Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026939.t1 | XP_004489295.1 | 73.3 | 221 | 59 | 0 | 1 | 221 | 1 | 221 | 3.60E-87 | 331.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026939.t1 | Q8W0K2 | 56.7 | 215 | 92 | 1 | 1 | 215 | 1 | 214 | 7.7e-62 | 238.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026939.t1 | A0A1S2XH55 | 73.3 | 221 | 59 | 0 | 1 | 221 | 1 | 221 | 2.6e-87 | 331.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25769 | MS.gene026939 | PPI |
| MS.gene009331 | MS.gene026939 | PPI |
| MS.gene69746 | MS.gene026939 | PPI |
| MS.gene048962 | MS.gene026939 | PPI |
| MS.gene31850 | MS.gene026939 | PPI |
| MS.gene90281 | MS.gene026939 | PPI |
| MS.gene026939 | MS.gene70529 | PPI |
| MS.gene026939 | MS.gene81949 | PPI |
| MS.gene026939 | MS.gene46188 | PPI |
| MS.gene52346 | MS.gene026939 | PPI |
| MS.gene02646 | MS.gene026939 | PPI |
| MS.gene013686 | MS.gene026939 | PPI |
| MS.gene02493 | MS.gene026939 | PPI |
| MS.gene009329 | MS.gene026939 | PPI |
| MS.gene55828 | MS.gene026939 | PPI |
| MS.gene026939 | MS.gene93151 | PPI |
| MS.gene026679 | MS.gene026939 | PPI |
| MS.gene044269 | MS.gene026939 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026939.t1 | MTR_6g007633 | 77.376 | 221 | 50 | 0 | 1 | 221 | 1 | 221 | 7.43e-124 | 350 |
| MS.gene026939.t1 | MTR_6g007637 | 74.771 | 218 | 55 | 0 | 1 | 218 | 2 | 219 | 1.10e-116 | 333 |
| MS.gene026939.t1 | MTR_6g007623 | 70.136 | 221 | 63 | 1 | 1 | 221 | 1 | 218 | 4.77e-110 | 315 |
| MS.gene026939.t1 | MTR_6g007610 | 53.165 | 237 | 96 | 3 | 1 | 226 | 1 | 233 | 2.85e-81 | 243 |
| MS.gene026939.t1 | MTR_8g099730 | 48.148 | 216 | 111 | 1 | 6 | 221 | 16 | 230 | 8.84e-71 | 217 |
| MS.gene026939.t1 | MTR_3g080990 | 46.606 | 221 | 117 | 1 | 1 | 221 | 1 | 220 | 4.79e-65 | 202 |
| MS.gene026939.t1 | MTR_4g106990 | 48.958 | 192 | 97 | 1 | 28 | 219 | 35 | 225 | 5.97e-55 | 176 |
| MS.gene026939.t1 | MTR_8g099730 | 46.061 | 165 | 88 | 1 | 57 | 221 | 3 | 166 | 8.24e-49 | 159 |
| MS.gene026939.t1 | MTR_8g042490 | 35.023 | 217 | 139 | 2 | 8 | 224 | 14 | 228 | 1.88e-41 | 141 |
| MS.gene026939.t1 | MTR_2g073190 | 37.104 | 221 | 135 | 3 | 6 | 225 | 12 | 229 | 1.55e-40 | 147 |
| MS.gene026939.t1 | MTR_3g089125 | 38.916 | 203 | 122 | 2 | 12 | 214 | 9 | 209 | 1.04e-39 | 137 |
| MS.gene026939.t1 | MTR_1g029380 | 37.500 | 216 | 133 | 2 | 10 | 225 | 7 | 220 | 1.06e-39 | 137 |
| MS.gene026939.t1 | MTR_2g436310 | 39.450 | 218 | 125 | 6 | 11 | 226 | 8 | 220 | 1.69e-37 | 131 |
