Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02646.t1 | XP_013461374.1 | 96 | 247 | 10 | 0 | 1 | 247 | 1 | 247 | 5.30E-124 | 453.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02646.t1 | Q8L9J7 | 75.2 | 214 | 53 | 0 | 1 | 214 | 1 | 214 | 2.6e-87 | 323.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02646.t1 | A0A072V086 | 96.0 | 247 | 10 | 0 | 1 | 247 | 1 | 247 | 3.8e-124 | 453.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02646 | MS.gene026937 | PPI |
| MS.gene02646 | MS.gene70529 | PPI |
| MS.gene90281 | MS.gene02646 | PPI |
| MS.gene79032 | MS.gene02646 | PPI |
| MS.gene69746 | MS.gene02646 | PPI |
| MS.gene02646 | MS.gene46188 | PPI |
| MS.gene02646 | MS.gene048962 | PPI |
| MS.gene02646 | MS.gene25769 | PPI |
| MS.gene68896 | MS.gene02646 | PPI |
| MS.gene54644 | MS.gene02646 | PPI |
| MS.gene02646 | MS.gene79036 | PPI |
| MS.gene02646 | MS.gene026934 | PPI |
| MS.gene02646 | MS.gene54643 | PPI |
| MS.gene02646 | MS.gene026939 | PPI |
| MS.gene026933 | MS.gene02646 | PPI |
| MS.gene57091 | MS.gene02646 | PPI |
| MS.gene54672 | MS.gene02646 | PPI |
| MS.gene55828 | MS.gene02646 | PPI |
| MS.gene02646 | MS.gene004537 | PPI |
| MS.gene79035 | MS.gene02646 | PPI |
| MS.gene044269 | MS.gene02646 | PPI |
| MS.gene026935 | MS.gene02646 | PPI |
| MS.gene54638 | MS.gene02646 | PPI |
| MS.gene52388 | MS.gene02646 | PPI |
| MS.gene00279 | MS.gene02646 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02646.t1 | MTR_3g089125 | 95.951 | 247 | 10 | 0 | 1 | 247 | 1 | 247 | 2.98e-172 | 474 |
| MS.gene02646.t1 | MTR_1g029380 | 76.543 | 243 | 56 | 1 | 1 | 243 | 1 | 242 | 3.89e-132 | 373 |
| MS.gene02646.t1 | MTR_3g090940 | 45.690 | 232 | 122 | 3 | 2 | 229 | 3 | 234 | 5.05e-63 | 197 |
| MS.gene02646.t1 | MTR_8g042490 | 45.972 | 211 | 114 | 0 | 9 | 219 | 18 | 228 | 2.30e-61 | 193 |
| MS.gene02646.t1 | MTR_3g090950 | 45.852 | 229 | 120 | 3 | 5 | 229 | 6 | 234 | 5.31e-61 | 192 |
| MS.gene02646.t1 | MTR_1g028460 | 46.512 | 215 | 112 | 2 | 2 | 213 | 3 | 217 | 3.61e-58 | 185 |
| MS.gene02646.t1 | MTR_2g073190 | 45.495 | 222 | 121 | 0 | 2 | 223 | 11 | 232 | 7.38e-58 | 195 |
| MS.gene02646.t1 | MTR_3g080990 | 42.570 | 249 | 130 | 3 | 2 | 239 | 5 | 251 | 2.04e-57 | 184 |
| MS.gene02646.t1 | MTR_6g007633 | 43.379 | 219 | 118 | 4 | 9 | 221 | 12 | 230 | 1.70e-53 | 172 |
| MS.gene02646.t1 | MTR_8g099730 | 38.017 | 242 | 143 | 3 | 3 | 238 | 16 | 256 | 3.81e-52 | 170 |
| MS.gene02646.t1 | MTR_7g007490 | 40.948 | 232 | 131 | 4 | 6 | 234 | 11 | 239 | 2.24e-50 | 165 |
| MS.gene02646.t1 | MTR_5g092600 | 41.202 | 233 | 127 | 5 | 6 | 233 | 11 | 238 | 2.81e-49 | 162 |
| MS.gene02646.t1 | MTR_6g007623 | 42.534 | 221 | 120 | 4 | 9 | 222 | 9 | 229 | 1.76e-48 | 160 |
| MS.gene02646.t1 | MTR_2g436310 | 42.017 | 238 | 132 | 4 | 9 | 244 | 9 | 242 | 3.40e-48 | 159 |
| MS.gene02646.t1 | MTR_6g007637 | 42.791 | 215 | 119 | 4 | 2 | 213 | 6 | 219 | 9.24e-47 | 156 |
| MS.gene02646.t1 | MTR_5g067530 | 39.189 | 222 | 126 | 4 | 2 | 220 | 7 | 222 | 3.31e-44 | 150 |
