Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009331.t1 | XP_013466427.1 | 97.1 | 244 | 6 | 1 | 1 | 243 | 1 | 244 | 1.00E-124 | 456.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009331.t1 | Q8L9J7 | 78.5 | 214 | 46 | 0 | 1 | 214 | 1 | 214 | 2.2e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009331.t1 | A0A072VGC4 | 97.1 | 244 | 6 | 1 | 1 | 243 | 1 | 244 | 7.5e-125 | 456.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009331 | MS.gene026939 | PPI |
| MS.gene68896 | MS.gene009331 | PPI |
| MS.gene54644 | MS.gene009331 | PPI |
| MS.gene009331 | MS.gene026934 | PPI |
| MS.gene009331 | MS.gene54643 | PPI |
| MS.gene57091 | MS.gene009331 | PPI |
| MS.gene009331 | MS.gene004537 | PPI |
| MS.gene026933 | MS.gene009331 | PPI |
| MS.gene79035 | MS.gene009331 | PPI |
| MS.gene009331 | MS.gene026937 | PPI |
| MS.gene026935 | MS.gene009331 | PPI |
| MS.gene009331 | MS.gene70529 | PPI |
| MS.gene009331 | MS.gene46188 | PPI |
| MS.gene009331 | MS.gene048962 | PPI |
| MS.gene009331 | MS.gene25769 | PPI |
| MS.gene54672 | MS.gene009331 | PPI |
| MS.gene55828 | MS.gene009331 | PPI |
| MS.gene044269 | MS.gene009331 | PPI |
| MS.gene54638 | MS.gene009331 | PPI |
| MS.gene52388 | MS.gene009331 | PPI |
| MS.gene00279 | MS.gene009331 | PPI |
| MS.gene90281 | MS.gene009331 | PPI |
| MS.gene009331 | MS.gene79036 | PPI |
| MS.gene79032 | MS.gene009331 | PPI |
| MS.gene69746 | MS.gene009331 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009331.t1 | MTR_1g029380 | 97.131 | 244 | 6 | 1 | 1 | 243 | 1 | 244 | 3.03e-169 | 466 |
| MS.gene009331.t1 | MTR_3g089125 | 75.709 | 247 | 53 | 2 | 1 | 240 | 1 | 247 | 5.25e-133 | 375 |
| MS.gene009331.t1 | MTR_8g042490 | 46.190 | 210 | 113 | 0 | 9 | 218 | 18 | 227 | 7.46e-62 | 194 |
| MS.gene009331.t1 | MTR_3g080990 | 43.096 | 239 | 125 | 2 | 2 | 239 | 5 | 233 | 1.96e-58 | 186 |
| MS.gene009331.t1 | MTR_2g073190 | 47.297 | 222 | 115 | 1 | 2 | 221 | 11 | 232 | 2.76e-58 | 196 |
| MS.gene009331.t1 | MTR_3g090950 | 43.162 | 234 | 120 | 3 | 9 | 239 | 10 | 233 | 9.60e-55 | 176 |
| MS.gene009331.t1 | MTR_3g090940 | 45.192 | 208 | 111 | 2 | 9 | 213 | 10 | 217 | 1.80e-54 | 176 |
| MS.gene009331.t1 | MTR_8g099730 | 40.693 | 231 | 136 | 1 | 2 | 231 | 15 | 245 | 3.37e-54 | 175 |
| MS.gene009331.t1 | MTR_1g028460 | 45.370 | 216 | 115 | 2 | 9 | 221 | 10 | 225 | 6.25e-54 | 174 |
| MS.gene009331.t1 | MTR_6g007633 | 42.273 | 220 | 125 | 2 | 7 | 224 | 10 | 229 | 2.97e-51 | 167 |
| MS.gene009331.t1 | MTR_2g436310 | 43.379 | 219 | 121 | 2 | 6 | 223 | 6 | 222 | 1.87e-49 | 162 |
| MS.gene009331.t1 | MTR_7g007490 | 43.439 | 221 | 118 | 4 | 7 | 224 | 12 | 228 | 3.47e-49 | 162 |
