Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026934.t1 | XP_013450818.1 | 81.3 | 241 | 37 | 3 | 1 | 241 | 1 | 233 | 4.20E-102 | 380.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026934.t1 | A2YZ24 | 58.4 | 238 | 95 | 2 | 1 | 238 | 1 | 234 | 3.5e-73 | 276.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026934.t1 | A0A072U6Z0 | 81.3 | 241 | 37 | 3 | 1 | 241 | 1 | 233 | 3.1e-102 | 380.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048962 | MS.gene026934 | PPI |
| MS.gene044269 | MS.gene026934 | PPI |
| MS.gene009331 | MS.gene026934 | PPI |
| MS.gene31850 | MS.gene026934 | PPI |
| MS.gene90281 | MS.gene026934 | PPI |
| MS.gene69746 | MS.gene026934 | PPI |
| MS.gene026934 | MS.gene93151 | PPI |
| MS.gene02646 | MS.gene026934 | PPI |
| MS.gene013686 | MS.gene026934 | PPI |
| MS.gene02493 | MS.gene026934 | PPI |
| MS.gene026934 | MS.gene70529 | PPI |
| MS.gene026934 | MS.gene81949 | PPI |
| MS.gene026934 | MS.gene46188 | PPI |
| MS.gene026934 | MS.gene25769 | PPI |
| MS.gene52346 | MS.gene026934 | PPI |
| MS.gene026679 | MS.gene026934 | PPI |
| MS.gene009329 | MS.gene026934 | PPI |
| MS.gene55828 | MS.gene026934 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026934.t1 | MTR_6g007633 | 84.647 | 241 | 31 | 2 | 1 | 241 | 1 | 235 | 6.18e-144 | 402 |
| MS.gene026934.t1 | MTR_6g007623 | 81.328 | 241 | 37 | 3 | 1 | 241 | 1 | 233 | 3.31e-135 | 380 |
| MS.gene026934.t1 | MTR_6g007637 | 75.455 | 220 | 51 | 1 | 1 | 220 | 2 | 218 | 8.78e-119 | 339 |
| MS.gene026934.t1 | MTR_6g007610 | 55.285 | 246 | 92 | 3 | 1 | 235 | 1 | 239 | 6.39e-90 | 265 |
| MS.gene026934.t1 | MTR_8g099730 | 51.082 | 231 | 101 | 3 | 6 | 228 | 16 | 242 | 2.26e-75 | 229 |
| MS.gene026934.t1 | MTR_3g080990 | 52.402 | 229 | 105 | 3 | 1 | 229 | 1 | 225 | 2.37e-73 | 224 |
| MS.gene026934.t1 | MTR_4g106990 | 54.726 | 201 | 85 | 3 | 28 | 228 | 35 | 229 | 1.88e-63 | 198 |
| MS.gene026934.t1 | MTR_1g029380 | 45.116 | 215 | 113 | 4 | 10 | 224 | 7 | 216 | 1.11e-50 | 166 |
| MS.gene026934.t1 | MTR_8g099730 | 48.333 | 180 | 81 | 3 | 57 | 228 | 3 | 178 | 1.39e-50 | 164 |
| MS.gene026934.t1 | MTR_3g089125 | 44.344 | 221 | 110 | 5 | 12 | 232 | 9 | 216 | 1.62e-50 | 165 |
| MS.gene026934.t1 | MTR_2g436310 | 46.729 | 214 | 106 | 5 | 11 | 224 | 8 | 213 | 1.11e-49 | 163 |
| MS.gene026934.t1 | MTR_8g042490 | 38.667 | 225 | 129 | 4 | 8 | 232 | 14 | 229 | 1.55e-45 | 152 |
| MS.gene026934.t1 | MTR_1g028460 | 39.655 | 232 | 129 | 4 | 5 | 229 | 3 | 230 | 4.83e-44 | 149 |
| MS.gene026934.t1 | MTR_2g073190 | 38.839 | 224 | 131 | 4 | 6 | 229 | 12 | 229 | 2.19e-42 | 152 |