| MS.gene02646.t1 | MTR_8g096310 | 34.498 | 229 | 144 | 3 | 2 | 227 | 6 | 231 | 9.97e-43 | 146 |
| MS.gene02646.t1 | MTR_3g098910 | 36.574 | 216 | 133 | 3 | 8 | 221 | 12 | 225 | 5.38e-42 | 145 |
| MS.gene02646.t1 | MTR_4g106990 | 41.624 | 197 | 114 | 1 | 26 | 221 | 36 | 232 | 2.30e-40 | 139 |
| MS.gene02646.t1 | MTR_8g096320 | 35.683 | 227 | 140 | 4 | 7 | 231 | 11 | 233 | 2.75e-40 | 139 |
| MS.gene02646.t1 | MTR_2g007890 | 37.443 | 219 | 128 | 4 | 8 | 222 | 15 | 228 | 5.13e-39 | 137 |
| MS.gene02646.t1 | MTR_7g405730 | 39.512 | 205 | 121 | 2 | 8 | 211 | 12 | 214 | 4.54e-38 | 134 |
| MS.gene02646.t1 | MTR_7g405710 | 36.667 | 240 | 145 | 4 | 8 | 242 | 12 | 249 | 5.87e-38 | 134 |
| MS.gene02646.t1 | MTR_8g099730 | 36.702 | 188 | 112 | 3 | 57 | 238 | 6 | 192 | 1.49e-37 | 130 |
| MS.gene02646.t1 | MTR_3g098930 | 36.957 | 184 | 115 | 1 | 7 | 190 | 12 | 194 | 3.45e-33 | 119 |
| MS.gene02646.t1 | MTR_6g007610 | 35.193 | 233 | 129 | 6 | 9 | 226 | 12 | 237 | 1.37e-30 | 114 |
| MS.gene02646.t1 | MTR_8g096320 | 35.802 | 162 | 101 | 2 | 71 | 231 | 19 | 178 | 2.31e-29 | 109 |
| MS.gene02646.t1 | MTR_6g034600 | 41.489 | 94 | 51 | 1 | 106 | 199 | 3 | 92 | 5.05e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02646.t1 | AT1G21460 | 69.512 | 246 | 72 | 1 | 1 | 246 | 1 | 243 | 8.27e-123 | 349 |
| MS.gene02646.t1 | AT1G21460 | 75.789 | 190 | 46 | 0 | 1 | 190 | 1 | 190 | 1.38e-102 | 296 |
| MS.gene02646.t1 | AT5G53190 | 44.255 | 235 | 128 | 2 | 2 | 233 | 3 | 237 | 8.86e-65 | 202 |
| MS.gene02646.t1 | AT3G14770 | 45.815 | 227 | 111 | 2 | 2 | 228 | 15 | 229 | 4.24e-55 | 177 |
| MS.gene02646.t1 | AT4G15920 | 43.348 | 233 | 124 | 5 | 1 | 228 | 1 | 230 | 3.34e-54 | 175 |
| MS.gene02646.t1 | AT5G62850 | 40.435 | 230 | 132 | 3 | 4 | 230 | 7 | 234 | 1.24e-53 | 173 |
| MS.gene02646.t1 | AT1G66770 | 41.631 | 233 | 127 | 4 | 1 | 230 | 6 | 232 | 2.09e-52 | 171 |
| MS.gene02646.t1 | AT4G10850 | 39.689 | 257 | 141 | 6 | 1 | 243 | 1 | 257 | 9.20e-52 | 169 |
| MS.gene02646.t1 | AT3G16690 | 43.256 | 215 | 114 | 4 | 9 | 219 | 9 | 219 | 1.90e-50 | 165 |
| MS.gene02646.t1 | AT3G16690 | 42.857 | 224 | 118 | 5 | 2 | 219 | 35 | 254 | 3.11e-50 | 165 |
| MS.gene02646.t1 | AT3G28007 | 46.667 | 210 | 109 | 3 | 2 | 209 | 5 | 213 | 2.83e-49 | 162 |
| MS.gene02646.t1 | AT5G40260 | 38.496 | 226 | 133 | 5 | 5 | 225 | 8 | 232 | 1.51e-45 | 152 |
| MS.gene02646.t1 | AT4G25010 | 38.462 | 234 | 137 | 4 | 2 | 229 | 6 | 238 | 1.49e-44 | 151 |
| MS.gene02646.t1 | AT5G50790 | 40.291 | 206 | 118 | 3 | 7 | 210 | 11 | 213 | 1.66e-44 | 151 |
| MS.gene02646.t1 | AT5G50800 | 37.339 | 233 | 138 | 3 | 7 | 238 | 11 | 236 | 1.80e-44 | 151 |
| MS.gene02646.t1 | AT5G62850 | 42.105 | 190 | 105 | 3 | 4 | 190 | 7 | 194 | 3.56e-43 | 145 |
| MS.gene02646.t1 | AT5G13170 | 35.319 | 235 | 137 | 5 | 7 | 239 | 13 | 234 | 2.74e-41 | 143 |
| MS.gene02646.t1 | AT5G23660 | 38.261 | 230 | 133 | 3 | 7 | 229 | 13 | 240 | 9.25e-41 | 141 |
| MS.gene02646.t1 | AT2G39060 | 37.273 | 220 | 132 | 3 | 7 | 225 | 11 | 225 | 1.44e-40 | 140 |
| MS.gene02646.t1 | AT3G48740 | 38.462 | 208 | 125 | 2 | 7 | 213 | 13 | 218 | 7.26e-39 | 137 |
