Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81949.t1 | XP_013461374.1 | 95.5 | 247 | 11 | 0 | 1 | 247 | 1 | 247 | 7.60E-123 | 449.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81949.t1 | Q8L9J7 | 74.8 | 214 | 54 | 0 | 1 | 214 | 1 | 214 | 3.7e-86 | 319.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81949.t1 | A0A072V086 | 95.5 | 247 | 11 | 0 | 1 | 247 | 1 | 247 | 5.5e-123 | 449.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70529 | MS.gene81949 | PPI |
| MS.gene68896 | MS.gene81949 | PPI |
| MS.gene54644 | MS.gene81949 | PPI |
| MS.gene54643 | MS.gene81949 | PPI |
| MS.gene57091 | MS.gene81949 | PPI |
| MS.gene55828 | MS.gene81949 | PPI |
| MS.gene004537 | MS.gene81949 | PPI |
| MS.gene026939 | MS.gene81949 | PPI |
| MS.gene026933 | MS.gene81949 | PPI |
| MS.gene044269 | MS.gene81949 | PPI |
| MS.gene026935 | MS.gene81949 | PPI |
| MS.gene54638 | MS.gene81949 | PPI |
| MS.gene25769 | MS.gene81949 | PPI |
| MS.gene52388 | MS.gene81949 | PPI |
| MS.gene00279 | MS.gene81949 | PPI |
| MS.gene46188 | MS.gene81949 | PPI |
| MS.gene54672 | MS.gene81949 | PPI |
| MS.gene026934 | MS.gene81949 | PPI |
| MS.gene69746 | MS.gene81949 | PPI |
| MS.gene048962 | MS.gene81949 | PPI |
| MS.gene79036 | MS.gene81949 | PPI |
| MS.gene79035 | MS.gene81949 | PPI |
| MS.gene90281 | MS.gene81949 | PPI |
| MS.gene79032 | MS.gene81949 | PPI |
| MS.gene026937 | MS.gene81949 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81949.t1 | MTR_3g089125 | 95.547 | 247 | 11 | 0 | 1 | 247 | 1 | 247 | 7.74e-171 | 471 |
| MS.gene81949.t1 | MTR_1g029380 | 76.132 | 243 | 57 | 1 | 1 | 243 | 1 | 242 | 1.01e-130 | 369 |
| MS.gene81949.t1 | MTR_3g090940 | 45.259 | 232 | 123 | 3 | 2 | 229 | 3 | 234 | 2.28e-61 | 193 |
| MS.gene81949.t1 | MTR_8g042490 | 45.972 | 211 | 114 | 0 | 9 | 219 | 18 | 228 | 7.68e-61 | 191 |
| MS.gene81949.t1 | MTR_3g090950 | 45.415 | 229 | 121 | 3 | 5 | 229 | 6 | 234 | 1.82e-59 | 188 |
| MS.gene81949.t1 | MTR_2g073190 | 45.495 | 222 | 121 | 0 | 2 | 223 | 11 | 232 | 1.34e-57 | 194 |
| MS.gene81949.t1 | MTR_3g080990 | 42.570 | 249 | 130 | 3 | 2 | 239 | 5 | 251 | 2.28e-57 | 184 |
| MS.gene81949.t1 | MTR_1g028460 | 46.047 | 215 | 113 | 2 | 2 | 213 | 3 | 217 | 1.45e-56 | 181 |
| MS.gene81949.t1 | MTR_6g007633 | 43.379 | 219 | 118 | 4 | 9 | 221 | 12 | 230 | 2.83e-53 | 172 |
| MS.gene81949.t1 | MTR_8g099730 | 38.017 | 242 | 143 | 3 | 3 | 238 | 16 | 256 | 4.20e-52 | 170 |
| MS.gene81949.t1 | MTR_7g007490 | 40.948 | 232 | 131 | 4 | 6 | 234 | 11 | 239 | 2.30e-49 | 162 |
| MS.gene81949.t1 | MTR_6g007623 | 42.534 | 221 | 120 | 4 | 9 | 222 | 9 | 229 | 2.59e-48 | 159 |
| MS.gene81949.t1 | MTR_5g092600 | 41.202 | 233 | 127 | 5 | 6 | 233 | 11 | 238 | 2.79e-48 | 160 |
| MS.gene81949.t1 | MTR_2g436310 | 41.597 | 238 | 133 | 4 | 9 | 244 | 9 | 242 | 6.60e-47 | 156 |
| MS.gene81949.t1 | MTR_6g007637 | 42.791 | 215 | 119 | 4 | 2 | 213 | 6 | 219 | 1.10e-46 | 155 |
| MS.gene81949.t1 | MTR_5g067530 | 39.189 | 222 | 126 | 4 | 2 | 220 | 7 | 222 | 1.33e-43 | 148 |