| MS.gene026934.t1 | MTR_8g096310 | 35.294 | 221 | 134 | 5 | 10 | 229 | 11 | 223 | 1.71e-39 | 138 |
| MS.gene026934.t1 | MTR_5g067530 | 38.942 | 208 | 121 | 4 | 10 | 217 | 12 | 213 | 6.54e-39 | 136 |
| MS.gene026934.t1 | MTR_8g096320 | 39.167 | 240 | 125 | 5 | 10 | 234 | 11 | 244 | 7.77e-39 | 135 |
| MS.gene026934.t1 | MTR_3g098910 | 36.239 | 218 | 132 | 4 | 12 | 229 | 13 | 223 | 1.01e-37 | 134 |
| MS.gene026934.t1 | MTR_3g090940 | 33.913 | 230 | 144 | 4 | 4 | 231 | 2 | 225 | 1.27e-37 | 132 |
| MS.gene026934.t1 | MTR_5g092600 | 38.785 | 214 | 120 | 6 | 12 | 223 | 14 | 218 | 4.61e-37 | 130 |
| MS.gene026934.t1 | MTR_3g090950 | 34.783 | 230 | 142 | 4 | 4 | 231 | 2 | 225 | 4.26e-36 | 128 |
| MS.gene026934.t1 | MTR_2g007890 | 34.951 | 206 | 127 | 4 | 12 | 217 | 16 | 214 | 6.65e-35 | 126 |
| MS.gene026934.t1 | MTR_7g007490 | 36.364 | 220 | 133 | 5 | 10 | 229 | 12 | 224 | 4.99e-34 | 123 |
| MS.gene026934.t1 | MTR_7g405710 | 35.498 | 231 | 135 | 7 | 12 | 241 | 13 | 230 | 4.37e-33 | 121 |
| MS.gene026934.t1 | MTR_3g098930 | 39.572 | 187 | 107 | 4 | 10 | 196 | 12 | 192 | 3.41e-31 | 114 |
| MS.gene026934.t1 | MTR_7g405730 | 34.434 | 212 | 129 | 5 | 12 | 221 | 13 | 216 | 8.35e-30 | 112 |
| MS.gene026934.t1 | MTR_8g096320 | 35.751 | 193 | 103 | 5 | 57 | 234 | 3 | 189 | 3.53e-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026934.t1 | AT5G62850 | 54.783 | 230 | 99 | 3 | 1 | 229 | 1 | 226 | 4.09e-83 | 248 |
| MS.gene026934.t1 | AT4G10850 | 48.945 | 237 | 118 | 2 | 5 | 241 | 7 | 240 | 1.63e-78 | 237 |
| MS.gene026934.t1 | AT3G28007 | 59.633 | 218 | 84 | 2 | 1 | 218 | 1 | 214 | 1.06e-77 | 235 |
| MS.gene026934.t1 | AT5G62850 | 54.455 | 202 | 88 | 2 | 1 | 202 | 1 | 198 | 1.21e-72 | 221 |
| MS.gene026934.t1 | AT5G40260 | 51.376 | 218 | 105 | 1 | 1 | 218 | 1 | 217 | 1.72e-71 | 218 |
| MS.gene026934.t1 | AT1G66770 | 46.725 | 229 | 119 | 2 | 5 | 233 | 7 | 232 | 1.13e-68 | 212 |
| MS.gene026934.t1 | AT5G40260 | 50.990 | 202 | 98 | 1 | 1 | 202 | 1 | 201 | 4.04e-66 | 204 |
| MS.gene026934.t1 | AT4G15920 | 43.478 | 207 | 112 | 3 | 11 | 217 | 8 | 209 | 2.39e-53 | 172 |
| MS.gene026934.t1 | AT1G21460 | 44.444 | 225 | 120 | 4 | 5 | 229 | 2 | 221 | 1.21e-51 | 168 |
| MS.gene026934.t1 | AT3G16690 | 38.393 | 224 | 131 | 4 | 11 | 234 | 8 | 224 | 2.68e-47 | 156 |
| MS.gene026934.t1 | AT3G16690 | 38.393 | 224 | 131 | 4 | 11 | 234 | 43 | 259 | 4.88e-47 | 157 |
| MS.gene026934.t1 | AT1G21460 | 44.388 | 196 | 104 | 4 | 4 | 199 | 1 | 191 | 1.61e-43 | 146 |
| MS.gene026934.t1 | AT5G13170 | 34.821 | 224 | 139 | 4 | 1 | 224 | 4 | 220 | 4.99e-42 | 145 |
| MS.gene026934.t1 | AT3G14770 | 36.842 | 228 | 136 | 4 | 5 | 232 | 11 | 230 | 3.30e-41 | 141 |