| MS.gene026939.t1 | MTR_8g096320 | 37.864 | 206 | 124 | 3 | 10 | 214 | 11 | 213 | 7.11e-37 | 130 |
| MS.gene026939.t1 | MTR_1g028460 | 35.945 | 217 | 134 | 3 | 5 | 218 | 3 | 217 | 1.71e-36 | 129 |
| MS.gene026939.t1 | MTR_3g098910 | 35.784 | 204 | 127 | 3 | 12 | 214 | 13 | 213 | 7.61e-33 | 120 |
| MS.gene026939.t1 | MTR_5g067530 | 37.037 | 216 | 127 | 5 | 10 | 222 | 12 | 221 | 3.27e-32 | 118 |
| MS.gene026939.t1 | MTR_7g007490 | 32.743 | 226 | 140 | 3 | 10 | 226 | 12 | 234 | 1.05e-31 | 116 |
| MS.gene026939.t1 | MTR_5g092600 | 34.450 | 209 | 132 | 4 | 18 | 225 | 19 | 223 | 2.48e-31 | 115 |
| MS.gene026939.t1 | MTR_3g090940 | 31.776 | 214 | 141 | 3 | 4 | 214 | 2 | 213 | 9.12e-31 | 114 |
| MS.gene026939.t1 | MTR_8g096310 | 32.536 | 209 | 131 | 5 | 10 | 214 | 11 | 213 | 1.42e-30 | 114 |
| MS.gene026939.t1 | MTR_2g007890 | 33.796 | 216 | 131 | 6 | 12 | 221 | 16 | 225 | 1.45e-30 | 114 |
| MS.gene026939.t1 | MTR_3g090950 | 32.127 | 221 | 145 | 3 | 7 | 224 | 5 | 223 | 2.15e-30 | 113 |
| MS.gene026939.t1 | MTR_7g405710 | 35.681 | 213 | 128 | 5 | 12 | 221 | 13 | 219 | 7.16e-28 | 107 |
| MS.gene026939.t1 | MTR_3g098930 | 36.517 | 178 | 109 | 3 | 10 | 186 | 12 | 186 | 2.01e-26 | 101 |
| MS.gene026939.t1 | MTR_7g405730 | 33.495 | 206 | 128 | 5 | 12 | 214 | 13 | 212 | 4.94e-24 | 96.7 |
| MS.gene026939.t1 | MTR_8g096320 | 33.962 | 159 | 101 | 3 | 57 | 214 | 3 | 158 | 1.79e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026939.t1 | AT4G10850 | 50.446 | 224 | 107 | 4 | 5 | 226 | 7 | 228 | 4.55e-71 | 218 |
| MS.gene026939.t1 | AT5G62850 | 45.852 | 229 | 118 | 3 | 1 | 224 | 1 | 228 | 2.22e-69 | 213 |
| MS.gene026939.t1 | AT3G28007 | 52.558 | 215 | 101 | 1 | 1 | 215 | 1 | 214 | 2.01e-67 | 208 |
| MS.gene026939.t1 | AT5G62850 | 44.053 | 227 | 112 | 3 | 1 | 226 | 1 | 213 | 8.48e-64 | 197 |
| MS.gene026939.t1 | AT1G66770 | 46.544 | 217 | 114 | 2 | 5 | 220 | 7 | 222 | 5.82e-63 | 197 |
| MS.gene026939.t1 | AT5G40260 | 44.053 | 227 | 124 | 2 | 1 | 224 | 1 | 227 | 1.74e-60 | 190 |
| MS.gene026939.t1 | AT5G40260 | 44.279 | 201 | 110 | 1 | 1 | 199 | 1 | 201 | 1.52e-54 | 174 |
| MS.gene026939.t1 | AT4G15920 | 38.049 | 205 | 123 | 3 | 11 | 214 | 8 | 209 | 1.52e-42 | 144 |
| MS.gene026939.t1 | AT1G21460 | 36.697 | 218 | 135 | 3 | 5 | 222 | 2 | 216 | 5.09e-40 | 138 |
| MS.gene026939.t1 | AT3G14770 | 33.937 | 221 | 144 | 2 | 5 | 225 | 11 | 229 | 1.13e-39 | 136 |