| MS.gene81949.t1 | MTR_8g096310 | 34.498 | 229 | 144 | 3 | 2 | 227 | 6 | 231 | 1.10e-41 | 144 |
| MS.gene81949.t1 | MTR_4g106990 | 41.624 | 197 | 114 | 1 | 26 | 221 | 36 | 232 | 1.80e-40 | 139 |
| MS.gene81949.t1 | MTR_3g098910 | 36.111 | 216 | 134 | 3 | 8 | 221 | 12 | 225 | 1.83e-40 | 141 |
| MS.gene81949.t1 | MTR_8g096320 | 35.242 | 227 | 141 | 4 | 7 | 231 | 11 | 233 | 4.85e-39 | 136 |
| MS.gene81949.t1 | MTR_8g099730 | 36.702 | 188 | 112 | 3 | 57 | 238 | 6 | 192 | 1.37e-37 | 130 |
| MS.gene81949.t1 | MTR_2g007890 | 36.986 | 219 | 129 | 4 | 8 | 222 | 15 | 228 | 2.08e-37 | 133 |
| MS.gene81949.t1 | MTR_7g405730 | 39.512 | 205 | 121 | 2 | 8 | 211 | 12 | 214 | 3.26e-37 | 132 |
| MS.gene81949.t1 | MTR_7g405710 | 36.667 | 240 | 145 | 4 | 8 | 242 | 12 | 249 | 4.12e-37 | 132 |
| MS.gene81949.t1 | MTR_3g098930 | 36.957 | 184 | 115 | 1 | 7 | 190 | 12 | 194 | 1.19e-32 | 118 |
| MS.gene81949.t1 | MTR_6g007610 | 35.193 | 233 | 129 | 6 | 9 | 226 | 12 | 237 | 2.12e-30 | 113 |
| MS.gene81949.t1 | MTR_8g096320 | 35.185 | 162 | 102 | 2 | 71 | 231 | 19 | 178 | 4.20e-28 | 106 |
| MS.gene81949.t1 | MTR_6g034600 | 41.489 | 94 | 51 | 1 | 106 | 199 | 3 | 92 | 1.33e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81949.t1 | AT1G21460 | 69.106 | 246 | 73 | 1 | 1 | 246 | 1 | 243 | 4.60e-121 | 345 |
| MS.gene81949.t1 | AT1G21460 | 75.263 | 190 | 47 | 0 | 1 | 190 | 1 | 190 | 9.43e-101 | 291 |
| MS.gene81949.t1 | AT5G53190 | 44.255 | 235 | 128 | 2 | 2 | 233 | 3 | 237 | 2.02e-64 | 201 |
| MS.gene81949.t1 | AT3G14770 | 45.815 | 227 | 111 | 2 | 2 | 228 | 15 | 229 | 5.68e-55 | 176 |
| MS.gene81949.t1 | AT4G15920 | 43.348 | 233 | 124 | 5 | 1 | 228 | 1 | 230 | 6.33e-54 | 174 |
| MS.gene81949.t1 | AT5G62850 | 40.435 | 230 | 132 | 3 | 4 | 230 | 7 | 234 | 1.94e-53 | 173 |
| MS.gene81949.t1 | AT1G66770 | 41.631 | 233 | 127 | 4 | 1 | 230 | 6 | 232 | 2.03e-52 | 171 |
| MS.gene81949.t1 | AT4G10850 | 39.689 | 257 | 141 | 6 | 1 | 243 | 1 | 257 | 1.24e-51 | 169 |
| MS.gene81949.t1 | AT3G16690 | 43.256 | 215 | 114 | 4 | 9 | 219 | 9 | 219 | 7.76e-50 | 163 |
| MS.gene81949.t1 | AT3G16690 | 42.857 | 224 | 118 | 5 | 2 | 219 | 35 | 254 | 1.09e-49 | 164 |
| MS.gene81949.t1 | AT3G28007 | 46.667 | 210 | 109 | 3 | 2 | 209 | 5 | 213 | 5.46e-49 | 162 |
| MS.gene81949.t1 | AT5G40260 | 38.496 | 226 | 133 | 5 | 5 | 225 | 8 | 232 | 3.00e-45 | 152 |
| MS.gene81949.t1 | AT5G50790 | 40.291 | 206 | 118 | 3 | 7 | 210 | 11 | 213 | 1.11e-43 | 149 |
| MS.gene81949.t1 | AT4G25010 | 38.462 | 234 | 137 | 4 | 2 | 229 | 6 | 238 | 1.31e-43 | 149 |
| MS.gene81949.t1 | AT5G50800 | 37.339 | 233 | 138 | 3 | 7 | 238 | 11 | 236 | 1.33e-43 | 149 |
| MS.gene81949.t1 | AT5G62850 | 42.105 | 190 | 105 | 3 | 4 | 190 | 7 | 194 | 4.86e-43 | 145 |
| MS.gene81949.t1 | AT5G13170 | 35.319 | 235 | 137 | 5 | 7 | 239 | 13 | 234 | 8.50e-41 | 142 |
| MS.gene81949.t1 | AT2G39060 | 37.273 | 220 | 132 | 3 | 7 | 225 | 11 | 225 | 1.25e-39 | 138 |
| MS.gene81949.t1 | AT5G23660 | 38.261 | 230 | 133 | 3 | 7 | 229 | 13 | 240 | 1.28e-39 | 139 |
