Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026935.t1 | XP_013450821.1 | 74.3 | 206 | 50 | 1 | 1 | 203 | 11 | 216 | 5.60E-73 | 284.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026935.t1 | A2YZ24 | 50.2 | 219 | 105 | 2 | 1 | 216 | 10 | 227 | 2.2e-49 | 197.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026935.t1 | A0A072U6A4 | 74.3 | 206 | 50 | 1 | 1 | 203 | 11 | 216 | 4.0e-73 | 284.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026935 | MS.gene31850 | PPI |
| MS.gene69746 | MS.gene026935 | PPI |
| MS.gene026935 | MS.gene009329 | PPI |
| MS.gene013686 | MS.gene026935 | PPI |
| MS.gene026935 | MS.gene044269 | PPI |
| MS.gene90281 | MS.gene026935 | PPI |
| MS.gene026935 | MS.gene70529 | PPI |
| MS.gene026935 | MS.gene81949 | PPI |
| MS.gene026935 | MS.gene46188 | PPI |
| MS.gene026935 | MS.gene009331 | PPI |
| MS.gene026935 | MS.gene048962 | PPI |
| MS.gene026935 | MS.gene25769 | PPI |
| MS.gene026935 | MS.gene52346 | PPI |
| MS.gene026935 | MS.gene02493 | PPI |
| MS.gene55828 | MS.gene026935 | PPI |
| MS.gene026935 | MS.gene026679 | PPI |
| MS.gene026935 | MS.gene93151 | PPI |
| MS.gene026935 | MS.gene02646 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026935.t1 | MTR_6g007633 | 68.067 | 238 | 60 | 2 | 1 | 235 | 10 | 234 | 9.64e-106 | 306 |
| MS.gene026935.t1 | MTR_6g007637 | 73.206 | 209 | 53 | 1 | 1 | 206 | 11 | 219 | 2.10e-101 | 295 |
| MS.gene026935.t1 | MTR_6g007623 | 61.826 | 241 | 75 | 2 | 1 | 238 | 7 | 233 | 2.27e-97 | 284 |
| MS.gene026935.t1 | MTR_6g007610 | 54.464 | 224 | 84 | 4 | 1 | 210 | 10 | 229 | 8.64e-71 | 217 |
| MS.gene026935.t1 | MTR_8g099730 | 46.698 | 212 | 109 | 2 | 1 | 209 | 20 | 230 | 5.50e-59 | 187 |
| MS.gene026935.t1 | MTR_3g080990 | 45.498 | 211 | 111 | 2 | 2 | 209 | 11 | 220 | 4.72e-53 | 172 |
| MS.gene026935.t1 | MTR_4g106990 | 48.958 | 192 | 94 | 2 | 19 | 207 | 35 | 225 | 1.54e-50 | 165 |
| MS.gene026935.t1 | MTR_8g099730 | 47.273 | 165 | 86 | 1 | 45 | 209 | 3 | 166 | 3.53e-47 | 155 |
| MS.gene026935.t1 | MTR_8g042490 | 32.870 | 216 | 140 | 3 | 2 | 214 | 17 | 230 | 5.19e-35 | 125 |
| MS.gene026935.t1 | MTR_2g073190 | 36.279 | 215 | 132 | 3 | 2 | 213 | 17 | 229 | 1.14e-33 | 128 |
| MS.gene026935.t1 | MTR_1g029380 | 36.697 | 218 | 129 | 5 | 3 | 215 | 9 | 222 | 8.14e-30 | 112 |
| MS.gene026935.t1 | MTR_2g436310 | 35.391 | 243 | 141 | 7 | 2 | 232 | 8 | 246 | 3.86e-29 | 110 |
| MS.gene026935.t1 | MTR_8g096320 | 36.893 | 206 | 119 | 6 | 3 | 202 | 13 | 213 | 1.65e-28 | 108 |
| MS.gene026935.t1 | MTR_1g028460 | 35.577 | 208 | 126 | 4 | 2 | 203 | 9 | 214 | 1.81e-28 | 108 |
