Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52346.t1 | XP_013466427.1 | 96.8 | 188 | 5 | 1 | 8 | 194 | 57 | 244 | 1.60E-91 | 345.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52346.t1 | Q8L9J7 | 76.6 | 158 | 37 | 0 | 8 | 165 | 57 | 214 | 2.0e-63 | 243.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52346.t1 | A0A072VGC4 | 96.8 | 188 | 5 | 1 | 8 | 194 | 57 | 244 | 1.1e-91 | 345.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52346 | MS.gene026937 | PPI |
| MS.gene52346 | MS.gene70529 | PPI |
| MS.gene52346 | MS.gene46188 | PPI |
| MS.gene52346 | MS.gene048962 | PPI |
| MS.gene52346 | MS.gene25769 | PPI |
| MS.gene68896 | MS.gene52346 | PPI |
| MS.gene54644 | MS.gene52346 | PPI |
| MS.gene57091 | MS.gene52346 | PPI |
| MS.gene54672 | MS.gene52346 | PPI |
| MS.gene55828 | MS.gene52346 | PPI |
| MS.gene52346 | MS.gene79036 | PPI |
| MS.gene026933 | MS.gene52346 | PPI |
| MS.gene79035 | MS.gene52346 | PPI |
| MS.gene044269 | MS.gene52346 | PPI |
| MS.gene52346 | MS.gene026939 | PPI |
| MS.gene026935 | MS.gene52346 | PPI |
| MS.gene54638 | MS.gene52346 | PPI |
| MS.gene52388 | MS.gene52346 | PPI |
| MS.gene00279 | MS.gene52346 | PPI |
| MS.gene52346 | MS.gene026934 | PPI |
| MS.gene79032 | MS.gene52346 | PPI |
| MS.gene69746 | MS.gene52346 | PPI |
| MS.gene52346 | MS.gene54643 | PPI |
| MS.gene52346 | MS.gene004537 | PPI |
| MS.gene90281 | MS.gene52346 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52346.t1 | MTR_1g029380 | 96.809 | 188 | 5 | 1 | 8 | 194 | 57 | 244 | 2.04e-126 | 356 |
| MS.gene52346.t1 | MTR_3g089125 | 74.346 | 191 | 42 | 2 | 8 | 191 | 57 | 247 | 4.38e-97 | 282 |
| MS.gene52346.t1 | MTR_3g080990 | 44.324 | 185 | 92 | 2 | 7 | 190 | 59 | 233 | 1.41e-44 | 149 |
| MS.gene52346.t1 | MTR_8g042490 | 43.210 | 162 | 92 | 0 | 8 | 169 | 66 | 227 | 1.73e-41 | 140 |
| MS.gene52346.t1 | MTR_8g099730 | 38.983 | 177 | 107 | 1 | 7 | 182 | 5 | 181 | 5.32e-40 | 135 |
| MS.gene52346.t1 | MTR_8g099730 | 38.983 | 177 | 107 | 1 | 7 | 182 | 69 | 245 | 5.04e-39 | 134 |
| MS.gene52346.t1 | MTR_6g007633 | 42.941 | 170 | 95 | 2 | 8 | 175 | 60 | 229 | 5.08e-39 | 134 |
| MS.gene52346.t1 | MTR_2g073190 | 45.509 | 167 | 89 | 1 | 8 | 172 | 66 | 232 | 1.40e-38 | 140 |
| MS.gene52346.t1 | MTR_7g007490 | 43.713 | 167 | 89 | 3 | 12 | 175 | 64 | 228 | 1.46e-38 | 133 |
