Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31850.t1 | XP_013466427.1 | 96.7 | 244 | 7 | 1 | 1 | 243 | 1 | 244 | 5.20E-124 | 453.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31850.t1 | Q8L9J7 | 78.5 | 214 | 46 | 0 | 1 | 214 | 1 | 214 | 2.2e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31850.t1 | A0A072VGC4 | 96.7 | 244 | 7 | 1 | 1 | 243 | 1 | 244 | 3.7e-124 | 453.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026933 | MS.gene31850 | PPI |
| MS.gene79035 | MS.gene31850 | PPI |
| MS.gene026935 | MS.gene31850 | PPI |
| MS.gene54672 | MS.gene31850 | PPI |
| MS.gene55828 | MS.gene31850 | PPI |
| MS.gene31850 | MS.gene79036 | PPI |
| MS.gene31850 | MS.gene026934 | PPI |
| MS.gene31850 | MS.gene54643 | PPI |
| MS.gene044269 | MS.gene31850 | PPI |
| MS.gene31850 | MS.gene026939 | PPI |
| MS.gene54638 | MS.gene31850 | PPI |
| MS.gene00279 | MS.gene31850 | PPI |
| MS.gene90281 | MS.gene31850 | PPI |
| MS.gene79032 | MS.gene31850 | PPI |
| MS.gene69746 | MS.gene31850 | PPI |
| MS.gene31850 | MS.gene026937 | PPI |
| MS.gene31850 | MS.gene70529 | PPI |
| MS.gene31850 | MS.gene46188 | PPI |
| MS.gene31850 | MS.gene048962 | PPI |
| MS.gene31850 | MS.gene004537 | PPI |
| MS.gene68896 | MS.gene31850 | PPI |
| MS.gene54644 | MS.gene31850 | PPI |
| MS.gene31850 | MS.gene52388 | PPI |
| MS.gene57091 | MS.gene31850 | PPI |
| MS.gene31850 | MS.gene25769 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31850.t1 | MTR_1g029380 | 96.721 | 244 | 7 | 1 | 1 | 243 | 1 | 244 | 1.25e-168 | 465 |
| MS.gene31850.t1 | MTR_3g089125 | 75.709 | 247 | 53 | 2 | 1 | 240 | 1 | 247 | 1.30e-132 | 374 |
| MS.gene31850.t1 | MTR_8g042490 | 46.190 | 210 | 113 | 0 | 9 | 218 | 18 | 227 | 7.54e-62 | 194 |
| MS.gene31850.t1 | MTR_3g080990 | 43.096 | 239 | 125 | 2 | 2 | 239 | 5 | 233 | 1.65e-58 | 186 |
| MS.gene31850.t1 | MTR_2g073190 | 47.297 | 222 | 115 | 1 | 2 | 221 | 11 | 232 | 2.34e-58 | 196 |
| MS.gene31850.t1 | MTR_8g099730 | 40.693 | 231 | 136 | 1 | 2 | 231 | 15 | 245 | 2.60e-54 | 175 |
| MS.gene31850.t1 | MTR_3g090940 | 43.304 | 224 | 122 | 3 | 9 | 229 | 10 | 231 | 6.66e-54 | 174 |
| MS.gene31850.t1 | MTR_1g028460 | 44.954 | 218 | 117 | 2 | 9 | 223 | 10 | 227 | 7.59e-54 | 174 |
| MS.gene31850.t1 | MTR_3g090950 | 42.735 | 234 | 121 | 3 | 9 | 239 | 10 | 233 | 8.45e-54 | 174 |
| MS.gene31850.t1 | MTR_6g007633 | 41.818 | 220 | 126 | 2 | 7 | 224 | 10 | 229 | 8.94e-51 | 166 |
| MS.gene31850.t1 | MTR_2g436310 | 43.182 | 220 | 122 | 2 | 6 | 224 | 6 | 223 | 9.25e-50 | 163 |
| MS.gene31850.t1 | MTR_7g007490 | 42.793 | 222 | 118 | 4 | 7 | 224 | 12 | 228 | 3.43e-49 | 162 |
| MS.gene31850.t1 | MTR_5g092600 | 42.453 | 212 | 115 | 3 | 20 | 228 | 24 | 231 | 1.74e-48 | 160 |
| MS.gene31850.t1 | MTR_6g007623 | 41.593 | 226 | 130 | 2 | 7 | 230 | 7 | 232 | 3.59e-48 | 159 |
| MS.gene31850.t1 | MTR_6g007637 | 42.056 | 214 | 122 | 2 | 2 | 213 | 6 | 219 | 4.92e-46 | 154 |
| MS.gene31850.t1 | MTR_5g067530 | 38.889 | 234 | 138 | 3 | 2 | 234 | 7 | 236 | 8.95e-45 | 151 |
| MS.gene31850.t1 | MTR_2g007890 | 37.395 | 238 | 140 | 4 | 5 | 238 | 9 | 241 | 5.23e-42 | 144 |
| MS.gene31850.t1 | MTR_4g106990 | 42.857 | 196 | 110 | 2 | 26 | 219 | 36 | 231 | 6.28e-42 | 143 |
| MS.gene31850.t1 | MTR_8g096320 | 36.444 | 225 | 139 | 3 | 6 | 228 | 10 | 232 | 1.33e-41 | 142 |
| MS.gene31850.t1 | MTR_8g096310 | 35.217 | 230 | 141 | 4 | 2 | 226 | 6 | 232 | 2.98e-41 | 142 |
| MS.gene31850.t1 | MTR_7g405710 | 39.024 | 246 | 137 | 5 | 1 | 238 | 1 | 241 | 5.96e-40 | 139 |
| MS.gene31850.t1 | MTR_3g098910 | 37.736 | 212 | 124 | 3 | 6 | 213 | 10 | 217 | 1.64e-39 | 139 |
| MS.gene31850.t1 | MTR_7g405730 | 41.204 | 216 | 120 | 3 | 1 | 211 | 1 | 214 | 1.65e-39 | 137 |
| MS.gene31850.t1 | MTR_8g099730 | 39.205 | 176 | 106 | 1 | 57 | 231 | 6 | 181 | 3.76e-39 | 134 |
| MS.gene31850.t1 | MTR_6g007610 | 36.134 | 238 | 132 | 6 | 3 | 226 | 6 | 237 | 1.77e-33 | 121 |
| MS.gene31850.t1 | MTR_3g098930 | 40.000 | 185 | 110 | 1 | 6 | 190 | 11 | 194 | 5.67e-33 | 119 |
| MS.gene31850.t1 | MTR_8g096320 | 36.000 | 175 | 110 | 2 | 56 | 228 | 3 | 177 | 1.25e-30 | 112 |
| MS.gene31850.t1 | MTR_6g034600 | 36.667 | 120 | 60 | 2 | 106 | 225 | 3 | 106 | 3.13e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31850.t1 | AT1G21460 | 75.546 | 229 | 54 | 1 | 1 | 227 | 1 | 229 | 9.99e-125 | 354 |
| MS.gene31850.t1 | AT1G21460 | 78.421 | 190 | 41 | 0 | 1 | 190 | 1 | 190 | 1.09e-106 | 306 |
| MS.gene31850.t1 | AT5G53190 | 46.818 | 220 | 114 | 2 | 2 | 218 | 3 | 222 | 6.09e-59 | 187 |