| MS.gene81949.t1 | AT3G48740 | 38.462 | 208 | 125 | 2 | 7 | 213 | 13 | 218 | 8.48e-38 | 134 |
| MS.gene81949.t1 | AT5G40260 | 38.776 | 196 | 114 | 5 | 4 | 194 | 7 | 201 | 1.32e-36 | 129 |
| MS.gene81949.t1 | AT3G16690 | 41.958 | 143 | 75 | 4 | 9 | 147 | 9 | 147 | 9.14e-24 | 95.1 |
Find 58 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGCTTTGTTCCTCTTCT+TGG | 0.090747 | 3.2:-76188686 | MS.gene81949:CDS |
| TAATGGTCTTGGTTCTGTTT+TGG | 0.179490 | 3.2:-76187078 | MS.gene81949:CDS |
| CATAAGATTGTTTCATTTGA+TGG | 0.195549 | 3.2:+76186949 | None:intergenic |
| TCCATTGATTCCTCTTCTAT+TGG | 0.234330 | 3.2:+76186990 | None:intergenic |
| TGTTTCTTTGCGGCACTTCA+TGG | 0.258501 | 3.2:-76187247 | MS.gene81949:CDS |
| TGGTTCTCCACTCTCAATTA+TGG | 0.317369 | 3.2:-76187513 | MS.gene81949:intron |
| CATCAAATGAAACAATCTTA+TGG | 0.323589 | 3.2:-76186948 | MS.gene81949:CDS |
| ATACCGGTAACAACAGTAAA+TGG | 0.331981 | 3.2:-76187740 | MS.gene81949:CDS |
| GGCACTTCATGGTTTATATT+CGG | 0.336382 | 3.2:-76187236 | MS.gene81949:CDS |
| GTCTCCCTCTTTGCCTTCCA+TGG | 0.339060 | 3.2:-76187593 | MS.gene81949:CDS |
| CAGAGAGTACCAAGGTGAAT+AGG | 0.345094 | 3.2:+76187636 | None:intergenic |
| GTGCCATTTACTGTTGTTAC+CGG | 0.352062 | 3.2:+76187737 | None:intergenic |
| TTGCCTTCCATGGCAATCAT+AGG | 0.381587 | 3.2:-76187583 | MS.gene81949:CDS |
| CATCATATTTGCACCTAAGA+AGG | 0.399786 | 3.2:-76187678 | MS.gene81949:CDS |
| TCGCTGTTTGTGTTTCTTTG+CGG | 0.403722 | 3.2:-76187257 | MS.gene81949:CDS |
| TTTCAGGTACCTAATGGTCT+TGG | 0.407841 | 3.2:-76187089 | MS.gene81949:intron |
| ACAGTAAATGGCACCGGAGC+AGG | 0.416818 | 3.2:-76187728 | MS.gene81949:CDS |
| AAAACAGAACCAAGACCATT+AGG | 0.423220 | 3.2:+76187080 | None:intergenic |
| AGAGAGTACCAAGGTGAATA+GGG | 0.429404 | 3.2:+76187637 | None:intergenic |
| TCAATTGTCTCCTTTCTGCT+TGG | 0.435363 | 3.2:-76188271 | MS.gene81949:intron |
| GGCCTTCTGCGGCTTTGCCA+TGG | 0.453114 | 3.2:-76187558 | MS.gene81949:CDS |
| TTGAGCAGTGTCATAACATA+TGG | 0.464848 | 3.2:+76188290 | None:intergenic |
| TGGCATGAACTCCACACTCT+TGG | 0.469786 | 3.2:+76187289 | None:intergenic |
| TGTTGTTACCGGTATGTTGT+TGG | 0.472054 | 3.2:+76187748 | None:intergenic |
| ACTAACTTACAGCAACAAAT+AGG | 0.474521 | 3.2:+76187198 | None:intergenic |
| GTTGTTACCGGTATGTTGTT+GGG | 0.478397 | 3.2:+76187749 | None:intergenic |
| GAATCAATGGAGATGGGTAA+TGG | 0.480093 | 3.2:-76186978 | MS.gene81949:CDS |
| TCTTATGGAAATGAAATTCA+AGG | 0.481566 | 3.2:-76186933 | MS.gene81949:CDS |
| TGGTTTATATTCGGTCTGCT+AGG | 0.486467 | 3.2:-76187227 | MS.gene81949:CDS |
| AGAAGAGGAATCAATGGAGA+TGG | 0.498039 | 3.2:-76186985 | MS.gene81949:CDS |
| TTGAAATACCTTTGTTGTCA+CGG | 0.503687 | 3.2:+76187024 | None:intergenic |
| TATGATTTCAATCCCTGCTC+CGG | 0.531246 | 3.2:+76187715 | None:intergenic |
| GAAGAGGAATCAATGGAGAT+GGG | 0.533130 | 3.2:-76186984 | MS.gene81949:CDS |
| ACAAACAGCGACAAGAAGAA+TGG | 0.536626 | 3.2:+76187269 | None:intergenic |
| ACCAATAGAAGAGGAATCAA+TGG | 0.540561 | 3.2:-76186991 | MS.gene81949:CDS |