| MS.gene52346.t1 | MTR_5g092600 | 40.936 | 171 | 96 | 2 | 12 | 179 | 63 | 231 | 1.53e-37 | 130 |
| MS.gene52346.t1 | MTR_6g007623 | 41.916 | 167 | 95 | 2 | 8 | 172 | 57 | 223 | 7.77e-36 | 125 |
| MS.gene52346.t1 | MTR_6g007637 | 42.767 | 159 | 89 | 2 | 8 | 164 | 61 | 219 | 4.61e-34 | 121 |
| MS.gene52346.t1 | MTR_3g090950 | 39.785 | 186 | 99 | 3 | 8 | 190 | 58 | 233 | 1.55e-33 | 120 |
| MS.gene52346.t1 | MTR_3g090940 | 41.875 | 160 | 90 | 2 | 8 | 164 | 58 | 217 | 2.91e-33 | 119 |
| MS.gene52346.t1 | MTR_4g106990 | 42.424 | 165 | 93 | 2 | 8 | 170 | 67 | 231 | 3.62e-33 | 119 |
| MS.gene52346.t1 | MTR_1g028460 | 42.262 | 168 | 94 | 2 | 8 | 172 | 58 | 225 | 6.79e-33 | 118 |
| MS.gene52346.t1 | MTR_2g436310 | 42.675 | 157 | 89 | 1 | 19 | 174 | 66 | 222 | 3.04e-32 | 116 |
| MS.gene52346.t1 | MTR_8g096310 | 36.842 | 171 | 102 | 3 | 12 | 177 | 63 | 232 | 3.95e-31 | 114 |
| MS.gene52346.t1 | MTR_8g096320 | 36.471 | 170 | 106 | 2 | 12 | 179 | 8 | 177 | 1.08e-30 | 111 |
| MS.gene52346.t1 | MTR_8g096320 | 36.471 | 170 | 106 | 2 | 12 | 179 | 63 | 232 | 4.76e-30 | 111 |
| MS.gene52346.t1 | MTR_5g067530 | 37.143 | 175 | 107 | 2 | 12 | 185 | 64 | 236 | 9.13e-30 | 110 |
| MS.gene52346.t1 | MTR_2g007890 | 36.517 | 178 | 110 | 2 | 13 | 189 | 66 | 241 | 3.13e-29 | 110 |
| MS.gene52346.t1 | MTR_3g098910 | 38.562 | 153 | 87 | 4 | 16 | 164 | 68 | 217 | 3.23e-26 | 102 |
| MS.gene52346.t1 | MTR_7g405710 | 37.912 | 182 | 106 | 3 | 12 | 189 | 63 | 241 | 6.54e-25 | 98.2 |
| MS.gene52346.t1 | MTR_6g007610 | 37.500 | 184 | 95 | 6 | 8 | 177 | 60 | 237 | 1.82e-24 | 96.3 |
| MS.gene52346.t1 | MTR_7g405730 | 40.541 | 148 | 87 | 1 | 16 | 162 | 67 | 214 | 4.60e-24 | 95.9 |
| MS.gene52346.t1 | MTR_3g098930 | 38.400 | 125 | 77 | 0 | 17 | 141 | 70 | 194 | 8.95e-19 | 80.5 |
| MS.gene52346.t1 | MTR_6g034600 | 42.553 | 94 | 50 | 1 | 57 | 150 | 3 | 92 | 2.59e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52346.t1 | AT1G21460 | 72.254 | 173 | 46 | 1 | 8 | 178 | 57 | 229 | 1.78e-87 | 258 |
| MS.gene52346.t1 | AT1G21460 | 76.119 | 134 | 32 | 0 | 8 | 141 | 57 | 190 | 3.24e-70 | 212 |
| MS.gene52346.t1 | AT5G62850 | 44.199 | 181 | 94 | 3 | 8 | 181 | 60 | 240 | 2.88e-45 | 150 |
| MS.gene52346.t1 | AT4G10850 | 46.497 | 157 | 80 | 3 | 7 | 160 | 61 | 216 | 7.04e-39 | 134 |
