Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013686.t1 | XP_013461374.1 | 95.5 | 247 | 11 | 0 | 1 | 247 | 1 | 247 | 2.00E-123 | 451.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013686.t1 | Q8L9J7 | 75.2 | 214 | 53 | 0 | 1 | 214 | 1 | 214 | 5.8e-87 | 322.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013686.t1 | A0A072V086 | 95.5 | 247 | 11 | 0 | 1 | 247 | 1 | 247 | 1.4e-123 | 451.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013686 | MS.gene57091 | PPI |
| MS.gene013686 | MS.gene52388 | PPI |
| MS.gene013686 | MS.gene90281 | PPI |
| MS.gene013686 | MS.gene026933 | PPI |
| MS.gene013686 | MS.gene79036 | PPI |
| MS.gene013686 | MS.gene54638 | PPI |
| MS.gene013686 | MS.gene79032 | PPI |
| MS.gene013686 | MS.gene026935 | PPI |
| MS.gene013686 | MS.gene68896 | PPI |
| MS.gene013686 | MS.gene026934 | PPI |
| MS.gene013686 | MS.gene00279 | PPI |
| MS.gene013686 | MS.gene54643 | PPI |
| MS.gene013686 | MS.gene026939 | PPI |
| MS.gene013686 | MS.gene004537 | PPI |
| MS.gene013686 | MS.gene044269 | PPI |
| MS.gene013686 | MS.gene69746 | PPI |
| MS.gene013686 | MS.gene55828 | PPI |
| MS.gene013686 | MS.gene026937 | PPI |
| MS.gene013686 | MS.gene79035 | PPI |
| MS.gene013686 | MS.gene70529 | PPI |
| MS.gene013686 | MS.gene46188 | PPI |
| MS.gene013686 | MS.gene54672 | PPI |
| MS.gene013686 | MS.gene048962 | PPI |
| MS.gene013686 | MS.gene25769 | PPI |
| MS.gene013686 | MS.gene54644 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013686.t1 | MTR_3g089125 | 95.547 | 247 | 11 | 0 | 1 | 247 | 1 | 247 | 1.41e-171 | 473 |
| MS.gene013686.t1 | MTR_1g029380 | 76.543 | 243 | 56 | 1 | 1 | 243 | 1 | 242 | 1.07e-131 | 372 |
| MS.gene013686.t1 | MTR_3g090940 | 45.690 | 232 | 122 | 3 | 2 | 229 | 3 | 234 | 5.27e-63 | 197 |
| MS.gene013686.t1 | MTR_8g042490 | 45.972 | 211 | 114 | 0 | 9 | 219 | 18 | 228 | 2.51e-61 | 192 |
| MS.gene013686.t1 | MTR_3g090950 | 45.852 | 229 | 120 | 3 | 5 | 229 | 6 | 234 | 5.54e-61 | 192 |
| MS.gene013686.t1 | MTR_1g028460 | 46.512 | 215 | 112 | 2 | 2 | 213 | 3 | 217 | 3.61e-58 | 185 |
| MS.gene013686.t1 | MTR_2g073190 | 45.495 | 222 | 121 | 0 | 2 | 223 | 11 | 232 | 9.36e-58 | 194 |
| MS.gene013686.t1 | MTR_3g080990 | 42.570 | 249 | 130 | 3 | 2 | 239 | 5 | 251 | 2.56e-57 | 183 |
| MS.gene013686.t1 | MTR_6g007633 | 43.379 | 219 | 118 | 4 | 9 | 221 | 12 | 230 | 2.33e-53 | 172 |
| MS.gene013686.t1 | MTR_8g099730 | 38.017 | 242 | 143 | 3 | 3 | 238 | 16 | 256 | 6.07e-52 | 169 |
| MS.gene013686.t1 | MTR_7g007490 | 40.948 | 232 | 131 | 4 | 6 | 234 | 11 | 239 | 4.23e-50 | 164 |
| MS.gene013686.t1 | MTR_2g436310 | 42.083 | 240 | 133 | 4 | 7 | 244 | 7 | 242 | 6.60e-49 | 161 |
| MS.gene013686.t1 | MTR_5g092600 | 40.773 | 233 | 128 | 5 | 6 | 233 | 11 | 238 | 1.26e-48 | 160 |
| MS.gene013686.t1 | MTR_6g007623 | 42.534 | 221 | 120 | 4 | 9 | 222 | 9 | 229 | 1.61e-48 | 160 |
| MS.gene013686.t1 | MTR_6g007637 | 43.750 | 208 | 113 | 4 | 9 | 213 | 13 | 219 | 1.33e-46 | 155 |
| MS.gene013686.t1 | MTR_5g067530 | 39.189 | 222 | 126 | 4 | 2 | 220 | 7 | 222 | 5.59e-44 | 149 |
