Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026937.t1 | XP_004489295.1 | 74.2 | 221 | 57 | 0 | 1 | 221 | 1 | 221 | 1.90E-88 | 335.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026937.t1 | Q8W0K2 | 56.7 | 215 | 92 | 1 | 1 | 215 | 1 | 214 | 3.4e-62 | 239.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026937.t1 | A0A1S2XH55 | 74.2 | 221 | 57 | 0 | 1 | 221 | 1 | 221 | 1.4e-88 | 335.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026937 | MS.gene25769 | PPI |
| MS.gene52346 | MS.gene026937 | PPI |
| MS.gene02646 | MS.gene026937 | PPI |
| MS.gene009329 | MS.gene026937 | PPI |
| MS.gene55828 | MS.gene026937 | PPI |
| MS.gene026937 | MS.gene93151 | PPI |
| MS.gene026679 | MS.gene026937 | PPI |
| MS.gene044269 | MS.gene026937 | PPI |
| MS.gene009331 | MS.gene026937 | PPI |
| MS.gene31850 | MS.gene026937 | PPI |
| MS.gene90281 | MS.gene026937 | PPI |
| MS.gene69746 | MS.gene026937 | PPI |
| MS.gene048962 | MS.gene026937 | PPI |
| MS.gene026937 | MS.gene70529 | PPI |
| MS.gene026937 | MS.gene46188 | PPI |
| MS.gene013686 | MS.gene026937 | PPI |
| MS.gene02493 | MS.gene026937 | PPI |
| MS.gene026937 | MS.gene81949 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026937.t1 | MTR_6g007633 | 77.376 | 221 | 50 | 0 | 1 | 221 | 1 | 221 | 5.42e-125 | 353 |
| MS.gene026937.t1 | MTR_6g007637 | 75.229 | 218 | 54 | 0 | 1 | 218 | 2 | 219 | 5.42e-118 | 336 |
| MS.gene026937.t1 | MTR_6g007623 | 70.136 | 221 | 63 | 1 | 1 | 221 | 1 | 218 | 3.09e-111 | 318 |
| MS.gene026937.t1 | MTR_6g007610 | 53.586 | 237 | 95 | 3 | 1 | 226 | 1 | 233 | 2.01e-82 | 246 |
| MS.gene026937.t1 | MTR_8g099730 | 48.148 | 216 | 111 | 1 | 6 | 221 | 16 | 230 | 4.86e-71 | 217 |
| MS.gene026937.t1 | MTR_3g080990 | 46.606 | 221 | 117 | 1 | 1 | 221 | 1 | 220 | 1.26e-65 | 204 |
| MS.gene026937.t1 | MTR_4g106990 | 50.000 | 188 | 93 | 1 | 28 | 215 | 35 | 221 | 8.11e-56 | 178 |
| MS.gene026937.t1 | MTR_8g099730 | 46.061 | 165 | 88 | 1 | 57 | 221 | 3 | 166 | 5.34e-49 | 159 |
| MS.gene026937.t1 | MTR_8g042490 | 35.160 | 219 | 138 | 3 | 8 | 226 | 14 | 228 | 8.19e-42 | 142 |
| MS.gene026937.t1 | MTR_3g089125 | 38.095 | 210 | 125 | 3 | 12 | 221 | 9 | 213 | 3.30e-40 | 138 |
| MS.gene026937.t1 | MTR_2g073190 | 36.652 | 221 | 136 | 3 | 6 | 225 | 12 | 229 | 5.10e-40 | 145 |
| MS.gene026937.t1 | MTR_1g029380 | 37.037 | 216 | 134 | 2 | 10 | 225 | 7 | 220 | 5.82e-40 | 137 |
| MS.gene026937.t1 | MTR_2g436310 | 37.788 | 217 | 130 | 4 | 11 | 226 | 8 | 220 | 1.93e-39 | 136 |