| MS.gene52346.t1 | AT1G66770 | 43.827 | 162 | 88 | 3 | 7 | 165 | 61 | 222 | 4.46e-38 | 132 |
| MS.gene52346.t1 | AT5G53190 | 46.471 | 170 | 86 | 3 | 4 | 169 | 54 | 222 | 9.01e-38 | 131 |
| MS.gene52346.t1 | AT4G15920 | 41.935 | 186 | 96 | 4 | 8 | 184 | 57 | 239 | 7.01e-37 | 128 |
| MS.gene52346.t1 | AT3G16690 | 44.000 | 175 | 78 | 4 | 8 | 174 | 57 | 219 | 6.69e-36 | 125 |
| MS.gene52346.t1 | AT3G16690 | 44.000 | 175 | 78 | 4 | 8 | 174 | 92 | 254 | 1.57e-35 | 125 |
| MS.gene52346.t1 | AT5G62850 | 47.407 | 135 | 70 | 1 | 8 | 141 | 60 | 194 | 2.65e-35 | 124 |
| MS.gene52346.t1 | AT3G28007 | 47.436 | 156 | 77 | 3 | 8 | 160 | 60 | 213 | 5.24e-35 | 124 |
| MS.gene52346.t1 | AT3G14770 | 41.566 | 166 | 95 | 1 | 8 | 173 | 66 | 229 | 1.24e-33 | 120 |
| MS.gene52346.t1 | AT5G40260 | 39.444 | 180 | 103 | 5 | 8 | 182 | 60 | 238 | 1.33e-33 | 120 |
| MS.gene52346.t1 | AT4G25010 | 43.624 | 149 | 79 | 2 | 19 | 164 | 71 | 217 | 4.34e-33 | 119 |
| MS.gene52346.t1 | AT5G50800 | 40.881 | 159 | 85 | 3 | 19 | 174 | 71 | 223 | 6.36e-33 | 119 |
| MS.gene52346.t1 | AT5G50790 | 40.667 | 150 | 88 | 1 | 13 | 161 | 64 | 213 | 2.85e-30 | 112 |
| MS.gene52346.t1 | AT5G23660 | 38.690 | 168 | 98 | 2 | 16 | 182 | 69 | 232 | 1.65e-28 | 108 |
| MS.gene52346.t1 | AT2G39060 | 38.217 | 157 | 95 | 2 | 19 | 174 | 70 | 225 | 7.97e-28 | 105 |
| MS.gene52346.t1 | AT3G48740 | 37.576 | 165 | 101 | 2 | 16 | 178 | 69 | 233 | 1.13e-27 | 105 |
| MS.gene52346.t1 | AT5G13170 | 32.418 | 182 | 119 | 4 | 13 | 190 | 66 | 247 | 4.79e-26 | 101 |
| MS.gene52346.t1 | AT5G40260 | 39.735 | 151 | 85 | 5 | 8 | 153 | 60 | 209 | 2.45e-24 | 95.5 |
Find 39 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATATACCGTGGCAATAA+AGG | 0.237019 | 3.4:+1800879 | MS.gene52346:CDS |
| TTGAGTACTTACAGCAATAA+AGG | 0.270502 | 3.4:-1800665 | None:intergenic |
| ATACTTGTAACAATCATAAA+TGG | 0.288935 | 3.4:+1799670 | MS.gene52346:CDS |
| TGGTTCACCACTCTCAATTA+TGG | 0.331676 | 3.4:+1799897 | MS.gene52346:CDS |
| ACTCAAAGGGGACACGTCTT+AGG | 0.350487 | 3.4:+1800971 | MS.gene52346:CDS |
| TGAGTACTTACAGCAATAAA+GGG | 0.379246 | 3.4:-1800664 | None:intergenic |
| TCATATACCGTGGCAATAAA+GGG | 0.391647 | 3.4:+1800880 | MS.gene52346:CDS |
| CATAGTGTTTGCACCTAAGA+AGG | 0.399744 | 3.4:+1799732 | MS.gene52346:CDS |
| AAAAGAAGAAGCAATGGAAA+TGG | 0.400581 | 3.4:+1800920 | MS.gene52346:CDS |