| MS.gene013686.t1 | MTR_8g096310 | 35.135 | 222 | 138 | 3 | 9 | 227 | 13 | 231 | 1.85e-42 | 145 |
| MS.gene013686.t1 | MTR_3g098910 | 36.574 | 216 | 133 | 3 | 8 | 221 | 12 | 225 | 6.52e-42 | 145 |
| MS.gene013686.t1 | MTR_4g106990 | 41.624 | 197 | 114 | 1 | 26 | 221 | 36 | 232 | 2.07e-40 | 139 |
| MS.gene013686.t1 | MTR_8g096320 | 35.841 | 226 | 139 | 4 | 8 | 231 | 12 | 233 | 3.64e-40 | 139 |
| MS.gene013686.t1 | MTR_2g007890 | 37.443 | 219 | 128 | 4 | 8 | 222 | 15 | 228 | 4.23e-39 | 137 |
| MS.gene013686.t1 | MTR_7g405730 | 39.512 | 205 | 121 | 2 | 8 | 211 | 12 | 214 | 4.54e-38 | 134 |
| MS.gene013686.t1 | MTR_7g405710 | 36.667 | 240 | 145 | 4 | 8 | 242 | 12 | 249 | 5.74e-38 | 134 |
| MS.gene013686.t1 | MTR_8g099730 | 36.702 | 188 | 112 | 3 | 57 | 238 | 6 | 192 | 1.61e-37 | 130 |
| MS.gene013686.t1 | MTR_3g098930 | 37.158 | 183 | 114 | 1 | 8 | 190 | 13 | 194 | 3.96e-33 | 119 |
| MS.gene013686.t1 | MTR_6g007610 | 35.193 | 233 | 129 | 6 | 9 | 226 | 12 | 237 | 1.30e-30 | 114 |
| MS.gene013686.t1 | MTR_8g096320 | 35.802 | 162 | 101 | 2 | 71 | 231 | 19 | 178 | 2.52e-29 | 109 |
| MS.gene013686.t1 | MTR_6g034600 | 41.489 | 94 | 51 | 1 | 106 | 199 | 3 | 92 | 5.16e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013686.t1 | AT1G21460 | 69.512 | 246 | 72 | 1 | 1 | 246 | 1 | 243 | 1.43e-122 | 348 |
| MS.gene013686.t1 | AT1G21460 | 75.789 | 190 | 46 | 0 | 1 | 190 | 1 | 190 | 3.58e-102 | 295 |
| MS.gene013686.t1 | AT5G53190 | 44.255 | 235 | 128 | 2 | 2 | 233 | 3 | 237 | 8.39e-65 | 202 |
| MS.gene013686.t1 | AT3G14770 | 45.815 | 227 | 111 | 2 | 2 | 228 | 15 | 229 | 4.33e-55 | 177 |
| MS.gene013686.t1 | AT4G15920 | 43.348 | 233 | 124 | 5 | 1 | 228 | 1 | 230 | 1.01e-54 | 176 |
| MS.gene013686.t1 | AT5G62850 | 40.435 | 230 | 132 | 3 | 4 | 230 | 7 | 234 | 2.86e-53 | 172 |
| MS.gene013686.t1 | AT1G66770 | 43.111 | 225 | 119 | 4 | 9 | 230 | 14 | 232 | 2.62e-52 | 171 |
| MS.gene013686.t1 | AT4G10850 | 39.689 | 257 | 141 | 6 | 1 | 243 | 1 | 257 | 1.72e-51 | 168 |
| MS.gene013686.t1 | AT3G16690 | 42.857 | 217 | 116 | 4 | 7 | 219 | 7 | 219 | 1.52e-50 | 165 |
| MS.gene013686.t1 | AT3G16690 | 42.857 | 217 | 116 | 4 | 7 | 219 | 42 | 254 | 3.14e-50 | 165 |
| MS.gene013686.t1 | AT3G28007 | 46.667 | 210 | 109 | 3 | 2 | 209 | 5 | 213 | 5.34e-49 | 162 |
| MS.gene013686.t1 | AT5G40260 | 39.189 | 222 | 129 | 5 | 9 | 225 | 12 | 232 | 2.08e-45 | 152 |
| MS.gene013686.t1 | AT4G25010 | 38.462 | 234 | 137 | 4 | 2 | 229 | 6 | 238 | 2.14e-44 | 150 |
| MS.gene013686.t1 | AT5G50800 | 37.500 | 232 | 137 | 3 | 8 | 238 | 12 | 236 | 2.23e-44 | 151 |
| MS.gene013686.t1 | AT5G50790 | 40.488 | 205 | 117 | 3 | 8 | 210 | 12 | 213 | 2.60e-44 | 151 |
| MS.gene013686.t1 | AT5G62850 | 42.105 | 190 | 105 | 3 | 4 | 190 | 7 | 194 | 6.03e-43 | 145 |
| MS.gene013686.t1 | AT5G13170 | 35.470 | 234 | 136 | 5 | 8 | 239 | 14 | 234 | 6.04e-41 | 142 |
| MS.gene013686.t1 | AT5G23660 | 38.428 | 229 | 132 | 3 | 8 | 229 | 14 | 240 | 1.04e-40 | 141 |
| MS.gene013686.t1 | AT2G39060 | 36.818 | 220 | 133 | 3 | 7 | 225 | 11 | 225 | 5.55e-40 | 139 |