| MS.gene026939.t1 | AT3G16690 | 38.389 | 211 | 124 | 4 | 11 | 219 | 8 | 214 | 1.81e-39 | 136 |
| MS.gene026939.t1 | AT3G16690 | 38.389 | 211 | 124 | 4 | 11 | 219 | 43 | 249 | 3.18e-39 | 136 |
| MS.gene026939.t1 | AT5G13170 | 32.895 | 228 | 148 | 4 | 1 | 226 | 4 | 228 | 7.17e-37 | 131 |
| MS.gene026939.t1 | AT5G23660 | 37.273 | 220 | 130 | 6 | 10 | 226 | 13 | 227 | 6.49e-36 | 128 |
| MS.gene026939.t1 | AT2G39060 | 35.714 | 210 | 132 | 2 | 12 | 221 | 13 | 219 | 6.06e-35 | 125 |
| MS.gene026939.t1 | AT5G53190 | 36.574 | 216 | 132 | 3 | 7 | 219 | 5 | 218 | 6.20e-35 | 125 |
| MS.gene026939.t1 | AT5G50790 | 35.349 | 215 | 132 | 5 | 2 | 214 | 3 | 212 | 9.90e-35 | 125 |
| MS.gene026939.t1 | AT4G25010 | 36.697 | 218 | 131 | 5 | 1 | 214 | 2 | 216 | 4.72e-34 | 123 |
| MS.gene026939.t1 | AT1G21460 | 36.898 | 187 | 115 | 2 | 5 | 189 | 2 | 187 | 2.35e-33 | 119 |
| MS.gene026939.t1 | AT5G50800 | 36.937 | 222 | 129 | 6 | 10 | 225 | 11 | 227 | 2.71e-33 | 122 |
| MS.gene026939.t1 | AT3G48740 | 36.967 | 211 | 125 | 6 | 10 | 217 | 13 | 218 | 6.79e-33 | 120 |
| MS.gene026939.t1 | AT3G16690 | 33.533 | 167 | 98 | 4 | 11 | 176 | 8 | 162 | 8.01e-20 | 84.0 |
Find 44 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAACGTTGTTGGAATTAT+AGG | 0.153414 | 6.3:-3202115 | MS.gene026939:intron |
| CATTGATGAATTGCGCATTT+TGG | 0.164426 | 6.3:-3201027 | MS.gene026939:CDS |
| AATTGCAGTCCAACTTTCTA+TGG | 0.242047 | 6.3:-3201103 | MS.gene026939:intron |
| TTCATCAATGTTGCTAAGTA+TGG | 0.254808 | 6.3:+3201040 | None:intergenic |
| GTGTGACATACATGCCATTT+TGG | 0.264110 | 6.3:-3200242 | MS.gene026939:CDS |
| TCATACTCTTTACTTATTAC+TGG | 0.264569 | 6.3:-3199989 | MS.gene026939:CDS |
| AATGGTATTGGAGCAATCTT+TGG | 0.337675 | 6.3:-3200023 | MS.gene026939:CDS |
| TCAGTAATTCGTAACGTTGT+TGG | 0.368102 | 6.3:-3202124 | MS.gene026939:CDS |
| TTTATAATTCCATAGAAAGT+TGG | 0.392063 | 6.3:+3201094 | None:intergenic |
| TTGCAGATCGGCAATGGTAT+TGG | 0.393226 | 6.3:-3200035 | MS.gene026939:intron |
| GAGAGAACTAGAGTGCTGTT+TGG | 0.402304 | 6.3:+3200977 | None:intergenic |
| AGAGAACTAGAGTGCTGTTT+GGG | 0.404951 | 6.3:+3200978 | None:intergenic |
| CAATAGTGTTGGAGTTCTCT+TGG | 0.405755 | 6.3:-3200951 | MS.gene026939:CDS |
| ACTTCCTCAATGGACTTTGC+TGG | 0.407092 | 6.3:-3200206 | MS.gene026939:CDS |
| ACTTACCCGTCCACGTTTGT+TGG | 0.415555 | 6.3:+3200895 | None:intergenic |
| GTGCTGTTTGGGTGCACAAA+AGG | 0.430396 | 6.3:+3200989 | None:intergenic |
| TTAGTCATAGAGAACCAAAA+TGG | 0.439786 | 6.3:+3200228 | None:intergenic |