| TTGAGTTCTCCTTCTCCCAT+TGG | 0.403157 | 3.4:-1800954 | None:intergenic |
| ATTTCTCTGTTTGCTTTGCA+TGG | 0.424862 | 3.4:+1799817 | MS.gene52346:CDS |
| TTGCTTTGCATGGTAATTCA+AGG | 0.425094 | 3.4:+1799827 | MS.gene52346:CDS |
| TATTTCTCTGTGGTACCTCA+TGG | 0.428995 | 3.4:+1800614 | MS.gene52346:CDS |
| GTAACAATCATAAATGGAAC+AGG | 0.472310 | 3.4:+1799676 | MS.gene52346:CDS |
| TGTGATTTGTAGGTACCAAA+TGG | 0.483257 | 3.4:+1800816 | MS.gene52346:intron |
| AAAGAAGAAGCAATGGAAAT+GGG | 0.488219 | 3.4:+1800921 | MS.gene52346:CDS |
| ACAAATAGTGAAAGGAAGAA+TGG | 0.498561 | 3.4:-1800592 | None:intergenic |
| TGGGAGAAGGAGAACTCAAA+GGG | 0.502157 | 3.4:+1800958 | MS.gene52346:CDS |
| ATTGTTACAAGTATGTTGTC+TGG | 0.525537 | 3.4:-1799661 | None:intergenic |
| TTGCATTCCCTTTATTGCCA+CGG | 0.536676 | 3.4:-1800887 | None:intergenic |
| ATGGGCACTGCAAAACCAAT+GGG | 0.538420 | 3.4:+1800939 | MS.gene52346:CDS |
| ACCAACAAAAGAAGAAGCAA+TGG | 0.543234 | 3.4:+1800914 | MS.gene52346:CDS |
| TCACTATTTGTATTTCTCTG+TGG | 0.547904 | 3.4:+1800604 | MS.gene52346:CDS |
| AAGGAGAAGCTGAAAATAAG+TGG | 0.553518 | 3.4:+1799751 | MS.gene52346:CDS |
| AATGGGCACTGCAAAACCAA+TGG | 0.555676 | 3.4:+1800938 | MS.gene52346:CDS |
| TTGTAGGTACCAAATGGAGT+GGG | 0.568840 | 3.4:+1800822 | MS.gene52346:intron |
| AGAGAAATACAAATAGTGAA+AGG | 0.596231 | 3.4:-1800600 | None:intergenic |
| ACTGCAAAACCAATGGGAGA+AGG | 0.607134 | 3.4:+1800945 | MS.gene52346:CDS |
| TGCAAACACTGTTATTACAA+AGG | 0.611290 | 3.4:-1799782 | None:intergenic |
| ATGGGAGAAGGAGAACTCAA+AGG | 0.612902 | 3.4:+1800957 | MS.gene52346:CDS |
| AGTGATCAAAACAAAGAGTG+TGG | 0.615735 | 3.4:+1800561 | MS.gene52346:CDS |
| TTACAGCAATAAAGGGGTCA+CGG | 0.634308 | 3.4:-1800657 | None:intergenic |
| ATGTTGTCTGGTGACACAAA+TGG | 0.639503 | 3.4:-1799649 | None:intergenic |
| AAACTTACCATAATTGAGAG+TGG | 0.640874 | 3.4:-1799904 | None:intergenic |
| TTTGTAGGTACCAAATGGAG+TGG | 0.643688 | 3.4:+1800821 | MS.gene52346:intron |
| ATATTGTATTTCATATACCG+TGG | 0.658275 | 3.4:+1800870 | MS.gene52346:CDS |
| GAGTACTTACAGCAATAAAG+GGG | 0.676810 | 3.4:-1800663 | None:intergenic |
| TGTAGGTACCAAATGGAGTG+GGG | 0.700887 | 3.4:+1800823 | MS.gene52346:intron |
| GGGAGAAGGAGAACTCAAAG+GGG | 0.753959 | 3.4:+1800959 | MS.gene52346:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTAACAAAAGAAAT+TGG | - | chr3.4:1800525-1800544 | None:intergenic | 10.0% |