| MS.gene009331.t1 | MTR_5g092600 | 42.453 | 212 | 115 | 3 | 20 | 228 | 24 | 231 | 1.33e-48 | 160 |
| MS.gene009331.t1 | MTR_6g007623 | 41.593 | 226 | 130 | 2 | 7 | 230 | 7 | 232 | 4.36e-48 | 159 |
| MS.gene009331.t1 | MTR_6g007637 | 42.056 | 214 | 122 | 2 | 2 | 213 | 6 | 219 | 4.76e-46 | 154 |
| MS.gene009331.t1 | MTR_5g067530 | 38.462 | 234 | 139 | 3 | 2 | 234 | 7 | 236 | 3.01e-44 | 150 |
| MS.gene009331.t1 | MTR_2g007890 | 36.975 | 238 | 141 | 4 | 5 | 238 | 9 | 241 | 1.27e-41 | 144 |
| MS.gene009331.t1 | MTR_8g096320 | 36.444 | 225 | 139 | 3 | 6 | 228 | 10 | 232 | 1.58e-41 | 142 |
| MS.gene009331.t1 | MTR_4g106990 | 42.347 | 196 | 111 | 2 | 26 | 219 | 36 | 231 | 3.25e-41 | 141 |
| MS.gene009331.t1 | MTR_8g096310 | 35.217 | 230 | 141 | 4 | 2 | 226 | 6 | 232 | 3.53e-41 | 142 |
| MS.gene009331.t1 | MTR_7g405710 | 38.618 | 246 | 138 | 5 | 1 | 238 | 1 | 241 | 1.25e-39 | 138 |
| MS.gene009331.t1 | MTR_3g098910 | 37.736 | 212 | 124 | 3 | 6 | 213 | 10 | 217 | 1.63e-39 | 139 |
| MS.gene009331.t1 | MTR_8g099730 | 39.205 | 176 | 106 | 1 | 57 | 231 | 6 | 181 | 5.43e-39 | 134 |
| MS.gene009331.t1 | MTR_7g405730 | 37.743 | 257 | 143 | 5 | 1 | 243 | 1 | 254 | 6.35e-39 | 136 |
| MS.gene009331.t1 | MTR_6g007610 | 36.134 | 238 | 132 | 6 | 3 | 226 | 6 | 237 | 3.68e-33 | 120 |
| MS.gene009331.t1 | MTR_3g098930 | 40.000 | 185 | 110 | 1 | 6 | 190 | 11 | 194 | 5.61e-33 | 119 |
| MS.gene009331.t1 | MTR_8g096320 | 36.000 | 175 | 110 | 2 | 56 | 228 | 3 | 177 | 1.26e-30 | 112 |
| MS.gene009331.t1 | MTR_6g034600 | 42.553 | 94 | 50 | 1 | 106 | 199 | 3 | 92 | 6.00e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009331.t1 | AT1G21460 | 75.109 | 229 | 55 | 1 | 1 | 227 | 1 | 229 | 2.27e-124 | 353 |
| MS.gene009331.t1 | AT1G21460 | 78.421 | 190 | 41 | 0 | 1 | 190 | 1 | 190 | 1.07e-106 | 306 |
| MS.gene009331.t1 | AT5G53190 | 46.818 | 220 | 114 | 2 | 2 | 218 | 3 | 222 | 6.02e-59 | 187 |
| MS.gene009331.t1 | AT5G62850 | 43.162 | 234 | 126 | 3 | 4 | 230 | 7 | 240 | 3.88e-58 | 184 |
| MS.gene009331.t1 | AT4G10850 | 45.755 | 212 | 111 | 3 | 1 | 209 | 6 | 216 | 3.74e-55 | 177 |
| MS.gene009331.t1 | AT1G66770 | 44.240 | 217 | 118 | 3 | 1 | 214 | 6 | 222 | 3.90e-55 | 177 |
| MS.gene009331.t1 | AT3G14770 | 44.860 | 214 | 116 | 1 | 9 | 222 | 18 | 229 | 8.54e-55 | 176 |
| MS.gene009331.t1 | AT4G15920 | 41.322 | 242 | 130 | 4 | 1 | 233 | 1 | 239 | 2.85e-52 | 170 |
| MS.gene009331.t1 | AT5G40260 | 41.810 | 232 | 129 | 5 | 5 | 231 | 8 | 238 | 2.19e-50 | 165 |
| MS.gene009331.t1 | AT3G16690 | 42.174 | 230 | 112 | 5 | 2 | 223 | 3 | 219 | 5.49e-50 | 163 |
| MS.gene009331.t1 | AT3G16690 | 42.174 | 230 | 112 | 5 | 2 | 223 | 38 | 254 | 1.17e-49 | 164 |
| MS.gene009331.t1 | AT5G62850 | 45.213 | 188 | 102 | 1 | 4 | 190 | 7 | 194 | 6.69e-48 | 157 |