| CTATGGAATTATAAAGAAGA+AGG | 0.454607 | 6.3:-3201086 | MS.gene026939:CDS |
| ACCAACAGGTCTTCTATTGT+TGG | 0.467531 | 6.3:-3200444 | MS.gene026939:CDS |
| ACCAGGACATAGATGTCAAA+GGG | 0.479534 | 6.3:+3200162 | None:intergenic |
| TAGTGTTGGAGTTCTCTTGG+AGG | 0.489531 | 6.3:-3200948 | MS.gene026939:CDS |
| GCTGATTAATCTTCTCATTG+AGG | 0.497551 | 6.3:-3200520 | MS.gene026939:CDS |
| CACTACATGACACTACCAAC+AGG | 0.511015 | 6.3:-3200458 | MS.gene026939:CDS |
| CCCCTTTGACATCTATGTCC+TGG | 0.515797 | 6.3:-3200163 | MS.gene026939:intron |
| CTATGCCAACAAACGTGGAC+GGG | 0.528820 | 6.3:-3200900 | MS.gene026939:intron |
| TGTCTCTCATCTTATCATCA+TGG | 0.549887 | 6.3:-3200388 | MS.gene026939:intron |
| TCTATGACTAACTTCCTCAA+TGG | 0.552622 | 6.3:-3200216 | MS.gene026939:CDS |
| CTTTACTTATTACTGGTGCA+AGG | 0.554760 | 6.3:-3199982 | MS.gene026939:CDS |
| TGGCATGTATGTCACACTCT+TGG | 0.556191 | 6.3:+3200248 | None:intergenic |
| GTTCTCTCTATCAATAGTGT+TGG | 0.558531 | 6.3:-3200962 | MS.gene026939:CDS |
| CAACGTTACGAATTACTGAC+TGG | 0.561100 | 6.3:+3202128 | None:intergenic |
| TGAATATTGCAGATCGGCAA+TGG | 0.568767 | 6.3:-3200041 | MS.gene026939:intron |
| GATGTCGAGAAGGTCAATCC+AGG | 0.584037 | 6.3:-3201064 | MS.gene026939:CDS |
| TACCAGGACATAGATGTCAA+AGG | 0.589720 | 6.3:+3200161 | None:intergenic |
| TTTATCTATGCCAACAAACG+TGG | 0.592086 | 6.3:-3200905 | MS.gene026939:CDS |
| TCTATGCCAACAAACGTGGA+CGG | 0.592900 | 6.3:-3200901 | MS.gene026939:CDS |
| AATGTTGCTAAGTATGGACC+TGG | 0.600262 | 6.3:+3201046 | None:intergenic |
| ACCAACAATAGAAGACCTGT+TGG | 0.600526 | 6.3:+3200443 | None:intergenic |
| AAAGAAGAAGGATGTCGAGA+AGG | 0.602824 | 6.3:-3201074 | MS.gene026939:CDS |
| CAACATTGTTATCAGAACAA+TGG | 0.637799 | 6.3:+3200482 | None:intergenic |
| GGACATAGATGTCAAAGGGG+TGG | 0.637928 | 6.3:+3200166 | None:intergenic |
| TAGTCCAGCAAAGTCCATTG+AGG | 0.646735 | 6.3:+3200202 | None:intergenic |
| TGGTGAGAAGAACAATCCGA+AGG | 0.672449 | 6.3:+3201830 | None:intergenic |
| CCAGGACATAGATGTCAAAG+GGG | 0.714700 | 6.3:+3200163 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTATATTAATTAACAT+GGG | + | chr6.3:3202024-3202043 | None:intergenic | 10.0% |
| !!! | AAATAAATAAAACTAAGTTT+TGG | - | chr6.3:3200856-3200875 | MS.gene026939:intron | 10.0% |
| !!! | ATATTTTTCCAAAATTTTAT+TGG | + | chr6.3:3200438-3200457 | None:intergenic | 10.0% |
| !! | ATATATTATTGTAGTTCAAT+TGG | - | chr6.3:3201974-3201993 | MS.gene026939:intron | 15.0% |
| !! | ATATTATTATGTATCCAATT+AGG | + | chr6.3:3200669-3200688 | None:intergenic | 15.0% |