| MS.gene31850.t1 | AT5G62850 | 43.162 | 234 | 126 | 3 | 4 | 230 | 7 | 240 | 2.80e-58 | 185 |
| MS.gene31850.t1 | AT4G10850 | 41.129 | 248 | 140 | 4 | 1 | 243 | 6 | 252 | 5.81e-56 | 179 |
| MS.gene31850.t1 | AT3G14770 | 44.860 | 214 | 116 | 1 | 9 | 222 | 18 | 229 | 8.18e-55 | 176 |
| MS.gene31850.t1 | AT1G66770 | 43.779 | 217 | 119 | 3 | 1 | 214 | 6 | 222 | 1.70e-54 | 176 |
| MS.gene31850.t1 | AT4G15920 | 41.909 | 241 | 130 | 3 | 1 | 233 | 1 | 239 | 5.44e-53 | 171 |
| MS.gene31850.t1 | AT5G40260 | 43.304 | 224 | 121 | 5 | 5 | 223 | 8 | 230 | 6.39e-51 | 166 |
| MS.gene31850.t1 | AT3G16690 | 41.991 | 231 | 113 | 5 | 2 | 224 | 3 | 220 | 6.18e-50 | 163 |
| MS.gene31850.t1 | AT3G16690 | 41.991 | 231 | 113 | 5 | 2 | 224 | 38 | 255 | 1.05e-49 | 164 |
| MS.gene31850.t1 | AT5G62850 | 45.213 | 188 | 102 | 1 | 4 | 190 | 7 | 194 | 5.94e-48 | 157 |
| MS.gene31850.t1 | AT3G28007 | 46.667 | 210 | 107 | 3 | 3 | 209 | 6 | 213 | 8.40e-47 | 156 |
| MS.gene31850.t1 | AT5G50800 | 40.090 | 222 | 123 | 4 | 6 | 224 | 10 | 224 | 8.66e-47 | 157 |
| MS.gene31850.t1 | AT4G25010 | 41.441 | 222 | 120 | 4 | 8 | 226 | 12 | 226 | 3.11e-45 | 153 |
| MS.gene31850.t1 | AT5G13170 | 36.134 | 238 | 146 | 5 | 6 | 239 | 12 | 247 | 8.74e-45 | 152 |
| MS.gene31850.t1 | AT5G50790 | 40.000 | 205 | 120 | 2 | 7 | 210 | 11 | 213 | 8.02e-44 | 149 |
| MS.gene31850.t1 | AT5G23660 | 37.885 | 227 | 134 | 3 | 6 | 231 | 12 | 232 | 1.03e-41 | 144 |
| MS.gene31850.t1 | AT5G40260 | 43.434 | 198 | 106 | 5 | 5 | 197 | 8 | 204 | 1.34e-41 | 141 |
| MS.gene31850.t1 | AT3G48740 | 37.156 | 218 | 134 | 2 | 6 | 222 | 12 | 227 | 1.03e-39 | 139 |
| MS.gene31850.t1 | AT2G39060 | 36.530 | 219 | 135 | 3 | 6 | 223 | 10 | 225 | 9.09e-38 | 133 |
| MS.gene31850.t1 | AT3G16690 | 40.260 | 154 | 75 | 4 | 2 | 147 | 3 | 147 | 1.46e-24 | 97.1 |
Find 46 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTGTCTTCTTTCTTCT+TGG | 0.170147 | 1.4:+14403631 | MS.gene31850:CDS |
| TTCATATACCGTGGCAATAA+AGG | 0.237019 | 1.4:+14408098 | MS.gene31850:CDS |
| TTGAGTACTTACAGCAATAA+AGG | 0.270502 | 1.4:-14407884 | None:intergenic |
| TGTGATGCAGGAAATGCTTT+TGG | 0.276631 | 1.4:+14403381 | MS.gene31850:intron |
| ATACTTGTAACAATCATAAA+TGG | 0.288935 | 1.4:+14403965 | MS.gene31850:CDS |
| AAAAGAAGAATCAATGGAAA+TGG | 0.329293 | 1.4:+14408139 | MS.gene31850:CDS |
| TGGTTCACCACTCTCAATTA+TGG | 0.331676 | 1.4:+14404192 | MS.gene31850:CDS |
| AGACAGTTGAGAAGTGTCAT+AGG | 0.343405 | 1.4:-14403618 | None:intergenic |
| TTGGAGCCAAGAAGAGAAAA+AGG | 0.355062 | 1.4:-14403404 | None:intergenic |
| TGAGTACTTACAGCAATAAA+GGG | 0.379246 | 1.4:-14407883 | None:intergenic |
| TTGAGTTCCCCTTCTCCCAT+TGG | 0.385482 | 1.4:-14408173 | None:intergenic |
| TCATATACCGTGGCAATAAA+GGG | 0.391647 | 1.4:+14408099 | MS.gene31850:CDS |
| ACTCAAAGGGAACACGTCTT+AGG | 0.397334 | 1.4:+14408190 | MS.gene31850:CDS |
| CATAGTGTTTGCACCTAAGA+AGG | 0.399744 | 1.4:+14404027 | MS.gene31850:CDS |
| ATTTCTCTGTTTGCTTTGCA+TGG | 0.424862 | 1.4:+14404112 | MS.gene31850:CDS |
| TTGCTTTGCATGGTAATTCA+AGG | 0.425094 | 1.4:+14404122 | MS.gene31850:CDS |
| TATTTCTCTGTGGTACCTCA+TGG | 0.428995 | 1.4:+14407833 | MS.gene31850:CDS |
| AAAGAAGAATCAATGGAAAT+GGG | 0.471546 | 1.4:+14408140 | MS.gene31850:CDS |
| GTAACAATCATAAATGGAAC+AGG | 0.472310 | 1.4:+14403971 | MS.gene31850:CDS |
| TGGGAGAAGGGGAACTCAAA+GGG | 0.477064 | 1.4:+14408177 | MS.gene31850:CDS |
| ACCAACAAAAGAAGAATCAA+TGG | 0.478004 | 1.4:+14408133 | MS.gene31850:CDS |
| TGTGATTTGTAGGTACCAAA+TGG | 0.483257 | 1.4:+14408035 | MS.gene31850:intron |
| ACAAATAGTGAAAGGAAGAA+TGG | 0.498561 | 1.4:-14407811 | None:intergenic |
| TTGAGAAGTGTCATAGGGTA+AGG | 0.509943 | 1.4:-14403612 | None:intergenic |
| ATTGTTACAAGTATGTTGTC+TGG | 0.525537 | 1.4:-14403956 | None:intergenic |
| CTGCAAAACCAATGGGAGAA+GGG | 0.534840 | 1.4:+14408165 | MS.gene31850:CDS |
| ACTGCAAAACCAATGGGAGA+AGG | 0.535612 | 1.4:+14408164 | MS.gene31850:CDS |
| TGCAAAACCAATGGGAGAAG+GGG | 0.538133 | 1.4:+14408166 | MS.gene31850:CDS |
| ATGGGCACTGCAAAACCAAT+GGG | 0.538420 | 1.4:+14408158 | MS.gene31850:CDS |
| TTGCATTCCCTTTATTGCCA+CGG | 0.539158 | 1.4:-14408106 | None:intergenic |
| TCACTATTTGTATTTCTCTG+TGG | 0.547904 | 1.4:+14407823 | MS.gene31850:CDS |
| ATGGGAGAAGGGGAACTCAA+AGG | 0.550234 | 1.4:+14408176 | MS.gene31850:CDS |
| AAGGAGAAGCTGAAAATAAG+TGG | 0.553518 | 1.4:+14404046 | MS.gene31850:CDS |
| AATGGGCACTGCAAAACCAA+TGG | 0.555676 | 1.4:+14408157 | MS.gene31850:CDS |