| MS.gene02646.t1 | AT5G40260 | 39.378 | 193 | 111 | 5 | 7 | 194 | 10 | 201 | 5.59e-37 | 129 |
| MS.gene02646.t1 | AT3G16690 | 41.958 | 143 | 75 | 4 | 9 | 147 | 9 | 147 | 6.88e-24 | 95.5 |
Find 59 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGCTTTGTTCCTCTTCT+TGG | 0.090747 | 3.1:-72316366 | MS.gene02646:CDS |
| TAATGGTCTTGGTTCTGTTT+TGG | 0.179490 | 3.1:-72314760 | MS.gene02646:CDS |
| CATAAGATTGTTTCATTTGA+TGG | 0.195549 | 3.1:+72314631 | None:intergenic |
| TCCATTGATTCCTCTTCTAT+TGG | 0.234330 | 3.1:+72314672 | None:intergenic |
| TGTTTCTTTGCGGCACTTCA+TGG | 0.258501 | 3.1:-72314929 | MS.gene02646:CDS |
| TGGTTCTCCACTCTCAATTA+TGG | 0.317369 | 3.1:-72315195 | MS.gene02646:intron |
| CATCAAATGAAACAATCTTA+TGG | 0.323589 | 3.1:-72314630 | MS.gene02646:CDS |
| ATACCGGTAACAACAGTAAA+TGG | 0.331981 | 3.1:-72315422 | MS.gene02646:CDS |
| GGCACTTCATGGTTTATATT+CGG | 0.336382 | 3.1:-72314918 | MS.gene02646:CDS |
| GTCTCCCTCTTTGCCTTCCA+TGG | 0.339060 | 3.1:-72315275 | MS.gene02646:CDS |
| CAGAGAGTACCAAGGTGAAT+AGG | 0.345094 | 3.1:+72315318 | None:intergenic |
| GTGCCATTTACTGTTGTTAC+CGG | 0.352062 | 3.1:+72315419 | None:intergenic |
| TTGCCTTCCATGGCAATCAT+AGG | 0.381587 | 3.1:-72315265 | MS.gene02646:CDS |
| CATCATATTTGCACCTAAGA+AGG | 0.399786 | 3.1:-72315360 | MS.gene02646:CDS |
| TCGCTGTTTGTGTTTCTTTG+CGG | 0.403722 | 3.1:-72314939 | MS.gene02646:CDS |
| TTTCAGGTACCTAATGGTCT+TGG | 0.407841 | 3.1:-72314771 | MS.gene02646:intron |
| ACAGTAAATGGCACCGGAGC+AGG | 0.416818 | 3.1:-72315410 | MS.gene02646:CDS |
| AAAACAGAACCAAGACCATT+AGG | 0.423220 | 3.1:+72314762 | None:intergenic |
| AGAGAGTACCAAGGTGAATA+GGG | 0.429404 | 3.1:+72315319 | None:intergenic |
| TCAATTGTCTCCTTTCTGCT+TGG | 0.435363 | 3.1:-72315951 | MS.gene02646:intron |
| GGCCTTCTGCGGCTTTGCCA+TGG | 0.453114 | 3.1:-72315240 | MS.gene02646:CDS |
| TTGAGCAGTGTCATAACATA+TGG | 0.464848 | 3.1:+72315970 | None:intergenic |
| TGGCATGAACTCCACACTCT+TGG | 0.469786 | 3.1:+72314971 | None:intergenic |
| TGTTGTTACCGGTATGTTGT+TGG | 0.472054 | 3.1:+72315430 | None:intergenic |
| ACTAACTTACAGCAACAAAT+AGG | 0.474521 | 3.1:+72314880 | None:intergenic |
| GTTGTTACCGGTATGTTGTT+GGG | 0.478397 | 3.1:+72315431 | None:intergenic |
| GAATCAATGGAGATGGGTAA+TGG | 0.480093 | 3.1:-72314660 | MS.gene02646:CDS |
| TCTTATGGAAATGAAATTCA+AGG | 0.481566 | 3.1:-72314615 | MS.gene02646:CDS |
| TGGTTTATATTCGGTCTGCT+AGG | 0.491078 | 3.1:-72314909 | MS.gene02646:CDS |
| AGAAGAGGAATCAATGGAGA+TGG | 0.498039 | 3.1:-72314667 | MS.gene02646:CDS |
| TTGAAATACCTTTGTTGTCA+CGG | 0.503687 | 3.1:+72314706 | None:intergenic |
| TATGATTTCAATCCCTGCTC+CGG | 0.531246 | 3.1:+72315397 | None:intergenic |
| GAAGAGGAATCAATGGAGAT+GGG | 0.533130 | 3.1:-72314666 | MS.gene02646:CDS |
| ACAAACAGCGACAAGAAGAA+TGG | 0.536626 | 3.1:+72314951 | None:intergenic |
| ACCAATAGAAGAGGAATCAA+TGG | 0.540561 | 3.1:-72314673 | MS.gene02646:CDS |
| AGCTAGCTCACCAAGCAGAA+AGG | 0.551179 | 3.1:+72315941 | None:intergenic |
| TGTATAGGATTACATTCAAG+AGG | 0.558431 | 3.1:-72316032 | MS.gene02646:intron |