| MS.gene026934.t1 | AT5G50800 | 37.668 | 223 | 131 | 5 | 10 | 229 | 11 | 228 | 1.98e-40 | 140 |
| MS.gene026934.t1 | AT5G23660 | 37.719 | 228 | 135 | 5 | 10 | 236 | 13 | 234 | 3.66e-40 | 140 |
| MS.gene026934.t1 | AT4G25010 | 36.449 | 214 | 131 | 4 | 1 | 214 | 2 | 210 | 8.07e-39 | 136 |
| MS.gene026934.t1 | AT3G48740 | 36.404 | 228 | 138 | 5 | 10 | 236 | 13 | 234 | 1.58e-38 | 135 |
| MS.gene026934.t1 | AT5G53190 | 38.498 | 213 | 125 | 3 | 7 | 217 | 5 | 213 | 1.17e-37 | 132 |
| MS.gene026934.t1 | AT5G50790 | 32.889 | 225 | 145 | 4 | 2 | 226 | 3 | 221 | 1.87e-37 | 133 |
| MS.gene026934.t1 | AT2G39060 | 34.419 | 215 | 133 | 4 | 12 | 226 | 13 | 219 | 5.28e-31 | 115 |
| MS.gene026934.t1 | AT3G16690 | 31.795 | 195 | 123 | 4 | 11 | 205 | 8 | 192 | 2.03e-24 | 96.7 |
Find 64 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTTCTTCTTGGAATTCT+TGG | 0.104803 | 6.3:+3272513 | None:intergenic |
| CATTGTTGAATTGTGCATTT+TGG | 0.177365 | 6.3:-3272645 | MS.gene026934:CDS |
| TCTCTAATTTCAGAAGTATA+TGG | 0.230735 | 6.3:-3272343 | MS.gene026934:intron |
| ACGCACCCTTCCTTTCTTCT+TGG | 0.244879 | 6.3:+3272504 | None:intergenic |
| TTCAACAATGTTGCTAAGTA+TGG | 0.264358 | 6.3:+3272658 | None:intergenic |
| CGTAACGTTGTTGGTATCAT+AGG | 0.284067 | 6.3:-3273684 | MS.gene026934:intron |
| CCCCTTTGACCTTTATGTTC+TGG | 0.317767 | 6.3:-3271967 | MS.gene026934:intron |
| TACCAACAATTAAAGACCTT+TGG | 0.329584 | 6.3:+3272244 | None:intergenic |
| TTGATAATCTTGTAGAAAGT+TGG | 0.335730 | 6.3:+3272712 | None:intergenic |
| GTGTGAAATACATGCCATTC+TGG | 0.340578 | 6.3:-3272046 | MS.gene026934:CDS |
| TCATACTATATGGCTATTAC+TGG | 0.341787 | 6.3:-3271774 | MS.gene026934:CDS |
| ACTATTCAGCTCATACTATA+TGG | 0.346925 | 6.3:-3271784 | MS.gene026934:CDS |
| CTCTAATTTCAGAAGTATAT+GGG | 0.350155 | 6.3:-3272342 | MS.gene026934:intron |
| TGTGCACCCAAACAGCCTTT+TGG | 0.359306 | 6.3:-3272602 | MS.gene026934:CDS |
| ACTTCTGCAATGGACTTTGC+TGG | 0.366094 | 6.3:-3272010 | MS.gene026934:CDS |
| AATGTTGCTAAGTATGGATC+TGG | 0.369740 | 6.3:+3272664 | None:intergenic |
| GTGACGACCAAAAGGCTGTT+TGG | 0.401052 | 6.3:+3272595 | None:intergenic |
| AACAAGTCCAACACCATTGA+TGG | 0.405041 | 6.3:+3272573 | None:intergenic |
| ACCAACAATTAAAGACCTTT+GGG | 0.405429 | 6.3:+3272245 | None:intergenic |
| AGGCTGTTTGGGTGCACAAA+AGG | 0.410351 | 6.3:+3272607 | None:intergenic |
| GATCAGACTGCAGTCGCAAC+TGG | 0.411701 | 6.3:+3271700 | None:intergenic |
| AAATCAGATTGATGATGATA+AGG | 0.420470 | 6.3:-3271740 | MS.gene026934:CDS |
| TGGCATGTATTTCACACTCT+TGG | 0.431195 | 6.3:+3272052 | None:intergenic |