| MS.gene026935.t1 | MTR_3g089125 | 35.678 | 199 | 123 | 3 | 7 | 202 | 13 | 209 | 3.60e-28 | 107 |
| MS.gene026935.t1 | MTR_7g007490 | 31.646 | 237 | 153 | 4 | 7 | 240 | 18 | 248 | 6.93e-26 | 102 |
| MS.gene026935.t1 | MTR_3g098910 | 34.500 | 200 | 124 | 4 | 7 | 202 | 17 | 213 | 8.21e-26 | 103 |
| MS.gene026935.t1 | MTR_5g092600 | 32.743 | 226 | 142 | 6 | 14 | 235 | 24 | 243 | 1.43e-25 | 101 |
| MS.gene026935.t1 | MTR_2g007890 | 32.701 | 211 | 129 | 7 | 7 | 210 | 20 | 224 | 2.23e-25 | 101 |
| MS.gene026935.t1 | MTR_8g096310 | 28.175 | 252 | 156 | 8 | 1 | 240 | 11 | 249 | 1.65e-24 | 99.0 |
| MS.gene026935.t1 | MTR_5g067530 | 34.328 | 201 | 122 | 5 | 7 | 202 | 18 | 213 | 4.41e-24 | 97.8 |
| MS.gene026935.t1 | MTR_3g090950 | 32.850 | 207 | 131 | 4 | 2 | 202 | 9 | 213 | 3.60e-22 | 92.0 |
| MS.gene026935.t1 | MTR_3g090940 | 31.884 | 207 | 133 | 4 | 2 | 202 | 9 | 213 | 9.52e-22 | 90.9 |
| MS.gene026935.t1 | MTR_3g098930 | 37.640 | 178 | 100 | 6 | 3 | 174 | 14 | 186 | 1.67e-20 | 86.7 |
| MS.gene026935.t1 | MTR_8g096320 | 36.646 | 161 | 94 | 5 | 45 | 202 | 3 | 158 | 2.81e-19 | 83.2 |
| MS.gene026935.t1 | MTR_7g405710 | 33.654 | 208 | 128 | 6 | 7 | 209 | 17 | 219 | 2.38e-18 | 82.4 |
| MS.gene026935.t1 | MTR_7g405730 | 31.683 | 202 | 126 | 6 | 7 | 202 | 17 | 212 | 3.01e-16 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026935.t1 | AT4G10850 | 47.887 | 213 | 104 | 4 | 1 | 208 | 12 | 222 | 6.85e-60 | 190 |
| MS.gene026935.t1 | AT5G62850 | 46.602 | 206 | 106 | 2 | 1 | 203 | 10 | 214 | 4.94e-59 | 187 |
| MS.gene026935.t1 | AT5G62850 | 43.318 | 217 | 105 | 4 | 1 | 213 | 10 | 212 | 9.41e-53 | 170 |
| MS.gene026935.t1 | AT3G28007 | 49.515 | 206 | 100 | 2 | 1 | 203 | 10 | 214 | 3.04e-51 | 167 |
| MS.gene026935.t1 | AT1G66770 | 43.662 | 213 | 113 | 4 | 1 | 208 | 12 | 222 | 7.88e-51 | 167 |
| MS.gene026935.t1 | AT5G40260 | 40.991 | 222 | 125 | 3 | 1 | 216 | 10 | 231 | 3.12e-46 | 154 |
| MS.gene026935.t1 | AT5G40260 | 41.146 | 192 | 108 | 2 | 1 | 187 | 10 | 201 | 2.25e-40 | 138 |
| MS.gene026935.t1 | AT4G15920 | 34.052 | 232 | 140 | 5 | 2 | 229 | 8 | 230 | 2.93e-36 | 129 |
| MS.gene026935.t1 | AT1G21460 | 35.841 | 226 | 139 | 4 | 7 | 229 | 13 | 235 | 3.20e-35 | 126 |
| MS.gene026935.t1 | AT3G14770 | 33.824 | 204 | 130 | 3 | 2 | 202 | 17 | 218 | 1.10e-32 | 119 |
| MS.gene026935.t1 | AT3G16690 | 35.714 | 210 | 126 | 5 | 2 | 206 | 8 | 213 | 1.04e-30 | 114 |
| MS.gene026935.t1 | AT3G16690 | 35.714 | 210 | 126 | 5 | 2 | 206 | 43 | 248 | 2.11e-30 | 114 |
| MS.gene026935.t1 | AT1G21460 | 37.838 | 185 | 110 | 3 | 3 | 184 | 9 | 191 | 4.10e-27 | 103 |
| MS.gene026935.t1 | AT2G39060 | 32.068 | 237 | 150 | 4 | 7 | 240 | 17 | 245 | 4.38e-27 | 105 |