| GACAGTTGAGAAGTGTCATA+GGG | 0.555759 | 1.4:-14403617 | None:intergenic |
| TTGTAGGTACCAAATGGAGT+GGG | 0.568840 | 1.4:+14408041 | MS.gene31850:intron |
| AGAGAAATACAAATAGTGAA+AGG | 0.596231 | 1.4:-14407819 | None:intergenic |
| AGTGATCAAAACAAAGAGTG+TGG | 0.615735 | 1.4:+14407780 | MS.gene31850:CDS |
| TGCAAACACTGTTATTACAA+AGG | 0.628358 | 1.4:-14404077 | None:intergenic |
| TTACAGCAATAAAGGGGTCA+CGG | 0.634308 | 1.4:-14407876 | None:intergenic |
| ATGTTGTCTGGTGACACAAA+TGG | 0.639503 | 1.4:-14403944 | None:intergenic |
| AAACTTACCATAATTGAGAG+TGG | 0.640874 | 1.4:-14404199 | None:intergenic |
| TTTGTAGGTACCAAATGGAG+TGG | 0.643688 | 1.4:+14408040 | MS.gene31850:intron |
| ATATTGTATTTCATATACCG+TGG | 0.658275 | 1.4:+14408089 | MS.gene31850:CDS |
| GAGTACTTACAGCAATAAAG+GGG | 0.676810 | 1.4:-14407882 | None:intergenic |
| TGTAGGTACCAAATGGAGTG+GGG | 0.700887 | 1.4:+14408042 | MS.gene31850:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTACATATTTAATTATTAA+GGG | + | chr1.4:14406907-14406926 | MS.gene31850:intron | 10.0% |
| !! | TAAAAATTAACAAAAGAAAT+TGG | - | chr1.4:14407744-14407763 | None:intergenic | 10.0% |
| !! | TAATAAAAAAATTGAGAAAA+AGG | - | chr1.4:14404636-14404655 | None:intergenic | 10.0% |
| !! | TAGTACATATTTAATTATTA+AGG | + | chr1.4:14406906-14406925 | MS.gene31850:intron | 10.0% |
| !! | TTACAAAAAAAATAAGATAA+AGG | + | chr1.4:14405417-14405436 | MS.gene31850:intron | 10.0% |
| !!! | AAATAAAAAAAAAAGTATTG+CGG | + | chr1.4:14406562-14406581 | MS.gene31850:intron | 10.0% |
| !!! | ATGAATTTATTTTTCTTAAA+CGG | + | chr1.4:14406824-14406843 | MS.gene31850:intron | 10.0% |
| !!! | TATACATATTATATTTTGAT+TGG | + | chr1.4:14407137-14407156 | MS.gene31850:intron | 10.0% |
| !!! | TTATTTTTTTTGTAACAATT+TGG | - | chr1.4:14405412-14405431 | None:intergenic | 10.0% |
| !!! | TTGTTTCATATTTTATAATA+GGG | - | chr1.4:14406669-14406688 | None:intergenic | 10.0% |
| !! | AAGAAATGAAAAAGATTAAA+AGG | - | chr1.4:14403484-14403503 | None:intergenic | 15.0% |
| !! | AATCAAAATGTAATATACAT+TGG | + | chr1.4:14404403-14404422 | MS.gene31850:intron | 15.0% |
| !! | ACCATATAGTAAAAATAATA+GGG | - | chr1.4:14403787-14403806 | None:intergenic | 15.0% |
| !! | AGAAATGAAAAAGATTAAAA+GGG | - | chr1.4:14403483-14403502 | None:intergenic | 15.0% |
| !! | ATATTGCCTTAATTATATTT+AGG | + | chr1.4:14405452-14405471 | MS.gene31850:intron | 15.0% |
| !! | TAACATTAATTCATGATATT+TGG | - | chr1.4:14404812-14404831 | None:intergenic | 15.0% |
| !! | TACCATATAGTAAAAATAAT+AGG | - | chr1.4:14403788-14403807 | None:intergenic | 15.0% |
| !! | TATATAATGTACTATGTATA+AGG | - | chr1.4:14407687-14407706 | None:intergenic | 15.0% |
| !! | TATATGTATGAAAAAAGAAA+AGG | - | chr1.4:14404306-14404325 | None:intergenic | 15.0% |
| !! | TTACTAAATACAGTAAAATA+TGG | + | chr1.4:14406711-14406730 | MS.gene31850:intron | 15.0% |
| !!! | AAATTTAATCTTTTTGTGTA+TGG | + | chr1.4:14403522-14403541 | MS.gene31850:intron | 15.0% |
| !!! | AATAAAAAAAAAAGTATTGC+GGG | + | chr1.4:14406563-14406582 | MS.gene31850:intron | 15.0% |
| !!! | AATGTATATTACATTTTGAT+TGG | - | chr1.4:14404404-14404423 | None:intergenic | 15.0% |
| !!! | GTGTAGATTTTATTTTTAAA+AGG | + | chr1.4:14406966-14406985 | MS.gene31850:intron | 15.0% |
| !!! | GTTGTTTCATATTTTATAAT+AGG | - | chr1.4:14406670-14406689 | None:intergenic | 15.0% |
| !!! | TATATATTTTAACATAAGAG+TGG | + | chr1.4:14406996-14407015 | MS.gene31850:intron | 15.0% |
| !! | AAAAGTTACTCTTAATCATA+AGG | - | chr1.4:14407070-14407089 | None:intergenic | 20.0% |
| !! | AAACATCAACATAAATAAGT+TGG | - | chr1.4:14407376-14407395 | None:intergenic | 20.0% |
| !! | AAAGAAATGAATCTATACAT+TGG | - | chr1.4:14403426-14403445 | None:intergenic | 20.0% |
| !! | AATGTCAAATATCCTAATTA+AGG | - | chr1.4:14407221-14407240 | None:intergenic | 20.0% |
| !! | ACAAAATTGAACAATCAAAA+TGG | + | chr1.4:14406072-14406091 | MS.gene31850:intron | 20.0% |
| !! | ACGGAAAAAAATAAAGATAA+AGG | - | chr1.4:14404577-14404596 | None:intergenic | 20.0% |
| !! | ATACTTGTAACAATCATAAA+TGG | + | chr1.4:14403965-14403984 | MS.gene31850:CDS | 20.0% |
| !! | ATCTAGAAAAAACCTAATTA+AGG | - | chr1.4:14404337-14404356 | None:intergenic | 20.0% |
| !! | ATGTCAAATATCCTAATTAA+GGG | - | chr1.4:14407220-14407239 | None:intergenic | 20.0% |
| !! | ATTAAGGCAATATTACATTA+TGG | - | chr1.4:14405445-14405464 | None:intergenic | 20.0% |
| !! | CAAAATTGAACAATCAAAAT+GGG | + | chr1.4:14406073-14406092 | MS.gene31850:intron | 20.0% |
| !! | CAAGAATATAGAAAAGATTA+TGG | - | chr1.4:14403302-14403321 | None:intergenic | 20.0% |