| ACCAGAACATAAAGGTCAAA+GGG | 0.444154 | 6.3:+3271966 | None:intergenic |
| TTGCAGATCAGCAATGGTAT+TGG | 0.445462 | 6.3:-3271820 | MS.gene026934:intron |
| CTACAAGATTATCAAGAAGA+AGG | 0.445823 | 6.3:-3272704 | MS.gene026934:CDS |
| TCAGTGATTCGTAACGTTGT+TGG | 0.451760 | 6.3:-3273693 | MS.gene026934:CDS |
| ACCCAAAGGTCTTTAATTGT+TGG | 0.456975 | 6.3:-3272246 | MS.gene026934:CDS |
| ACTGCAGTCGCAACTGGAGC+TGG | 0.457083 | 6.3:+3271706 | None:intergenic |
| CATGCCATTCTGGCTCTCTC+TGG | 0.459353 | 6.3:-3272036 | MS.gene026934:CDS |
| TGCTTCTCCTCTTACGATCA+TGG | 0.464189 | 6.3:-3272190 | MS.gene026934:intron |
| TATATGGCTATTACTGGTGC+AGG | 0.465242 | 6.3:-3271768 | MS.gene026934:CDS |
| AATCAGATTGATGATGATAA+GGG | 0.471988 | 6.3:-3271739 | MS.gene026934:CDS |
| GTCGCAACTGGAGCTGGACC+TGG | 0.487021 | 6.3:+3271712 | None:intergenic |
| GTCGTCACCATCAATGGTGT+TGG | 0.498613 | 6.3:-3272580 | MS.gene026934:CDS |
| CATTGATGGTGACGACCAAA+AGG | 0.503896 | 6.3:+3272587 | None:intergenic |
| CAATTAAAGACCTTTGGGTA+TGG | 0.506371 | 6.3:+3272250 | None:intergenic |
| TTACTTACCATGATCGTAAG+AGG | 0.508164 | 6.3:+3272183 | None:intergenic |
| TCCAAGAATTCCAAGAAGAA+AGG | 0.508774 | 6.3:-3272514 | MS.gene026934:CDS |
| AATAAATTACCAGAACATAA+AGG | 0.509442 | 6.3:+3271958 | None:intergenic |
| GGCTATTACTGGTGCAGGGG+AGG | 0.516094 | 6.3:-3271763 | MS.gene026934:CDS |
| GATGATGATAAGGGTGGTCC+AGG | 0.518060 | 6.3:-3271730 | MS.gene026934:CDS |
| AATGGTATTGGAGTAATCTC+TGG | 0.518369 | 6.3:-3271808 | MS.gene026934:CDS |
| TGACGACCAAAAGGCTGTTT+GGG | 0.519716 | 6.3:+3272596 | None:intergenic |
| TACCAGAACATAAAGGTCAA+AGG | 0.528400 | 6.3:+3271965 | None:intergenic |
| GGGGATTATTCTTCTCATTG+AGG | 0.533263 | 6.3:-3272322 | MS.gene026934:CDS |
| ATAACAGAGTTGGCACTACA+TGG | 0.538105 | 6.3:-3272273 | MS.gene026934:CDS |
| CATTGTTCTGATAACAGAGT+TGG | 0.552416 | 6.3:-3272283 | MS.gene026934:CDS |
| GATTATCAAGAAGAAGGATG+TGG | 0.554099 | 6.3:-3272698 | MS.gene026934:CDS |
| TCTAATTTCAGAAGTATATG+GGG | 0.558102 | 6.3:-3272341 | MS.gene026934:intron |
| TTAGCCAGAGAGAGCCAGAA+TGG | 0.559920 | 6.3:+3272032 | None:intergenic |
| AGAATTCCAAGAAGAAAGGA+AGG | 0.564362 | 6.3:-3272510 | MS.gene026934:CDS |
| TCTCTGGCTAACTTCTGCAA+TGG | 0.569392 | 6.3:-3272020 | MS.gene026934:CDS |
| CAACGTTACGAATCACTGAC+TGG | 0.576683 | 6.3:+3273697 | None:intergenic |
| ATATGGCTATTACTGGTGCA+GGG | 0.590867 | 6.3:-3271767 | MS.gene026934:CDS |
| TGAATATTGCAGATCAGCAA+TGG | 0.603008 | 6.3:-3271826 | MS.gene026934:intron |
| CACTACATGGCCATACCCAA+AGG | 0.608199 | 6.3:-3272260 | MS.gene026934:CDS |
| GAACATAAAGGTCAAAGGGG+TGG | 0.619001 | 6.3:+3271970 | None:intergenic |