| MS.gene026935.t1 | AT5G13170 | 32.287 | 223 | 136 | 7 | 7 | 223 | 19 | 232 | 4.43e-27 | 106 |
| MS.gene026935.t1 | AT5G23660 | 36.321 | 212 | 119 | 7 | 7 | 213 | 19 | 219 | 5.77e-27 | 105 |
| MS.gene026935.t1 | AT4G25010 | 34.804 | 204 | 126 | 5 | 3 | 202 | 13 | 213 | 2.54e-25 | 101 |
| MS.gene026935.t1 | AT5G50800 | 35.025 | 197 | 121 | 5 | 7 | 199 | 17 | 210 | 4.27e-25 | 100 |
| MS.gene026935.t1 | AT3G48740 | 33.488 | 215 | 133 | 6 | 7 | 216 | 19 | 228 | 4.44e-24 | 98.2 |
| MS.gene026935.t1 | AT5G53190 | 33.333 | 207 | 130 | 4 | 2 | 202 | 9 | 213 | 3.39e-23 | 95.1 |
| MS.gene026935.t1 | AT5G50790 | 31.455 | 213 | 134 | 6 | 7 | 215 | 17 | 221 | 4.23e-22 | 92.8 |
| MS.gene026935.t1 | AT3G16690 | 32.624 | 141 | 89 | 3 | 2 | 138 | 8 | 146 | 4.16e-12 | 63.9 |
Find 43 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAACATTGCAAATCTT+TGG | 0.261599 | 6.3:-3254413 | MS.gene026935:CDS |
| GTGTGAAATACATGCCATTT+TGG | 0.263887 | 6.3:-3254703 | MS.gene026935:CDS |
| AATGGTATTGGAGCAATCTT+TGG | 0.337675 | 6.3:-3254481 | MS.gene026935:CDS |
| TCATACTATATGCTTATTAC+TGG | 0.339121 | 6.3:-3254447 | MS.gene026935:CDS |
| ACCAACAATTAAAGACCTTT+TGG | 0.340820 | 6.3:+3254904 | None:intergenic |
| ACTTCCTCAATCGACTTTGC+TGG | 0.377459 | 6.3:-3254667 | MS.gene026935:CDS |
| TATGCCAGAAAGAACCAAAA+TGG | 0.388373 | 6.3:+3254689 | None:intergenic |
| ACTACATTCACAACCGGAAC+TGG | 0.393487 | 6.3:+3254343 | None:intergenic |
| GAGAGAACTAGAGTGCTGTT+TGG | 0.402304 | 6.3:+3255766 | None:intergenic |
| ACCAAAAGGTCTTTAATTGT+TGG | 0.403531 | 6.3:-3254905 | MS.gene026935:CDS |
| AGAGAACTAGAGTGCTGTTT+GGG | 0.404951 | 6.3:+3255767 | None:intergenic |
| TTAATAATTCCATAGGAAGT+TGG | 0.407029 | 6.3:+3255874 | None:intergenic |
| GAATGTAGTCGATCTGATTA+TGG | 0.410860 | 6.3:-3254329 | MS.gene026935:CDS |
| TGATAACGATGTTCCAGTTC+CGG | 0.412800 | 6.3:-3254356 | MS.gene026935:CDS |
| GTGCTGTTTGGGTGCACAAA+AGG | 0.430396 | 6.3:+3255778 | None:intergenic |
| TTGCAGATCAGCAATGGTAT+TGG | 0.445462 | 6.3:-3254493 | MS.gene026935:intron |
| CTATGGAATTATTAAGAAGA+AGG | 0.449513 | 6.3:-3255866 | MS.gene026935:CDS |
| TGGCATGTATTTCACACTCT+TGG | 0.458040 | 6.3:+3254709 | None:intergenic |
| TAGTGTTGGAATTCTCTTTG+AGG | 0.470382 | 6.3:-3255737 | MS.gene026935:CDS |
| ACCAGGACATAGATGTCAAA+GGG | 0.471199 | 6.3:+3254623 | None:intergenic |
| TATTGCAGACCAACTTCCTA+TGG | 0.483106 | 6.3:-3255883 | MS.gene026935:intron |
| CTTCTTCTTAATAATTCCAT+AGG | 0.488380 | 6.3:+3255867 | None:intergenic |
| CAATTCAACAAGTGTGGACC+TGG | 0.501834 | 6.3:+3255826 | None:intergenic |
| AGATCGACTACATTCACAAC+CGG | 0.509429 | 6.3:+3254337 | None:intergenic |