| !! | TTTCATATAAACTTTATATA+TGG | + | chr3.4:1799418-1799437 | MS.gene52346:intron | 10.0% |
| !! | AAATATCAACATAAATAAGT+TGG | - | chr3.4:1800155-1800174 | None:intergenic | 15.0% |
| !! | ACCATATAGTAAAAATAATA+GGG | - | chr3.4:1799456-1799475 | None:intergenic | 15.0% |
| !! | TACCATATAGTAAAAATAAT+AGG | - | chr3.4:1799457-1799476 | None:intergenic | 15.0% |
| !! | TATATAATGTACTATGTATA+AGG | - | chr3.4:1800468-1800487 | None:intergenic | 15.0% |
| !! | TATATACATGAAAAAAGATA+AGG | - | chr3.4:1800017-1800036 | None:intergenic | 15.0% |
| !! | AAAAAATGAAGAAAATCACA+TGG | - | chr3.4:1799349-1799368 | None:intergenic | 20.0% |
| !! | AAAAATGAAGAAAATCACAT+GGG | - | chr3.4:1799348-1799367 | None:intergenic | 20.0% |
| !! | ACTATCAAATATCCTAATTA+AGG | - | chr3.4:1800058-1800077 | None:intergenic | 20.0% |
| !! | ATACTTGTAACAATCATAAA+TGG | + | chr3.4:1799670-1799689 | MS.gene52346:CDS | 20.0% |
| !! | TAAATAACCAAAACAGATAA+AGG | - | chr3.4:1800327-1800346 | None:intergenic | 20.0% |
| !! | TATGAAATTAATCATCGAAA+CGG | + | chr3.4:1800121-1800140 | MS.gene52346:intron | 20.0% |
| !! | TGAAAACAATGATTAACAAA+AGG | - | chr3.4:1800355-1800374 | None:intergenic | 20.0% |
| !! | TGAAATTTAACATATGAACT+AGG | + | chr3.4:1800710-1800729 | MS.gene52346:intron | 20.0% |
| !!! | ACCCTATTATTTTTACTATA+TGG | + | chr3.4:1799452-1799471 | MS.gene52346:intron | 20.0% |
| !!! | ATATTTTAAACTGCTTTACA+AGG | + | chr3.4:1800169-1800188 | MS.gene52346:intron | 20.0% |
| !!! | GAAAATGTTCATTTAATTTC+TGG | + | chr3.4:1799563-1799582 | MS.gene52346:intron | 20.0% |
| ! | AATAGTTAACCACCTTAATT+AGG | + | chr3.4:1800043-1800062 | MS.gene52346:intron | 25.0% |
| ! | AGAGAAATACAAATAGTGAA+AGG | - | chr3.4:1800603-1800622 | None:intergenic | 25.0% |
| ! | ATATTGTATTTCATATACCG+TGG | + | chr3.4:1800870-1800889 | MS.gene52346:CDS | 25.0% |
| ! | ATCAAATATCCTAATTAAGG+TGG | - | chr3.4:1800055-1800074 | None:intergenic | 25.0% |
| ! | ATGAAAATGATGCAAAACAA+AGG | - | chr3.4:1799404-1799423 | None:intergenic | 25.0% |
| ! | TAAATTCTAACGACAAGATA+AGG | - | chr3.4:1799974-1799993 | None:intergenic | 25.0% |
| ! | TGAAAATGATGCAAAACAAA+GGG | - | chr3.4:1799403-1799422 | None:intergenic | 25.0% |
| ! | TGGATTTAATAGGTCAAAAA+AGG | - | chr3.4:1800281-1800300 | None:intergenic | 25.0% |
| ! | TTCAATTGAATTGAATGTGA+AGG | - | chr3.4:1799528-1799547 | None:intergenic | 25.0% |