| AGCCATGGCAAAGCCGCAGA+AGG | 0.563128 | 3.1:+72315238 | None:intergenic |
| AATCTTTGCCCTATTCACCT+TGG | 0.568689 | 3.1:-72315327 | MS.gene02646:CDS |
| TGTGTCTCCCAACAACATAC+CGG | 0.568736 | 3.1:-72315438 | MS.gene02646:CDS |
| AGGCCTTCCTATGATTGCCA+TGG | 0.573899 | 3.1:+72315258 | None:intergenic |
| CTTCCTATGATTGCCATGGA+AGG | 0.577952 | 3.1:+72315262 | None:intergenic |
| CATACACAGGTGCCAAGAAG+AGG | 0.580321 | 3.1:+72316354 | None:intergenic |
| CAGTAAATGGCACCGGAGCA+GGG | 0.585691 | 3.1:-72315409 | MS.gene02646:CDS |
| TGGCTTACCATAATTGAGAG+TGG | 0.590723 | 3.1:+72315188 | None:intergenic |
| AAATCAGGCACCAATAGAAG+AGG | 0.597578 | 3.1:-72314682 | MS.gene02646:CDS |
| ATTGCCATGGAAGGCAAAGA+GGG | 0.598863 | 3.1:+72315271 | None:intergenic |
| GATTGCCATGGAAGGCAAAG+AGG | 0.600562 | 3.1:+72315270 | None:intergenic |
| GTAACAACAGTAAATGGCAC+CGG | 0.604393 | 3.1:-72315416 | MS.gene02646:CDS |
| ATGTTGTTGGGAGACACAAA+AGG | 0.620611 | 3.1:+72315443 | None:intergenic |
| CTTCCATGGCAATCATAGGA+AGG | 0.627717 | 3.1:-72315261 | MS.gene02646:CDS |
| TTCATATACCGTGACAACAA+AGG | 0.632876 | 3.1:-72314714 | MS.gene02646:CDS |
| AGTGATCAAAACCAAGAGTG+TGG | 0.637618 | 3.1:-72314982 | MS.gene02646:CDS |
| TGGAGAACCATACATGATGA+CGG | 0.640731 | 3.1:+72315208 | None:intergenic |
| TTACAGCAACAAATAGGTCA+CGG | 0.656357 | 3.1:+72314886 | None:intergenic |
| GATGACGGAAAATATAGCCA+TGG | 0.659780 | 3.1:+72315223 | None:intergenic |
| AATCATAGGAAGGCCTTCTG+CGG | 0.681842 | 3.1:-72315251 | MS.gene02646:CDS |
| TATGCCTGAAAATTTCTCTG+TGG | 0.709244 | 3.1:+72315993 | None:intergenic |
| AGAGAACACAGAGAGTACCA+AGG | 0.729090 | 3.1:+72315310 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACTTAAATATATTTATAAG+TGG | + | chr3.1:72314989-72315008 | None:intergenic | 15.0% |
| !! | AACAATTTACCATACAAAAT+TGG | + | chr3.1:72315273-72315292 | None:intergenic | 20.0% |
| !! | AATTTCAAATCCACAATAAA+TGG | + | chr3.1:72316097-72316116 | None:intergenic | 20.0% |
| !! | CTAGTATATGTCATTAATAT+TGG | + | chr3.1:72316038-72316057 | None:intergenic | 20.0% |
| !! | GGTCTTAAATATAAGTAAAA+AGG | - | chr3.1:72316261-72316280 | MS.gene02646:intron | 20.0% |
| !! | TTAAAAGCAAAAATATACCA+AGG | + | chr3.1:72315515-72315534 | None:intergenic | 20.0% |
| !! | TTTAATTGGAATATTTCGAA+AGG | - | chr3.1:72315549-72315568 | MS.gene02646:intron | 20.0% |
| !!! | CAGAATTTTTTTTTACAACA+AGG | + | chr3.1:72314689-72314708 | None:intergenic | 20.0% |
| !!! | CTCTTTTCTTATTTATTTTC+TGG | - | chr3.1:72314877-72314896 | MS.gene02646:intron | 20.0% |
| ! | AATCCTATACAAAACTCAAT+TGG | + | chr3.1:72315071-72315090 | None:intergenic | 25.0% |
| ! | AATTATGGTAAGCCAATTTA+CGG | - | chr3.1:72315932-72315951 | MS.gene02646:intron | 25.0% |
| ! | ATTTACCATACAAAATTGGA+AGG | + | chr3.1:72315269-72315288 | None:intergenic | 25.0% |
| ! | CATAAGATTGTTTCATTTGA+TGG | + | chr3.1:72316484-72316503 | None:intergenic | 25.0% |
| ! | CATCAAATGAAACAATCTTA+TGG | - | chr3.1:72316482-72316501 | MS.gene02646:intron | 25.0% |
| ! | TCTTATGGAAATGAAATTCA+AGG | - | chr3.1:72316497-72316516 | MS.gene02646:CDS | 25.0% |