| !! | CAAATGTATATTAATTAACA+TGG | + | chr6.3:3202025-3202044 | None:intergenic | 15.0% |
| !! | TGAACTACAATAATATATAT+AGG | + | chr6.3:3201972-3201991 | None:intergenic | 15.0% |
| !!! | TATTTTTATTACCTAATGTT+TGG | - | chr6.3:3201422-3201441 | MS.gene026939:intron | 15.0% |
| !!! | TTGGACATTTTAATTTAATT+AGG | - | chr6.3:3200927-3200946 | MS.gene026939:CDS | 15.0% |
| !! | ATGATCTGAATATAAACTAA+TGG | + | chr6.3:3201742-3201761 | None:intergenic | 20.0% |
| !! | TAATAACTCAATGAATAGTT+TGG | + | chr6.3:3201375-3201394 | None:intergenic | 20.0% |
| !! | TTTATAATTCCATAGAAAGT+TGG | + | chr6.3:3200998-3201017 | None:intergenic | 20.0% |
| !! | TTTCAAATTAACCAAACATT+AGG | + | chr6.3:3201436-3201455 | None:intergenic | 20.0% |
| !!! | TTGATTTTAGCTTATTCTAA+TGG | - | chr6.3:3200203-3200222 | MS.gene026939:CDS | 20.0% |
| !!! | TTTATTACATTTTGCCTAAT+TGG | - | chr6.3:3200652-3200671 | MS.gene026939:intron | 20.0% |
| !!! | TTTATTTGTACAGTGTTTTT+TGG | - | chr6.3:3200902-3200921 | MS.gene026939:CDS | 20.0% |
| !!! | TTTTGTTACATATAATGAAC+AGG | - | chr6.3:3201803-3201822 | MS.gene026939:intron | 20.0% |
| ! | AATCAATCAATGATGTTACT+AGG | + | chr6.3:3201235-3201254 | None:intergenic | 25.0% |
| ! | ATCAATCAATGATGTTACTA+GGG | + | chr6.3:3201234-3201253 | None:intergenic | 25.0% |
| ! | ATGAATAGTTTGGACATAAA+AGG | + | chr6.3:3201365-3201384 | None:intergenic | 25.0% |
| ! | CTATGGAATTATAAAGAAGA+AGG | - | chr6.3:3201003-3201022 | MS.gene026939:CDS | 25.0% |
| ! | GAAGTTTCTTAATTCAGTTA+CGG | - | chr6.3:3200180-3200199 | MS.gene026939:CDS | 25.0% |
| ! | TAACTGAATTAAGAAACTTC+TGG | + | chr6.3:3200180-3200199 | None:intergenic | 25.0% |
| ! | TATATGTTAGATAAGTTACC+AGG | + | chr6.3:3201947-3201966 | None:intergenic | 25.0% |
| ! | TCATACTCTTTACTTATTAC+TGG | - | chr6.3:3202100-3202119 | MS.gene026939:intron | 25.0% |
| ! | TTGTATTGAATATTGCAGAT+CGG | - | chr6.3:3202042-3202061 | MS.gene026939:intron | 25.0% |
| AGAATAGTTAGTAGCATAAC+AGG | + | chr6.3:3201521-3201540 | None:intergenic | 30.0% | |
| CAACATTGTTATCAGAACAA+TGG | + | chr6.3:3201610-3201629 | None:intergenic | 30.0% | |
| GTTGGCATAGATAAAAAAGA+TGG | + | chr6.3:3201179-3201198 | None:intergenic | 30.0% | |
| TACATATAATGAACAGGCAA+AGG | - | chr6.3:3201809-3201828 | MS.gene026939:intron | 30.0% | |
| TCAATCAATGATGTTACTAG+GGG | + | chr6.3:3201233-3201252 | None:intergenic | 30.0% | |
| TGATATAGTGTACTTAACAC+CGG | - | chr6.3:3200357-3200376 | MS.gene026939:intron | 30.0% | |