| CAACTCTGTTATCAGAACAA+TGG | 0.647388 | 6.3:+3272284 | None:intergenic |
| TATGGCTATTACTGGTGCAG+GGG | 0.648799 | 6.3:-3271766 | MS.gene026934:CDS |
| ATGTTGCTAAGTATGGATCT+GGG | 0.654732 | 6.3:+3272665 | None:intergenic |
| CAGATTGATGATGATAAGGG+TGG | 0.669162 | 6.3:-3271736 | MS.gene026934:CDS |
| GAATTCCAAGAAGAAAGGAA+GGG | 0.672405 | 6.3:-3272509 | MS.gene026934:intron |
| CCAGAACATAAAGGTCAAAG+GGG | 0.687128 | 6.3:+3271967 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTATTATGATTTTG+TGG | - | chr6.3:3272196-3272215 | MS.gene026934:CDS | 10.0% |
| !! | ATGATCTGAATATAAATTAA+TGG | + | chr6.3:3273258-3273277 | None:intergenic | 15.0% |
| !!! | ATAATCATATTTAGTTCAAT+TGG | - | chr6.3:3273512-3273531 | MS.gene026934:intron | 15.0% |
| !!! | ATATCTGTGATTTTTTTTTT+TGG | - | chr6.3:3272156-3272175 | MS.gene026934:intron | 15.0% |
| !! | AATAAATTACCAGAACATAA+AGG | + | chr6.3:3273452-3273471 | None:intergenic | 20.0% |
| !!! | AAGATATTGTTTTCAACTTT+TGG | - | chr6.3:3272585-3272604 | MS.gene026934:CDS | 20.0% |
| ! | AAATATAGCTGGTATACTTA+AGG | + | chr6.3:3272276-3272295 | None:intergenic | 25.0% |
| ! | AATAAAAAAACAATGTCACG+TGG | - | chr6.3:3272352-3272371 | MS.gene026934:intron | 25.0% |
| ! | CTTGGAATAGATAAAAAAGA+TGG | + | chr6.3:3272879-3272898 | None:intergenic | 25.0% |
| ! | TAACACATCATGAACTAATT+AGG | + | chr6.3:3272963-3272982 | None:intergenic | 25.0% |
| ! | TAATTAGTTCATGATGTGTT+AGG | - | chr6.3:3272962-3272981 | MS.gene026934:intron | 25.0% |
| !! | ATTGTTGAATTGTGCATTTT+GGG | - | chr6.3:3272763-3272782 | MS.gene026934:intron | 25.0% |
| !! | CTCTAATTTCAGAAGTATAT+GGG | - | chr6.3:3273065-3273084 | MS.gene026934:intron | 25.0% |
| !! | TCTAATTTCAGAAGTATATG+GGG | - | chr6.3:3273066-3273085 | MS.gene026934:intron | 25.0% |
| !! | TCTCTAATTTCAGAAGTATA+TGG | - | chr6.3:3273064-3273083 | MS.gene026934:intron | 25.0% |
| !! | TTACGTGAATATAGTTGTTT+TGG | - | chr6.3:3272023-3272042 | MS.gene026934:CDS | 25.0% |
| !! | TTGATAATCTTGTAGAAAGT+TGG | + | chr6.3:3272698-3272717 | None:intergenic | 25.0% |
| !! | TTTTGTGAAATTTGAATGCA+GGG | - | chr6.3:3271936-3271955 | MS.gene026934:intron | 25.0% |
| !! | TTTTTGTGAAATTTGAATGC+AGG | - | chr6.3:3271935-3271954 | MS.gene026934:intron | 25.0% |
| !!! | AAATCAGATTGATGATGATA+AGG | - | chr6.3:3273667-3273686 | MS.gene026934:intron | 25.0% |
| !!! | AATCAGATTGATGATGATAA+GGG | - | chr6.3:3273668-3273687 | MS.gene026934:intron | 25.0% |
| !!! | GTGTTAACTATTGATTTGTT+TGG | - | chr6.3:3272625-3272644 | MS.gene026934:CDS | 25.0% |
| ACAAGTCACAGCAATAATAT+AGG | + | chr6.3:3273486-3273505 | None:intergenic | 30.0% | |