| CCCCTTTGACATCTATGTCC+TGG | 0.515797 | 6.3:-3254624 | MS.gene026935:intron |
| GCTGATTGATCTTCTCATTG+AGG | 0.535760 | 6.3:-3254981 | MS.gene026935:CDS |
| GCAGGGAATGTGATCTCCCT+CGG | 0.545530 | 6.3:-3256518 | MS.gene026935:intron |
| TGTCTCTCATCTTATCATCA+TGG | 0.549887 | 6.3:-3254849 | MS.gene026935:intron |
| GTTCTCTCTATCAATAGTGT+TGG | 0.555736 | 6.3:-3255751 | MS.gene026935:CDS |
| ATATGCTTATTACTGGTGCA+TGG | 0.570723 | 6.3:-3254440 | MS.gene026935:CDS |
| TACCAGGACATAGATGTCAA+AGG | 0.572327 | 6.3:+3254622 | None:intergenic |
| TACTACCTGACACTACCAAA+AGG | 0.574411 | 6.3:-3254919 | MS.gene026935:CDS |
| AATTATTAAGAAGAAGGCTG+TGG | 0.576708 | 6.3:-3255860 | MS.gene026935:CDS |
| TAGTCCAGCAAAGTCGATTG+AGG | 0.581653 | 6.3:+3254663 | None:intergenic |
| TGAATATTGCAGATCAGCAA+TGG | 0.603008 | 6.3:-3254499 | MS.gene026935:intron |
| AGTTTGATTACGCTGGTGAG+AGG | 0.609407 | 6.3:+3256489 | None:intergenic |
| CTGGTGAGAGGAACAATCCG+AGG | 0.630041 | 6.3:+3256501 | None:intergenic |
| GGACATAGATGTCAAAGGGG+TGG | 0.637928 | 6.3:+3254627 | None:intergenic |
| AAAGCACAATTCAACAAGTG+TGG | 0.638191 | 6.3:+3255820 | None:intergenic |
| CAACATTGTTATCAGAACAA+TGG | 0.640897 | 6.3:+3254943 | None:intergenic |
| TGGTGAGAGGAACAATCCGA+GGG | 0.673498 | 6.3:+3256502 | None:intergenic |
| GCTGTGGAATATGTCAAACC+AGG | 0.673916 | 6.3:-3255844 | MS.gene026935:CDS |
| CCAGGACATAGATGTCAAAG+GGG | 0.714700 | 6.3:+3254624 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTATATTAATTAACAT+GGG | + | chr6.3:3256648-3256667 | None:intergenic | 10.0% |
| !! | ATATTATTATGTATCTAATT+AGG | + | chr6.3:3255062-3255081 | None:intergenic | 10.0% |
| !! | CAAATGTATATTAATTAACA+TGG | + | chr6.3:3256649-3256668 | None:intergenic | 15.0% |
| !! | TATATTATTGTAGTTCAATT+GGG | - | chr6.3:3256598-3256617 | MS.gene026935:intron | 15.0% |
| !! | CAATTGAACTACAATAATAT+AGG | + | chr6.3:3256599-3256618 | None:intergenic | 20.0% |
| !! | CTATATTATTGTAGTTCAAT+TGG | - | chr6.3:3256597-3256616 | MS.gene026935:intron | 20.0% |
| !! | TAATAACTCAATGAATAGTT+TGG | + | chr6.3:3255996-3256015 | None:intergenic | 20.0% |
| !! | TACATATTAGATAAATTACC+AGG | + | chr6.3:3256574-3256593 | None:intergenic | 20.0% |
| !! | TTTCCAAATAAATCAAATCA+AGG | + | chr6.3:3255245-3255264 | None:intergenic | 20.0% |
| !!! | AAATTTTCATGAATTCATGA+AGG | + | chr6.3:3255884-3255903 | None:intergenic | 20.0% |
| !!! | GCACATTTTTTTTACAAATT+AGG | - | chr6.3:3256870-3256889 | MS.gene026935:intron | 20.0% |
| !!! | TTTTGTTACATATAATGAAC+AGG | - | chr6.3:3256430-3256449 | MS.gene026935:intron | 20.0% |
| ! | AAATCAACATTGCAAATCTT+TGG | - | chr6.3:3256764-3256783 | MS.gene026935:intron | 25.0% |