| TTAGTCATAGAGAACCAAAA+TGG | + | chr6.3:3201864-3201883 | None:intergenic | 30.0% | |
| TTCATCAATGTTGCTAAGTA+TGG | + | chr6.3:3201052-3201071 | None:intergenic | 30.0% | |
| ! | ATTGATGAATTGCGCATTTT+GGG | - | chr6.3:3201063-3201082 | MS.gene026939:CDS | 30.0% |
| ! | CGTCAACACCAATAAAATTT+TGG | - | chr6.3:3200427-3200446 | MS.gene026939:CDS | 30.0% |
| ! | TCTAATGGATATTCTGTGTT+TGG | - | chr6.3:3200218-3200237 | MS.gene026939:CDS | 30.0% |
| AAACCAAGTTGCTAATCGAA+TGG | - | chr6.3:3201465-3201484 | MS.gene026939:intron | 35.0% | |
| AAGAGAAAGTTAGATTACGC+TGG | + | chr6.3:3200282-3200301 | None:intergenic | 35.0% | |
| AAGTGTTTGTGCATTAGATG+AGG | - | chr6.3:3200520-3200539 | MS.gene026939:CDS | 35.0% | |
| AATCAATGATGTTACTAGGG+GGG | + | chr6.3:3201231-3201250 | None:intergenic | 35.0% | |
| AATTGCAGTCCAACTTTCTA+TGG | - | chr6.3:3200986-3201005 | MS.gene026939:CDS | 35.0% | |
| AGTTAGTAGCATAACAGGAA+TGG | + | chr6.3:3201516-3201535 | None:intergenic | 35.0% | |
| AGTTGCTAATCGAATGGTTA+AGG | - | chr6.3:3201471-3201490 | MS.gene026939:intron | 35.0% | |
| ATATTCTGTGTTTGGATGCA+GGG | - | chr6.3:3200226-3200245 | MS.gene026939:CDS | 35.0% | |
| CAATCAATGATGTTACTAGG+GGG | + | chr6.3:3201232-3201251 | None:intergenic | 35.0% | |
| CGTAACGTTGTTGGAATTAT+AGG | - | chr6.3:3199974-3199993 | MS.gene026939:CDS | 35.0% | |
| CTTTACTTATTACTGGTGCA+AGG | - | chr6.3:3202107-3202126 | MS.gene026939:intron | 35.0% | |
| GCTGATTAATCTTCTCATTG+AGG | - | chr6.3:3201569-3201588 | MS.gene026939:intron | 35.0% | |
| GTTCTCTCTATCAATAGTGT+TGG | - | chr6.3:3201127-3201146 | MS.gene026939:intron | 35.0% | |
| TAACCATTCGATTAGCAACT+TGG | + | chr6.3:3201471-3201490 | None:intergenic | 35.0% | |
| TACAAGTGTAGTGTAGATGT+CGG | - | chr6.3:3200473-3200492 | MS.gene026939:CDS | 35.0% | |
| TCAGTAATTCGTAACGTTGT+TGG | - | chr6.3:3199965-3199984 | MS.gene026939:CDS | 35.0% | |
| TCTATGACTAACTTCCTCAA+TGG | - | chr6.3:3201873-3201892 | MS.gene026939:intron | 35.0% | |
| TGTCTCTCATCTTATCATCA+TGG | - | chr6.3:3201701-3201720 | MS.gene026939:intron | 35.0% | |
| TTTATCTATGCCAACAAACG+TGG | - | chr6.3:3201184-3201203 | MS.gene026939:intron | 35.0% | |
| ! | AATGGTATTGGAGCAATCTT+TGG | - | chr6.3:3202066-3202085 | MS.gene026939:intron | 35.0% |
| ! | CATTGATGAATTGCGCATTT+TGG | - | chr6.3:3201062-3201081 | MS.gene026939:CDS | 35.0% |
| !! | ATTAGCAACTTGGTTTTCGT+AGG | + | chr6.3:3201461-3201480 | None:intergenic | 35.0% |