| MS.gene013686.t1 | AT3G48740 | 38.647 | 207 | 124 | 2 | 8 | 213 | 14 | 218 | 9.27e-39 | 136 |
| MS.gene013686.t1 | AT5G40260 | 39.791 | 191 | 109 | 5 | 9 | 194 | 12 | 201 | 7.00e-37 | 129 |
| MS.gene013686.t1 | AT3G16690 | 41.379 | 145 | 77 | 4 | 7 | 147 | 7 | 147 | 4.02e-24 | 95.9 |
Find 59 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGCTTTGTTCCTCTTCT+TGG | 0.090747 | 3.3:-75322895 | MS.gene013686:CDS |
| TAATGGTCTTGGTTCTGTTT+TGG | 0.179490 | 3.3:-75321291 | MS.gene013686:CDS |
| CATAAGATTGTTTCATTTGA+TGG | 0.195549 | 3.3:+75321162 | None:intergenic |
| TCCATTGATTCCTCTTCTAT+TGG | 0.234330 | 3.3:+75321203 | None:intergenic |
| TGTTTCTTTGCGGCACTTCA+TGG | 0.258501 | 3.3:-75321460 | MS.gene013686:CDS |
| TGGTTCTCCACTCTCAATTA+TGG | 0.317369 | 3.3:-75321726 | MS.gene013686:intron |
| CATCAAATGAAACAATCTTA+TGG | 0.323589 | 3.3:-75321161 | MS.gene013686:CDS |
| ATACCGGTAACAACAGTAAA+TGG | 0.331981 | 3.3:-75321953 | MS.gene013686:CDS |
| GGCACTTCATGGTTTATATT+CGG | 0.336382 | 3.3:-75321449 | MS.gene013686:CDS |
| GTCTCCCTCTTTGCCTTCCA+TGG | 0.339060 | 3.3:-75321806 | MS.gene013686:CDS |
| CAGAGAGTACCAAGGTGAAT+AGG | 0.345094 | 3.3:+75321849 | None:intergenic |
| GTGCCATTTACTGTTGTTAC+CGG | 0.352062 | 3.3:+75321950 | None:intergenic |
| TTGCCTTCCATGGCAATCAT+AGG | 0.381587 | 3.3:-75321796 | MS.gene013686:CDS |
| CATCATATTTGCACCTAAGA+AGG | 0.399786 | 3.3:-75321891 | MS.gene013686:CDS |
| TCGCTGTTTGTGTTTCTTTG+CGG | 0.403722 | 3.3:-75321470 | MS.gene013686:CDS |
| TTTCAGGTACCTAATGGTCT+TGG | 0.407841 | 3.3:-75321302 | MS.gene013686:intron |
| ACAGTAAATGGCACCGGAGC+AGG | 0.416818 | 3.3:-75321941 | MS.gene013686:CDS |
| AAAACAGAACCAAGACCATT+AGG | 0.423220 | 3.3:+75321293 | None:intergenic |
| AGAGAGTACCAAGGTGAATA+GGG | 0.429404 | 3.3:+75321850 | None:intergenic |
| TCAATTGTCTCCTTTCTGCT+TGG | 0.435363 | 3.3:-75322480 | MS.gene013686:intron |
| GGCCTTCTGCGGCTTTGCCA+TGG | 0.453114 | 3.3:-75321771 | MS.gene013686:CDS |
| TTGAGCAGTGTCATAACATA+TGG | 0.464848 | 3.3:+75322499 | None:intergenic |
| TGGCATGAACTCCACACTCT+TGG | 0.469786 | 3.3:+75321502 | None:intergenic |
| TGTTGTTACCGGTATGTTGT+TGG | 0.472054 | 3.3:+75321961 | None:intergenic |
| ACTAACTTACAGCAACAAAT+AGG | 0.474521 | 3.3:+75321411 | None:intergenic |
| GTTGTTACCGGTATGTTGTT+GGG | 0.478397 | 3.3:+75321962 | None:intergenic |
| GAATCAATGGAGATGGGTAA+TGG | 0.480093 | 3.3:-75321191 | MS.gene013686:CDS |
| TCTTATGGAAATGAAATTCA+AGG | 0.481566 | 3.3:-75321146 | MS.gene013686:CDS |
| TGGTTTATATTCGGTCTGCT+AGG | 0.491078 | 3.3:-75321440 | MS.gene013686:CDS |
| AGAAGAGGAATCAATGGAGA+TGG | 0.498039 | 3.3:-75321198 | MS.gene013686:CDS |
| TTGAAATACCTTTGTTGTCA+CGG | 0.503687 | 3.3:+75321237 | None:intergenic |
| TATGATTTCAATCCCTGCTC+CGG | 0.531246 | 3.3:+75321928 | None:intergenic |
| GAAGAGGAATCAATGGAGAT+GGG | 0.533130 | 3.3:-75321197 | MS.gene013686:CDS |
| ACAAACAGCGACAAGAAGAA+TGG | 0.536626 | 3.3:+75321482 | None:intergenic |
| ACCAATAGAAGAGGAATCAA+TGG | 0.540561 | 3.3:-75321204 | MS.gene013686:CDS |
