.4:1770945-1770964 | None:intergenic | 40.0% | |
| TTGTAGGTACCAAATGGAGT+GGG | + | chr3.4:1770877-1770896 | MS.gene009329:intron | 40.0% | |
| TTTGTAGGTACCAAATGGAG+TGG | + | chr3.4:1770876-1770895 | MS.gene009329:intron | 40.0% | |
| ! | GGTACCTCATGGTTCATTTT+TGG | + | chr3.4:1770680-1770699 | MS.gene009329:CDS | 40.0% |
| !!! | AATGGAGTGGGGTCATTTTT+AGG | + | chr3.4:1770889-1770908 | MS.gene009329:CDS | 40.0% |
| !!! | ATGGAGTGGGGTCATTTTTA+GGG | + | chr3.4:1770890-1770909 | MS.gene009329:CDS | 40.0% |
| ACAGAAAAGGCTTGTGGATC+TGG | - | chr3.4:1770356-1770375 | None:intergenic | 45.0% | |
| ACTGCAAAACCAATGGGAGA+AGG | + | chr3.4:1771000-1771019 | MS.gene009329:CDS | 45.0% | |
| AGGACAACAGAAAAGGCTTG+TGG | - | chr3.4:1770362-1770381 | None:intergenic | 45.0% | |
| ATGGGAGAAGGAGAACTCAA+AGG | + | chr3.4:1771012-1771031 | MS.gene009329:CDS | 45.0% | |
| GATCCAAAGACTCGAGACTA+AGG | - | chr3.4:1770153-1770172 | None:intergenic | 45.0% | |
| TGGGAGAAGGAGAACTCAAA+GGG | + | chr3.4:1771013-1771032 | MS.gene009329:CDS | 45.0% | |
| TGTAGGTACCAAATGGAGTG+GGG | + | chr3.4:1770878-1770897 | MS.gene009329:intron | 45.0% | |
| TTGAGTTCTCCTTCTCCCAT+TGG | - | chr3.4:1771012-1771031 | None:intergenic | 45.0% | |
| ! | AATGGGCACTGCAAAACCAA+TGG | + | chr3.4:1770993-1771012 | MS.gene009329:CDS | 45.0% |
| ! | ATGGGCACTGCAAAACCAAT+GGG | + | chr3.4:1770994-1771013 | MS.gene009329:CDS | 45.0% |
| GGGAGAAGGAGAACTCAAAG+GGG | + | chr3.4:1771014-1771033 | MS.gene009329:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 1769385 | 1771047 | 1769385 | ID=MS.gene009329 |
| chr3.4 | mRNA | 1769385 | 1771047 | 1769385 | ID=MS.gene009329.t1;Parent=MS.gene009329 |
| chr3.4 | exon | 1769385 | 1769404 | 1769385 | ID=MS.gene009329.t1.exon1;Parent=MS.gene009329.t1 |
| chr3.4 | CDS | 1769385 | 1769404 | 1769385 | ID=cds.MS.gene009329.t1;Parent=MS.gene009329.t1 |
| chr3.4 | exon | 1769694 | 1769973 | 1769694 | ID=MS.gene009329.t1.exon2;Parent=MS.gene009329.t1 |
| chr3.4 | CDS | 1769694 | 1769973 | 1769694 | ID=cds.MS.gene009329.t1;Parent=MS.gene009329.t1 |
| chr3.4 | exon | 1770611 | 1770730 | 1770611 | ID=MS.gene009329.t1.exon3;Parent=MS.gene009329.t1 |
| chr3.4 | CDS | 1770611 | 1770730 | 1770611 | ID=cds.MS.gene009329.t1;Parent=MS.gene009329.t1 |
| chr3.4 | exon | 1770883 | 1771047 | 1770883 | ID=MS.gene009329.t1.exon4;Parent=MS.gene009329.t1 |
| chr3.4 | CDS | 1770883 | 1771047 | 1770883 | ID=cds.MS.gene009329.t1;Parent=MS.gene009329.t1 |
| Gene Sequence |
| Protein sequence |