| MS.gene009331.t1 | AT3G28007 | 46.667 | 210 | 107 | 3 | 3 | 209 | 6 | 213 | 8.31e-47 | 156 |
| MS.gene009331.t1 | AT5G50800 | 40.271 | 221 | 122 | 4 | 6 | 223 | 10 | 223 | 8.39e-47 | 157 |
| MS.gene009331.t1 | AT4G25010 | 42.584 | 209 | 114 | 3 | 8 | 213 | 12 | 217 | 1.96e-45 | 153 |
| MS.gene009331.t1 | AT5G13170 | 35.714 | 238 | 147 | 5 | 6 | 239 | 12 | 247 | 4.04e-44 | 150 |
| MS.gene009331.t1 | AT5G50790 | 40.000 | 205 | 120 | 2 | 7 | 210 | 11 | 213 | 6.68e-44 | 149 |
| MS.gene009331.t1 | AT5G23660 | 37.885 | 227 | 134 | 3 | 6 | 231 | 12 | 232 | 1.32e-41 | 144 |
| MS.gene009331.t1 | AT5G40260 | 42.929 | 198 | 107 | 5 | 5 | 197 | 8 | 204 | 5.69e-41 | 140 |
| MS.gene009331.t1 | AT3G48740 | 37.054 | 224 | 137 | 3 | 6 | 227 | 12 | 233 | 9.75e-40 | 139 |
| MS.gene009331.t1 | AT2G39060 | 36.530 | 219 | 135 | 3 | 6 | 223 | 10 | 225 | 9.38e-38 | 133 |
| MS.gene009331.t1 | AT3G16690 | 41.333 | 150 | 72 | 3 | 6 | 147 | 6 | 147 | 1.34e-24 | 97.1 |
Find 46 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTGTCTTCTTTCTTCT+TGG | 0.170147 | 3.1:+1567864 | MS.gene009331:CDS |
| TTCATATACCGTGGCAATAA+AGG | 0.237019 | 3.1:+1569454 | MS.gene009331:CDS |
| TTGAGTACTTACAGCAATAA+AGG | 0.270502 | 3.1:-1569240 | None:intergenic |
| ATACTTGTAACAATCATAAA+TGG | 0.288935 | 3.1:+1568245 | MS.gene009331:CDS |
| TGGTTCACCACTCTCAATTA+TGG | 0.331676 | 3.1:+1568472 | MS.gene009331:CDS |
| AGACAGTTGAGAAGTGTCAT+AGG | 0.343405 | 3.1:-1567851 | None:intergenic |
| TGTGTTGCAGGAAATGCTTT+TGG | 0.344870 | 3.1:+1567620 | MS.gene009331:intron |
| ACTCAAAGGGGACACGTCTT+AGG | 0.350487 | 3.1:+1569546 | MS.gene009331:CDS |
| TTGGAGCCAAGAAGAGAAAA+AGG | 0.355062 | 3.1:-1567643 | None:intergenic |
| TGAGTACTTACAGCAATAAA+GGG | 0.379246 | 3.1:-1569239 | None:intergenic |
| TCATATACCGTGGCAATAAA+GGG | 0.391647 | 3.1:+1569455 | MS.gene009331:CDS |
| CATAGTGTTTGCACCTAAGA+AGG | 0.399744 | 3.1:+1568307 | MS.gene009331:CDS |
| AAAAGAAGAAGCAATGGAAA+TGG | 0.400581 | 3.1:+1569495 | MS.gene009331:CDS |
| TTGAGTTCTCCTTCTCCCAT+TGG | 0.403157 | 3.1:-1569529 | None:intergenic |
| ATTTCTCTGTTTGCTTTGCA+TGG | 0.424862 | 3.1:+1568392 | MS.gene009331:CDS |
| TTGCTTTGCATGGTAATTCA+AGG | 0.425094 | 3.1:+1568402 | MS.gene009331:CDS |
| TATTTCTCTGTGGTACCTCA+TGG | 0.428995 | 3.1:+1569189 | MS.gene009331:CDS |
| GTAACAATCATAAATGGAAC+AGG | 0.472310 | 3.1:+1568251 | MS.gene009331:CDS |
| TGTGATTTGTAGGTACCAAA+TGG | 0.483257 | 3.1:+1569391 | MS.gene009331:intron |
| AAAGAAGAAGCAATGGAAAT+GGG | 0.488219 | 3.1:+1569496 | MS.gene009331:CDS |
| ACAAATAGTGAAAGGAAGAA+TGG | 0.498561 | 3.1:-1569167 | None:intergenic |
| TGGGAGAAGGAGAACTCAAA+GGG | 0.502157 | 3.1:+1569533 | MS.gene009331:CDS |