| !! | GAATGTAACCAATAAATTTA+AGG | - | chr1.4:14405559-14405578 | None:intergenic | 20.0% |
| !! | TAAATAACCAAAACAGAAAA+AGG | - | chr1.4:14407548-14407567 | None:intergenic | 20.0% |
| !! | TAACATTAATTCACGATATT+TGG | + | chr1.4:14405155-14405174 | MS.gene31850:intron | 20.0% |
| !! | TATAGACAAGATTACATTAT+AGG | + | chr1.4:14404519-14404538 | MS.gene31850:intron | 20.0% |
| !! | TATTTAATTATTAAGGGAGA+TGG | + | chr1.4:14406913-14406932 | MS.gene31850:intron | 20.0% |
| !! | TGAAAACAATGATTAACAAA+AGG | - | chr1.4:14407576-14407595 | None:intergenic | 20.0% |
| !! | TGAAATTTAACATATGAACT+AGG | + | chr1.4:14407929-14407948 | MS.gene31850:intron | 20.0% |
| !! | TGAACACCTAAATATAATTA+AGG | - | chr1.4:14405461-14405480 | None:intergenic | 20.0% |
| !! | TTAAGGCAATATTACATTAT+GGG | - | chr1.4:14405444-14405463 | None:intergenic | 20.0% |
| !!! | AAACTAAATCTCTTTTCTAT+AGG | - | chr1.4:14404875-14404894 | None:intergenic | 20.0% |
| !!! | AACTAAATCTCTTTTCTATA+GGG | - | chr1.4:14404874-14404893 | None:intergenic | 20.0% |
| !!! | AAGTATATGTAACAATTTTC+AGG | + | chr1.4:14403912-14403931 | MS.gene31850:intron | 20.0% |
| !!! | AATTTATTTTTCTTAAACGG+TGG | + | chr1.4:14406827-14406846 | MS.gene31850:intron | 20.0% |
| !!! | ACCCTATTATTTTTACTATA+TGG | + | chr1.4:14403783-14403802 | MS.gene31850:intron | 20.0% |
| !!! | AGTGTATATTTTAACATAAG+AGG | - | chr1.4:14406387-14406406 | None:intergenic | 20.0% |
| !!! | ATATTCTTGTTTTGAATTCT+TGG | + | chr1.4:14403313-14403332 | MS.gene31850:intron | 20.0% |
| !!! | ATCTTTATTTTTTTCCGTTT+AGG | + | chr1.4:14404579-14404598 | MS.gene31850:intron | 20.0% |
| !!! | ATTTTTTCTAAGTAACCATA+TGG | + | chr1.4:14403749-14403768 | MS.gene31850:intron | 20.0% |
| !!! | CTTTTTGATTTGATTTTTCT+TGG | + | chr1.4:14405737-14405756 | MS.gene31850:intron | 20.0% |
| !!! | GAAATGTTTTCTAATATGTT+TGG | - | chr1.4:14406425-14406444 | None:intergenic | 20.0% |
| !!! | GATATTGCACATTTTATATT+CGG | + | chr1.4:14403262-14403281 | MS.gene31850:CDS | 20.0% |
| !!! | GTGTATATTTTAACATAAGA+GGG | - | chr1.4:14406386-14406405 | None:intergenic | 20.0% |
| !!! | TGTATATTTTAACATAAGAG+GGG | - | chr1.4:14406385-14406404 | None:intergenic | 20.0% |
| !!! | TTCTAATATGTTTGGAATAA+GGG | - | chr1.4:14406417-14406436 | None:intergenic | 20.0% |
| !!! | TTTCTAATATGTTTGGAATA+AGG | - | chr1.4:14406418-14406437 | None:intergenic | 20.0% |
| ! | AAAAGAAGAATCAATGGAAA+TGG | + | chr1.4:14408139-14408158 | MS.gene31850:CDS | 25.0% |
| ! | AAAGAAGAATCAATGGAAAT+GGG | + | chr1.4:14408140-14408159 | MS.gene31850:CDS | 25.0% |
| ! | AAATCAACAGAAAAATTCTC+TGG | + | chr1.4:14403585-14403604 | MS.gene31850:CDS | 25.0% |
| ! | ACAAAATGGAACAATCATAA+TGG | - | chr1.4:14405598-14405617 | None:intergenic | 25.0% |
| ! | AGAGAAATACAAATAGTGAA+AGG | - | chr1.4:14407822-14407841 | None:intergenic | 25.0% |
| ! | ATATTGTATTTCATATACCG+TGG | + | chr1.4:14408089-14408108 | MS.gene31850:CDS | 25.0% |
| ! | ATGAAAATGATGCAAAACAA+AGG | - | chr1.4:14403710-14403729 | None:intergenic | 25.0% |
| ! | ATTAATTTACACTACAAGAC+TGG | + | chr1.4:14405487-14405506 | MS.gene31850:intron | 25.0% |
| ! | CAAAATGGAACAATCATAAT+GGG | - | chr1.4:14405597-14405616 | None:intergenic | 25.0% |
| ! | CTGAATGTCCTTAAATTTAT+TGG | + | chr1.4:14405548-14405567 | MS.gene31850:intron | 25.0% |
| ! | GAAACAAGAATTGATCAATA+TGG | + | chr1.4:14406110-14406129 | MS.gene31850:intron | 25.0% |
| ! | TAAAGAAGAGATTTGAATGA+AGG | + | chr1.4:14406138-14406157 | MS.gene31850:intron | 25.0% |
| ! | TACAAAAGTTAAGATTGTTC+TGG | - | chr1.4:14405030-14405049 | None:intergenic | 25.0% |
| ! | TACATCAAATTTCTTTCATC+TGG | - | chr1.4:14406240-14406259 | None:intergenic | 25.0% |
| ! | TAGAAAAAACCTAATTAAGG+TGG | - | chr1.4:14404334-14404353 | None:intergenic | 25.0% |
| ! | TAGCAATCCTTAAAGTATAA+CGG | - | chr1.4:14405800-14405819 | None:intergenic | 25.0% |
| ! | TATAGTTAACCACCTTAATT+AGG | + | chr1.4:14404322-14404341 | MS.gene31850:intron | 25.0% |
| ! | TATGAAACTAATCATCGAAA+CGG | + | chr1.4:14407342-14407361 | MS.gene31850:intron | 25.0% |
| ! | TGGATTTAATAGGTCAAAAA+AGG | - | chr1.4:14407502-14407521 | None:intergenic | 25.0% |
| ! | TGTAATTCAAGAATCTTTGA+GGG | - | chr1.4:14406355-14406374 | None:intergenic | 25.0% |
| ! | TGTAATTCAAGCATCTTATA+GGG | + | chr1.4:14406937-14406956 | MS.gene31850:intron | 25.0% |
| ! | TGTCAAATATCCTAATTAAG+GGG | - | chr1.4:14407219-14407238 | None:intergenic | 25.0% |
| ! | TGTGTTTAAAAGAAGAATTG+AGG | + | chr1.4:14405126-14405145 | MS.gene31850:intron | 25.0% |