| !! | TATGGTAAATTGTTGCTATT+TGG | - | chr3.1:72315279-72315298 | MS.gene02646:CDS | 25.0% |
| !!! | AGGGAATTTTATTACTTTTC+AGG | - | chr3.1:72316325-72316344 | MS.gene02646:intron | 25.0% |
| !!! | ATTTTGATCTTTTCCTTCTT+AGG | + | chr3.1:72315768-72315787 | None:intergenic | 25.0% |
| !!! | CAAAGGTATTTCAAAAAATC+AGG | - | chr3.1:72316415-72316434 | MS.gene02646:intron | 25.0% |
| !!! | GTTTTATTTAATGTGAGACT+TGG | - | chr3.1:72315012-72315031 | MS.gene02646:intron | 25.0% |
| !!! | TCTTATTTATTTTCTGGTTC+CGG | - | chr3.1:72314883-72314902 | MS.gene02646:intron | 25.0% |
| !!! | TTAGTGCATTCAGTTTTAAT+TGG | - | chr3.1:72315535-72315554 | MS.gene02646:intron | 25.0% |
| ACTAACTTACAGCAACAAAT+AGG | + | chr3.1:72316235-72316254 | None:intergenic | 30.0% | |
| AGAAGTTAATTACACCATGA+TGG | + | chr3.1:72315328-72315347 | None:intergenic | 30.0% | |
| CAAGAACAAACTCATTGTAA+GGG | - | chr3.1:72316306-72316325 | MS.gene02646:intron | 30.0% | |
| CTTTAATAGGAACAAAACCT+TGG | - | chr3.1:72315495-72315514 | MS.gene02646:intron | 30.0% | |
| TCAAGAACAAACTCATTGTA+AGG | - | chr3.1:72316305-72316324 | MS.gene02646:intron | 30.0% | |
| TGAACATGACTGTCTTTAAT+AGG | - | chr3.1:72315482-72315501 | MS.gene02646:intron | 30.0% | |
| TGTATAGGATTACATTCAAG+AGG | - | chr3.1:72315080-72315099 | MS.gene02646:intron | 30.0% | |
| ! | AAATCCACAGAGAAATTTTC+AGG | - | chr3.1:72315115-72315134 | MS.gene02646:intron | 30.0% |
| ! | ATATTTTCCGTCATCATGTA+TGG | - | chr3.1:72315897-72315916 | MS.gene02646:intron | 30.0% |
| ! | CTTTTATGGTTAAACCTTAG+AGG | - | chr3.1:72315393-72315412 | MS.gene02646:CDS | 30.0% |
| ! | TACATGCATAGCATCTTTTA+TGG | - | chr3.1:72315379-72315398 | MS.gene02646:CDS | 30.0% |
| ! | TACTTATATTTAAGACCGAG+TGG | + | chr3.1:72316258-72316277 | None:intergenic | 30.0% |
| ! | TTGAAATACCTTTGTTGTCA+CGG | + | chr3.1:72316409-72316428 | None:intergenic | 30.0% |
| !! | CATCTTTTGTTTGGCATATT+TGG | - | chr3.1:72314623-72314642 | MS.gene02646:CDS | 30.0% |
| !! | TGACCAATTGAGTTTTGTAT+AGG | - | chr3.1:72315065-72315084 | MS.gene02646:intron | 30.0% |
| !! | TTTTGTTTGGCATATTTGGT+AGG | - | chr3.1:72314627-72314646 | MS.gene02646:CDS | 30.0% |
| !!! | AAATGGCATGTTTTGGAATT+TGG | + | chr3.1:72316080-72316099 | None:intergenic | 30.0% |
| !!! | ATTACTTTTCAGGTACCTAA+TGG | - | chr3.1:72316335-72316354 | MS.gene02646:intron | 30.0% |
| AAAACAGAACCAAGACCATT+AGG | + | chr3.1:72316353-72316372 | None:intergenic | 35.0% | |
| AAAATCGTTGTGCCGTAAAT+TGG | + | chr3.1:72315947-72315966 | None:intergenic | 35.0% | |
| ACCAATAGAAGAGGAATCAA+TGG | - | chr3.1:72316439-72316458 | MS.gene02646:intron | 35.0% | |
| ATACCGGTAACAACAGTAAA+TGG | - | chr3.1:72315690-72315709 | MS.gene02646:intron | 35.0% | |
| CATCATATTTGCACCTAAGA+AGG | - | chr3.1:72315752-72315771 | MS.gene02646:intron | 35.0% | |
| GGCACTTCATGGTTTATATT+CGG | - | chr3.1:72316194-72316213 | MS.gene02646:intron | 35.0% | |
| GTGACTTGACACAAGATTTA+GGG | + | chr3.1:72315235-72315254 | None:intergenic | 35.0% | |
| TAACATAGTAGTACTAGAGC+CGG | + | chr3.1:72314905-72314924 | None:intergenic | 35.0% | |