| TTGAGAAGTGTCATAGGGTA+AGG | 0.509943 | 3.1:-1567845 | None:intergenic |
| ATTGTTACAAGTATGTTGTC+TGG | 0.525537 | 3.1:-1568236 | None:intergenic |
| TTGCATTCCCTTTATTGCCA+CGG | 0.536676 | 3.1:-1569462 | None:intergenic |
| ATGGGCACTGCAAAACCAAT+GGG | 0.538420 | 3.1:+1569514 | MS.gene009331:CDS |
| ACCAACAAAAGAAGAAGCAA+TGG | 0.543234 | 3.1:+1569489 | MS.gene009331:CDS |
| TCACTATTTGTATTTCTCTG+TGG | 0.547904 | 3.1:+1569179 | MS.gene009331:CDS |
| AAGGAGAAGCTGAAAATAAG+TGG | 0.553518 | 3.1:+1568326 | MS.gene009331:CDS |
| AATGGGCACTGCAAAACCAA+TGG | 0.555676 | 3.1:+1569513 | MS.gene009331:CDS |
| GACAGTTGAGAAGTGTCATA+GGG | 0.555759 | 3.1:-1567850 | None:intergenic |
| TTTGTAGAATCACTTTCAAG+AGG | 0.557302 | 3.1:+1567783 | MS.gene009331:intron |
| TTGTAGGTACCAAATGGAGT+GGG | 0.568840 | 3.1:+1569397 | MS.gene009331:intron |
| AGAGAAATACAAATAGTGAA+AGG | 0.596231 | 3.1:-1569175 | None:intergenic |
| ACTGCAAAACCAATGGGAGA+AGG | 0.607134 | 3.1:+1569520 | MS.gene009331:CDS |
| TGCAAACACTGTTATTACAA+AGG | 0.611290 | 3.1:-1568357 | None:intergenic |
| ATGGGAGAAGGAGAACTCAA+AGG | 0.612902 | 3.1:+1569532 | MS.gene009331:CDS |
| AGTGATCAAAACAAAGAGTG+TGG | 0.615735 | 3.1:+1569136 | MS.gene009331:CDS |
| TTACAGCAATAAAGGGGTCA+CGG | 0.634308 | 3.1:-1569232 | None:intergenic |
| ATGTTGTCTGGTGACACAAA+TGG | 0.639503 | 3.1:-1568224 | None:intergenic |
| AAACTTACCATAATTGAGAG+TGG | 0.640874 | 3.1:-1568479 | None:intergenic |
| TTTGTAGGTACCAAATGGAG+TGG | 0.643688 | 3.1:+1569396 | MS.gene009331:intron |
| ATATTGTATTTCATATACCG+TGG | 0.658275 | 3.1:+1569445 | MS.gene009331:CDS |
| GAGTACTTACAGCAATAAAG+GGG | 0.676810 | 3.1:-1569238 | None:intergenic |
| TGTAGGTACCAAATGGAGTG+GGG | 0.700887 | 3.1:+1569398 | MS.gene009331:intron |
| GGGAGAAGGAGAACTCAAAG+GGG | 0.753959 | 3.1:+1569534 | MS.gene009331:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTAACAAAAGAAAT+TGG | - | chr3.1:1569100-1569119 | None:intergenic | 10.0% |
| !! | TTTCATATAAACTTTATATA+TGG | + | chr3.1:1567993-1568012 | MS.gene009331:intron | 10.0% |
| !! | AAATATCAACATAAATAAGT+TGG | - | chr3.1:1568730-1568749 | None:intergenic | 15.0% |
| !! | AAGAAATGAAAAAGATTAAA+AGG | - | chr3.1:1567686-1567705 | None:intergenic | 15.0% |
| !! | ACCATATAGTAAAAATAATA+GGG | - | chr3.1:1568031-1568050 | None:intergenic | 15.0% |
| !! | AGAAATGAAAAAGATTAAAA+GGG | - | chr3.1:1567685-1567704 | None:intergenic | 15.0% |
| !! | TACCATATAGTAAAAATAAT+AGG | - | chr3.1:1568032-1568051 | None:intergenic | 15.0% |
| !! | TATATAATGTACTATGTATA+AGG | - | chr3.1:1569043-1569062 | None:intergenic | 15.0% |
| !! | TATATACATGAAAAAAGATA+AGG | - | chr3.1:1568592-1568611 | None:intergenic | 15.0% |
| !!! | AATTTAATCTTTTTTGTGTA+TGG | + | chr3.1:1567725-1567744 | MS.gene009331:intron | 15.0% |