| AGCTAGCTCACCAAGCAGAA+AGG | 0.551179 | 3.2:+76188261 | None:intergenic |
| TGTATAGGATTACATTCAAG+AGG | 0.558431 | 3.2:-76188352 | MS.gene81949:intron |
| AGCCATGGCAAAGCCGCAGA+AGG | 0.563128 | 3.2:+76187556 | None:intergenic |
| AATCTTTGCCCTATTCACCT+TGG | 0.568689 | 3.2:-76187645 | MS.gene81949:CDS |
| TGTGTCTCCCAACAACATAC+CGG | 0.568736 | 3.2:-76187756 | MS.gene81949:CDS |
| AGGCCTTCCTATGATTGCCA+TGG | 0.573899 | 3.2:+76187576 | None:intergenic |
| CTTCCTATGATTGCCATGGA+AGG | 0.577952 | 3.2:+76187580 | None:intergenic |
| CATACACAGGTGCCAAGAAG+AGG | 0.580321 | 3.2:+76188674 | None:intergenic |
| CAGTAAATGGCACCGGAGCA+GGG | 0.585691 | 3.2:-76187727 | MS.gene81949:CDS |
| TGGCTTACCATAATTGAGAG+TGG | 0.590723 | 3.2:+76187506 | None:intergenic |
| AAATCAGGCACCAATAGAAG+AGG | 0.597578 | 3.2:-76187000 | MS.gene81949:CDS |
| ATTGCCATGGAAGGCAAAGA+GGG | 0.598863 | 3.2:+76187589 | None:intergenic |
| GATTGCCATGGAAGGCAAAG+AGG | 0.600562 | 3.2:+76187588 | None:intergenic |
| GTAACAACAGTAAATGGCAC+CGG | 0.604393 | 3.2:-76187734 | MS.gene81949:CDS |
| ATGTTGTTGGGAGACACAAA+AGG | 0.620611 | 3.2:+76187761 | None:intergenic |
| CTTCCATGGCAATCATAGGA+AGG | 0.627717 | 3.2:-76187579 | MS.gene81949:CDS |
| TTCATATACCGTGACAACAA+AGG | 0.632876 | 3.2:-76187032 | MS.gene81949:CDS |
| AGTGATCAAAACCAAGAGTG+TGG | 0.637618 | 3.2:-76187300 | MS.gene81949:CDS |
| TGGAGAACCATACATGATGA+CGG | 0.640731 | 3.2:+76187526 | None:intergenic |
| GATGACGGAAAATATAGCCA+TGG | 0.659780 | 3.2:+76187541 | None:intergenic |
| AATCATAGGAAGGCCTTCTG+CGG | 0.681842 | 3.2:-76187569 | MS.gene81949:CDS |
| TATGCCTGAAAATTTCTCTG+TGG | 0.709244 | 3.2:+76188313 | None:intergenic |
| AGAGAACACAGAGAGTACCA+AGG | 0.729090 | 3.2:+76187628 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACTTAAATATATTTATAAG+TGG | + | chr3.2:76187307-76187326 | None:intergenic | 15.0% |
| !! | AATTTCAAATCCACAATAAA+TGG | + | chr3.2:76188417-76188436 | None:intergenic | 20.0% |
| !! | CTAGTATATGTCATTAATAT+TGG | + | chr3.2:76188358-76188377 | None:intergenic | 20.0% |
| !! | GGTCTTAAATATAAGTAAAA+AGG | - | chr3.2:76188581-76188600 | MS.gene81949:intron | 20.0% |
| !! | TTAAAAGCAAAAATATACCA+AGG | + | chr3.2:76187835-76187854 | None:intergenic | 20.0% |
| !! | TTTAATTGGAATATTTCGAA+AGG | - | chr3.2:76187869-76187888 | MS.gene81949:intron | 20.0% |
| !!! | AACATTTTACCATACAAAAT+TGG | + | chr3.2:76187591-76187610 | None:intergenic | 20.0% |
| !!! | CTCTTTTCTTATTTATTTTC+TGG | - | chr3.2:76187195-76187214 | MS.gene81949:intron | 20.0% |
| ! | AAGTTAATTACACCATATGA+TGG | + | chr3.2:76187646-76187665 | None:intergenic | 25.0% |
| ! | AATCCTATACAAAACTCAAT+TGG | + | chr3.2:76187389-76187408 | None:intergenic | 25.0% |
| ! | AATTATGGTAAGCCAATTTA+CGG | - | chr3.2:76188252-76188271 | MS.gene81949:intron | 25.0% |
| ! | CATAAGATTGTTTCATTTGA+TGG | + | chr3.2:76188804-76188823 | None:intergenic | 25.0% |
| ! | CATCAAATGAAACAATCTTA+TGG | - | chr3.2:76188802-76188821 | MS.gene81949:intron | 25.0% |
| ! | TCTTATGGAAATGAAATTCA+AGG | - | chr3.2:76188817-76188836 | MS.gene81949:CDS | 25.0% |