| ACCAACAATTAAAGACCTTT+GGG | + | chr6.3:3273165-3273184 | None:intergenic | 30.0% | |
| ACTATTCAGCTCATACTATA+TGG | - | chr6.3:3273623-3273642 | MS.gene026934:intron | 30.0% | |
| ATCGTTGATCTAAATATAGC+TGG | + | chr6.3:3272287-3272306 | None:intergenic | 30.0% | |
| CTACAAGATTATCAAGAAGA+AGG | - | chr6.3:3272703-3272722 | MS.gene026934:CDS | 30.0% | |
| TACCAACAATTAAAGACCTT+TGG | + | chr6.3:3273166-3273185 | None:intergenic | 30.0% | |
| TCAACTAGGTAAGAGATATA+GGG | - | chr6.3:3272532-3272551 | MS.gene026934:CDS | 30.0% | |
| TCATACTATATGGCTATTAC+TGG | - | chr6.3:3273633-3273652 | MS.gene026934:intron | 30.0% | |
| TTCAACAATGTTGCTAAGTA+TGG | + | chr6.3:3272752-3272771 | None:intergenic | 30.0% | |
| TTCAACTAGGTAAGAGATAT+AGG | - | chr6.3:3272531-3272550 | MS.gene026934:CDS | 30.0% | |
| TTGACATAACCATGGTTTAT+CGG | - | chr6.3:3272311-3272330 | MS.gene026934:CDS | 30.0% | |
| ! | ACTTGTTACATATGATGAAC+AGG | - | chr6.3:3273317-3273336 | MS.gene026934:intron | 30.0% |
| ! | CATTGTTGAATTGTGCATTT+TGG | - | chr6.3:3272762-3272781 | MS.gene026934:intron | 30.0% |
| ! | TTGTTTTCAACTTTTGGCAT+TGG | - | chr6.3:3272591-3272610 | MS.gene026934:CDS | 30.0% |
| !! | CACACTCTTGGTTTTTATAA+CGG | + | chr6.3:3273346-3273365 | None:intergenic | 30.0% |
| !!! | TGCACTATTAGTTTTCAACT+AGG | - | chr6.3:3272518-3272537 | MS.gene026934:CDS | 30.0% |
| AATGTTGCTAAGTATGGATC+TGG | + | chr6.3:3272746-3272765 | None:intergenic | 35.0% | |
| ACCAGAACATAAAGGTCAAA+GGG | + | chr6.3:3273444-3273463 | None:intergenic | 35.0% | |
| ACCCAAAGGTCTTTAATTGT+TGG | - | chr6.3:3273161-3273180 | MS.gene026934:intron | 35.0% | |
| AGAATTCCAAGAAGAAAGGA+AGG | - | chr6.3:3272897-3272916 | MS.gene026934:intron | 35.0% | |
| ATGTTGCTAAGTATGGATCT+GGG | + | chr6.3:3272745-3272764 | None:intergenic | 35.0% | |
| CAACTCTGTTATCAGAACAA+TGG | + | chr6.3:3273126-3273145 | None:intergenic | 35.0% | |
| CAATTAAAGACCTTTGGGTA+TGG | + | chr6.3:3273160-3273179 | None:intergenic | 35.0% | |
| CATTGTTCTGATAACAGAGT+TGG | - | chr6.3:3273124-3273143 | MS.gene026934:intron | 35.0% | |
| GAATTCCAAGAAGAAAGGAA+GGG | - | chr6.3:3272898-3272917 | MS.gene026934:intron | 35.0% | |
| GAGAGTTTAATTAGTTACGC+TGG | + | chr6.3:3271992-3272011 | None:intergenic | 35.0% | |
| GATTATCAAGAAGAAGGATG+TGG | - | chr6.3:3272709-3272728 | MS.gene026934:CDS | 35.0% | |
| TACCAGAACATAAAGGTCAA+AGG | + | chr6.3:3273445-3273464 | None:intergenic | 35.0% | |
| TCCAAGAATTCCAAGAAGAA+AGG | - | chr6.3:3272893-3272912 | MS.gene026934:intron | 35.0% | |
| TCCTTTCTTCTTGGAATTCT+TGG | + | chr6.3:3272897-3272916 | None:intergenic | 35.0% | |