| !! | AAAAAATGAAGAAAATCACA+TGG | - | chr3.1:1567924-1567943 | None:intergenic | 20.0% |
| !! | AAAAATGAAGAAAATCACAT+GGG | - | chr3.1:1567923-1567942 | None:intergenic | 20.0% |
| !! | ACTATCAAATATCCTAATTA+AGG | - | chr3.1:1568633-1568652 | None:intergenic | 20.0% |
| !! | ATACTTGTAACAATCATAAA+TGG | + | chr3.1:1568245-1568264 | MS.gene009331:CDS | 20.0% |
| !! | TAAATAACCAAAACAGATAA+AGG | - | chr3.1:1568902-1568921 | None:intergenic | 20.0% |
| !! | TATGAAATTAATCATCGAAA+CGG | + | chr3.1:1568696-1568715 | MS.gene009331:intron | 20.0% |
| !! | TGAAAACAATGATTAACAAA+AGG | - | chr3.1:1568930-1568949 | None:intergenic | 20.0% |
| !! | TGAAATTTAACATATGAACT+AGG | + | chr3.1:1569285-1569304 | MS.gene009331:intron | 20.0% |
| !!! | ACCCTATTATTTTTACTATA+TGG | + | chr3.1:1568027-1568046 | MS.gene009331:intron | 20.0% |
| !!! | ATATTTTAAACTGCTTTACA+AGG | + | chr3.1:1568744-1568763 | MS.gene009331:intron | 20.0% |
| !!! | GAAAATGTTCATTTAATTTC+TGG | + | chr3.1:1568138-1568157 | MS.gene009331:intron | 20.0% |
| !!! | GATATTGCACATTTTATATT+CGG | + | chr3.1:1567501-1567520 | MS.gene009331:CDS | 20.0% |
| !!! | TTTGAGTTGAGTTTTAAATT+TGG | + | chr3.1:1567755-1567774 | MS.gene009331:intron | 20.0% |
| !!! | TTTTCATTTCTTGTTCTTTA+TGG | + | chr3.1:1567694-1567713 | MS.gene009331:intron | 20.0% |
| ! | AAAACCAAGAATTCAAAACA+AGG | - | chr3.1:1567559-1567578 | None:intergenic | 25.0% |
| ! | AAATCAACAGAAAAATTCTC+TGG | + | chr3.1:1567818-1567837 | MS.gene009331:CDS | 25.0% |
| ! | AATAGTTAACCACCTTAATT+AGG | + | chr3.1:1568618-1568637 | MS.gene009331:intron | 25.0% |
| ! | AGAGAAATACAAATAGTGAA+AGG | - | chr3.1:1569178-1569197 | None:intergenic | 25.0% |
| ! | ATATTGTATTTCATATACCG+TGG | + | chr3.1:1569445-1569464 | MS.gene009331:CDS | 25.0% |
| ! | ATCAAATATCCTAATTAAGG+TGG | - | chr3.1:1568630-1568649 | None:intergenic | 25.0% |
| ! | ATGAAAATGATGCAAAACAA+AGG | - | chr3.1:1567979-1567998 | None:intergenic | 25.0% |
| ! | TAAATTCTAACGACAAGATA+AGG | - | chr3.1:1568549-1568568 | None:intergenic | 25.0% |
| ! | TGAAAATGATGCAAAACAAA+GGG | - | chr3.1:1567978-1567997 | None:intergenic | 25.0% |
| ! | TGGATTTAATAGGTCAAAAA+AGG | - | chr3.1:1568856-1568875 | None:intergenic | 25.0% |
| ! | TTCAATTGAATTGAATGTGA+AGG | - | chr3.1:1568103-1568122 | None:intergenic | 25.0% |
| ! | TTCGATGATTAATTTCATAG+CGG | - | chr3.1:1568695-1568714 | None:intergenic | 25.0% |
| ! | TTTAAAAGTGAATGATCATG+TGG | - | chr3.1:1568967-1568986 | None:intergenic | 25.0% |
| !! | GAGTATATGTAACAATTTTC+AGG | + | chr3.1:1568192-1568211 | MS.gene009331:intron | 25.0% |
| !! | GTATTTTCAATCATCATGTA+TGG | + | chr3.1:1568452-1568471 | MS.gene009331:CDS | 25.0% |