| ! | CTATGGAATTATTAAGAAGA+AGG | - | chr6.3:3255311-3255330 | MS.gene026935:intron | 25.0% |
| ! | CTTCTTCTTAATAATTCCAT+AGG | + | chr6.3:3255313-3255332 | None:intergenic | 25.0% |
| ! | GTGATCTGAATATAAACTAA+TGG | + | chr6.3:3256369-3256388 | None:intergenic | 25.0% |
| ! | TCATACTATATGCTTATTAC+TGG | - | chr6.3:3256730-3256749 | MS.gene026935:intron | 25.0% |
| ! | TTAATAATTCCATAGGAAGT+TGG | + | chr6.3:3255306-3255325 | None:intergenic | 25.0% |
| ! | TTGGAAATTGAATGAATGAA+TGG | - | chr6.3:3255258-3255277 | MS.gene026935:intron | 25.0% |
| ! | TTTATCTATGCCAACAAAAA+TGG | - | chr6.3:3255483-3255502 | MS.gene026935:intron | 25.0% |
| ! | TTTCAAATTAACCAAACGTT+AGG | + | chr6.3:3256057-3256076 | None:intergenic | 25.0% |
| !! | AAACACTCTAAACAGTTTTT+AGG | - | chr6.3:3255019-3255038 | MS.gene026935:intron | 25.0% |
| !! | ACACCTTGATTTGATTTATT+TGG | - | chr6.3:3255239-3255258 | MS.gene026935:intron | 25.0% |
| !! | TACGGTTTAACTTATTCTAA+TGG | - | chr6.3:3254618-3254637 | MS.gene026935:intron | 25.0% |
| !!! | GTAACACAGCAAATTTTAAT+TGG | + | chr6.3:3255714-3255733 | None:intergenic | 25.0% |
| !!! | TTTTTTGATTACCTAACGTT+TGG | - | chr6.3:3256043-3256062 | MS.gene026935:intron | 25.0% |
| AAGTAAGTTAGAGTAACTAG+AGG | + | chr6.3:3255831-3255850 | None:intergenic | 30.0% | |
| AATCATTGATGTAACTAGAG+GGG | + | chr6.3:3255531-3255550 | None:intergenic | 30.0% | |
| AATTATTAAGAAGAAGGCTG+TGG | - | chr6.3:3255317-3255336 | MS.gene026935:intron | 30.0% | |
| ACCAAAAGGTCTTTAATTGT+TGG | - | chr6.3:3256272-3256291 | MS.gene026935:intron | 30.0% | |
| ACTATAGTCTATATCCTACT+CGG | + | chr6.3:3254928-3254947 | None:intergenic | 30.0% | |
| ACTCAATGAATAGTTTGGTA+TGG | + | chr6.3:3255991-3256010 | None:intergenic | 30.0% | |
| AGAATAGTTAGTAGCATAAC+AGG | + | chr6.3:3256148-3256167 | None:intergenic | 30.0% | |
| ATATCACTTTCAGTGATAAC+AGG | - | chr6.3:3256020-3256039 | MS.gene026935:intron | 30.0% | |
| CAACATTGTTATCAGAACAA+TGG | + | chr6.3:3256237-3256256 | None:intergenic | 30.0% | |
| CAATCATTGATGTAACTAGA+GGG | + | chr6.3:3255532-3255551 | None:intergenic | 30.0% | |
| GAAGTTTCTTAGTTCAGTTA+CGG | - | chr6.3:3254600-3254619 | MS.gene026935:intron | 30.0% | |
| TAACTGAACTAAGAAACTTC+TGG | + | chr6.3:3254600-3254619 | None:intergenic | 30.0% | |
| TAGTTTGGTATGGACATAAA+AGG | + | chr6.3:3255981-3256000 | None:intergenic | 30.0% | |
| TCAATCATTGATGTAACTAG+AGG | + | chr6.3:3255533-3255552 | None:intergenic | 30.0% | |
| ! | ACCAACAATTAAAGACCTTT+TGG | + | chr6.3:3256276-3256295 | None:intergenic | 30.0% |
| !! | ACTTGTTGAATTGTGCTTTT+TGG | - | chr6.3:3255361-3255380 | MS.gene026935:intron | 30.0% |