| MS.gene026937.t1 | MTR_1g028460 | 35.945 | 217 | 134 | 3 | 5 | 218 | 3 | 217 | 5.02e-38 | 133 |
| MS.gene026937.t1 | MTR_8g096320 | 37.379 | 206 | 125 | 3 | 10 | 214 | 11 | 213 | 9.59e-37 | 129 |
| MS.gene026937.t1 | MTR_3g098910 | 35.784 | 204 | 127 | 3 | 12 | 214 | 13 | 213 | 2.34e-33 | 122 |
| MS.gene026937.t1 | MTR_5g067530 | 37.981 | 208 | 120 | 5 | 10 | 214 | 12 | 213 | 1.79e-32 | 119 |
| MS.gene026937.t1 | MTR_5g092600 | 33.971 | 209 | 133 | 4 | 18 | 225 | 19 | 223 | 1.52e-31 | 116 |
| MS.gene026937.t1 | MTR_7g007490 | 32.870 | 216 | 142 | 2 | 10 | 225 | 12 | 224 | 1.61e-31 | 116 |
| MS.gene026937.t1 | MTR_8g096310 | 32.407 | 216 | 133 | 6 | 10 | 221 | 11 | 217 | 1.68e-31 | 116 |
| MS.gene026937.t1 | MTR_3g090950 | 32.127 | 221 | 145 | 3 | 7 | 224 | 5 | 223 | 3.98e-31 | 115 |
| MS.gene026937.t1 | MTR_3g090940 | 31.250 | 224 | 147 | 4 | 4 | 222 | 2 | 223 | 7.22e-31 | 114 |
| MS.gene026937.t1 | MTR_2g007890 | 33.171 | 205 | 129 | 5 | 12 | 214 | 16 | 214 | 2.81e-30 | 113 |
| MS.gene026937.t1 | MTR_7g405710 | 35.922 | 206 | 123 | 5 | 12 | 214 | 13 | 212 | 3.11e-27 | 105 |
| MS.gene026937.t1 | MTR_3g098930 | 35.955 | 178 | 110 | 3 | 10 | 186 | 12 | 186 | 6.46e-26 | 100 |
| MS.gene026937.t1 | MTR_7g405730 | 33.495 | 206 | 128 | 5 | 12 | 214 | 13 | 212 | 1.97e-24 | 97.8 |
| MS.gene026937.t1 | MTR_8g096320 | 33.333 | 159 | 102 | 3 | 57 | 214 | 3 | 158 | 2.69e-20 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026937.t1 | AT4G10850 | 50.885 | 226 | 100 | 5 | 5 | 221 | 7 | 230 | 3.64e-72 | 220 |
| MS.gene026937.t1 | AT5G62850 | 46.977 | 215 | 113 | 1 | 1 | 215 | 1 | 214 | 8.16e-70 | 214 |
| MS.gene026937.t1 | AT3G28007 | 53.023 | 215 | 100 | 1 | 1 | 215 | 1 | 214 | 1.01e-68 | 211 |
| MS.gene026937.t1 | AT5G62850 | 43.172 | 227 | 114 | 3 | 1 | 226 | 1 | 213 | 6.74e-64 | 197 |
| MS.gene026937.t1 | AT1G66770 | 47.170 | 212 | 110 | 2 | 5 | 215 | 7 | 217 | 1.63e-63 | 198 |
| MS.gene026937.t1 | AT5G40260 | 43.779 | 217 | 120 | 1 | 1 | 215 | 1 | 217 | 2.19e-59 | 187 |
| MS.gene026937.t1 | AT5G40260 | 43.781 | 201 | 111 | 1 | 1 | 199 | 1 | 201 | 1.71e-54 | 174 |
| MS.gene026937.t1 | AT4G15920 | 38.049 | 205 | 123 | 3 | 11 | 214 | 8 | 209 | 2.62e-43 | 146 |
| MS.gene026937.t1 | AT3G16690 | 38.835 | 206 | 120 | 4 | 11 | 214 | 8 | 209 | 4.93e-40 | 137 |
| MS.gene026937.t1 | AT3G16690 | 38.835 | 206 | 120 | 4 | 11 | 214 | 43 | 244 | 7.91e-40 | 138 |