| ! | TGTGTTTAAAAGAAGATTTG+AGG | - | chr1.4:14404841-14404860 | None:intergenic | 25.0% |
| ! | TTAATTTCACAAATGTTGCA+AGG | - | chr1.4:14405094-14405113 | None:intergenic | 25.0% |
| ! | TTGCAACATTTGTGAAATTA+AGG | + | chr1.4:14405093-14405112 | MS.gene31850:intron | 25.0% |
| ! | TTGTAATTCAAGCATCTTAT+AGG | + | chr1.4:14406936-14406955 | MS.gene31850:intron | 25.0% |
| ! | TTTAAAAGTGAATGATCATG+TGG | - | chr1.4:14407613-14407632 | None:intergenic | 25.0% |
| !! | ATGTATATGTGCTTTTATGA+GGG | - | chr1.4:14404613-14404632 | None:intergenic | 25.0% |
| !! | GAACATTTTCATCATATTTC+TGG | - | chr1.4:14404716-14404735 | None:intergenic | 25.0% |
| !! | GAATGTAAGTGATGAATTTT+AGG | + | chr1.4:14406210-14406229 | MS.gene31850:intron | 25.0% |
| !! | GTATTTTCAATCATCATGTA+TGG | + | chr1.4:14404172-14404191 | MS.gene31850:CDS | 25.0% |
| !! | TCCTAAATGAATTTTGTGTA+GGG | - | chr1.4:14407658-14407677 | None:intergenic | 25.0% |
| !! | TCTAATATGTTTGGAATAAG+GGG | - | chr1.4:14406416-14406435 | None:intergenic | 25.0% |
| !! | TGAGACGATTAATTTTATAG+CGG | - | chr1.4:14407288-14407307 | None:intergenic | 25.0% |
| !! | TTCCTAAATGAATTTTGTGT+AGG | - | chr1.4:14407659-14407678 | None:intergenic | 25.0% |
| !!! | ATATTTTAACATAAGAGTGG+AGG | + | chr1.4:14406999-14407018 | MS.gene31850:intron | 25.0% |
| !!! | ATCTTTATTTTTTCCCGTTT+AGG | - | chr1.4:14405383-14405402 | None:intergenic | 25.0% |
| !!! | ATGTTTTAAACTGCTTTACA+AGG | + | chr1.4:14407390-14407409 | MS.gene31850:intron | 25.0% |
| !!! | ATTTTAACATAAGAAGAGAG+AGG | - | chr1.4:14406482-14406501 | None:intergenic | 25.0% |
| !!! | CATTTTATATTCGGAGTATT+TGG | + | chr1.4:14403271-14403290 | MS.gene31850:CDS | 25.0% |
| !!! | TATGTAACAATTTTCAGGTA+TGG | + | chr1.4:14403917-14403936 | MS.gene31850:intron | 25.0% |
| !!! | TATTTTAACATAAGAGTGGA+GGG | + | chr1.4:14407000-14407019 | MS.gene31850:intron | 25.0% |
| AAACTTACCATAATTGAGAG+TGG | - | chr1.4:14404202-14404221 | None:intergenic | 30.0% | |
| AAGTCATCCGTTATACTTTA+AGG | + | chr1.4:14405790-14405809 | MS.gene31850:intron | 30.0% | |
| ACAAATAGTGAAAGGAAGAA+TGG | - | chr1.4:14407814-14407833 | None:intergenic | 30.0% | |
| ACCAACAAAAGAAGAATCAA+TGG | + | chr1.4:14408133-14408152 | MS.gene31850:CDS | 30.0% | |
| ACCCTACACAAAATTCATTT+AGG | + | chr1.4:14407654-14407673 | MS.gene31850:intron | 30.0% | |
| AGAAGATGATGAAGATTCAA+AGG | + | chr1.4:14405210-14405229 | MS.gene31850:intron | 30.0% | |
| AGGAATAATGAAATGACATG+TGG | + | chr1.4:14407949-14407968 | MS.gene31850:intron | 30.0% | |
| ATTGCCAAATACAATGCAAA+TGG | - | chr1.4:14407988-14408007 | None:intergenic | 30.0% | |
| ATTGTTACAAGTATGTTGTC+TGG | - | chr1.4:14403959-14403978 | None:intergenic | 30.0% | |
| CTCACGAAAATTGAAAAATG+CGG | - | chr1.4:14405633-14405652 | None:intergenic | 30.0% | |
| GAACATCTTCATCATATTTC+TGG | + | chr1.4:14405250-14405269 | MS.gene31850:intron | 30.0% | |
| GAAGATTCAAAGAAAGAAGA+TGG | - | chr1.4:14404746-14404765 | None:intergenic | 30.0% | |
| GGAAAAAGATTTCATGCATT+AGG | - | chr1.4:14407481-14407500 | None:intergenic | 30.0% | |
| GTAACAATCATAAATGGAAC+AGG | + | chr1.4:14403971-14403990 | MS.gene31850:CDS | 30.0% | |
| GTAATTCAAGAATCTTTGAG+GGG | - | chr1.4:14406354-14406373 | None:intergenic | 30.0% | |
| GTAATTCAAGCTTCTCTTAA+GGG | - | chr1.4:14406456-14406475 | None:intergenic | 30.0% | |
| GTACCTACAAATCACAAAAT+TGG | - | chr1.4:14408031-14408050 | None:intergenic | 30.0% | |
| GTGTAATTCAAGAATCTTTG+AGG | - | chr1.4:14406356-14406375 | None:intergenic | 30.0% | |
| TAAATTCCAACGACAAGATA+AGG | - | chr1.4:14404269-14404288 | None:intergenic | 30.0% | |
| TCACTATTTGTATTTCTCTG+TGG | + | chr1.4:14407823-14407842 | MS.gene31850:CDS | 30.0% | |
| TCTAACTCAATATTCAAACC+CGG | + | chr1.4:14404951-14404970 | MS.gene31850:intron | 30.0% | |
| TGAGTACTTACAGCAATAAA+GGG | - | chr1.4:14407886-14407905 | None:intergenic | 30.0% | |
| TGCAAACACTGTTATTACAA+AGG | - | chr1.4:14404080-14404099 | None:intergenic | 30.0% | |
| TGTAATTCAAGCTTCTCTTA+AGG | - | chr1.4:14406457-14406476 | None:intergenic | 30.0% | |
| TGTACCATTTGCATTGTATT+TGG | + | chr1.4:14407981-14408000 | MS.gene31850:intron | 30.0% | |
| TTGAGTACTTACAGCAATAA+AGG | - | chr1.4:14407887-14407906 | None:intergenic | 30.0% | |
| ! | ACTTTCTTTTCTTGTTCTTG+TGG | + | chr1.4:14403656-14403675 | MS.gene31850:intron | 30.0% |
| ! | CTAATATGTTTGGAATAAGG+GGG | - | chr1.4:14406415-14406434 | None:intergenic | 30.0% |
| ! | GATGTATATGTGCTTTTATG+AGG | - | chr1.4:14404614-14404633 | None:intergenic | 30.0% |