| !! | TATGGTAAAATGTTGCTATT+TGG | - | chr3.2:76187597-76187616 | MS.gene81949:CDS | 25.0% |
| !! | TTTTACCATACAAAATTGGA+AGG | + | chr3.2:76187587-76187606 | None:intergenic | 25.0% |
| !!! | AGGGAATTTTATTACTTTTC+AGG | - | chr3.2:76188645-76188664 | MS.gene81949:intron | 25.0% |
| !!! | ATTTTGATCTTTTCCTTCTT+AGG | + | chr3.2:76188088-76188107 | None:intergenic | 25.0% |
| !!! | CAAAGGTATTTCAAAAAATC+AGG | - | chr3.2:76188735-76188754 | MS.gene81949:intron | 25.0% |
| !!! | GTTTTATTTAATGTGAGACT+TGG | - | chr3.2:76187330-76187349 | MS.gene81949:intron | 25.0% |
| !!! | TATTGGACTTCTGAAAATTT+TGG | + | chr3.2:76188341-76188360 | None:intergenic | 25.0% |
| !!! | TCTTATTTATTTTCTGGTTC+CGG | - | chr3.2:76187201-76187220 | MS.gene81949:intron | 25.0% |
| !!! | TTAGTGCATTCAGTTTTAAT+TGG | - | chr3.2:76187855-76187874 | MS.gene81949:intron | 25.0% |
| ACTAACTTACAGCAACAAAT+AGG | + | chr3.2:76188555-76188574 | None:intergenic | 30.0% | |
| CAAGAACAAACTCATTGTAA+GGG | - | chr3.2:76188626-76188645 | MS.gene81949:intron | 30.0% | |
| CTTTAATAGGAACAAAACCT+TGG | - | chr3.2:76187815-76187834 | MS.gene81949:intron | 30.0% | |
| TCAAGAACAAACTCATTGTA+AGG | - | chr3.2:76188625-76188644 | MS.gene81949:intron | 30.0% | |
| TGAACATGACTGTCTTTAAT+AGG | - | chr3.2:76187802-76187821 | MS.gene81949:intron | 30.0% | |
| TGTATAGGATTACATTCAAG+AGG | - | chr3.2:76187398-76187417 | MS.gene81949:intron | 30.0% | |
| ! | AAATCCACAGAGAAATTTTC+AGG | - | chr3.2:76187433-76187452 | MS.gene81949:intron | 30.0% |
| ! | ATATTTTCCGTCATCATGTA+TGG | - | chr3.2:76188217-76188236 | MS.gene81949:intron | 30.0% |
| ! | CTTTTATGGTTAAACCTTAG+AGG | - | chr3.2:76187713-76187732 | MS.gene81949:CDS | 30.0% |
| ! | TACATGCATAGCATCTTTTA+TGG | - | chr3.2:76187699-76187718 | MS.gene81949:CDS | 30.0% |
| ! | TACTTATATTTAAGACCGAG+TGG | + | chr3.2:76188578-76188597 | None:intergenic | 30.0% |
| ! | TTGAAATACCTTTGTTGTCA+CGG | + | chr3.2:76188729-76188748 | None:intergenic | 30.0% |
| !! | CATCTTTTGTTTGGCATATT+TGG | - | chr3.2:76186941-76186960 | MS.gene81949:CDS | 30.0% |
| !! | TGACCAATTGAGTTTTGTAT+AGG | - | chr3.2:76187383-76187402 | MS.gene81949:intron | 30.0% |
| !! | TTTTGTTTGGCATATTTGGT+AGG | - | chr3.2:76186945-76186964 | MS.gene81949:CDS | 30.0% |
| !!! | AAATGGCATGTTTTGGAATT+TGG | + | chr3.2:76188400-76188419 | None:intergenic | 30.0% |
| !!! | ATTACTTTTCAGGTACCTAA+TGG | - | chr3.2:76188655-76188674 | MS.gene81949:intron | 30.0% |
| AAAACAGAACCAAGACCATT+AGG | + | chr3.2:76188673-76188692 | None:intergenic | 35.0% | |
| AAAATCGTTGTGCCGTAAAT+TGG | + | chr3.2:76188267-76188286 | None:intergenic | 35.0% | |
| ACCAATAGAAGAGGAATCAA+TGG | - | chr3.2:76188759-76188778 | MS.gene81949:intron | 35.0% | |
| ACTTGACACAAGATTTAGTG+GGG | + | chr3.2:76187550-76187569 | None:intergenic | 35.0% | |
| ATACCGGTAACAACAGTAAA+TGG | - | chr3.2:76188010-76188029 | MS.gene81949:intron | 35.0% | |
| CATCATATTTGCACCTAAGA+AGG | - | chr3.2:76188072-76188091 | MS.gene81949:intron | 35.0% | |