| TGAATATTGCAGATCAGCAA+TGG | - | chr6.3:3273581-3273600 | MS.gene026934:intron | 35.0% | |
| TTACTTACCATGATCGTAAG+AGG | + | chr6.3:3273227-3273246 | None:intergenic | 35.0% | |
| TTGTTTGGCACTTCAACTTA+AGG | - | chr6.3:3272640-3272659 | MS.gene026934:CDS | 35.0% | |
| ! | AATGGTATTGGAGTAATCTC+TGG | - | chr6.3:3273599-3273618 | MS.gene026934:intron | 35.0% |
| !! | TGTGCATTTTGGGTATTCTA+TGG | - | chr6.3:3272773-3272792 | MS.gene026934:intron | 35.0% |
| AAAAGACGACCGATAAACCA+TGG | + | chr6.3:3272323-3272342 | None:intergenic | 40.0% | |
| AACAAGTCCAACACCATTGA+TGG | + | chr6.3:3272837-3272856 | None:intergenic | 40.0% | |
| ATAACAGAGTTGGCACTACA+TGG | - | chr6.3:3273134-3273153 | MS.gene026934:intron | 40.0% | |
| ATATGGCTATTACTGGTGCA+GGG | - | chr6.3:3273640-3273659 | MS.gene026934:intron | 40.0% | |
| CCAGAACATAAAGGTCAAAG+GGG | + | chr6.3:3273443-3273462 | None:intergenic | 40.0% | |
| CGATGAGTTTGACATAACCA+TGG | - | chr6.3:3272303-3272322 | MS.gene026934:CDS | 40.0% | |
| CGTAACGTTGTTGGTATCAT+AGG | - | chr6.3:3271723-3271742 | MS.gene026934:CDS | 40.0% | |
| GGGGATTATTCTTCTCATTG+AGG | - | chr6.3:3273085-3273104 | MS.gene026934:intron | 40.0% | |
| GTGTGAAATACATGCCATTC+TGG | - | chr6.3:3273361-3273380 | MS.gene026934:intron | 40.0% | |
| TATATGGCTATTACTGGTGC+AGG | - | chr6.3:3273639-3273658 | MS.gene026934:intron | 40.0% | |
| TCAGTGATTCGTAACGTTGT+TGG | - | chr6.3:3271714-3271733 | MS.gene026934:CDS | 40.0% | |
| TGGCATGTATTTCACACTCT+TGG | + | chr6.3:3273358-3273377 | None:intergenic | 40.0% | |
| TTGCAGATCAGCAATGGTAT+TGG | - | chr6.3:3273587-3273606 | MS.gene026934:intron | 40.0% | |
| !! | CAGATTGATGATGATAAGGG+TGG | - | chr6.3:3273671-3273690 | MS.gene026934:intron | 40.0% |
| CAACGTTACGAATCACTGAC+TGG | + | chr6.3:3271713-3271732 | None:intergenic | 45.0% | |
| CCCCTTTGACCTTTATGTTC+TGG | - | chr6.3:3273440-3273459 | MS.gene026934:CDS | 45.0% | |
| GAACATAAAGGTCAAAGGGG+TGG | + | chr6.3:3273440-3273459 | None:intergenic | 45.0% | |
| TATGGCTATTACTGGTGCAG+GGG | - | chr6.3:3273641-3273660 | MS.gene026934:intron | 45.0% | |
| TCTCTGGCTAACTTCTGCAA+TGG | - | chr6.3:3273387-3273406 | MS.gene026934:intron | 45.0% | |
| TGACGACCAAAAGGCTGTTT+GGG | + | chr6.3:3272814-3272833 | None:intergenic | 45.0% | |
| TGCTTCTCCTCTTACGATCA+TGG | - | chr6.3:3273217-3273236 | MS.gene026934:intron | 45.0% | |
| ! | ACTTCTGCAATGGACTTTGC+TGG | - | chr6.3:3273397-3273416 | MS.gene026934:intron | 45.0% |
| ! | CTTTTGGTCGTCACCATCAA+TGG | - | chr6.3:3272821-3272840 | MS.gene026934:intron | 45.0% |
| !! | CATTGATGGTGACGACCAAA+AGG | + | chr6.3:3272823-3272842 | None:intergenic | 45.0% |