| ! | GTTAGCAGATTTTATTAGGT+TGG | + | chr1.4:14405957-14405976 | MS.gene31850:intron | 30.0% |
| ! | TTGATTGGTTGATATCATGA+GGG | - | chr1.4:14407171-14407152 | None:intergenic | 30.0% |
| ! | TTTGATTGGTTGATATCATG+AGG | - | chr1.4:14407170-14407151 | None:intergenic | 30.0% |
| !! | AATTTGAAACTGCAGCATTT+TGG | + | chr1.4:14406045-14406064 | MS.gene31850:intron | 30.0% |
| !! | ATTTTAACATAAGAGTGGAG+GGG | + | chr1.4:14407001-14407020 | MS.gene31850:intron | 30.0% |
| !! | GTTCTTTTGTTTGGACTTAA+AGG | + | chr1.4:14405903-14405922 | MS.gene31850:intron | 30.0% |
| !! | TGTGCTTTTAAGAGAGATAA+AGG | + | chr1.4:14405356-14405375 | MS.gene31850:intron | 30.0% |
| !! | TTTCTAAGGGTCAAATTTTC+TGG | + | chr1.4:14407313-14407332 | MS.gene31850:intron | 30.0% |
| !! | TTTGATTTTTCTTGGTTGTG+AGG | + | chr1.4:14405745-14405764 | MS.gene31850:intron | 30.0% |
| !!! | AATTCAAGGAAAGTGTTTTG+TGG | + | chr1.4:14404136-14404155 | MS.gene31850:CDS | 30.0% |
| !!! | GAGTTTGCTAGCATTTTTTT+CGG | + | chr1.4:14405847-14405866 | MS.gene31850:intron | 30.0% |
| !!! | TCCATTGATTCTTCTTTTGT+TGG | - | chr1.4:14408137-14408156 | None:intergenic | 30.0% |
| !!! | TGGTTCATTTTTGGTCTATT+AGG | + | chr1.4:14407853-14407872 | MS.gene31850:CDS | 30.0% |
| !!! | TTTTGGGGTTATTTTTATGC+CGG | - | chr1.4:14404973-14404992 | None:intergenic | 30.0% |
| AAATACCCTCTAAACAAGAG+AGG | - | chr1.4:14404363-14404382 | None:intergenic | 35.0% | |
| AAGGAGAAGCTGAAAATAAG+TGG | + | chr1.4:14404046-14404065 | MS.gene31850:CDS | 35.0% | |
| AATACCCTCTAAACAAGAGA+GGG | - | chr1.4:14404362-14404381 | None:intergenic | 35.0% | |
| AATTACTCCCTAAACAAGAG+AGG | + | chr1.4:14407178-14407197 | MS.gene31850:intron | 35.0% | |
| ACGGTAATTCTCACGATATT+TGG | - | chr1.4:14405678-14405697 | None:intergenic | 35.0% | |
| AGAGAGATAAAGGACCTAAA+CGG | + | chr1.4:14405366-14405385 | MS.gene31850:intron | 35.0% | |
| AGTGATCAAAACAAAGAGTG+TGG | + | chr1.4:14407780-14407799 | MS.gene31850:CDS | 35.0% | |
| ATTACTCCCTAAACAAGAGA+GGG | + | chr1.4:14407179-14407198 | MS.gene31850:intron | 35.0% | |
| ATTTCACAAATGTTGCAAGG+CGG | - | chr1.4:14405091-14405110 | None:intergenic | 35.0% | |
| ATTTCTCTGTTTGCTTTGCA+TGG | + | chr1.4:14404112-14404131 | MS.gene31850:CDS | 35.0% | |
| CAGAAAAAGGACAACAGAAA+AGG | - | chr1.4:14407535-14407554 | None:intergenic | 35.0% | |
| CTTGTGGATCTGGATTTAAT+AGG | - | chr1.4:14407512-14407531 | None:intergenic | 35.0% | |
| GAGTACTTACAGCAATAAAG+GGG | - | chr1.4:14407885-14407904 | None:intergenic | 35.0% | |
| TAGACCAAAAATGAACCATG+AGG | - | chr1.4:14407851-14407870 | None:intergenic | 35.0% | |
| TCAACTGTCTTCTTTCTTCT+TGG | + | chr1.4:14403631-14403650 | MS.gene31850:CDS | 35.0% | |
| TCATATACCGTGGCAATAAA+GGG | + | chr1.4:14408099-14408118 | MS.gene31850:CDS | 35.0% | |
| TGAGGGATAAAAGACCTAAA+CGG | - | chr1.4:14404596-14404615 | None:intergenic | 35.0% | |
| TTCATATACCGTGGCAATAA+AGG | + | chr1.4:14408098-14408117 | MS.gene31850:CDS | 35.0% | |
| TTGCTTTGCATGGTAATTCA+AGG | + | chr1.4:14404122-14404141 | MS.gene31850:CDS | 35.0% | |
| TTGTTTGGACTTAAAGGCTT+TGG | + | chr1.4:14405909-14405928 | MS.gene31850:intron | 35.0% | |
| ! | ACATTACCCTCTCTTGTTTA+GGG | - | chr1.4:14407188-14407207 | None:intergenic | 35.0% |
| ! | ATACTTTAAGGATTGCTAGC+AGG | + | chr1.4:14405802-14405821 | MS.gene31850:intron | 35.0% |
| ! | ATCGTCTCAGTGTATTTCTA+AGG | + | chr1.4:14407299-14407318 | MS.gene31850:intron | 35.0% |
| ! | ATTACCCTCTCTTGTTTAGA+GGG | + | chr1.4:14404355-14404374 | MS.gene31850:intron | 35.0% |
| ! | ATTTTCAGCTTCTCCTTCTT+AGG | - | chr1.4:14404043-14404062 | None:intergenic | 35.0% |
| ! | CATTTTCTTTCTTGTGATGC+AGG | + | chr1.4:14403369-14403388 | MS.gene31850:intron | 35.0% |
| ! | CTGTTGTCCTTTTTCTGTTT+TGG | + | chr1.4:14407538-14407557 | MS.gene31850:intron | 35.0% |
| ! | GAGGCTTTTGTTCTTTTGTT+TGG | + | chr1.4:14405894-14405913 | MS.gene31850:intron | 35.0% |
| ! | GATTGGTTGATATCATGAGA+GGG | + | chr1.4:14407154-14407173 | MS.gene31850:intron | 35.0% |
| ! | GCGTGTTAGCAGATTTTATT+AGG | + | chr1.4:14405953-14405972 | MS.gene31850:intron | 35.0% |
| ! | TACATTACCCTCTCTTGTTT+AGG | - | chr1.4:14407189-14407208 | None:intergenic | 35.0% |
| ! | TCGTCTCAGTGTATTTCTAA+GGG | + | chr1.4:14407300-14407319 | MS.gene31850:intron | 35.0% |
| ! | TGATTGGTTGATATCATGAG+AGG | + | chr1.4:14407153-14407172 | MS.gene31850:intron | 35.0% |
| ! | TGATTGGTTGATATCATGAG+GGG | - | chr1.4:14407172-14407153 | None:intergenic | 35.0% |
| ! | TGTGATTTGTAGGTACCAAA+TGG | + | chr1.4:14408035-14408054 | MS.gene31850:intron | 35.0% |