| MS.gene026937.t1 | AT1G21460 | 35.780 | 218 | 137 | 3 | 5 | 222 | 2 | 216 | 1.83e-39 | 136 |
| MS.gene026937.t1 | AT3G14770 | 33.484 | 221 | 145 | 2 | 5 | 225 | 11 | 229 | 2.72e-39 | 135 |
| MS.gene026937.t1 | AT5G13170 | 32.287 | 223 | 147 | 3 | 1 | 222 | 4 | 223 | 9.87e-37 | 130 |
| MS.gene026937.t1 | AT5G23660 | 36.818 | 220 | 131 | 6 | 10 | 226 | 13 | 227 | 7.06e-36 | 128 |
| MS.gene026937.t1 | AT5G53190 | 36.111 | 216 | 133 | 3 | 7 | 219 | 5 | 218 | 2.53e-35 | 126 |
| MS.gene026937.t1 | AT2G39060 | 35.961 | 203 | 127 | 2 | 12 | 214 | 13 | 212 | 3.26e-34 | 123 |
| MS.gene026937.t1 | AT5G50790 | 34.884 | 215 | 133 | 5 | 2 | 214 | 3 | 212 | 6.07e-34 | 123 |
| MS.gene026937.t1 | AT4G25010 | 35.349 | 215 | 135 | 4 | 1 | 214 | 2 | 213 | 9.62e-34 | 122 |
| MS.gene026937.t1 | AT1G21460 | 36.364 | 187 | 116 | 2 | 5 | 189 | 2 | 187 | 3.01e-33 | 119 |
| MS.gene026937.t1 | AT5G50800 | 36.036 | 222 | 131 | 6 | 10 | 225 | 11 | 227 | 8.94e-33 | 120 |
| MS.gene026937.t1 | AT3G48740 | 36.493 | 211 | 126 | 6 | 10 | 217 | 13 | 218 | 9.73e-33 | 120 |
| MS.gene026937.t1 | AT3G16690 | 36.170 | 141 | 87 | 2 | 11 | 150 | 8 | 146 | 1.23e-19 | 83.6 |
Find 43 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAACGTTGTTGGAATTAT+AGG | 0.153414 | 6.3:-3229598 | MS.gene026937:intron |
| AATTGCAGTCCAACTTTCTA+TGG | 0.242047 | 6.3:-3228592 | MS.gene026937:intron |
| GTATGAAATACATGCCATTT+TGG | 0.256040 | 6.3:-3227757 | MS.gene026937:CDS |
| TTCATCAATGTTGCCAAGTA+TGG | 0.271613 | 6.3:+3228529 | None:intergenic |
| AATGGTATTGGAGCAATCTT+TGG | 0.337675 | 6.3:-3227544 | MS.gene026937:CDS |
| TCAGTAATTCGTAACGTTGT+TGG | 0.355393 | 6.3:-3229607 | MS.gene026937:CDS |
| TCATACTACATGCTTATTAC+TGG | 0.373168 | 6.3:-3227510 | MS.gene026937:CDS |
| CAACGTTACGAATTACTGAT+TGG | 0.391697 | 6.3:+3229611 | None:intergenic |
| TTTATAATTCCATAGAAAGT+TGG | 0.392063 | 6.3:+3228583 | None:intergenic |
| TTGCAGATCGGCAATGGTAT+TGG | 0.393226 | 6.3:-3227556 | MS.gene026937:intron |
| GAGAGAACTAGAGTGCTGTT+TGG | 0.402304 | 6.3:+3228466 | None:intergenic |
| AGAGAACTAGAGTGCTGTTT+GGG | 0.404951 | 6.3:+3228467 | None:intergenic |
| CAATAGTGTTGGAGTTCTCT+TGG | 0.405755 | 6.3:-3228440 | MS.gene026937:CDS |
| ACTTCCTCAATGGACTTTGC+TGG | 0.407092 | 6.3:-3227721 | MS.gene026937:CDS |
| ACTTACCCGTCCACGTTTGT+TGG | 0.415555 | 6.3:+3228384 | None:intergenic |
| GTGCTGTTTGGGTGCACAAA+AGG | 0.430396 | 6.3:+3228478 | None:intergenic |
| TTAGTCATAGAGAACCAAAA+TGG | 0.439786 | 6.3:+3227743 | None:intergenic |
