AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028653

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028653.t1 MTR_2g095800 95.890 292 12 0 1 292 18 309 0.0 592
MS.gene028653.t1 MTR_4g057450 77.816 293 63 2 1 292 13 304 7.69e-172 478
MS.gene028653.t1 MTR_1g063020 67.474 289 92 2 4 292 8 294 4.26e-146 412
MS.gene028653.t1 MTR_7g102260 67.010 291 94 2 3 292 2 291 1.87e-145 410
MS.gene028653.t1 MTR_1g033420 41.137 299 155 7 1 292 7 291 2.62e-69 218
MS.gene028653.t1 MTR_8g064180 40.066 302 164 8 5 292 12 310 2.29e-64 204
MS.gene028653.t1 MTR_6g088320 39.179 268 143 7 36 292 25 283 3.36e-61 196
MS.gene028653.t1 MTR_4g126920 39.850 266 143 6 36 292 24 281 3.24e-59 191
MS.gene028653.t1 MTR_4g045853 36.422 313 153 8 1 292 1 288 6.94e-59 190
MS.gene028653.t1 MTR_5g029100 37.132 272 157 5 32 292 37 305 1.12e-58 191
MS.gene028653.t1 MTR_3g089540 41.418 268 132 8 36 292 29 282 1.49e-58 189
MS.gene028653.t1 MTR_5g091730 39.326 267 137 8 36 292 27 278 7.71e-58 187
MS.gene028653.t1 MTR_4g128410 37.500 296 159 8 5 292 3 280 8.45e-58 187
MS.gene028653.t1 MTR_8g090100 37.943 282 148 7 27 292 11 281 1.26e-57 187
MS.gene028653.t1 MTR_1g105495 36.486 296 170 7 8 292 6 294 9.20e-57 185
MS.gene028653.t1 MTR_7g084770 36.552 290 164 7 13 292 8 287 1.73e-56 184
MS.gene028653.t1 MTR_2g089140 36.364 275 153 5 32 292 20 286 3.67e-56 183
MS.gene028653.t1 MTR_7g093530 37.838 296 157 7 5 292 3 279 4.24e-56 182
MS.gene028653.t1 MTR_3g084630 38.971 272 146 7 29 292 18 277 1.30e-55 181
MS.gene028653.t1 MTR_3g084620 38.971 272 146 7 29 292 18 277 1.31e-55 181
MS.gene028653.t1 MTR_7g084750 36.364 297 168 9 5 292 3 287 2.04e-55 181
MS.gene028653.t1 MTR_5g029100 38.983 236 132 4 66 292 42 274 5.76e-55 181
MS.gene028653.t1 MTR_7g084760 37.687 268 147 7 35 292 30 287 8.07e-55 179
MS.gene028653.t1 MTR_8g013055 39.552 268 141 7 35 292 29 285 1.17e-54 179
MS.gene028653.t1 MTR_4g128570 39.924 263 132 8 36 292 30 272 1.37e-54 178
MS.gene028653.t1 MTR_8g081040 40.074 272 144 7 29 292 21 281 1.49e-54 179
MS.gene028653.t1 MTR_2g038860 38.519 270 145 6 36 292 25 286 7.20e-54 177
MS.gene028653.t1 MTR_2g038705 38.519 270 145 6 36 292 25 286 7.20e-54 177
MS.gene028653.t1 MTR_4g097640 35.452 299 157 11 7 292 12 287 8.22e-54 177
MS.gene028653.t1 MTR_4g097670 35.452 299 157 11 7 292 12 287 8.22e-54 177
MS.gene028653.t1 MTR_4g128580 38.662 269 145 6 36 292 25 285 1.75e-53 176
MS.gene028653.t1 MTR_8g102910 37.079 267 150 6 36 292 21 279 2.28e-53 176
MS.gene028653.t1 MTR_4g097700 37.313 268 146 9 36 292 68 324 5.02e-53 176