| !! | CTTGTTGAATTGTGCTTTTT+GGG | - | chr6.3:3255362-3255381 | MS.gene026935:intron | 30.0% |
| AAAATTTCATCGTGTTCGTG+TGG | + | chr6.3:3254810-3254829 | None:intergenic | 35.0% | |
| AAACCAAGTTGCTAATCGAA+TGG | - | chr6.3:3256086-3256105 | MS.gene026935:intron | 35.0% | |
| AAAGCACAATTCAACAAGTG+TGG | + | chr6.3:3255360-3255379 | None:intergenic | 35.0% | |
| AAGAGAAAGTTTGATTACGC+TGG | + | chr6.3:3254698-3254717 | None:intergenic | 35.0% | |
| AGATATAGCATTGCTCATGA+AGG | + | chr6.3:3255576-3255595 | None:intergenic | 35.0% | |
| AGTTAGTAGCATAACAGGAA+TGG | + | chr6.3:3256143-3256162 | None:intergenic | 35.0% | |
| AGTTGCTAATCGAATGGTTA+AGG | - | chr6.3:3256092-3256111 | MS.gene026935:intron | 35.0% | |
| ATATGCTTATTACTGGTGCA+TGG | - | chr6.3:3256737-3256756 | MS.gene026935:intron | 35.0% | |
| GAATGTAGTCGATCTGATTA+TGG | - | chr6.3:3256848-3256867 | MS.gene026935:intron | 35.0% | |
| GTTCTCTCTATCAATAGTGT+TGG | - | chr6.3:3255426-3255445 | MS.gene026935:intron | 35.0% | |
| TAACCATTCGATTAGCAACT+TGG | + | chr6.3:3256092-3256111 | None:intergenic | 35.0% | |
| TAGCATAACAGGAATGGTAA+TGG | + | chr6.3:3256137-3256156 | None:intergenic | 35.0% | |
| TATGCCAGAAAGAACCAAAA+TGG | + | chr6.3:3256491-3256510 | None:intergenic | 35.0% | |
| TCTATGCCAACAAAAATGGA+CGG | - | chr6.3:3255487-3255506 | MS.gene026935:intron | 35.0% | |
| TGAATATTGCAGATCAGCAA+TGG | - | chr6.3:3256678-3256697 | MS.gene026935:intron | 35.0% | |
| TGTCTCTCATCTTATCATCA+TGG | - | chr6.3:3256328-3256347 | MS.gene026935:intron | 35.0% | |
| ! | AATGGTATTGGAGCAATCTT+TGG | - | chr6.3:3256696-3256715 | MS.gene026935:intron | 35.0% |
| ! | TAGTGTTGGAATTCTCTTTG+AGG | - | chr6.3:3255440-3255459 | MS.gene026935:intron | 35.0% |
| !! | ATTAGCAACTTGGTTTTCGT+AGG | + | chr6.3:3256082-3256101 | None:intergenic | 35.0% |
| !! | CTAATGGATGTTCTGTGTTT+TGG | - | chr6.3:3254634-3254653 | MS.gene026935:CDS | 35.0% |
| !! | GTGTGAAATACATGCCATTT+TGG | - | chr6.3:3256474-3256493 | MS.gene026935:intron | 35.0% |
| !! | TTAGCAACTTGGTTTTCGTA+GGG | + | chr6.3:3256081-3256100 | None:intergenic | 35.0% |
| !!! | TGTGCTTTTTGGGTGTTTTA+TGG | - | chr6.3:3255372-3255391 | MS.gene026935:intron | 35.0% |
| ACCAGGACATAGATGTCAAA+GGG | + | chr6.3:3256557-3256576 | None:intergenic | 40.0% | |
| AGATCGACTACATTCACAAC+CGG | + | chr6.3:3256843-3256862 | None:intergenic | 40.0% | |
| CGTAACGCTGTTGGAATTAT+AGG | - | chr6.3:3254329-3254348 | MS.gene026935:CDS | 40.0% | |
| CTATGCCAACAAAAATGGAC+GGG | - | chr6.3:3255488-3255507 | MS.gene026935:intron | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr6.3:3255652-3255671 | MS.gene026935:intron | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr6.3:3255649-3255668 | MS.gene026935:intron | 40.0% | |