| !! | TCCTAAATGAATTTTGTGTA+GGG | - | chr3.1:1569014-1569033 | None:intergenic | 25.0% |
| !! | TTCCTAAATGAATTTTGTGT+AGG | - | chr3.1:1569015-1569034 | None:intergenic | 25.0% |
| !!! | CATTTTATATTCGGAGTATT+TGG | + | chr3.1:1567510-1567529 | MS.gene009331:CDS | 25.0% |
| !!! | GTGATTTTCTTCATTTTTTG+TGG | + | chr3.1:1567925-1567944 | MS.gene009331:intron | 25.0% |
| !!! | TATGTAACAATTTTCAGGTA+TGG | + | chr3.1:1568197-1568216 | MS.gene009331:intron | 25.0% |
| AAAAGAAGAAGCAATGGAAA+TGG | + | chr3.1:1569495-1569514 | MS.gene009331:CDS | 30.0% | |
| AAACTTACCATAATTGAGAG+TGG | - | chr3.1:1568482-1568501 | None:intergenic | 30.0% | |
| AAAGAAGAAGCAATGGAAAT+GGG | + | chr3.1:1569496-1569515 | MS.gene009331:CDS | 30.0% | |
| ACAAATAGTGAAAGGAAGAA+TGG | - | chr3.1:1569170-1569189 | None:intergenic | 30.0% | |
| ACCCTACACAAAATTCATTT+AGG | + | chr3.1:1569010-1569029 | MS.gene009331:intron | 30.0% | |
| AGGAATAATGAAATGACATG+TGG | + | chr3.1:1569305-1569324 | MS.gene009331:intron | 30.0% | |
| ATTGCCAAATACAATGCAAA+TGG | - | chr3.1:1569344-1569363 | None:intergenic | 30.0% | |
| ATTGTTACAAGTATGTTGTC+TGG | - | chr3.1:1568239-1568258 | None:intergenic | 30.0% | |
| GGAAAAAGATTTCATGCATT+AGG | - | chr3.1:1568835-1568854 | None:intergenic | 30.0% | |
| GTAACAATCATAAATGGAAC+AGG | + | chr3.1:1568251-1568270 | MS.gene009331:CDS | 30.0% | |
| TCACTATTTGTATTTCTCTG+TGG | + | chr3.1:1569179-1569198 | MS.gene009331:CDS | 30.0% | |
| TGAGTACTTACAGCAATAAA+GGG | - | chr3.1:1569242-1569261 | None:intergenic | 30.0% | |
| TGCAAACACTGTTATTACAA+AGG | - | chr3.1:1568360-1568379 | None:intergenic | 30.0% | |
| TGTACCATTTGCATTGTATT+TGG | + | chr3.1:1569337-1569356 | MS.gene009331:intron | 30.0% | |
| TTGAGTACTTACAGCAATAA+AGG | - | chr3.1:1569243-1569262 | None:intergenic | 30.0% | |
| TTTGTAGAATCACTTTCAAG+AGG | + | chr3.1:1567783-1567802 | MS.gene009331:intron | 30.0% | |
| ! | ATGATAGTGACAAAATGATG+AGG | + | chr3.1:1569362-1569381 | MS.gene009331:intron | 30.0% |
| !!! | AATTCAAGGAAAGTGTTTTG+TGG | + | chr3.1:1568416-1568435 | MS.gene009331:CDS | 30.0% |
| !!! | ATCTCCTTGTTTTGAATTCT+TGG | + | chr3.1:1567552-1567571 | MS.gene009331:intron | 30.0% |
| !!! | TGGTTCATTTTTGGTCTATT+AGG | + | chr3.1:1569209-1569228 | MS.gene009331:CDS | 30.0% |
| AAGGAGAAGCTGAAAATAAG+TGG | + | chr3.1:1568326-1568345 | MS.gene009331:CDS | 35.0% | |
| ACCAACAAAAGAAGAAGCAA+TGG | + | chr3.1:1569489-1569508 | MS.gene009331:CDS | 35.0% | |
| AGTGATCAAAACAAAGAGTG+TGG | + | chr3.1:1569136-1569155 | MS.gene009331:CDS | 35.0% | |
| ATTTCTCTGTTTGCTTTGCA+TGG | + | chr3.1:1568392-1568411 | MS.gene009331:CDS | 35.0% | |
| CAGATAAAGGACAACAGAAA+AGG | - | chr3.1:1568889-1568908 | None:intergenic | 35.0% | |