| ! | TTCTTTTCTTGTTCTTGTGG+CGG | + | chr1.4:14403659-14403678 | MS.gene31850:intron | 35.0% |
| ! | TTTCTAACGCACAAGTCTTT+TGG | + | chr1.4:14407260-14407279 | MS.gene31850:intron | 35.0% |
| !! | ATGTTTTTGTTCTCACGTTC+GGG | + | chr1.4:14406163-14406182 | MS.gene31850:intron | 35.0% |
| !! | ATTTTAACATAAGAGGGGAG+AGG | - | chr1.4:14406380-14406399 | None:intergenic | 35.0% |
| !! | GAGCCAATTTTGTGATTTGT+AGG | + | chr1.4:14408025-14408044 | MS.gene31850:intron | 35.0% |
| !! | GATGTTTTTGTTCTCACGTT+CGG | + | chr1.4:14406162-14406181 | MS.gene31850:intron | 35.0% |
| !! | TTTTGGCCTTTTTCTCTTCT+TGG | + | chr1.4:14403398-14403417 | MS.gene31850:CDS | 35.0% |
| !!! | TTTGGGGTTATTTTTATGCC+GGG | - | chr1.4:14404972-14404991 | None:intergenic | 35.0% |
| AAAAATGACCCCACTCCATT+TGG | - | chr1.4:14408053-14408072 | None:intergenic | 40.0% | |
| AAAAGTCACGATACCTGATG+CGG | + | chr1.4:14405994-14406013 | MS.gene31850:intron | 40.0% | |
| AAACTCCCAAAACATCACAG+TGG | - | chr1.4:14405833-14405852 | None:intergenic | 40.0% | |
| ATGTTGTCTGGTGACACAAA+TGG | - | chr1.4:14403947-14403966 | None:intergenic | 40.0% | |
| ATTCAAGCTTCTCTTAAGGG+AGG | - | chr1.4:14406453-14406472 | None:intergenic | 40.0% | |
| CATAGTGTTTGCACCTAAGA+AGG | + | chr1.4:14404027-14404046 | MS.gene31850:CDS | 40.0% | |
| CCAACGACAAGATAAGGATA+AGG | - | chr1.4:14404263-14404282 | None:intergenic | 40.0% | |
| CCTTATCCTTATCTTGTCGT+TGG | + | chr1.4:14404260-14404279 | MS.gene31850:intron | 40.0% | |
| GAGAGATAAAGGACCTAAAC+GGG | + | chr1.4:14405367-14405386 | MS.gene31850:intron | 40.0% | |
| GCTGAAATGGTTATGTCATG+AGG | + | chr1.4:14405875-14405894 | MS.gene31850:intron | 40.0% | |
| GTAGTTCTCACCCCTTAATT+AGG | + | chr1.4:14407206-14407225 | MS.gene31850:intron | 40.0% | |
| TATTTCTCTGTGGTACCTCA+TGG | + | chr1.4:14407833-14407852 | MS.gene31850:CDS | 40.0% | |
| TGGTTCACCACTCTCAATTA+TGG | + | chr1.4:14404192-14404211 | MS.gene31850:CDS | 40.0% | |
| TTACAGCAATAAAGGGGTCA+CGG | - | chr1.4:14407879-14407898 | None:intergenic | 40.0% | |
| TTCAAGCATCTTATAGGGAG+AGG | + | chr1.4:14406942-14406961 | MS.gene31850:intron | 40.0% | |
| TTCAAGCTTCTCTTAAGGGA+GGG | - | chr1.4:14406452-14406471 | None:intergenic | 40.0% | |
| TTGCATTCCCTTTATTGCCA+CGG | - | chr1.4:14408109-14408128 | None:intergenic | 40.0% | |
| TTGGAGCCAAGAAGAGAAAA+AGG | - | chr1.4:14403407-14403426 | None:intergenic | 40.0% | |
| TTGTAGGTACCAAATGGAGT+GGG | + | chr1.4:14408041-14408060 | MS.gene31850:intron | 40.0% | |
| TTTGTAGGTACCAAATGGAG+TGG | + | chr1.4:14408040-14408059 | MS.gene31850:intron | 40.0% | |
| ! | ATATGTTTGGAATAAGGGGG+AGG | - | chr1.4:14406412-14406431 | None:intergenic | 40.0% |
| ! | CAAAGCTGCTCTCAATTTTG+GGG | - | chr1.4:14404988-14405007 | None:intergenic | 40.0% |
| ! | GATTACCCTCTCTTGTTTAG+AGG | + | chr1.4:14404354-14404373 | MS.gene31850:intron | 40.0% |
| ! | GCAAAGCTGCTCTCAATTTT+GGG | - | chr1.4:14404989-14405008 | None:intergenic | 40.0% |
| ! | GGCAGTTTAGAACGACAAAA+TGG | - | chr1.4:14405612-14405631 | None:intergenic | 40.0% |
| ! | GGTACCTCATGGTTCATTTT+TGG | + | chr1.4:14407844-14407863 | MS.gene31850:CDS | 40.0% |
| ! | TATGTTTGGAATAAGGGGGA+GGG | - | chr1.4:14406411-14406430 | None:intergenic | 40.0% |
| ! | TGCAAAGCTGCTCTCAATTT+TGG | - | chr1.4:14404990-14405009 | None:intergenic | 40.0% |
| ! | TGTGATGCAGGAAATGCTTT+TGG | + | chr1.4:14403381-14403400 | MS.gene31850:intron | 40.0% |
| ! | TGTTGCCACTGTGATGTTTT+GGG | + | chr1.4:14405825-14405844 | MS.gene31850:intron | 40.0% |
| !! | AGACAGTTGAGAAGTGTCAT+AGG | - | chr1.4:14403621-14403640 | None:intergenic | 40.0% |
| !! | GACAGTTGAGAAGTGTCATA+GGG | - | chr1.4:14403620-14403639 | None:intergenic | 40.0% |
| !! | GGGTATAGTTCTAAGCCATA+TGG | - | chr1.4:14403767-14403786 | None:intergenic | 40.0% |
| !! | TGACGTGGTTCTGGAAATAA+CGG | - | chr1.4:14405697-14405716 | None:intergenic | 40.0% |
| !! | TGTTTTTGTTCTCACGTTCG+GGG | + | chr1.4:14406164-14406183 | MS.gene31850:intron | 40.0% |
| !! | TTGAGAAGTGTCATAGGGTA+AGG | - | chr1.4:14403615-14403634 | None:intergenic | 40.0% |
| !! | TTTTTCGGTTGCTGCTGAAA+TGG | + | chr1.4:14405862-14405881 | MS.gene31850:intron | 40.0% |
| !!! | AATGGAGTGGGGTCATTTTT+AGG | + | chr1.4:14408053-14408072 | MS.gene31850:CDS | 40.0% |
| ACAGAAAAGGCTTGTGGATC+TGG | - | chr1.4:14407522-14407541 | None:intergenic | 45.0% | |
| ACTGCAAAACCAATGGGAGA+AGG | + | chr1.4:14408164-14408183 | MS.gene31850:CDS | 45.0% | |