| CTATGGAATTATAAAGAAGA+AGG | 0.454607 | 6.3:-3228575 | MS.gene026937:CDS |
| ACCAACAGGTCTTCTATTGT+TGG | 0.467531 | 6.3:-3227959 | MS.gene026937:CDS |
| ACCAGGACATAGATGTCAAA+GGG | 0.479534 | 6.3:+3227677 | None:intergenic |
| TAGTGTTGGAGTTCTCTTGG+AGG | 0.489531 | 6.3:-3228437 | MS.gene026937:CDS |
| GGTCAATCCAGGTCCATACT+TGG | 0.495360 | 6.3:-3228542 | MS.gene026937:CDS |
| GCTGATTAATCTTCTCATTG+AGG | 0.497551 | 6.3:-3228035 | MS.gene026937:CDS |
| CACTACATGACACTACCAAC+AGG | 0.511015 | 6.3:-3227973 | MS.gene026937:CDS |
| CCCCTTTGACATCTATGTCC+TGG | 0.515797 | 6.3:-3227678 | MS.gene026937:intron |
| AAAGAAGAAGGATGTGGAGA+AGG | 0.519853 | 6.3:-3228563 | MS.gene026937:CDS |
| CTATGCCAACAAACGTGGAC+GGG | 0.528820 | 6.3:-3228389 | MS.gene026937:intron |
| TGTCTCTCATCTTATCATCA+TGG | 0.549887 | 6.3:-3227903 | MS.gene026937:intron |
| AATTATAAAGAAGAAGGATG+TGG | 0.552595 | 6.3:-3228569 | MS.gene026937:CDS |
| TCTATGACTAACTTCCTCAA+TGG | 0.552622 | 6.3:-3227731 | MS.gene026937:CDS |
| GTTCTCTCTATCAATAGTGT+TGG | 0.558531 | 6.3:-3228451 | MS.gene026937:CDS |
| TGAATATTGCAGATCGGCAA+TGG | 0.568767 | 6.3:-3227562 | MS.gene026937:intron |
| GATGTGGAGAAGGTCAATCC+AGG | 0.586346 | 6.3:-3228553 | MS.gene026937:CDS |
| TACCAGGACATAGATGTCAA+AGG | 0.589720 | 6.3:+3227676 | None:intergenic |
| TTTATCTATGCCAACAAACG+TGG | 0.592086 | 6.3:-3228394 | MS.gene026937:CDS |
| TCTATGCCAACAAACGTGGA+CGG | 0.592900 | 6.3:-3228390 | MS.gene026937:CDS |
| ACCAACAATAGAAGACCTGT+TGG | 0.600526 | 6.3:+3227958 | None:intergenic |
| AATGTTGCCAAGTATGGACC+TGG | 0.604559 | 6.3:+3228535 | None:intergenic |
| CAACATTGTTATCAGAACAA+TGG | 0.637799 | 6.3:+3227997 | None:intergenic |
| GGACATAGATGTCAAAGGGG+TGG | 0.637928 | 6.3:+3227681 | None:intergenic |
| TAGTCCAGCAAAGTCCATTG+AGG | 0.646735 | 6.3:+3227717 | None:intergenic |
| TGGTGAGAAGAACAATCCGA+AGG | 0.672449 | 6.3:+3229319 | None:intergenic |
| CCAGGACATAGATGTCAAAG+GGG | 0.714700 | 6.3:+3227678 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTATATTAATTAACAT+GGG | + | chr6.3:3229507-3229526 | None:intergenic | 10.0% |
| !!! | AAATAAATAAAACTAAGTTT+TGG | - | chr6.3:3228371-3228390 | MS.gene026937:intron | 10.0% |
| !!! | ATATTTTCTCAAAATTTTAT+TGG | + | chr6.3:3227958-3227977 | None:intergenic | 10.0% |
| !! | ATATTATTATGTATCCAATT+AGG | + | chr6.3:3228190-3228209 | None:intergenic | 15.0% |
| !! | CAAATGTATATTAATTAACA+TGG | + | chr6.3:3229508-3229527 | None:intergenic | 15.0% |