| GACTTGACACAAGATTTAGT+GGG | + | chr3.2:76187551-76187570 | None:intergenic | 35.0% | |
| GGCACTTCATGGTTTATATT+CGG | - | chr3.2:76188514-76188533 | MS.gene81949:intron | 35.0% | |
| TAACATAGTAGTACTAGAGC+CGG | + | chr3.2:76187223-76187242 | None:intergenic | 35.0% | |
| TATGCCTGAAAATTTCTCTG+TGG | + | chr3.2:76187440-76187459 | None:intergenic | 35.0% | |
| TGACTTGACACAAGATTTAG+TGG | + | chr3.2:76187552-76187571 | None:intergenic | 35.0% | |
| TTCATATACCGTGACAACAA+AGG | - | chr3.2:76188718-76188737 | MS.gene81949:intron | 35.0% | |
| TTGAGCAGTGTCATAACATA+TGG | + | chr3.2:76187463-76187482 | None:intergenic | 35.0% | |
| ! | ATTTATAAGTGGTGACGAGT+TGG | + | chr3.2:76187296-76187315 | None:intergenic | 35.0% |
| ! | CCAAAACATGCCATTTATTG+TGG | - | chr3.2:76188404-76188423 | MS.gene81949:intron | 35.0% |
| ! | CCACAATAAATGGCATGTTT+TGG | + | chr3.2:76188407-76188426 | None:intergenic | 35.0% |
| ! | GATGTTGCACATCTTTTGTT+TGG | - | chr3.2:76186932-76186951 | MS.gene81949:CDS | 35.0% |
| ! | TGCTTCCTTCCAATTTTGTA+TGG | - | chr3.2:76187579-76187598 | MS.gene81949:CDS | 35.0% |
| !! | TCCATTGATTCCTCTTCTAT+TGG | + | chr3.2:76188763-76188782 | None:intergenic | 35.0% |
| !! | TCTTAAATTAGAAGTGTCCG+TGG | + | chr3.2:76187144-76187163 | None:intergenic | 35.0% |
| !!! | AATGGTCTTGGTTCTGTTTT+GGG | - | chr3.2:76188673-76188692 | MS.gene81949:intron | 35.0% |
| !!! | TAATGGTCTTGGTTCTGTTT+TGG | - | chr3.2:76188672-76188691 | MS.gene81949:intron | 35.0% |
| AAATCAGGCACCAATAGAAG+AGG | - | chr3.2:76188750-76188769 | MS.gene81949:intron | 40.0% | |
| AATCTTTGCCCTATTCACCT+TGG | - | chr3.2:76188105-76188124 | MS.gene81949:intron | 40.0% | |
| ACAAACAGCGACAAGAAGAA+TGG | + | chr3.2:76188484-76188503 | None:intergenic | 40.0% | |
| AGAAGAGGAATCAATGGAGA+TGG | - | chr3.2:76188765-76188784 | MS.gene81949:intron | 40.0% | |
| AGTGATCAAAACCAAGAGTG+TGG | - | chr3.2:76188450-76188469 | MS.gene81949:intron | 40.0% | |
| ATGTTGTTGGGAGACACAAA+AGG | + | chr3.2:76187992-76188011 | None:intergenic | 40.0% | |
| CAGCCAAGTAATACATACAC+AGG | + | chr3.2:76187092-76187111 | None:intergenic | 40.0% | |
| GAAGAGGAATCAATGGAGAT+GGG | - | chr3.2:76188766-76188785 | MS.gene81949:intron | 40.0% | |
| GAAGCAAAAGGAGAAACAGT+TGG | + | chr3.2:76187624-76187643 | None:intergenic | 40.0% | |
| GAATCAATGGAGATGGGTAA+TGG | - | chr3.2:76188772-76188791 | MS.gene81949:intron | 40.0% | |
| GCAATGTGGTGAATTTAGGT+TGG | - | chr3.2:76187739-76187758 | MS.gene81949:CDS | 40.0% | |
| GCACCTGTGTATGTATTACT+TGG | - | chr3.2:76187086-76187105 | MS.gene81949:CDS | 40.0% | |
| GCATGCAATGTGGTGAATTT+AGG | - | chr3.2:76187735-76187754 | MS.gene81949:CDS | 40.0% | |
| GTAACAACAGTAAATGGCAC+CGG | - | chr3.2:76188016-76188035 | MS.gene81949:intron | 40.0% | |
| GTTGTTACCGGTATGTTGTT+GGG | + | chr3.2:76188004-76188023 | None:intergenic | 40.0% | |
| TATGATTTCAATCCCTGCTC+CGG | + | chr3.2:76188038-76188057 | None:intergenic | 40.0% | |
| TCAATTGTCTCCTTTCTGCT+TGG | - | chr3.2:76187479-76187498 | MS.gene81949:intron | 40.0% | |