| AGGACAACAGAAAAGGCTTG+TGG | - | chr1.4:14407528-14407547 | None:intergenic | 45.0% | |
| CTGCAAAACCAATGGGAGAA+GGG | + | chr1.4:14408165-14408184 | MS.gene31850:CDS | 45.0% | |
| TCAAGCTTCTCTTAAGGGAG+GGG | - | chr1.4:14406451-14406470 | None:intergenic | 45.0% | |
| TGCAAAACCAATGGGAGAAG+GGG | + | chr1.4:14408166-14408185 | MS.gene31850:CDS | 45.0% | |
| TGTAGGTACCAAATGGAGTG+GGG | + | chr1.4:14408042-14408061 | MS.gene31850:intron | 45.0% | |
| ! | AAAGGCTTTGGCTGATAGTG+AGG | + | chr1.4:14405921-14405940 | MS.gene31850:intron | 45.0% |
| ! | AATGGGCACTGCAAAACCAA+TGG | + | chr1.4:14408157-14408176 | MS.gene31850:CDS | 45.0% |
| ! | ATGGGCACTGCAAAACCAAT+GGG | + | chr1.4:14408158-14408177 | MS.gene31850:CDS | 45.0% |
| ! | ATGTTTGGAATAAGGGGGAG+GGG | - | chr1.4:14406410-14406429 | None:intergenic | 45.0% |
| ! | GTGTTGCCACTGTGATGTTT+TGG | + | chr1.4:14405824-14405843 | MS.gene31850:intron | 45.0% |
| ! | GTTATTTCCAGAACCACGTC+AGG | + | chr1.4:14405696-14405715 | MS.gene31850:intron | 45.0% |
| !! | GTTGTTTCTAGAACCGCATC+AGG | - | chr1.4:14406010-14406029 | None:intergenic | 45.0% |
| !! | ATTATTAAAAAAAAATATTG+AGG | - | chr1.4:14406518-14406537 | None:intergenic | 5.0% |
| !! | CATTATAATTTAAATATTAA+TGG | - | chr1.4:14406802-14406821 | None:intergenic | 5.0% |
| !!! | AAAAAAAAAAAATCAATTTT+AGG | + | chr1.4:14404465-14404484 | MS.gene31850:intron | 5.0% |
| !!! | ATTATTGTAATTTTATTTTT+TGG | - | chr1.4:14406692-14406711 | None:intergenic | 5.0% |
| !!! | TCTTTTATTTAATTATATTA+AGG | - | chr1.4:14406314-14406333 | None:intergenic | 5.0% |
| AAATGTTGCAAGGCGGATGG+TGG | - | chr1.4:14405084-14405103 | None:intergenic | 50.0% | |
| ATGGGAGAAGGGGAACTCAA+AGG | + | chr1.4:14408176-14408195 | MS.gene31850:CDS | 50.0% | |
| CACAAATGTTGCAAGGCGGA+TGG | - | chr1.4:14405087-14405106 | None:intergenic | 50.0% | |
| TCAACTCACCATACCTGACG+TGG | - | chr1.4:14405712-14405731 | None:intergenic | 50.0% | |
| TGGGAGAAGGGGAACTCAAA+GGG | + | chr1.4:14408177-14408196 | MS.gene31850:CDS | 50.0% | |
| TTCCAGAACCACGTCAGGTA+TGG | + | chr1.4:14405701-14405720 | MS.gene31850:intron | 50.0% | |
| TTGAGTTCCCCTTCTCCCAT+TGG | - | chr1.4:14408176-14408195 | None:intergenic | 50.0% | |
| AGGCTTAGTCACTGGCGGAA+GGG | - | chr1.4:14405061-14405080 | None:intergenic | 55.0% | |
| CACCATACCTGACGTGGTTC+TGG | - | chr1.4:14405706-14405725 | None:intergenic | 55.0% | |
| TAGTCACTGGCGGAAGGGTT+AGG | - | chr1.4:14405056-14405075 | None:intergenic | 55.0% | |
| TCACGTTCGGGGTTGTGGAA+TGG | + | chr1.4:14406175-14406194 | MS.gene31850:intron | 55.0% | |
| TGTTCTCACGTTCGGGGTTG+TGG | + | chr1.4:14406170-14406189 | MS.gene31850:intron | 55.0% | |
| ! | GCTTTGGCTGATAGTGAGGC+AGG | + | chr1.4:14405925-14405944 | MS.gene31850:intron | 55.0% |
| !! | GATGGTGGAGGCTTAGTCAC+TGG | - | chr1.4:14405069-14405088 | None:intergenic | 55.0% |
| GAGGCTTAGTCACTGGCGGA+AGG | - | chr1.4:14405062-14405081 | None:intergenic | 60.0% | |
| GGTGGAGGCTTAGTCACTGG+CGG | - | chr1.4:14405066-14405085 | None:intergenic | 60.0% | |
| ! | TGTTGCAAGGCGGATGGTGG+AGG | - | chr1.4:14405081-14405100 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 14403259 | 14408211 | 14403259 | ID=MS.gene31850 |
| chr1.4 | mRNA | 14403259 | 14408211 | 14403259 | ID=MS.gene31850.t1;Parent=MS.gene31850 |
| chr1.4 | exon | 14403259 | 14403292 | 14403259 | ID=MS.gene31850.t1.exon1;Parent=MS.gene31850.t1 |
| chr1.4 | CDS | 14403259 | 14403292 | 14403259 | ID=cds.MS.gene31850.t1;Parent=MS.gene31850.t1 |
| chr1.4 | exon | 14403391 | 14403427 | 14403391 | ID=MS.gene31850.t1.exon2;Parent=MS.gene31850.t1 |
| chr1.4 | CDS | 14403391 | 14403427 | 14403391 | ID=cds.MS.gene31850.t1;Parent=MS.gene31850.t1 |
| chr1.4 | exon | 14403557 | 14403652 | 14403557 | ID=MS.gene31850.t1.exon3;Parent=MS.gene31850.t1 |
| chr1.4 | CDS | 14403557 | 14403652 | 14403557 | ID=cds.MS.gene31850.t1;Parent=MS.gene31850.t1 |
| chr1.4 | exon | 14403934 | 14404213 | 14403934 | ID=MS.gene31850.t1.exon4;Parent=MS.gene31850.t1 |
| chr1.4 | CDS | 14403934 | 14404213 | 14403934 | ID=cds.MS.gene31850.t1;Parent=MS.gene31850.t1 |
| chr1.4 | exon | 14407775 | 14407894 | 14407775 | ID=MS.gene31850.t1.exon5;Parent=MS.gene31850.t1 |
| chr1.4 | CDS | 14407775 | 14407894 | 14407775 | ID=cds.MS.gene31850.t1;Parent=MS.gene31850.t1 |
| chr1.4 | exon | 14408047 | 14408211 | 14408047 | ID=MS.gene31850.t1.exon6;Parent=MS.gene31850.t1 |
| chr1.4 | CDS | 14408047 | 14408211 | 14408047 | ID=cds.MS.gene31850.t1;Parent=MS.gene31850.t1 |
| Gene Sequence |
| Protein sequence |