| !!! | TTGGACATTTTAATTTAATT+AGG | - | chr6.3:3228442-3228461 | MS.gene026937:CDS | 15.0% |
| !! | ATGATCTGAATATAAACTAA+TGG | + | chr6.3:3229231-3229250 | None:intergenic | 20.0% |
| !! | CAATTGAACTACAATAATAT+AGG | + | chr6.3:3229459-3229478 | None:intergenic | 20.0% |
| !! | CTATATTATTGTAGTTCAAT+TGG | - | chr6.3:3229457-3229476 | MS.gene026937:intron | 20.0% |
| !! | GAAATTTCTTAATTCAGTTA+CGG | - | chr6.3:3227695-3227714 | MS.gene026937:CDS | 20.0% |
| !! | TAACTGAATTAAGAAATTTC+TGG | + | chr6.3:3227695-3227714 | None:intergenic | 20.0% |
| !! | TTTATAATTCCATAGAAAGT+TGG | + | chr6.3:3228513-3228532 | None:intergenic | 20.0% |
| !! | TTTCAAATTAACCAAACATT+AGG | + | chr6.3:3228925-3228944 | None:intergenic | 20.0% |
| !!! | TTGATTTTAGCTTATTCTAA+TGG | - | chr6.3:3227718-3227737 | MS.gene026937:CDS | 20.0% |
| !!! | TTTATTACATTTTGCCTAAT+TGG | - | chr6.3:3228173-3228192 | MS.gene026937:intron | 20.0% |
| !!! | TTTATTTGTACAGTGTTTTT+TGG | - | chr6.3:3228417-3228436 | MS.gene026937:CDS | 20.0% |
| !!! | TTTTGTTACATATAATGAAC+AGG | - | chr6.3:3229292-3229311 | MS.gene026937:intron | 20.0% |
| !!! | TTTTTTGATTACCTAATGTT+TGG | - | chr6.3:3228911-3228930 | MS.gene026937:intron | 20.0% |
| ! | AATATGTTAGATAAGTTACC+AGG | + | chr6.3:3229436-3229455 | None:intergenic | 25.0% |
| ! | AATCAATCAATGATGTTACT+AGG | + | chr6.3:3228750-3228769 | None:intergenic | 25.0% |
| ! | AATTATAAAGAAGAAGGATG+TGG | - | chr6.3:3228524-3228543 | MS.gene026937:CDS | 25.0% |
| ! | ATCAATCAATGATGTTACTA+GGG | + | chr6.3:3228749-3228768 | None:intergenic | 25.0% |
| ! | CTATGGAATTATAAAGAAGA+AGG | - | chr6.3:3228518-3228537 | MS.gene026937:CDS | 25.0% |
| ! | TTGTATTGAATATTGCAGAT+CGG | - | chr6.3:3229525-3229544 | MS.gene026937:intron | 25.0% |
| !!! | ATTGATGAATTGTGCTTTTT+GGG | - | chr6.3:3228578-3228597 | MS.gene026937:CDS | 25.0% |
| ACTGATAGTTTGGACATAAA+AGG | + | chr6.3:3228882-3228901 | None:intergenic | 30.0% | |
| AGAATAGTTAGTAGCATAAC+AGG | + | chr6.3:3229010-3229029 | None:intergenic | 30.0% | |
| ATCTGTTATCACTGATAGTT+TGG | + | chr6.3:3228892-3228911 | None:intergenic | 30.0% | |
| CAACATTGTTATCAGAACAA+TGG | + | chr6.3:3229099-3229118 | None:intergenic | 30.0% | |
| GTTGGCATAGATAAAAAAGA+TGG | + | chr6.3:3228694-3228713 | None:intergenic | 30.0% | |
| TACATATAATGAACAGGCAA+AGG | - | chr6.3:3229298-3229317 | MS.gene026937:intron | 30.0% | |
| TCAATCAATGATGTTACTAG+GGG | + | chr6.3:3228748-3228767 | None:intergenic | 30.0% | |