| CTAACGACAAGATAAGGATA+AGG | - | chr3.1:1568543-1568562 | None:intergenic | 35.0% | |
| CTTGTGGATCTGGATTTAAT+AGG | - | chr3.1:1568866-1568885 | None:intergenic | 35.0% | |
| GAGTACTTACAGCAATAAAG+GGG | - | chr3.1:1569241-1569260 | None:intergenic | 35.0% | |
| GGGTCATTGCAAAAATACAT+TGG | - | chr3.1:1567665-1567684 | None:intergenic | 35.0% | |
| TAGACCAAAAATGAACCATG+AGG | - | chr3.1:1569207-1569226 | None:intergenic | 35.0% | |
| TCAACTGTCTTCTTTCTTCT+TGG | + | chr3.1:1567864-1567883 | MS.gene009331:CDS | 35.0% | |
| TCATATACCGTGGCAATAAA+GGG | + | chr3.1:1569455-1569474 | MS.gene009331:CDS | 35.0% | |
| TTCATATACCGTGGCAATAA+AGG | + | chr3.1:1569454-1569473 | MS.gene009331:CDS | 35.0% | |
| TTGCTTTGCATGGTAATTCA+AGG | + | chr3.1:1568402-1568421 | MS.gene009331:CDS | 35.0% | |
| ! | ATTTTCAGCTTCTCCTTCTT+AGG | - | chr3.1:1568323-1568342 | None:intergenic | 35.0% |
| ! | CATTTTCTTTCTTGTGTTGC+AGG | + | chr3.1:1567608-1567627 | MS.gene009331:intron | 35.0% |
| ! | CTGTTGTCCTTTATCTGTTT+TGG | + | chr3.1:1568892-1568911 | MS.gene009331:intron | 35.0% |
| ! | TCCATTGCTTCTTCTTTTGT+TGG | - | chr3.1:1569493-1569512 | None:intergenic | 35.0% |
| ! | TGTGATTTGTAGGTACCAAA+TGG | + | chr3.1:1569391-1569410 | MS.gene009331:intron | 35.0% |
| !! | GAGGCAATTTTGTGATTTGT+AGG | + | chr3.1:1569381-1569400 | MS.gene009331:intron | 35.0% |
| !! | TTTTGGCCTTTTTCTCTTCT+TGG | + | chr3.1:1567637-1567656 | MS.gene009331:CDS | 35.0% |
| AAAAATGACCCCACTCCATT+TGG | - | chr3.1:1569409-1569428 | None:intergenic | 40.0% | |
| ATGTTGTCTGGTGACACAAA+TGG | - | chr3.1:1568227-1568246 | None:intergenic | 40.0% | |
| ATTCCTTAGTCTCGAGTCTT+TGG | + | chr3.1:1568667-1568686 | MS.gene009331:intron | 40.0% | |
| CATAGTGTTTGCACCTAAGA+AGG | + | chr3.1:1568307-1568326 | MS.gene009331:CDS | 40.0% | |
| TATTTCTCTGTGGTACCTCA+TGG | + | chr3.1:1569189-1569208 | MS.gene009331:CDS | 40.0% | |
| TGGTTCACCACTCTCAATTA+TGG | + | chr3.1:1568472-1568491 | MS.gene009331:CDS | 40.0% | |
| TTACAGCAATAAAGGGGTCA+CGG | - | chr3.1:1569235-1569254 | None:intergenic | 40.0% | |
| TTGCATTCCCTTTATTGCCA+CGG | - | chr3.1:1569465-1569484 | None:intergenic | 40.0% | |
| TTGGAGCCAAGAAGAGAAAA+AGG | - | chr3.1:1567646-1567665 | None:intergenic | 40.0% | |
| TTGTAGGTACCAAATGGAGT+GGG | + | chr3.1:1569397-1569416 | MS.gene009331:intron | 40.0% | |
| TTTGTAGGTACCAAATGGAG+TGG | + | chr3.1:1569396-1569415 | MS.gene009331:intron | 40.0% | |
| ! | GGTACCTCATGGTTCATTTT+TGG | + | chr3.1:1569200-1569219 | MS.gene009331:CDS | 40.0% |
| ! | TGTGTTGCAGGAAATGCTTT+TGG | + | chr3.1:1567620-1567639 | MS.gene009331:intron | 40.0% |
| !! | AGACAGTTGAGAAGTGTCAT+AGG | - | chr3.1:1567854-1567873 | None:intergenic | 40.0% |
| !! | GACAGTTGAGAAGTGTCATA+GGG | - | chr3.1:1567853-1567872 | None:intergenic | 40.0% |