| ! | TTCGATGATTAATTTCATAG+CGG | - | chr3.4:1800120-1800139 | None:intergenic | 25.0% |
| ! | TTTAAAAGTGAATGATCATG+TGG | - | chr3.4:1800392-1800411 | None:intergenic | 25.0% |
| !! | GAGTATATGTAACAATTTTC+AGG | + | chr3.4:1799617-1799636 | MS.gene52346:intron | 25.0% |
| !! | GTATTTTCAATCATCATGTA+TGG | + | chr3.4:1799877-1799896 | MS.gene52346:CDS | 25.0% |
| !! | TCCTAAATGAATTTTGTGTA+GGG | - | chr3.4:1800439-1800458 | None:intergenic | 25.0% |
| !! | TTCCTAAATGAATTTTGTGT+AGG | - | chr3.4:1800440-1800459 | None:intergenic | 25.0% |
| !!! | GTGATTTTCTTCATTTTTTG+TGG | + | chr3.4:1799350-1799369 | MS.gene52346:intron | 25.0% |
| !!! | TATGTAACAATTTTCAGGTA+TGG | + | chr3.4:1799622-1799641 | MS.gene52346:intron | 25.0% |
| AAAAGAAGAAGCAATGGAAA+TGG | + | chr3.4:1800920-1800939 | MS.gene52346:CDS | 30.0% | |
| AAACTTACCATAATTGAGAG+TGG | - | chr3.4:1799907-1799926 | None:intergenic | 30.0% | |
| AAAGAAGAAGCAATGGAAAT+GGG | + | chr3.4:1800921-1800940 | MS.gene52346:CDS | 30.0% | |
| ACAAATAGTGAAAGGAAGAA+TGG | - | chr3.4:1800595-1800614 | None:intergenic | 30.0% | |
| ACCCTACACAAAATTCATTT+AGG | + | chr3.4:1800435-1800454 | MS.gene52346:intron | 30.0% | |
| AGGAATAATGAAATGACATG+TGG | + | chr3.4:1800730-1800749 | MS.gene52346:intron | 30.0% | |
| ATTGCCAAATACAATGCAAA+TGG | - | chr3.4:1800769-1800788 | None:intergenic | 30.0% | |
| ATTGTTACAAGTATGTTGTC+TGG | - | chr3.4:1799664-1799683 | None:intergenic | 30.0% | |
| GGAAAAAGATTTCATGCATT+AGG | - | chr3.4:1800260-1800279 | None:intergenic | 30.0% | |
| GTAACAATCATAAATGGAAC+AGG | + | chr3.4:1799676-1799695 | MS.gene52346:CDS | 30.0% | |
| TCACTATTTGTATTTCTCTG+TGG | + | chr3.4:1800604-1800623 | MS.gene52346:CDS | 30.0% | |
| TGAGTACTTACAGCAATAAA+GGG | - | chr3.4:1800667-1800686 | None:intergenic | 30.0% | |
| TGCAAACACTGTTATTACAA+AGG | - | chr3.4:1799785-1799804 | None:intergenic | 30.0% | |
| TGTACCATTTGCATTGTATT+TGG | + | chr3.4:1800762-1800781 | MS.gene52346:intron | 30.0% | |
| TTGAGTACTTACAGCAATAA+AGG | - | chr3.4:1800668-1800687 | None:intergenic | 30.0% | |
| ! | ATGATAGTGACAAAATGATG+AGG | + | chr3.4:1800787-1800806 | MS.gene52346:intron | 30.0% |
| !!! | AATTCAAGGAAAGTGTTTTG+TGG | + | chr3.4:1799841-1799860 | MS.gene52346:CDS | 30.0% |
| !!! | TGGTTCATTTTTGGTCTATT+AGG | + | chr3.4:1800634-1800653 | MS.gene52346:CDS | 30.0% |