| TCATACTACATGCTTATTAC+TGG | - | chr6.3:3229583-3229602 | MS.gene026937:intron | 30.0% | |
| TTAGTCATAGAGAACCAAAA+TGG | + | chr6.3:3229353-3229372 | None:intergenic | 30.0% | |
| ! | CATTGATGAATTGTGCTTTT+TGG | - | chr6.3:3228577-3228596 | MS.gene026937:CDS | 30.0% |
| ! | GATTCATGCATTTTGCATAA+TGG | - | chr6.3:3227852-3227871 | MS.gene026937:intron | 30.0% |
| ! | TCTAATGGATATTCTGTGTT+TGG | - | chr6.3:3227733-3227752 | MS.gene026937:CDS | 30.0% |
| !! | GTATGAAATACATGCCATTT+TGG | - | chr6.3:3229336-3229355 | MS.gene026937:intron | 30.0% |
| AAACCAAGTTGCTAATCGAA+TGG | - | chr6.3:3228954-3228973 | MS.gene026937:intron | 35.0% | |
| AAGAGAAAGTTTGATTACGC+TGG | + | chr6.3:3227797-3227816 | None:intergenic | 35.0% | |
| AATCAATGATGTTACTAGGG+GGG | + | chr6.3:3228746-3228765 | None:intergenic | 35.0% | |
| AATTGCAGTCCAACTTTCTA+TGG | - | chr6.3:3228501-3228520 | MS.gene026937:CDS | 35.0% | |
| AGTTAGTAGCATAACAGGAA+TGG | + | chr6.3:3229005-3229024 | None:intergenic | 35.0% | |
| AGTTGCTAATCGAATGGTTA+AGG | - | chr6.3:3228960-3228979 | MS.gene026937:intron | 35.0% | |
| ATATTCTGTGTTTGGATGCA+GGG | - | chr6.3:3227741-3227760 | MS.gene026937:CDS | 35.0% | |
| CAACGTTACGAATTACTGAT+TGG | + | chr6.3:3227485-3227504 | None:intergenic | 35.0% | |
| CAATCAATGATGTTACTAGG+GGG | + | chr6.3:3228747-3228766 | None:intergenic | 35.0% | |
| CGTAACGTTGTTGGAATTAT+AGG | - | chr6.3:3227495-3227514 | MS.gene026937:CDS | 35.0% | |
| GCTGATTAATCTTCTCATTG+AGG | - | chr6.3:3229058-3229077 | MS.gene026937:intron | 35.0% | |
| GTTCTCTCTATCAATAGTGT+TGG | - | chr6.3:3228642-3228661 | MS.gene026937:intron | 35.0% | |
| TAACCATTCGATTAGCAACT+TGG | + | chr6.3:3228960-3228979 | None:intergenic | 35.0% | |
| TCAGTAATTCGTAACGTTGT+TGG | - | chr6.3:3227486-3227505 | MS.gene026937:CDS | 35.0% | |
| TCTATGACTAACTTCCTCAA+TGG | - | chr6.3:3229362-3229381 | MS.gene026937:intron | 35.0% | |
| TGTCTCTCATCTTATCATCA+TGG | - | chr6.3:3229190-3229209 | MS.gene026937:intron | 35.0% | |
| TTCATCAATGTTGCCAAGTA+TGG | + | chr6.3:3228567-3228586 | None:intergenic | 35.0% | |
| TTTATCTATGCCAACAAACG+TGG | - | chr6.3:3228699-3228718 | MS.gene026937:intron | 35.0% | |
| ! | AATGGTATTGGAGCAATCTT+TGG | - | chr6.3:3229549-3229568 | MS.gene026937:intron | 35.0% |
| !! | ATTAGCAACTTGGTTTTCGT+AGG | + | chr6.3:3228950-3228969 | None:intergenic | 35.0% |
| !! | TTAGCAACTTGGTTTTCGTA+GGG | + | chr6.3:3228949-3228968 | None:intergenic | 35.0% |
| !!! | TGTACAGTGTTTTTTGGCAT+TGG | - | chr6.3:3228423-3228442 | MS.gene026937:CDS | 35.0% |