| !! | TTAGCAACTTGGTTTTCGTA+GGG | + | chr6.3:3201460-3201479 | None:intergenic | 35.0% |
| !!! | TGTACAGTGTTTTTTGGCAT+TGG | - | chr6.3:3200908-3200927 | MS.gene026939:CDS | 35.0% |
| AAAGAAGAAGGATGTCGAGA+AGG | - | chr6.3:3201015-3201034 | MS.gene026939:CDS | 40.0% | |
| AATGTTGCTAAGTATGGACC+TGG | + | chr6.3:3201046-3201065 | None:intergenic | 40.0% | |
| ACCAACAATAGAAGACCTGT+TGG | + | chr6.3:3201649-3201668 | None:intergenic | 40.0% | |
| ACCAACAGGTCTTCTATTGT+TGG | - | chr6.3:3201645-3201664 | MS.gene026939:intron | 40.0% | |
| ACCAGGACATAGATGTCAAA+GGG | + | chr6.3:3201930-3201949 | None:intergenic | 40.0% | |
| CAACGTTACGAATTACTGAC+TGG | + | chr6.3:3199964-3199983 | None:intergenic | 40.0% | |
| GATATTCTGTGTTTGGATGC+AGG | - | chr6.3:3200225-3200244 | MS.gene026939:CDS | 40.0% | |
| TACCAGGACATAGATGTCAA+AGG | + | chr6.3:3201931-3201950 | None:intergenic | 40.0% | |
| TAGTGTAGATGTCGGATAAC+CGG | - | chr6.3:3200481-3200500 | MS.gene026939:CDS | 40.0% | |
| TGAATATTGCAGATCGGCAA+TGG | - | chr6.3:3202048-3202067 | MS.gene026939:intron | 40.0% | |
| ! | CAATAGTGTTGGAGTTCTCT+TGG | - | chr6.3:3201138-3201157 | MS.gene026939:intron | 40.0% |
| ! | GCAGGGAATTTTATCTCCTT+CGG | - | chr6.3:3200243-3200262 | MS.gene026939:CDS | 40.0% |
| !! | AGAGAACTAGAGTGCTGTTT+GGG | + | chr6.3:3201114-3201133 | None:intergenic | 40.0% |
| !! | GTGTGACATACATGCCATTT+TGG | - | chr6.3:3201847-3201866 | MS.gene026939:intron | 40.0% |
| !! | TGCGCATTTTGGGTGTTTTA+TGG | - | chr6.3:3201073-3201092 | MS.gene026939:CDS | 40.0% |
| CACTACATGACACTACCAAC+AGG | - | chr6.3:3201631-3201650 | MS.gene026939:intron | 45.0% | |
| CCAGGACATAGATGTCAAAG+GGG | + | chr6.3:3201929-3201948 | None:intergenic | 45.0% | |
| TAGTCCAGCAAAGTCCATTG+AGG | + | chr6.3:3201890-3201909 | None:intergenic | 45.0% | |
| TCTATGCCAACAAACGTGGA+CGG | - | chr6.3:3201188-3201207 | MS.gene026939:intron | 45.0% | |
| TGGCATGTATGTCACACTCT+TGG | + | chr6.3:3201844-3201863 | None:intergenic | 45.0% | |
| TGGTGAGAAGAACAATCCGA+AGG | + | chr6.3:3200262-3200281 | None:intergenic | 45.0% | |
| TTGCAGATCGGCAATGGTAT+TGG | - | chr6.3:3202054-3202073 | MS.gene026939:intron | 45.0% | |
| ! | ACTTCCTCAATGGACTTTGC+TGG | - | chr6.3:3201883-3201902 | MS.gene026939:intron | 45.0% |
| ! | CTTCTGATTGAAAGCGTGTC+CGG | + | chr6.3:3200503-3200522 | None:intergenic | 45.0% |
| ! | TAGTGTTGGAGTTCTCTTGG+AGG | - | chr6.3:3201141-3201160 | MS.gene026939:intron | 45.0% |
| !! | GAGAGAACTAGAGTGCTGTT+TGG | + | chr6.3:3201115-3201134 | None:intergenic | 45.0% |