| TCGCTGTTTGTGTTTCTTTG+CGG | - | chr3.2:76188493-76188512 | MS.gene81949:intron | 40.0% | |
| TCTCACAGCTTCTTCTTTGT+TGG | - | chr3.2:76187029-76187048 | MS.gene81949:CDS | 40.0% | |
| TGGAGAACCATACATGATGA+CGG | + | chr3.2:76188227-76188246 | None:intergenic | 40.0% | |
| TGGCTTACCATAATTGAGAG+TGG | + | chr3.2:76188247-76188266 | None:intergenic | 40.0% | |
| TGGTTCTCCACTCTCAATTA+TGG | - | chr3.2:76188237-76188256 | MS.gene81949:intron | 40.0% | |
| TGGTTTATATTCGGTCTGCT+AGG | - | chr3.2:76188523-76188542 | MS.gene81949:intron | 40.0% | |
| TGTTGTTACCGGTATGTTGT+TGG | + | chr3.2:76188005-76188024 | None:intergenic | 40.0% | |
| TTGCTGTAAGTTAGTCCACT+CGG | - | chr3.2:76188560-76188579 | MS.gene81949:intron | 40.0% | |
| ! | CACCATATGATGGAAGCAAA+AGG | + | chr3.2:76187636-76187655 | None:intergenic | 40.0% |
| ! | CTCCTTTTGCTTCCATCATA+TGG | - | chr3.2:76187631-76187650 | MS.gene81949:CDS | 40.0% |
| ! | TGTTTTCTCCCTGTTAACCA+CGG | - | chr3.2:76187124-76187143 | MS.gene81949:intron | 40.0% |
| ! | TTCTGCTTTGTTCCTCTTCT+TGG | - | chr3.2:76187064-76187083 | MS.gene81949:CDS | 40.0% |
| ! | TTTCAGGTACCTAATGGTCT+TGG | - | chr3.2:76188661-76188680 | MS.gene81949:intron | 40.0% |
| !! | AGAGAGTACCAAGGTGAATA+GGG | + | chr3.2:76188116-76188135 | None:intergenic | 40.0% |
| !! | AGCTTCTTCTTTGTTGGTTC+AGG | - | chr3.2:76187035-76187054 | MS.gene81949:CDS | 40.0% |
| !! | GATGACGGAAAATATAGCCA+TGG | + | chr3.2:76188212-76188231 | None:intergenic | 40.0% |
| !! | GCTTCTTCTTTGTTGGTTCA+GGG | - | chr3.2:76187036-76187055 | MS.gene81949:CDS | 40.0% |
| !! | GTGCCATTTACTGTTGTTAC+CGG | + | chr3.2:76188016-76188035 | None:intergenic | 40.0% |
| !!! | ATGGTCTTGGTTCTGTTTTG+GGG | - | chr3.2:76188674-76188693 | MS.gene81949:intron | 40.0% |
| AATCATAGGAAGGCCTTCTG+CGG | - | chr3.2:76188181-76188200 | MS.gene81949:intron | 45.0% | |
| ATTCCCAACATCCACAGGTA+CGG | - | chr3.2:76187962-76187981 | MS.gene81949:intron | 45.0% | |
| ATTGCCATGGAAGGCAAAGA+GGG | + | chr3.2:76188164-76188183 | None:intergenic | 45.0% | |
| CTTCCATGGCAATCATAGGA+AGG | - | chr3.2:76188171-76188190 | MS.gene81949:intron | 45.0% | |
| CTTCCTATGATTGCCATGGA+AGG | + | chr3.2:76188173-76188192 | None:intergenic | 45.0% | |
| TACACACACACACCTCTTCT+TGG | + | chr3.2:76187909-76187928 | None:intergenic | 45.0% | |
| TCCTTCACTAGTCCAAGAAG+AGG | - | chr3.2:76187894-76187913 | MS.gene81949:intron | 45.0% | |
| TGTGTCTCCCAACAACATAC+CGG | - | chr3.2:76187994-76188013 | MS.gene81949:intron | 45.0% | |
| TGTTTCTTTGCGGCACTTCA+TGG | - | chr3.2:76188503-76188522 | MS.gene81949:intron | 45.0% | |
| TTCTGATTCCCAACATCCAC+AGG | - | chr3.2:76187957-76187976 | MS.gene81949:intron | 45.0% | |
| TTGCCTTCCATGGCAATCAT+AGG | - | chr3.2:76188167-76188186 | MS.gene81949:intron | 45.0% | |
| ! | AACCTTAGAGGCATGCAATG+TGG | - | chr3.2:76187725-76187744 | MS.gene81949:CDS | 45.0% |
| !! | ACCTCTTCTTGGACTAGTGA+AGG | + | chr3.2:76187898-76187917 | None:intergenic | 45.0% |
| !! | AGAAGTGTCCGTGGTTAACA+GGG | + | chr3.2:76187135-76187154 | None:intergenic | 45.0% |