| !!! | TGTGCTTTTTGGGTGTTTTA+TGG | - | chr6.3:3228588-3228607 | MS.gene026937:intron | 35.0% |
| AAAGAAGAAGGATGTGGAGA+AGG | - | chr6.3:3228530-3228549 | MS.gene026937:CDS | 40.0% | |
| AAGTGTTCGTGCATTAGATG+AGG | - | chr6.3:3228040-3228059 | MS.gene026937:CDS | 40.0% | |
| ACCAACAATAGAAGACCTGT+TGG | + | chr6.3:3229138-3229157 | None:intergenic | 40.0% | |
| ACCAACAGGTCTTCTATTGT+TGG | - | chr6.3:3229134-3229153 | MS.gene026937:intron | 40.0% | |
| ACCAGGACATAGATGTCAAA+GGG | + | chr6.3:3229419-3229438 | None:intergenic | 40.0% | |
| GATATTCTGTGTTTGGATGC+AGG | - | chr6.3:3227740-3227759 | MS.gene026937:CDS | 40.0% | |
| TACCAGGACATAGATGTCAA+AGG | + | chr6.3:3229420-3229439 | None:intergenic | 40.0% | |
| TGAATATTGCAGATCGGCAA+TGG | - | chr6.3:3229531-3229550 | MS.gene026937:intron | 40.0% | |
| ! | CAATAGTGTTGGAGTTCTCT+TGG | - | chr6.3:3228653-3228672 | MS.gene026937:intron | 40.0% |
| ! | GCAGGGAATTTTATCTCCTT+CGG | - | chr6.3:3227758-3227777 | MS.gene026937:CDS | 40.0% |
| !! | AGAGAACTAGAGTGCTGTTT+GGG | + | chr6.3:3228629-3228648 | None:intergenic | 40.0% |
| AATGTTGCCAAGTATGGACC+TGG | + | chr6.3:3228561-3228580 | None:intergenic | 45.0% | |
| AGTGTACTTGACACTGACAC+CGG | - | chr6.3:3227878-3227897 | MS.gene026937:intron | 45.0% | |
| CACTACATGACACTACCAAC+AGG | - | chr6.3:3229120-3229139 | MS.gene026937:intron | 45.0% | |
| CCAGGACATAGATGTCAAAG+GGG | + | chr6.3:3229418-3229437 | None:intergenic | 45.0% | |
| TACGAGTGTAGTGTAGATGC+CGG | - | chr6.3:3227993-3228012 | MS.gene026937:CDS | 45.0% | |
| TAGTCCAGCAAAGTCCATTG+AGG | + | chr6.3:3229379-3229398 | None:intergenic | 45.0% | |
| TAGTGTAGATGCCGGATAAC+CGG | - | chr6.3:3228001-3228020 | MS.gene026937:CDS | 45.0% | |
| TCTATGCCAACAAACGTGGA+CGG | - | chr6.3:3228703-3228722 | MS.gene026937:intron | 45.0% | |
| TGGTGAGAAGAACAATCCGA+AGG | + | chr6.3:3227777-3227796 | None:intergenic | 45.0% | |
| TTGCAGATCGGCAATGGTAT+TGG | - | chr6.3:3229537-3229556 | MS.gene026937:intron | 45.0% | |
| ! | ACTTCCTCAATGGACTTTGC+TGG | - | chr6.3:3229372-3229391 | MS.gene026937:intron | 45.0% |
| ! | CTTCTGATTGAAAGCGTGTC+CGG | + | chr6.3:3228023-3228042 | None:intergenic | 45.0% |
| ! | TAGTGTTGGAGTTCTCTTGG+AGG | - | chr6.3:3228656-3228675 | MS.gene026937:intron | 45.0% |
| !! | GAGAGAACTAGAGTGCTGTT+TGG | + | chr6.3:3228630-3228649 | None:intergenic | 45.0% |
| ACTTACCCGTCCACGTTTGT+TGG | + | chr6.3:3228712-3228731 | None:intergenic | 50.0% | |