| ACTTACCCGTCCACGTTTGT+TGG | + | chr6.3:3201197-3201216 | None:intergenic | 50.0% | |
| CCCCTTTGACATCTATGTCC+TGG | - | chr6.3:3201926-3201945 | MS.gene026939:intron | 50.0% | |
| CTATGCCAACAAACGTGGAC+GGG | - | chr6.3:3201189-3201208 | MS.gene026939:intron | 50.0% | |
| GATGTCGAGAAGGTCAATCC+AGG | - | chr6.3:3201025-3201044 | MS.gene026939:CDS | 50.0% | |
| GGACATAGATGTCAAAGGGG+TGG | + | chr6.3:3201926-3201945 | None:intergenic | 50.0% | |
| !! | GTGCTGTTTGGGTGCACAAA+AGG | + | chr6.3:3201103-3201122 | None:intergenic | 50.0% |
| ACACCGGCACGACACTGACA+CGG | - | chr6.3:3200373-3200392 | MS.gene026939:intron | 60.0% | |
| GGCACCACACGACACTGACA+CGG | - | chr6.3:3200401-3200420 | MS.gene026939:CDS | 60.0% | |
| GTGTCAGTGTCGTGTGGTGC+CGG | + | chr6.3:3200402-3200421 | None:intergenic | 60.0% | |
| GTGTCCGTGTCAGTGTCGTG+TGG | + | chr6.3:3200408-3200427 | None:intergenic | 60.0% | |
| CACGACACTGACACGGACGC+CGG | - | chr6.3:3200380-3200399 | MS.gene026939:intron | 65.0% | |
| CGTCCGTGTCAGTGTCGTGC+CGG | + | chr6.3:3200379-3200398 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 3199953 | 3202158 | 3199953 | ID=MS.gene026939 |
| chr6.3 | mRNA | 3199953 | 3202158 | 3199953 | ID=MS.gene026939.t1;Parent=MS.gene026939 |
| chr6.3 | exon | 3202116 | 3202158 | 3202116 | ID=MS.gene026939.t1.exon1;Parent=MS.gene026939.t1 |
| chr6.3 | CDS | 3202116 | 3202158 | 3202116 | ID=cds.MS.gene026939.t1;Parent=MS.gene026939.t1 |
| chr6.3 | exon | 3201828 | 3201864 | 3201828 | ID=MS.gene026939.t1.exon2;Parent=MS.gene026939.t1 |
| chr6.3 | CDS | 3201828 | 3201864 | 3201828 | ID=cds.MS.gene026939.t1;Parent=MS.gene026939.t1 |
| chr6.3 | exon | 3200901 | 3201117 | 3200901 | ID=MS.gene026939.t1.exon3;Parent=MS.gene026939.t1 |
| chr6.3 | CDS | 3200901 | 3201117 | 3200901 | ID=cds.MS.gene026939.t1;Parent=MS.gene026939.t1 |
| chr6.3 | exon | 3200389 | 3200550 | 3200389 | ID=MS.gene026939.t1.exon4;Parent=MS.gene026939.t1 |
| chr6.3 | CDS | 3200389 | 3200550 | 3200389 | ID=cds.MS.gene026939.t1;Parent=MS.gene026939.t1 |
| chr6.3 | exon | 3200164 | 3200286 | 3200164 | ID=MS.gene026939.t1.exon5;Parent=MS.gene026939.t1 |
| chr6.3 | CDS | 3200164 | 3200286 | 3200164 | ID=cds.MS.gene026939.t1;Parent=MS.gene026939.t1 |
| chr6.3 | exon | 3199953 | 3200051 | 3199953 | ID=MS.gene026939.t1.exon6;Parent=MS.gene026939.t1 |
| chr6.3 | CDS | 3199953 | 3200051 | 3199953 | ID=cds.MS.gene026939.t1;Parent=MS.gene026939.t1 |
| Gene Sequence |
| Protein sequence |