| GCTGATTGATCTTCTCATTG+AGG | - | chr6.3:3256196-3256215 | MS.gene026935:intron | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | chr6.3:3255641-3255660 | None:intergenic | 40.0% | |
| TACCAGGACATAGATGTCAA+AGG | + | chr6.3:3256558-3256577 | None:intergenic | 40.0% | |
| TACTACCTGACACTACCAAA+AGG | - | chr6.3:3256258-3256277 | MS.gene026935:intron | 40.0% | |
| TATTGCAGACCAACTTCCTA+TGG | - | chr6.3:3255294-3255313 | MS.gene026935:intron | 40.0% | |
| TGGCATGTATTTCACACTCT+TGG | + | chr6.3:3256471-3256490 | None:intergenic | 40.0% | |
| TGTAACTAGAGGGGAACATA+AGG | + | chr6.3:3255522-3255541 | None:intergenic | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | - | chr6.3:3255675-3255694 | MS.gene026935:intron | 40.0% | |
| TTGCAGATCAGCAATGGTAT+TGG | - | chr6.3:3256684-3256703 | MS.gene026935:intron | 40.0% | |
| ! | GAGGAAAATGCTACTTCTCA+AGG | + | chr6.3:3255812-3255831 | None:intergenic | 40.0% |
| ! | TGATAACGATGTTCCAGTTC+CGG | - | chr6.3:3256821-3256840 | MS.gene026935:intron | 40.0% |
| !! | ACTTACCCGTCCATTTTTGT+TGG | + | chr6.3:3255496-3255515 | None:intergenic | 40.0% |
| !! | AGAGAACTAGAGTGCTGTTT+GGG | + | chr6.3:3255413-3255432 | None:intergenic | 40.0% |
| !! | ATGTTCTGTGTTTTGGATGC+AGG | - | chr6.3:3254641-3254660 | MS.gene026935:CDS | 40.0% |
| !! | TGTTCTGTGTTTTGGATGCA+GGG | - | chr6.3:3254642-3254661 | MS.gene026935:CDS | 40.0% |
| !! | TTTTGATTGAAGCCGTGTCT+GGG | + | chr6.3:3254893-3254912 | None:intergenic | 40.0% |
| !!! | AAAGACCTTTTGGTAGTGTC+AGG | + | chr6.3:3256266-3256285 | None:intergenic | 40.0% |
| !!! | CATGCCATTTTGGTTCTTTC+TGG | - | chr6.3:3256484-3256503 | MS.gene026935:intron | 40.0% |
| AAGTGTTTGTGCAACCGAGT+AGG | - | chr6.3:3254911-3254930 | MS.gene026935:CDS | 45.0% | |
| ACTACATTCACAACCGGAAC+TGG | + | chr6.3:3256837-3256856 | None:intergenic | 45.0% | |
| AGTTTGATTACGCTGGTGAG+AGG | + | chr6.3:3254691-3254710 | None:intergenic | 45.0% | |
| CAATTCAACAAGTGTGGACC+TGG | + | chr6.3:3255354-3255373 | None:intergenic | 45.0% | |
| CCAGGACATAGATGTCAAAG+GGG | + | chr6.3:3256556-3256575 | None:intergenic | 45.0% | |
| GCTGTGGAATATGTCAAACC+AGG | - | chr6.3:3255333-3255352 | MS.gene026935:intron | 45.0% | |
| TAGTCCAGCAAAGTCGATTG+AGG | + | chr6.3:3256517-3256536 | None:intergenic | 45.0% | |
| TCAGTAGTTCGTAACGCTGT+TGG | - | chr6.3:3254320-3254339 | MS.gene026935:CDS | 45.0% | |
| TTTGATTGAAGCCGTGTCTG+GGG | + | chr6.3:3254892-3254911 | None:intergenic | 45.0% | |
| ! | ACTTCCTCAATCGACTTTGC+TGG | - | chr6.3:3256510-3256529 | MS.gene026935:CDS | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr6.3:3255669-3255688 | MS.gene026935:intron | 45.0% |