| AGCTAGCTCACCAAGCAGAA+AGG | 0.551179 | 3.3:+75322470 | None:intergenic |
| TGTATAGGATTACATTCAAG+AGG | 0.558431 | 3.3:-75322561 | MS.gene013686:intron |
| AGCCATGGCAAAGCCGCAGA+AGG | 0.563128 | 3.3:+75321769 | None:intergenic |
| AATCTTTGCCCTATTCACCT+TGG | 0.568689 | 3.3:-75321858 | MS.gene013686:CDS |
| TGTGTCTCCCAACAACATAC+CGG | 0.568736 | 3.3:-75321969 | MS.gene013686:CDS |
| AGGCCTTCCTATGATTGCCA+TGG | 0.573899 | 3.3:+75321789 | None:intergenic |
| CTTCCTATGATTGCCATGGA+AGG | 0.577952 | 3.3:+75321793 | None:intergenic |
| CATACACAGGTGCCAAGAAG+AGG | 0.580321 | 3.3:+75322883 | None:intergenic |
| CAGTAAATGGCACCGGAGCA+GGG | 0.585691 | 3.3:-75321940 | MS.gene013686:CDS |
| TGGCTTACCATAATTGAGAG+TGG | 0.590723 | 3.3:+75321719 | None:intergenic |
| AAATCAGGCACCAATAGAAG+AGG | 0.597578 | 3.3:-75321213 | MS.gene013686:CDS |
| ATTGCCATGGAAGGCAAAGA+GGG | 0.598863 | 3.3:+75321802 | None:intergenic |
| GATTGCCATGGAAGGCAAAG+AGG | 0.600562 | 3.3:+75321801 | None:intergenic |
| GTAACAACAGTAAATGGCAC+CGG | 0.604393 | 3.3:-75321947 | MS.gene013686:CDS |
| ATGTTGTTGGGAGACACAAA+AGG | 0.620611 | 3.3:+75321974 | None:intergenic |
| CTTCCATGGCAATCATAGGA+AGG | 0.627717 | 3.3:-75321792 | MS.gene013686:CDS |
| TTCATATACCGTGACAACAA+AGG | 0.632876 | 3.3:-75321245 | MS.gene013686:CDS |
| AGTGATCAAAACCAAGAGTG+TGG | 0.637618 | 3.3:-75321513 | MS.gene013686:CDS |
| TGGAGAACCATACATGATGA+CGG | 0.640731 | 3.3:+75321739 | None:intergenic |
| TTACAGCAACAAATAGGTCA+CGG | 0.656357 | 3.3:+75321417 | None:intergenic |
| GATGACGGAAAATATAGCCA+TGG | 0.659780 | 3.3:+75321754 | None:intergenic |
| AATCATAGGAAGGCCTTCTG+CGG | 0.681842 | 3.3:-75321782 | MS.gene013686:CDS |
| TATGCCTGAAAATTTCTCTG+TGG | 0.709244 | 3.3:+75322522 | None:intergenic |
| AGAGAACACAGAGAGTACCA+AGG | 0.729090 | 3.3:+75321841 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACTTAAATATATTTATAAG+TGG | + | chr3.3:75321521-75321540 | None:intergenic | 15.0% |
| !! | AACAATTTACCATACAAAAT+TGG | + | chr3.3:75321805-75321824 | None:intergenic | 20.0% |
| !! | AATTTCAAATCCACAATAAA+TGG | + | chr3.3:75322627-75322646 | None:intergenic | 20.0% |
| !! | CTAGTATATGTCATTAATAT+TGG | + | chr3.3:75322568-75322587 | None:intergenic | 20.0% |
| !! | GGTCTTAAATATAAGTAAAA+AGG | - | chr3.3:75322791-75322810 | MS.gene013686:intron | 20.0% |
| !! | TTAAAAGCAAAAATATACCA+AGG | + | chr3.3:75322047-75322066 | None:intergenic | 20.0% |
| !! | TTTAATTGGAATATTTCGAA+AGG | - | chr3.3:75322081-75322100 | MS.gene013686:intron | 20.0% |
| !!! | AGATTTTTTTTTTCACAACA+AGG | + | chr3.3:75321220-75321239 | None:intergenic | 20.0% |
| !!! | CTCTTTTCTTATTTATTTTC+TGG | - | chr3.3:75321409-75321428 | MS.gene013686:intron | 20.0% |
| ! | AATCCTATACAAAACTCAAT+TGG | + | chr3.3:75321603-75321622 | None:intergenic | 25.0% |
| ! | AATTATGGTAAGCCAATTTA+CGG | - | chr3.3:75322462-75322481 | MS.gene013686:intron | 25.0% |
| ! | ATTTACCATACAAAATTGGA+AGG | + | chr3.3:75321801-75321820 | None:intergenic | 25.0% |
| ! | CATAAGATTGTTTCATTTGA+TGG | + | chr3.3:75323014-75323033 | None:intergenic | 25.0% |