| !! | TTGAGAAGTGTCATAGGGTA+AGG | - | chr3.1:1567848-1567867 | None:intergenic | 40.0% |
| !!! | AATGGAGTGGGGTCATTTTT+AGG | + | chr3.1:1569409-1569428 | MS.gene009331:CDS | 40.0% |
| !!! | ATGGAGTGGGGTCATTTTTA+GGG | + | chr3.1:1569410-1569429 | MS.gene009331:CDS | 40.0% |
| ACAGAAAAGGCTTGTGGATC+TGG | - | chr3.1:1568876-1568895 | None:intergenic | 45.0% | |
| ACTGCAAAACCAATGGGAGA+AGG | + | chr3.1:1569520-1569539 | MS.gene009331:CDS | 45.0% | |
| AGGACAACAGAAAAGGCTTG+TGG | - | chr3.1:1568882-1568901 | None:intergenic | 45.0% | |
| ATGGGAGAAGGAGAACTCAA+AGG | + | chr3.1:1569532-1569551 | MS.gene009331:CDS | 45.0% | |
| GATCCAAAGACTCGAGACTA+AGG | - | chr3.1:1568673-1568692 | None:intergenic | 45.0% | |
| TGGGAGAAGGAGAACTCAAA+GGG | + | chr3.1:1569533-1569552 | MS.gene009331:CDS | 45.0% | |
| TGTAGGTACCAAATGGAGTG+GGG | + | chr3.1:1569398-1569417 | MS.gene009331:intron | 45.0% | |
| TTGAGTTCTCCTTCTCCCAT+TGG | - | chr3.1:1569532-1569551 | None:intergenic | 45.0% | |
| ! | AATGGGCACTGCAAAACCAA+TGG | + | chr3.1:1569513-1569532 | MS.gene009331:CDS | 45.0% |
| ! | ATGGGCACTGCAAAACCAAT+GGG | + | chr3.1:1569514-1569533 | MS.gene009331:CDS | 45.0% |
| GGGAGAAGGAGAACTCAAAG+GGG | + | chr3.1:1569534-1569553 | MS.gene009331:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 1567498 | 1569567 | 1567498 | ID=MS.gene009331 |
| chr3.1 | mRNA | 1567498 | 1569567 | 1567498 | ID=MS.gene009331.t1;Parent=MS.gene009331 |
| chr3.1 | exon | 1567498 | 1567531 | 1567498 | ID=MS.gene009331.t1.exon1;Parent=MS.gene009331.t1 |
| chr3.1 | CDS | 1567498 | 1567531 | 1567498 | ID=cds.MS.gene009331.t1;Parent=MS.gene009331.t1 |
| chr3.1 | exon | 1567630 | 1567666 | 1567630 | ID=MS.gene009331.t1.exon2;Parent=MS.gene009331.t1 |
| chr3.1 | CDS | 1567630 | 1567666 | 1567630 | ID=cds.MS.gene009331.t1;Parent=MS.gene009331.t1 |
| chr3.1 | exon | 1567790 | 1567885 | 1567790 | ID=MS.gene009331.t1.exon3;Parent=MS.gene009331.t1 |
| chr3.1 | CDS | 1567790 | 1567885 | 1567790 | ID=cds.MS.gene009331.t1;Parent=MS.gene009331.t1 |
| chr3.1 | exon | 1568214 | 1568493 | 1568214 | ID=MS.gene009331.t1.exon4;Parent=MS.gene009331.t1 |
| chr3.1 | CDS | 1568214 | 1568493 | 1568214 | ID=cds.MS.gene009331.t1;Parent=MS.gene009331.t1 |
| chr3.1 | exon | 1569131 | 1569250 | 1569131 | ID=MS.gene009331.t1.exon5;Parent=MS.gene009331.t1 |
| chr3.1 | CDS | 1569131 | 1569250 | 1569131 | ID=cds.MS.gene009331.t1;Parent=MS.gene009331.t1 |
| chr3.1 | exon | 1569403 | 1569567 | 1569403 | ID=MS.gene009331.t1.exon6;Parent=MS.gene009331.t1 |
| chr3.1 | CDS | 1569403 | 1569567 | 1569403 | ID=cds.MS.gene009331.t1;Parent=MS.gene009331.t1 |
| Gene Sequence |
| Protein sequence |