| !! | CTTTTGATTGAAGCCGTGTC+TGG | + | chr6.3:3254894-3254913 | None:intergenic | 45.0% |
| !! | GAGAGAACTAGAGTGCTGTT+TGG | + | chr6.3:3255414-3255433 | None:intergenic | 45.0% |
| AGCCACACCTCCTTGAATTG+TGG | + | chr6.3:3255662-3255681 | None:intergenic | 50.0% | |
| CCCCTTTGACATCTATGTCC+TGG | - | chr6.3:3256553-3256572 | MS.gene026935:intron | 50.0% | |
| GGACATAGATGTCAAAGGGG+TGG | + | chr6.3:3256553-3256572 | None:intergenic | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr6.3:3255657-3255676 | MS.gene026935:intron | 50.0% | |
| TGGTGAGAGGAACAATCCGA+GGG | + | chr6.3:3254678-3254697 | None:intergenic | 50.0% | |
| !! | GTGCTGTTTGGGTGCACAAA+AGG | + | chr6.3:3255402-3255421 | None:intergenic | 50.0% |
| CTGGTGAGAGGAACAATCCG+AGG | + | chr6.3:3254679-3254698 | None:intergenic | 55.0% | |
| GCAGGGAATGTGATCTCCCT+CGG | - | chr6.3:3254659-3254678 | MS.gene026935:CDS | 55.0% | |
| TGTGTCAGACACCCCAGACA+CGG | - | chr6.3:3254878-3254897 | MS.gene026935:CDS | 55.0% | |
| ! | GTGTGAGTGTCGTGTGGTGT+CGG | + | chr6.3:3254788-3254807 | None:intergenic | 55.0% |
| ! | CGTGTGGTGTGAGTGTCGTG+TGG | + | chr6.3:3254794-3254813 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 3254303 | 3256896 | 3254303 | ID=MS.gene026935 |
| chr6.3 | mRNA | 3254303 | 3256896 | 3254303 | ID=MS.gene026935.t1;Parent=MS.gene026935 |
| chr6.3 | exon | 3256881 | 3256896 | 3256881 | ID=MS.gene026935.t1.exon1;Parent=MS.gene026935.t1 |
| chr6.3 | CDS | 3256881 | 3256896 | 3256881 | ID=cds.MS.gene026935.t1;Parent=MS.gene026935.t1 |
| chr6.3 | exon | 3256500 | 3256536 | 3256500 | ID=MS.gene026935.t1.exon2;Parent=MS.gene026935.t1 |
| chr6.3 | CDS | 3256500 | 3256536 | 3256500 | ID=cds.MS.gene026935.t1;Parent=MS.gene026935.t1 |
| chr6.3 | exon | 3255690 | 3255897 | 3255690 | ID=MS.gene026935.t1.exon3;Parent=MS.gene026935.t1 |
| chr6.3 | CDS | 3255690 | 3255897 | 3255690 | ID=cds.MS.gene026935.t1;Parent=MS.gene026935.t1 |
| chr6.3 | exon | 3254850 | 3255011 | 3254850 | ID=MS.gene026935.t1.exon4;Parent=MS.gene026935.t1 |
| chr6.3 | CDS | 3254850 | 3255011 | 3254850 | ID=cds.MS.gene026935.t1;Parent=MS.gene026935.t1 |
| chr6.3 | exon | 3254625 | 3254747 | 3254625 | ID=MS.gene026935.t1.exon5;Parent=MS.gene026935.t1 |
| chr6.3 | CDS | 3254625 | 3254747 | 3254625 | ID=cds.MS.gene026935.t1;Parent=MS.gene026935.t1 |
| chr6.3 | exon | 3254303 | 3254509 | 3254303 | ID=MS.gene026935.t1.exon6;Parent=MS.gene026935.t1 |
| chr6.3 | CDS | 3254303 | 3254509 | 3254303 | ID=cds.MS.gene026935.t1;Parent=MS.gene026935.t1 |
| Gene Sequence |
| Protein sequence |