| ! | CATCAAATGAAACAATCTTA+TGG | - | chr3.3:75323012-75323031 | MS.gene013686:intron | 25.0% |
| ! | TCTTATGGAAATGAAATTCA+AGG | - | chr3.3:75323027-75323046 | MS.gene013686:CDS | 25.0% |
| !! | TATGGTAAATTGTTGCTATT+TGG | - | chr3.3:75321811-75321830 | MS.gene013686:CDS | 25.0% |
| !!! | AGGGAATTTTATTACTTTTC+AGG | - | chr3.3:75322855-75322874 | MS.gene013686:intron | 25.0% |
| !!! | ATTTTGATCTTTTCCTTCTT+AGG | + | chr3.3:75322298-75322317 | None:intergenic | 25.0% |
| !!! | CAAAGGTATTTCAAAAAATC+AGG | - | chr3.3:75322945-75322964 | MS.gene013686:intron | 25.0% |
| !!! | CATCTTTTTTTTGGCATATT+TGG | - | chr3.3:75321154-75321173 | MS.gene013686:CDS | 25.0% |
| !!! | GTTTTATTTAATGTGAGACT+TGG | - | chr3.3:75321544-75321563 | MS.gene013686:intron | 25.0% |
| !!! | TATTGGACTTCTGAAAATTT+TGG | + | chr3.3:75322551-75322570 | None:intergenic | 25.0% |
| !!! | TCTTATTTATTTTCTGGTTC+CGG | - | chr3.3:75321415-75321434 | MS.gene013686:intron | 25.0% |
| !!! | TTAGTGCATTCAGTTTTAAT+TGG | - | chr3.3:75322067-75322086 | MS.gene013686:intron | 25.0% |
| !!! | TTTTTTTTGGCATATTTGGT+AGG | - | chr3.3:75321158-75321177 | MS.gene013686:CDS | 25.0% |
| ACTAACTTACAGCAACAAAT+AGG | + | chr3.3:75322765-75322784 | None:intergenic | 30.0% | |
| AGAAGTTAATTACACCATGA+TGG | + | chr3.3:75321860-75321879 | None:intergenic | 30.0% | |
| CAAGAACAAACTCATTGTAA+GGG | - | chr3.3:75322836-75322855 | MS.gene013686:intron | 30.0% | |
| CTTTAATAGGAACAAAACCT+TGG | - | chr3.3:75322027-75322046 | MS.gene013686:intron | 30.0% | |
| TCAAGAACAAACTCATTGTA+AGG | - | chr3.3:75322835-75322854 | MS.gene013686:intron | 30.0% | |
| TGAACATGACTGTCTTTAAT+AGG | - | chr3.3:75322014-75322033 | MS.gene013686:intron | 30.0% | |
| TGTATAGGATTACATTCAAG+AGG | - | chr3.3:75321612-75321631 | MS.gene013686:intron | 30.0% | |
| ! | AAATCCACAGAGAAATTTTC+AGG | - | chr3.3:75321647-75321666 | MS.gene013686:intron | 30.0% |
| ! | ATATTTTCCGTCATCATGTA+TGG | - | chr3.3:75322427-75322446 | MS.gene013686:intron | 30.0% |
| ! | CTTTTATGGTTAAACCTTAG+AGG | - | chr3.3:75321925-75321944 | MS.gene013686:CDS | 30.0% |
| ! | TACATGCATAGCATCTTTTA+TGG | - | chr3.3:75321911-75321930 | MS.gene013686:CDS | 30.0% |
| ! | TACTTATATTTAAGACCGAG+TGG | + | chr3.3:75322788-75322807 | None:intergenic | 30.0% |
| ! | TTGAAATACCTTTGTTGTCA+CGG | + | chr3.3:75322939-75322958 | None:intergenic | 30.0% |
| !! | TCTTAAATTAGAAGTGTTCG+TGG | + | chr3.3:75321358-75321377 | None:intergenic | 30.0% |
| !! | TGACCAATTGAGTTTTGTAT+AGG | - | chr3.3:75321597-75321616 | MS.gene013686:intron | 30.0% |
| !!! | AAATGGCATGTTTTGGAATT+TGG | + | chr3.3:75322610-75322629 | None:intergenic | 30.0% |
| !!! | ATTACTTTTCAGGTACCTAA+TGG | - | chr3.3:75322865-75322884 | MS.gene013686:intron | 30.0% |
| !!! | GATGTTGCACATCTTTTTTT+TGG | - | chr3.3:75321145-75321164 | MS.gene013686:CDS | 30.0% |
| AAAACAGAACCAAGACCATT+AGG | + | chr3.3:75322883-75322902 | None:intergenic | 35.0% | |
| AAAATCGTTGTGCCGTAAAT+TGG | + | chr3.3:75322477-75322496 | None:intergenic | 35.0% | |
| ACCAATAGAAGAGGAATCAA+TGG | - | chr3.3:75322969-75322988 | MS.gene013686:intron | 35.0% | |