| !! | AGAGAACACAGAGAGTACCA+AGG | + | chr3.2:76188125-76188144 | None:intergenic | 45.0% |
| !! | CAGAGAGTACCAAGGTGAAT+AGG | + | chr3.2:76188117-76188136 | None:intergenic | 45.0% |
| !! | TAGAAGTGTCCGTGGTTAAC+AGG | + | chr3.2:76187136-76187155 | None:intergenic | 45.0% |
| AGACCGTACCTGTGGATGTT+GGG | + | chr3.2:76187968-76187987 | None:intergenic | 50.0% | |
| AGCTAGCTCACCAAGCAGAA+AGG | + | chr3.2:76187492-76187511 | None:intergenic | 50.0% | |
| AGGCCTTCCTATGATTGCCA+TGG | + | chr3.2:76188177-76188196 | None:intergenic | 50.0% | |
| CACCACATTGCATGCCTCTA+AGG | + | chr3.2:76187730-76187749 | None:intergenic | 50.0% | |
| CATACACAGGTGCCAAGAAG+AGG | + | chr3.2:76187079-76187098 | None:intergenic | 50.0% | |
| GATTGCCATGGAAGGCAAAG+AGG | + | chr3.2:76188165-76188184 | None:intergenic | 50.0% | |
| TGGCATGAACTCCACACTCT+TGG | + | chr3.2:76188464-76188483 | None:intergenic | 50.0% | |
| !!! | GTGGTGACGAGTTGGTTTTG+AGG | + | chr3.2:76187288-76187307 | None:intergenic | 50.0% |
| CAAAAGGCAGACCGTACCTG+TGG | + | chr3.2:76187976-76187995 | None:intergenic | 55.0% | |
| CAGACCGTACCTGTGGATGT+TGG | + | chr3.2:76187969-76187988 | None:intergenic | 55.0% | |
| GTCTCCCTCTTTGCCTTCCA+TGG | - | chr3.2:76188157-76188176 | MS.gene81949:intron | 55.0% | |
| ! | ACAGTAAATGGCACCGGAGC+AGG | - | chr3.2:76188022-76188041 | MS.gene81949:intron | 55.0% |
| ! | CAGTAAATGGCACCGGAGCA+GGG | - | chr3.2:76188023-76188042 | MS.gene81949:intron | 55.0% |
| AGCCATGGCAAAGCCGCAGA+AGG | + | chr3.2:76188197-76188216 | None:intergenic | 60.0% | |
| GGCCTTCTGCGGCTTTGCCA+TGG | - | chr3.2:76188192-76188211 | MS.gene81949:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 76186929 | 76188843 | 76186929 | ID=MS.gene81949 |
| chr3.2 | mRNA | 76186929 | 76188843 | 76186929 | ID=MS.gene81949.t1;Parent=MS.gene81949 |
| chr3.2 | exon | 76188810 | 76188843 | 76188810 | ID=MS.gene81949.t1.exon1;Parent=MS.gene81949.t1 |
| chr3.2 | CDS | 76188810 | 76188843 | 76188810 | ID=cds.MS.gene81949.t1;Parent=MS.gene81949.t1 |
| chr3.2 | exon | 76188679 | 76188715 | 76188679 | ID=MS.gene81949.t1.exon2;Parent=MS.gene81949.t1 |
| chr3.2 | CDS | 76188679 | 76188715 | 76188679 | ID=cds.MS.gene81949.t1;Parent=MS.gene81949.t1 |
| chr3.2 | exon | 76188272 | 76188367 | 76188272 | ID=MS.gene81949.t1.exon3;Parent=MS.gene81949.t1 |
| chr3.2 | CDS | 76188272 | 76188367 | 76188272 | ID=cds.MS.gene81949.t1;Parent=MS.gene81949.t1 |
| chr3.2 | exon | 76187514 | 76187793 | 76187514 | ID=MS.gene81949.t1.exon4;Parent=MS.gene81949.t1 |
| chr3.2 | CDS | 76187514 | 76187793 | 76187514 | ID=cds.MS.gene81949.t1;Parent=MS.gene81949.t1 |
| chr3.2 | exon | 76187208 | 76187327 | 76187208 | ID=MS.gene81949.t1.exon5;Parent=MS.gene81949.t1 |
| chr3.2 | CDS | 76187208 | 76187327 | 76187208 | ID=cds.MS.gene81949.t1;Parent=MS.gene81949.t1 |
| chr3.2 | exon | 76186929 | 76187105 | 76186929 | ID=MS.gene81949.t1.exon6;Parent=MS.gene81949.t1 |
| chr3.2 | CDS | 76186929 | 76187105 | 76186929 | ID=cds.MS.gene81949.t1;Parent=MS.gene81949.t1 |
| Gene Sequence |
| Protein sequence |