| CCCCTTTGACATCTATGTCC+TGG | - | chr6.3:3229415-3229434 | MS.gene026937:intron | 50.0% | |
| CTATGCCAACAAACGTGGAC+GGG | - | chr6.3:3228704-3228723 | MS.gene026937:intron | 50.0% | |
| GATGTGGAGAAGGTCAATCC+AGG | - | chr6.3:3228540-3228559 | MS.gene026937:CDS | 50.0% | |
| GGACATAGATGTCAAAGGGG+TGG | + | chr6.3:3229415-3229434 | None:intergenic | 50.0% | |
| GGTCAATCCAGGTCCATACT+TGG | - | chr6.3:3228551-3228570 | MS.gene026937:CDS | 50.0% | |
| ! | TGAAAGCGTGTCCGGTTATC+CGG | + | chr6.3:3228015-3228034 | None:intergenic | 50.0% |
| !! | GTGCTGTTTGGGTGCACAAA+AGG | + | chr6.3:3228618-3228637 | None:intergenic | 50.0% |
| CACGACACTGACACGGACAC+CGG | - | chr6.3:3227906-3227925 | MS.gene026937:CDS | 60.0% | |
| GGCACCACACGACACTGACA+CGG | - | chr6.3:3227899-3227918 | MS.gene026937:intron | 60.0% | |
| GTCGACGTGTCAGTGTCGTG+TGG | + | chr6.3:3227934-3227953 | None:intergenic | 60.0% | |
| GTGTCAGTGTCGTGTGGTGC+CGG | + | chr6.3:3227900-3227919 | None:intergenic | 60.0% | |
| GTGTCCGTGTCAGTGTCGTG+TGG | + | chr6.3:3227906-3227925 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 3227474 | 3229641 | 3227474 | ID=MS.gene026937 |
| chr6.3 | mRNA | 3227474 | 3229641 | 3227474 | ID=MS.gene026937.t1;Parent=MS.gene026937 |
| chr6.3 | exon | 3229599 | 3229641 | 3229599 | ID=MS.gene026937.t1.exon1;Parent=MS.gene026937.t1 |
| chr6.3 | CDS | 3229599 | 3229641 | 3229599 | ID=cds.MS.gene026937.t1;Parent=MS.gene026937.t1 |
| chr6.3 | exon | 3229317 | 3229353 | 3229317 | ID=MS.gene026937.t1.exon2;Parent=MS.gene026937.t1 |
| chr6.3 | CDS | 3229317 | 3229353 | 3229317 | ID=cds.MS.gene026937.t1;Parent=MS.gene026937.t1 |
| chr6.3 | exon | 3228390 | 3228606 | 3228390 | ID=MS.gene026937.t1.exon3;Parent=MS.gene026937.t1 |
| chr6.3 | CDS | 3228390 | 3228606 | 3228390 | ID=cds.MS.gene026937.t1;Parent=MS.gene026937.t1 |
| chr6.3 | exon | 3227904 | 3228065 | 3227904 | ID=MS.gene026937.t1.exon4;Parent=MS.gene026937.t1 |
| chr6.3 | CDS | 3227904 | 3228065 | 3227904 | ID=cds.MS.gene026937.t1;Parent=MS.gene026937.t1 |
| chr6.3 | exon | 3227679 | 3227801 | 3227679 | ID=MS.gene026937.t1.exon5;Parent=MS.gene026937.t1 |
| chr6.3 | CDS | 3227679 | 3227801 | 3227679 | ID=cds.MS.gene026937.t1;Parent=MS.gene026937.t1 |
| chr6.3 | exon | 3227474 | 3227572 | 3227474 | ID=MS.gene026937.t1.exon6;Parent=MS.gene026937.t1 |
| chr6.3 | CDS | 3227474 | 3227572 | 3227474 | ID=cds.MS.gene026937.t1;Parent=MS.gene026937.t1 |
| Gene Sequence |
| Protein sequence |