| ATACCGGTAACAACAGTAAA+TGG | - | chr3.3:75322220-75322239 | MS.gene013686:intron | 35.0% | |
| CAGCTAAGTAATACATACAC+AGG | + | chr3.3:75321306-75321325 | None:intergenic | 35.0% | |
| CATCATATTTGCACCTAAGA+AGG | - | chr3.3:75322282-75322301 | MS.gene013686:intron | 35.0% | |
| GGCACTTCATGGTTTATATT+CGG | - | chr3.3:75322724-75322743 | MS.gene013686:intron | 35.0% | |
| GTGACTTGACACAAGATTTA+GGG | + | chr3.3:75321767-75321786 | None:intergenic | 35.0% | |
| TAACATAGTAGTACTAGAGC+CGG | + | chr3.3:75321437-75321456 | None:intergenic | 35.0% | |
| TATGCCTGAAAATTTCTCTG+TGG | + | chr3.3:75321654-75321673 | None:intergenic | 35.0% | |
| TGACTTGACACAAGATTTAG+GGG | + | chr3.3:75321766-75321785 | None:intergenic | 35.0% | |
| TTACAGCAACAAATAGGTCA+CGG | + | chr3.3:75322759-75322778 | None:intergenic | 35.0% | |
| TTCATATACCGTGACAACAA+AGG | - | chr3.3:75322928-75322947 | MS.gene013686:intron | 35.0% | |
| TTGAGCAGTGTCATAACATA+TGG | + | chr3.3:75321677-75321696 | None:intergenic | 35.0% | |
| ! | ATTTATAAGTGGTGACGAGT+TGG | + | chr3.3:75321510-75321529 | None:intergenic | 35.0% |
| ! | CCAAAACATGCCATTTATTG+TGG | - | chr3.3:75322614-75322633 | MS.gene013686:intron | 35.0% |
| ! | CCACAATAAATGGCATGTTT+TGG | + | chr3.3:75322617-75322636 | None:intergenic | 35.0% |
| ! | TGCTTCCTTCCAATTTTGTA+TGG | - | chr3.3:75321793-75321812 | MS.gene013686:CDS | 35.0% |
| !! | TCCATTGATTCCTCTTCTAT+TGG | + | chr3.3:75322973-75322992 | None:intergenic | 35.0% |
| !!! | AATGGTCTTGGTTCTGTTTT+GGG | - | chr3.3:75322883-75322902 | MS.gene013686:intron | 35.0% |
| !!! | TAATGGTCTTGGTTCTGTTT+TGG | - | chr3.3:75322882-75322901 | MS.gene013686:intron | 35.0% |
| AAATCAGGCACCAATAGAAG+AGG | - | chr3.3:75322960-75322979 | MS.gene013686:intron | 40.0% | |
| AATCTTTGCCCTATTCACCT+TGG | - | chr3.3:75322315-75322334 | MS.gene013686:intron | 40.0% | |
| ACAAACAGCGACAAGAAGAA+TGG | + | chr3.3:75322694-75322713 | None:intergenic | 40.0% | |
| ACTTGACACAAGATTTAGGG+GGG | + | chr3.3:75321764-75321783 | None:intergenic | 40.0% | |
| AGAAGAGGAATCAATGGAGA+TGG | - | chr3.3:75322975-75322994 | MS.gene013686:intron | 40.0% | |
| AGTGATCAAAACCAAGAGTG+TGG | - | chr3.3:75322660-75322679 | MS.gene013686:intron | 40.0% | |
| ATGTTGTTGGGAGACACAAA+AGG | + | chr3.3:75322202-75322221 | None:intergenic | 40.0% | |
| CGTGACTTGACACAAGATTT+AGG | + | chr3.3:75321768-75321787 | None:intergenic | 40.0% | |
| GAAGAGGAATCAATGGAGAT+GGG | - | chr3.3:75322976-75322995 | MS.gene013686:intron | 40.0% | |
| GAAGCAAAAGGAGAAACAGT+TGG | + | chr3.3:75321838-75321857 | None:intergenic | 40.0% | |
| GAATCAATGGAGATGGGTAA+TGG | - | chr3.3:75322982-75323001 | MS.gene013686:intron | 40.0% | |
| GACTTGACACAAGATTTAGG+GGG | + | chr3.3:75321765-75321784 | None:intergenic | 40.0% | |
| GCAATGTGGTGAATTTAGGT+TGG | - | chr3.3:75321951-75321970 | MS.gene013686:CDS | 40.0% | |
| GCATGCAATGTGGTGAATTT+AGG | - | chr3.3:75321947-75321966 | MS.gene013686:CDS | 40.0% | |
| GTAACAACAGTAAATGGCAC+CGG | - | chr3.3:75322226-75322245 | MS.gene013686:intron | 40.0% | |