| TATGCCTGAAAATTTCTCTG+TGG | + | chr3.1:72315122-72315141 | None:intergenic | 35.0% | |
| TGACTTGACACAAGATTTAG+GGG | + | chr3.1:72315234-72315253 | None:intergenic | 35.0% | |
| TTACAGCAACAAATAGGTCA+CGG | + | chr3.1:72316229-72316248 | None:intergenic | 35.0% | |
| TTCATATACCGTGACAACAA+AGG | - | chr3.1:72316398-72316417 | MS.gene02646:intron | 35.0% | |
| TTGAGCAGTGTCATAACATA+TGG | + | chr3.1:72315145-72315164 | None:intergenic | 35.0% | |
| ! | ATTTATAAGTGGTGACGAGT+TGG | + | chr3.1:72314978-72314997 | None:intergenic | 35.0% |
| ! | CCAAAACATGCCATTTATTG+TGG | - | chr3.1:72316084-72316103 | MS.gene02646:intron | 35.0% |
| ! | CCACAATAAATGGCATGTTT+TGG | + | chr3.1:72316087-72316106 | None:intergenic | 35.0% |
| ! | GATGTTGCACATCTTTTGTT+TGG | - | chr3.1:72314614-72314633 | MS.gene02646:CDS | 35.0% |
| ! | TGCTTCCTTCCAATTTTGTA+TGG | - | chr3.1:72315261-72315280 | MS.gene02646:CDS | 35.0% |
| !! | TCCATTGATTCCTCTTCTAT+TGG | + | chr3.1:72316443-72316462 | None:intergenic | 35.0% |
| !! | TCTTAAATTAGAAGTGTCCG+TGG | + | chr3.1:72314826-72314845 | None:intergenic | 35.0% |
| !!! | AATGGTCTTGGTTCTGTTTT+GGG | - | chr3.1:72316353-72316372 | MS.gene02646:intron | 35.0% |
| !!! | TAATGGTCTTGGTTCTGTTT+TGG | - | chr3.1:72316352-72316371 | MS.gene02646:intron | 35.0% |
| AAATCAGGCACCAATAGAAG+AGG | - | chr3.1:72316430-72316449 | MS.gene02646:intron | 40.0% | |
| AATCTTTGCCCTATTCACCT+TGG | - | chr3.1:72315785-72315804 | MS.gene02646:intron | 40.0% | |
| ACAAACAGCGACAAGAAGAA+TGG | + | chr3.1:72316164-72316183 | None:intergenic | 40.0% | |
| ACTTGACACAAGATTTAGGG+GGG | + | chr3.1:72315232-72315251 | None:intergenic | 40.0% | |
| AGAAGAGGAATCAATGGAGA+TGG | - | chr3.1:72316445-72316464 | MS.gene02646:intron | 40.0% | |
| AGTGATCAAAACCAAGAGTG+TGG | - | chr3.1:72316130-72316149 | MS.gene02646:intron | 40.0% | |
| ATGTTGTTGGGAGACACAAA+AGG | + | chr3.1:72315672-72315691 | None:intergenic | 40.0% | |
| CAGCCAAGTAATACATACAC+AGG | + | chr3.1:72314774-72314793 | None:intergenic | 40.0% | |
| CGTGACTTGACACAAGATTT+AGG | + | chr3.1:72315236-72315255 | None:intergenic | 40.0% | |
| GAAGAGGAATCAATGGAGAT+GGG | - | chr3.1:72316446-72316465 | MS.gene02646:intron | 40.0% | |
| GAAGCAAAAGGAGAAACAGT+TGG | + | chr3.1:72315306-72315325 | None:intergenic | 40.0% | |
| GAATCAATGGAGATGGGTAA+TGG | - | chr3.1:72316452-72316471 | MS.gene02646:intron | 40.0% | |
| GACTTGACACAAGATTTAGG+GGG | + | chr3.1:72315233-72315252 | None:intergenic | 40.0% | |
| GCAATGTGGTGAATTTAGGT+TGG | - | chr3.1:72315419-72315438 | MS.gene02646:CDS | 40.0% | |
| GCACCTGTGTATGTATTACT+TGG | - | chr3.1:72314768-72314787 | MS.gene02646:CDS | 40.0% | |
| GCATGCAATGTGGTGAATTT+AGG | - | chr3.1:72315415-72315434 | MS.gene02646:CDS | 40.0% | |
| GTAACAACAGTAAATGGCAC+CGG | - | chr3.1:72315696-72315715 | MS.gene02646:intron | 40.0% | |
| GTTGTTACCGGTATGTTGTT+GGG | + | chr3.1:72315684-72315703 | None:intergenic | 40.0% | |
| TATGATTTCAATCCCTGCTC+CGG | + | chr3.1:72315718-72315737 | None:intergenic | 40.0% | |
| TCAATTGTCTCCTTTCTGCT+TGG | - | chr3.1:72315161-72315180 | MS.gene02646:intron | 40.0% | |