MS.gene028653.t1 MTR_6g033085 36.940 268 149 8 35 292 30 287 6.69e-53 174
MS.gene028653.t1 MTR_1g105900 35.766 274 158 8 29 292 26 291 6.01e-52 172
MS.gene028653.t1 MTR_6g033055 36.194 268 151 8 35 292 30 287 2.33e-51 171
MS.gene028653.t1 MTR_4g128400 37.891 256 143 6 45 292 36 283 3.29e-51 170
MS.gene028653.t1 MTR_7g056090 36.395 294 153 11 6 292 15 281 5.54e-50 167
MS.gene028653.t1 MTR_8g102220 37.500 272 138 9 29 292 19 266 4.66e-49 164
MS.gene028653.t1 MTR_2g089140 37.991 229 120 5 78 292 3 223 2.64e-48 160
MS.gene028653.t1 MTR_4g128590 36.531 271 133 9 36 292 30 275 1.46e-47 160
MS.gene028653.t1 MTR_2g049130 33.465 254 150 8 34 279 26 268 3.94e-44 152
MS.gene028653.t1 MTR_2g049030 33.333 270 153 12 32 292 25 276 3.76e-42 146
MS.gene028653.t1 MTR_8g032640 33.333 180 107 5 56 233 32 200 4.18e-18 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028653.t1 AT2G36870 66.327 294 96 2 1 292 5 297 7.38e-144 406
MS.gene028653.t1 AT3G44990 64.384 292 99 2 5 292 3 293 4.89e-138 392
MS.gene028653.t1 AT2G36870 66.092 174 57 1 1 172 5 178 3.81e-79 238
MS.gene028653.t1 AT1G14720 39.927 273 154 4 27 292 21 290 8.24e-69 217
MS.gene028653.t1 AT1G32170 40.074 272 151 4 30 292 25 293 2.30e-65 208
MS.gene028653.t1 AT2G01850 40.977 266 143 5 36 292 30 290 1.03e-64 206
MS.gene028653.t1 AT1G10550 35.971 278 161 3 29 292 35 309 1.71e-62 200
MS.gene028653.t1 AT4G18990 38.652 282 148 5 32 292 35 312 5.98e-62 200
MS.gene028653.t1 AT3G25050 37.736 265 150 4 35 292 33 289 2.30e-61 196
MS.gene028653.t1 AT3G23730 40.892 269 139 8 36 292 26 286 2.74e-60 194
MS.gene028653.t1 AT4G14130 41.791 268 135 8 36 292 27 284 7.69e-60 192
MS.gene028653.t1 AT1G11545 37.908 306 156 10 1 292 14 299 8.79e-60 193
MS.gene028653.t1 AT4G03210 35.644 303 157 7 4 292 6 284 1.26e-59 192
MS.gene028653.t1 AT5G57550 40.784 255 135 7 36 284 29 273 2.18e-59 191
MS.gene028653.t1 AT5G57560 39.259 270 145 8 34 292 20 281 7.75e-58 187
MS.gene028653.t1 AT4G25810 38.538 301 146 11 4 292 10 283 1.04e-57 187
MS.gene028653.t1 AT5G57530 40.809 272 139 9 32 292 22 282 8.53e-57 184
MS.gene028653.t1 AT4G13090 39.925 268 144 6 34 292 29 288 1.17e-56 184
MS.gene028653.t1 AT4G37800 36.149 296 164 7 6 292 10 289 4.78e-55 180
MS.gene028653.t1 AT4G13080 38.577 267 147 8 33 292 35 291 8.93e-55 179
MS.gene028653.t1 AT4G30270 37.984 258 135 7 32 284 19 256 1.67e-54 178
MS.gene028653.t1 AT5G57540 41.045 268 136 9 36 292 25 281 1.75e-54 178
MS.gene028653.t1 AT5G13870 35.811 296 166 9 6 292 7 287 1.77e-54 179