| GTTGTTACCGGTATGTTGTT+GGG | + | chr3.3:75322214-75322233 | None:intergenic | 40.0% | |
| TATGATTTCAATCCCTGCTC+CGG | + | chr3.3:75322248-75322267 | None:intergenic | 40.0% | |
| TCAATTGTCTCCTTTCTGCT+TGG | - | chr3.3:75321693-75321712 | MS.gene013686:intron | 40.0% | |
| TCGCTGTTTGTGTTTCTTTG+CGG | - | chr3.3:75322703-75322722 | MS.gene013686:intron | 40.0% | |
| TCTCACAGCTTCTTCTTTGT+TGG | - | chr3.3:75321243-75321262 | MS.gene013686:CDS | 40.0% | |
| TGGAGAACCATACATGATGA+CGG | + | chr3.3:75322437-75322456 | None:intergenic | 40.0% | |
| TGGCTTACCATAATTGAGAG+TGG | + | chr3.3:75322457-75322476 | None:intergenic | 40.0% | |
| TGGTTCTCCACTCTCAATTA+TGG | - | chr3.3:75322447-75322466 | MS.gene013686:intron | 40.0% | |
| TGGTTTATATTCGGTCTGCT+AGG | - | chr3.3:75322733-75322752 | MS.gene013686:intron | 40.0% | |
| TGTTGTTACCGGTATGTTGT+TGG | + | chr3.3:75322215-75322234 | None:intergenic | 40.0% | |
| TTGCTGTAAGTTAGTCCACT+CGG | - | chr3.3:75322770-75322789 | MS.gene013686:intron | 40.0% | |
| ! | TACACCATGATGGAAGCAAA+AGG | + | chr3.3:75321850-75321869 | None:intergenic | 40.0% |
| ! | TTCTCCTTTTGCTTCCATCA+TGG | - | chr3.3:75321843-75321862 | MS.gene013686:CDS | 40.0% |
| ! | TTCTGCTTTGTTCCTCTTCT+TGG | - | chr3.3:75321278-75321297 | MS.gene013686:CDS | 40.0% |
| ! | TTTCAGGTACCTAATGGTCT+TGG | - | chr3.3:75322871-75322890 | MS.gene013686:intron | 40.0% |
| !! | AGAGAGTACCAAGGTGAATA+GGG | + | chr3.3:75322326-75322345 | None:intergenic | 40.0% |
| !! | AGCTTCTTCTTTGTTGGTTC+AGG | - | chr3.3:75321249-75321268 | MS.gene013686:CDS | 40.0% |
| !! | GATGACGGAAAATATAGCCA+TGG | + | chr3.3:75322422-75322441 | None:intergenic | 40.0% |
| !! | GCTTCTTCTTTGTTGGTTCA+GGG | - | chr3.3:75321250-75321269 | MS.gene013686:CDS | 40.0% |
| !! | GTGCCATTTACTGTTGTTAC+CGG | + | chr3.3:75322226-75322245 | None:intergenic | 40.0% |
| !!! | ATGGTCTTGGTTCTGTTTTG+GGG | - | chr3.3:75322884-75322903 | MS.gene013686:intron | 40.0% |
| AATCATAGGAAGGCCTTCTG+CGG | - | chr3.3:75322391-75322410 | MS.gene013686:intron | 45.0% | |
| ATTCCCAACATCCACAGGTA+CGG | - | chr3.3:75322172-75322191 | MS.gene013686:intron | 45.0% | |
| ATTGCCATGGAAGGCAAAGA+GGG | + | chr3.3:75322374-75322393 | None:intergenic | 45.0% | |
| CTTCCATGGCAATCATAGGA+AGG | - | chr3.3:75322381-75322400 | MS.gene013686:intron | 45.0% | |
| CTTCCTATGATTGCCATGGA+AGG | + | chr3.3:75322383-75322402 | None:intergenic | 45.0% | |
| TCCTTCACTAGTCCAAGAAG+AGG | - | chr3.3:75322106-75322125 | MS.gene013686:intron | 45.0% | |
| TGTGTCTCCCAACAACATAC+CGG | - | chr3.3:75322204-75322223 | MS.gene013686:intron | 45.0% | |
| TGTTTCTTTGCGGCACTTCA+TGG | - | chr3.3:75322713-75322732 | MS.gene013686:intron | 45.0% | |
| TTCTGATTCCCAACATCCAC+AGG | - | chr3.3:75322167-75322186 | MS.gene013686:intron | 45.0% | |
| TTGCCTTCCATGGCAATCAT+AGG | - | chr3.3:75322377-75322396 | MS.gene013686:intron | 45.0% | |
| ! | AACCTTAGAGGCATGCAATG+TGG | - | chr3.3:75321937-75321956 | MS.gene013686:CDS | 45.0% |
| !! | ACCTCTTCTTGGACTAGTGA+AGG | + | chr3.3:75322110-75322129 | None:intergenic | 45.0% |