| TCGCTGTTTGTGTTTCTTTG+CGG | - | chr3.1:72316173-72316192 | MS.gene02646:intron | 40.0% | |
| TCTCACAGCTTCTTCTTTGT+TGG | - | chr3.1:72314711-72314730 | MS.gene02646:CDS | 40.0% | |
| TGGAGAACCATACATGATGA+CGG | + | chr3.1:72315907-72315926 | None:intergenic | 40.0% | |
| TGGCTTACCATAATTGAGAG+TGG | + | chr3.1:72315927-72315946 | None:intergenic | 40.0% | |
| TGGTTCTCCACTCTCAATTA+TGG | - | chr3.1:72315917-72315936 | MS.gene02646:intron | 40.0% | |
| TGGTTTATATTCGGTCTGCT+AGG | - | chr3.1:72316203-72316222 | MS.gene02646:intron | 40.0% | |
| TGTTGTTACCGGTATGTTGT+TGG | + | chr3.1:72315685-72315704 | None:intergenic | 40.0% | |
| TTGCTGTAAGTTAGTCCACT+CGG | - | chr3.1:72316240-72316259 | MS.gene02646:intron | 40.0% | |
| ! | TACACCATGATGGAAGCAAA+AGG | + | chr3.1:72315318-72315337 | None:intergenic | 40.0% |
| ! | TGTTTTCTCCCTGTTAACCA+CGG | - | chr3.1:72314806-72314825 | MS.gene02646:intron | 40.0% |
| ! | TTCTCCTTTTGCTTCCATCA+TGG | - | chr3.1:72315311-72315330 | MS.gene02646:CDS | 40.0% |
| ! | TTCTGCTTTGTTCCTCTTCT+TGG | - | chr3.1:72314746-72314765 | MS.gene02646:CDS | 40.0% |
| ! | TTTCAGGTACCTAATGGTCT+TGG | - | chr3.1:72316341-72316360 | MS.gene02646:intron | 40.0% |
| !! | AGAGAGTACCAAGGTGAATA+GGG | + | chr3.1:72315796-72315815 | None:intergenic | 40.0% |
| !! | AGCTTCTTCTTTGTTGGTTC+AGG | - | chr3.1:72314717-72314736 | MS.gene02646:CDS | 40.0% |
| !! | GATGACGGAAAATATAGCCA+TGG | + | chr3.1:72315892-72315911 | None:intergenic | 40.0% |
| !! | GCTTCTTCTTTGTTGGTTCA+GGG | - | chr3.1:72314718-72314737 | MS.gene02646:CDS | 40.0% |
| !! | GTGCCATTTACTGTTGTTAC+CGG | + | chr3.1:72315696-72315715 | None:intergenic | 40.0% |
| !!! | ATGGTCTTGGTTCTGTTTTG+GGG | - | chr3.1:72316354-72316373 | MS.gene02646:intron | 40.0% |
| AATCATAGGAAGGCCTTCTG+CGG | - | chr3.1:72315861-72315880 | MS.gene02646:intron | 45.0% | |
| ATTCCCAACATCCACAGGTA+CGG | - | chr3.1:72315642-72315661 | MS.gene02646:intron | 45.0% | |
| ATTGCCATGGAAGGCAAAGA+GGG | + | chr3.1:72315844-72315863 | None:intergenic | 45.0% | |
| CTTCCATGGCAATCATAGGA+AGG | - | chr3.1:72315851-72315870 | MS.gene02646:intron | 45.0% | |
| CTTCCTATGATTGCCATGGA+AGG | + | chr3.1:72315853-72315872 | None:intergenic | 45.0% | |
| TACACACACACACCTCTTCT+TGG | + | chr3.1:72315589-72315608 | None:intergenic | 45.0% | |
| TCCTTCACTAGTCCAAGAAG+AGG | - | chr3.1:72315574-72315593 | MS.gene02646:intron | 45.0% | |
| TGTGTCTCCCAACAACATAC+CGG | - | chr3.1:72315674-72315693 | MS.gene02646:intron | 45.0% | |
| TGTTTCTTTGCGGCACTTCA+TGG | - | chr3.1:72316183-72316202 | MS.gene02646:intron | 45.0% | |
| TTCTGATTCCCAACATCCAC+AGG | - | chr3.1:72315637-72315656 | MS.gene02646:intron | 45.0% | |
| TTGCCTTCCATGGCAATCAT+AGG | - | chr3.1:72315847-72315866 | MS.gene02646:intron | 45.0% | |
| ! | AACCTTAGAGGCATGCAATG+TGG | - | chr3.1:72315405-72315424 | MS.gene02646:CDS | 45.0% |
| !! | ACCTCTTCTTGGACTAGTGA+AGG | + | chr3.1:72315578-72315597 | None:intergenic | 45.0% |
| !! | AGAAGTGTCCGTGGTTAACA+GGG | + | chr3.1:72314817-72314836 | None:intergenic | 45.0% |