| AAGGAGAAGCTGAAAATAAG+TGG | + | chr3.4:1799751-1799770 | MS.gene52346:CDS | 35.0% | |
| ACCAACAAAAGAAGAAGCAA+TGG | + | chr3.4:1800914-1800933 | MS.gene52346:CDS | 35.0% | |
| AGTGATCAAAACAAAGAGTG+TGG | + | chr3.4:1800561-1800580 | MS.gene52346:CDS | 35.0% | |
| ATTTCTCTGTTTGCTTTGCA+TGG | + | chr3.4:1799817-1799836 | MS.gene52346:CDS | 35.0% | |
| CAGATAAAGGACAACAGAAA+AGG | - | chr3.4:1800314-1800333 | None:intergenic | 35.0% | |
| CTAACGACAAGATAAGGATA+AGG | - | chr3.4:1799968-1799987 | None:intergenic | 35.0% | |
| CTTGTGGATCTGGATTTAAT+AGG | - | chr3.4:1800291-1800310 | None:intergenic | 35.0% | |
| GAGTACTTACAGCAATAAAG+GGG | - | chr3.4:1800666-1800685 | None:intergenic | 35.0% | |
| TAGACCAAAAATGAACCATG+AGG | - | chr3.4:1800632-1800651 | None:intergenic | 35.0% | |
| TCATATACCGTGGCAATAAA+GGG | + | chr3.4:1800880-1800899 | MS.gene52346:CDS | 35.0% | |
| TTCATATACCGTGGCAATAA+AGG | + | chr3.4:1800879-1800898 | MS.gene52346:CDS | 35.0% | |
| TTGCTTTGCATGGTAATTCA+AGG | + | chr3.4:1799827-1799846 | MS.gene52346:CDS | 35.0% | |
| ! | ATTTTCAGCTTCTCCTTCTT+AGG | - | chr3.4:1799748-1799767 | None:intergenic | 35.0% |
| ! | CTGTTGTCCTTTATCTGTTT+TGG | + | chr3.4:1800317-1800336 | MS.gene52346:intron | 35.0% |
| ! | TCCATTGCTTCTTCTTTTGT+TGG | - | chr3.4:1800918-1800937 | None:intergenic | 35.0% |
| ! | TGTGATTTGTAGGTACCAAA+TGG | + | chr3.4:1800816-1800835 | MS.gene52346:intron | 35.0% |
| !! | GAGGCAATTTTGTGATTTGT+AGG | + | chr3.4:1800806-1800825 | MS.gene52346:intron | 35.0% |
| AAAAATGACCCCACTCCATT+TGG | - | chr3.4:1800834-1800853 | None:intergenic | 40.0% | |
| ATGTTGTCTGGTGACACAAA+TGG | - | chr3.4:1799652-1799671 | None:intergenic | 40.0% | |
| ATTCCTTAGTCTCGAGTCTT+TGG | + | chr3.4:1800092-1800111 | MS.gene52346:intron | 40.0% | |
| CATAGTGTTTGCACCTAAGA+AGG | + | chr3.4:1799732-1799751 | MS.gene52346:CDS | 40.0% | |
| TATTTCTCTGTGGTACCTCA+TGG | + | chr3.4:1800614-1800633 | MS.gene52346:CDS | 40.0% | |
| TGGTTCACCACTCTCAATTA+TGG | + | chr3.4:1799897-1799916 | MS.gene52346:CDS | 40.0% | |
| TTACAGCAATAAAGGGGTCA+CGG | - | chr3.4:1800660-1800679 | None:intergenic | 40.0% | |
| TTGCATTCCCTTTATTGCCA+CGG | - | chr3.4:1800890-1800909 | None:intergenic | 40.0% | |
| TTGTAGGTACCAAATGGAGT+GGG | + | chr3.4:1800822-1800841 | MS.gene52346:intron | 40.0% | |