| !! | AGAGAACACAGAGAGTACCA+AGG | + | chr3.3:75322335-75322354 | None:intergenic | 45.0% |
| !! | CAGAGAGTACCAAGGTGAAT+AGG | + | chr3.3:75322327-75322346 | None:intergenic | 45.0% |
| AGACCGTACCTGTGGATGTT+GGG | + | chr3.3:75322178-75322197 | None:intergenic | 50.0% | |
| AGCTAGCTCACCAAGCAGAA+AGG | + | chr3.3:75321706-75321725 | None:intergenic | 50.0% | |
| AGGCCTTCCTATGATTGCCA+TGG | + | chr3.3:75322387-75322406 | None:intergenic | 50.0% | |
| CACCACATTGCATGCCTCTA+AGG | + | chr3.3:75321942-75321961 | None:intergenic | 50.0% | |
| CATACACAGGTGCCAAGAAG+AGG | + | chr3.3:75321293-75321312 | None:intergenic | 50.0% | |
| CGTACACACACACCTCTTCT+TGG | + | chr3.3:75322121-75322140 | None:intergenic | 50.0% | |
| GATTGCCATGGAAGGCAAAG+AGG | + | chr3.3:75322375-75322394 | None:intergenic | 50.0% | |
| TGGCATGAACTCCACACTCT+TGG | + | chr3.3:75322674-75322693 | None:intergenic | 50.0% | |
| !!! | GTGGTGACGAGTTGGTTTTG+AGG | + | chr3.3:75321502-75321521 | None:intergenic | 50.0% |
| CAAAAGGCAGACCGTACCTG+TGG | + | chr3.3:75322186-75322205 | None:intergenic | 55.0% | |
| CAGACCGTACCTGTGGATGT+TGG | + | chr3.3:75322179-75322198 | None:intergenic | 55.0% | |
| GTCTCCCTCTTTGCCTTCCA+TGG | - | chr3.3:75322367-75322386 | MS.gene013686:intron | 55.0% | |
| ! | ACAGTAAATGGCACCGGAGC+AGG | - | chr3.3:75322232-75322251 | MS.gene013686:intron | 55.0% |
| ! | CAGTAAATGGCACCGGAGCA+GGG | - | chr3.3:75322233-75322252 | MS.gene013686:intron | 55.0% |
| AGCCATGGCAAAGCCGCAGA+AGG | + | chr3.3:75322407-75322426 | None:intergenic | 60.0% | |
| GGCCTTCTGCGGCTTTGCCA+TGG | - | chr3.3:75322402-75322421 | MS.gene013686:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 75321142 | 75323053 | 75321142 | ID=MS.gene013686 |
| chr3.3 | mRNA | 75321142 | 75323053 | 75321142 | ID=MS.gene013686.t1;Parent=MS.gene013686 |
| chr3.3 | exon | 75323020 | 75323053 | 75323020 | ID=MS.gene013686.t1.exon1;Parent=MS.gene013686.t1 |
| chr3.3 | CDS | 75323020 | 75323053 | 75323020 | ID=cds.MS.gene013686.t1;Parent=MS.gene013686.t1 |
| chr3.3 | exon | 75322888 | 75322924 | 75322888 | ID=MS.gene013686.t1.exon2;Parent=MS.gene013686.t1 |
| chr3.3 | CDS | 75322888 | 75322924 | 75322888 | ID=cds.MS.gene013686.t1;Parent=MS.gene013686.t1 |
| chr3.3 | exon | 75322481 | 75322576 | 75322481 | ID=MS.gene013686.t1.exon3;Parent=MS.gene013686.t1 |
| chr3.3 | CDS | 75322481 | 75322576 | 75322481 | ID=cds.MS.gene013686.t1;Parent=MS.gene013686.t1 |
| chr3.3 | exon | 75321727 | 75322006 | 75321727 | ID=MS.gene013686.t1.exon4;Parent=MS.gene013686.t1 |
| chr3.3 | CDS | 75321727 | 75322006 | 75321727 | ID=cds.MS.gene013686.t1;Parent=MS.gene013686.t1 |
| chr3.3 | exon | 75321421 | 75321540 | 75321421 | ID=MS.gene013686.t1.exon5;Parent=MS.gene013686.t1 |
| chr3.3 | CDS | 75321421 | 75321540 | 75321421 | ID=cds.MS.gene013686.t1;Parent=MS.gene013686.t1 |
| chr3.3 | exon | 75321142 | 75321318 | 75321142 | ID=MS.gene013686.t1.exon6;Parent=MS.gene013686.t1 |
| chr3.3 | CDS | 75321142 | 75321318 | 75321142 | ID=cds.MS.gene013686.t1;Parent=MS.gene013686.t1 |
| Gene Sequence |
| Protein sequence |