| !! | AGAGAACACAGAGAGTACCA+AGG | + | chr3.1:72315805-72315824 | None:intergenic | 45.0% |
| !! | CAGAGAGTACCAAGGTGAAT+AGG | + | chr3.1:72315797-72315816 | None:intergenic | 45.0% |
| !! | TAGAAGTGTCCGTGGTTAAC+AGG | + | chr3.1:72314818-72314837 | None:intergenic | 45.0% |
| AGACCGTACCTGTGGATGTT+GGG | + | chr3.1:72315648-72315667 | None:intergenic | 50.0% | |
| AGCTAGCTCACCAAGCAGAA+AGG | + | chr3.1:72315174-72315193 | None:intergenic | 50.0% | |
| AGGCCTTCCTATGATTGCCA+TGG | + | chr3.1:72315857-72315876 | None:intergenic | 50.0% | |
| CACCACATTGCATGCCTCTA+AGG | + | chr3.1:72315410-72315429 | None:intergenic | 50.0% | |
| CATACACAGGTGCCAAGAAG+AGG | + | chr3.1:72314761-72314780 | None:intergenic | 50.0% | |
| GATTGCCATGGAAGGCAAAG+AGG | + | chr3.1:72315845-72315864 | None:intergenic | 50.0% | |
| TGGCATGAACTCCACACTCT+TGG | + | chr3.1:72316144-72316163 | None:intergenic | 50.0% | |
| !!! | GTGGTGACGAGTTGGTTTTG+AGG | + | chr3.1:72314970-72314989 | None:intergenic | 50.0% |
| CAAAAGGCAGACCGTACCTG+TGG | + | chr3.1:72315656-72315675 | None:intergenic | 55.0% | |
| CAGACCGTACCTGTGGATGT+TGG | + | chr3.1:72315649-72315668 | None:intergenic | 55.0% | |
| GTCTCCCTCTTTGCCTTCCA+TGG | - | chr3.1:72315837-72315856 | MS.gene02646:intron | 55.0% | |
| ! | ACAGTAAATGGCACCGGAGC+AGG | - | chr3.1:72315702-72315721 | MS.gene02646:intron | 55.0% |
| ! | CAGTAAATGGCACCGGAGCA+GGG | - | chr3.1:72315703-72315722 | MS.gene02646:intron | 55.0% |
| AGCCATGGCAAAGCCGCAGA+AGG | + | chr3.1:72315877-72315896 | None:intergenic | 60.0% | |
| GGCCTTCTGCGGCTTTGCCA+TGG | - | chr3.1:72315872-72315891 | MS.gene02646:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 72314611 | 72316523 | 72314611 | ID=MS.gene02646 |
| chr3.1 | mRNA | 72314611 | 72316523 | 72314611 | ID=MS.gene02646.t1;Parent=MS.gene02646 |
| chr3.1 | exon | 72316490 | 72316523 | 72316490 | ID=MS.gene02646.t1.exon1;Parent=MS.gene02646.t1 |
| chr3.1 | CDS | 72316490 | 72316523 | 72316490 | ID=cds.MS.gene02646.t1;Parent=MS.gene02646.t1 |
| chr3.1 | exon | 72316359 | 72316395 | 72316359 | ID=MS.gene02646.t1.exon2;Parent=MS.gene02646.t1 |
| chr3.1 | CDS | 72316359 | 72316395 | 72316359 | ID=cds.MS.gene02646.t1;Parent=MS.gene02646.t1 |
| chr3.1 | exon | 72315952 | 72316047 | 72315952 | ID=MS.gene02646.t1.exon3;Parent=MS.gene02646.t1 |
| chr3.1 | CDS | 72315952 | 72316047 | 72315952 | ID=cds.MS.gene02646.t1;Parent=MS.gene02646.t1 |
| chr3.1 | exon | 72315196 | 72315475 | 72315196 | ID=MS.gene02646.t1.exon4;Parent=MS.gene02646.t1 |
| chr3.1 | CDS | 72315196 | 72315475 | 72315196 | ID=cds.MS.gene02646.t1;Parent=MS.gene02646.t1 |
| chr3.1 | exon | 72314890 | 72315009 | 72314890 | ID=MS.gene02646.t1.exon5;Parent=MS.gene02646.t1 |
| chr3.1 | CDS | 72314890 | 72315009 | 72314890 | ID=cds.MS.gene02646.t1;Parent=MS.gene02646.t1 |
| chr3.1 | exon | 72314611 | 72314787 | 72314611 | ID=MS.gene02646.t1.exon6;Parent=MS.gene02646.t1 |
| chr3.1 | CDS | 72314611 | 72314787 | 72314611 | ID=cds.MS.gene02646.t1;Parent=MS.gene02646.t1 |
| Gene Sequence |
| Protein sequence |