| !! | AAAATGTATATTAATTAATA+TGG | + | chr6.3:3273558-3273577 | None:intergenic | 5.0% |
| !! | AAATGTATATTAATTAATAT+GGG | + | chr6.3:3273557-3273576 | None:intergenic | 5.0% |
| ACGCACCCTTCCTTTCTTCT+TGG | + | chr6.3:3272906-3272925 | None:intergenic | 50.0% | |
| AGGCTGTTTGGGTGCACAAA+AGG | + | chr6.3:3272803-3272822 | None:intergenic | 50.0% | |
| CACTACATGGCCATACCCAA+AGG | - | chr6.3:3273147-3273166 | MS.gene026934:intron | 50.0% | |
| GATGATGATAAGGGTGGTCC+AGG | - | chr6.3:3273677-3273696 | MS.gene026934:intron | 50.0% | |
| GTCGTCACCATCAATGGTGT+TGG | - | chr6.3:3272827-3272846 | MS.gene026934:intron | 50.0% | |
| GTGACGACCAAAAGGCTGTT+TGG | + | chr6.3:3272815-3272834 | None:intergenic | 50.0% | |
| TTAGCCAGAGAGAGCCAGAA+TGG | + | chr6.3:3273378-3273397 | None:intergenic | 50.0% | |
| ! | TGTGCACCCAAACAGCCTTT+TGG | - | chr6.3:3272805-3272824 | MS.gene026934:intron | 50.0% |
| !! | CATGCCATTCTGGCTCTCTC+TGG | - | chr6.3:3273371-3273390 | MS.gene026934:intron | 55.0% |
| ACTGCAGTCGCAACTGGAGC+TGG | + | chr6.3:3273704-3273723 | None:intergenic | 60.0% | |
| GGCTATTACTGGTGCAGGGG+AGG | - | chr6.3:3273644-3273663 | MS.gene026934:intron | 60.0% | |
| GTCGCAACTGGAGCTGGACC+TGG | + | chr6.3:3273698-3273717 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 3271702 | 3273727 | 3271702 | ID=MS.gene026934 |
| chr6.3 | mRNA | 3271702 | 3273727 | 3271702 | ID=MS.gene026934.t1;Parent=MS.gene026934 |
| chr6.3 | exon | 3273685 | 3273727 | 3273685 | ID=MS.gene026934.t1.exon1;Parent=MS.gene026934.t1 |
| chr6.3 | CDS | 3273685 | 3273727 | 3273685 | ID=cds.MS.gene026934.t1;Parent=MS.gene026934.t1 |
| chr6.3 | exon | 3273436 | 3273472 | 3273436 | ID=MS.gene026934.t1.exon2;Parent=MS.gene026934.t1 |
| chr6.3 | CDS | 3273436 | 3273472 | 3273436 | ID=cds.MS.gene026934.t1;Parent=MS.gene026934.t1 |
| chr6.3 | exon | 3272510 | 3272735 | 3272510 | ID=MS.gene026934.t1.exon3;Parent=MS.gene026934.t1 |
| chr6.3 | CDS | 3272510 | 3272735 | 3272510 | ID=cds.MS.gene026934.t1;Parent=MS.gene026934.t1 |
| chr6.3 | exon | 3272191 | 3272352 | 3272191 | ID=MS.gene026934.t1.exon4;Parent=MS.gene026934.t1 |
| chr6.3 | CDS | 3272191 | 3272352 | 3272191 | ID=cds.MS.gene026934.t1;Parent=MS.gene026934.t1 |
| chr6.3 | exon | 3271968 | 3272090 | 3271968 | ID=MS.gene026934.t1.exon5;Parent=MS.gene026934.t1 |
| chr6.3 | CDS | 3271968 | 3272090 | 3271968 | ID=cds.MS.gene026934.t1;Parent=MS.gene026934.t1 |
| chr6.3 | exon | 3271702 | 3271836 | 3271702 | ID=MS.gene026934.t1.exon6;Parent=MS.gene026934.t1 |
| chr6.3 | CDS | 3271702 | 3271836 | 3271702 | ID=cds.MS.gene026934.t1;Parent=MS.gene026934.t1 |
| Gene Sequence |
| Protein sequence |