| TTTGTAGGTACCAAATGGAG+TGG | + | chr3.4:1800821-1800840 | MS.gene52346:intron | 40.0% | |
| ! | GGTACCTCATGGTTCATTTT+TGG | + | chr3.4:1800625-1800644 | MS.gene52346:CDS | 40.0% |
| !!! | AATGGAGTGGGGTCATTTTT+AGG | + | chr3.4:1800834-1800853 | MS.gene52346:CDS | 40.0% |
| !!! | ATGGAGTGGGGTCATTTTTA+GGG | + | chr3.4:1800835-1800854 | MS.gene52346:CDS | 40.0% |
| ACAGAAAAGGCTTGTGGATC+TGG | - | chr3.4:1800301-1800320 | None:intergenic | 45.0% | |
| ACTGCAAAACCAATGGGAGA+AGG | + | chr3.4:1800945-1800964 | MS.gene52346:CDS | 45.0% | |
| AGGACAACAGAAAAGGCTTG+TGG | - | chr3.4:1800307-1800326 | None:intergenic | 45.0% | |
| ATGGGAGAAGGAGAACTCAA+AGG | + | chr3.4:1800957-1800976 | MS.gene52346:CDS | 45.0% | |
| GATCCAAAGACTCGAGACTA+AGG | - | chr3.4:1800098-1800117 | None:intergenic | 45.0% | |
| TGGGAGAAGGAGAACTCAAA+GGG | + | chr3.4:1800958-1800977 | MS.gene52346:CDS | 45.0% | |
| TGTAGGTACCAAATGGAGTG+GGG | + | chr3.4:1800823-1800842 | MS.gene52346:intron | 45.0% | |
| TTGAGTTCTCCTTCTCCCAT+TGG | - | chr3.4:1800957-1800976 | None:intergenic | 45.0% | |
| ! | AATGGGCACTGCAAAACCAA+TGG | + | chr3.4:1800938-1800957 | MS.gene52346:CDS | 45.0% |
| ! | ATGGGCACTGCAAAACCAAT+GGG | + | chr3.4:1800939-1800958 | MS.gene52346:CDS | 45.0% |
| GGGAGAAGGAGAACTCAAAG+GGG | + | chr3.4:1800959-1800978 | MS.gene52346:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 1799330 | 1800992 | 1799330 | ID=MS.gene52346 |
| chr3.4 | mRNA | 1799330 | 1800992 | 1799330 | ID=MS.gene52346.t1;Parent=MS.gene52346 |
| chr3.4 | exon | 1799330 | 1799349 | 1799330 | ID=MS.gene52346.t1.exon1;Parent=MS.gene52346.t1 |
| chr3.4 | CDS | 1799330 | 1799349 | 1799330 | ID=cds.MS.gene52346.t1;Parent=MS.gene52346.t1 |
| chr3.4 | exon | 1799639 | 1799918 | 1799639 | ID=MS.gene52346.t1.exon2;Parent=MS.gene52346.t1 |
| chr3.4 | CDS | 1799639 | 1799918 | 1799639 | ID=cds.MS.gene52346.t1;Parent=MS.gene52346.t1 |
| chr3.4 | exon | 1800556 | 1800675 | 1800556 | ID=MS.gene52346.t1.exon3;Parent=MS.gene52346.t1 |
| chr3.4 | CDS | 1800556 | 1800675 | 1800556 | ID=cds.MS.gene52346.t1;Parent=MS.gene52346.t1 |
| chr3.4 | exon | 1800828 | 1800992 | 1800828 | ID=MS.gene52346.t1.exon4;Parent=MS.gene52346.t1 |
| chr3.4 | CDS | 1800828 | 1800992 | 1800828 | ID=cds.MS.gene52346.t1;Parent=MS.gene52346.t1 |
| Gene Sequence |
| Protein sequence |