MS.gene028653.t1 AT5G13870 35.811 296 166 9 6 292 7 287 1.77e-54 179
MS.gene028653.t1 AT5G13870 35.811 296 166 9 6 292 7 287 1.77e-54 179
MS.gene028653.t1 AT5G65730 38.258 264 149 6 36 292 34 290 2.46e-54 178
MS.gene028653.t1 AT5G48070 38.603 272 146 10 30 292 22 281 6.77e-54 177
MS.gene028653.t1 AT2G06850 36.861 274 155 7 28 292 26 290 3.62e-53 176
MS.gene028653.t1 AT4G28850 35.075 268 153 8 37 292 29 287 2.53e-52 173
MS.gene028653.t1 AT1G65310 40.000 265 140 8 36 292 28 281 2.59e-52 173
MS.gene028653.t1 AT1G65310 40.000 265 140 8 36 292 50 303 4.87e-52 173
MS.gene028653.t1 AT4G03210 38.333 240 120 6 67 292 31 256 9.00e-52 171
MS.gene028653.t1 AT2G18800 36.462 277 147 9 37 292 28 296 9.42e-52 172
MS.gene028653.t1 AT4G25820 39.852 271 141 9 33 292 26 285 2.08e-51 171
MS.gene028653.t1 AT4G30290 40.693 231 123 6 66 292 56 276 2.79e-51 170
MS.gene028653.t1 AT2G14620 34.228 298 167 9 5 292 16 294 2.18e-50 168
MS.gene028653.t1 AT4G30280 39.216 255 139 5 36 284 28 272 4.29e-50 167
MS.gene028653.t1 AT2G06850 38.723 235 128 6 65 292 5 230 8.24e-50 165
MS.gene028653.t1 AT4G18990 39.631 217 108 4 95 292 26 238 1.92e-48 163
MS.gene028653.t1 AT2G14620 36.596 235 133 7 66 292 18 244 1.60e-45 154
MS.gene028653.t1 AT2G14620 37.220 223 124 7 78 292 19 233 3.64e-43 148
MS.gene028653.t1 AT3G48580 33.206 262 151 8 35 292 32 273 2.22e-40 142
MS.gene028653.t1 AT3G48580 34.199 231 129 7 65 292 4 214 3.06e-37 132
MS.gene028653.t1 AT3G48580 29.389 262 141 9 35 292 32 253 7.50e-25 100

Find 73 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTACAAATCTGGATATTT+TGG 0.149428 2.1:-7922952 MS.gene028653:CDS
CATAGACCAAGTAATTATTT+TGG 0.207651 2.1:+7921308 None:intergenic
TTCCTAGGATACCTCCTTAT+TGG 0.217615 2.1:+7921580 None:intergenic
ATCAAGAATTTAGAAATCTA+TGG 0.228439 2.1:-7923476 MS.gene028653:CDS
GAGAGATGAGATTTCATCTT+TGG 0.246832 2.1:-7922642 MS.gene028653:CDS
TTCACAACTATGCCATTCTA+TGG 0.276482 2.1:-7922600 MS.gene028653:CDS
CGAACTAAACCTTAGCATTC+TGG 0.321947 2.1:+7921247 None:intergenic
AGTGGAGATGGGAAGATCAT+AGG 0.350619 2.1:-7922667 MS.gene028653:CDS
TATACTTACCAACCCTTCAT+TGG 0.351915 2.1:-7921460 MS.gene028653:CDS
GTAAGTGCATGGTCTCTCTT+AGG 0.376321 2.1:+7921271 None:intergenic
GCAATACATATGGCTTATCT+TGG 0.380400 2.1:+7922713 None:intergenic
TCATATCACTCTTACAAATC+TGG 0.381593 2.1:-7922961 MS.gene028653:CDS
ATGATTTGTATTAGTAATGC+TGG 0.382697 2.1:-7923555 MS.gene028653:CDS
TAGTGGATGATGTTCCAATA+AGG 0.386035 2.1:-7921594 MS.gene028653:CDS
GCTCAGCTTGCCGCCATAGC+CGG 0.389428 2.1:+7921360 None:intergenic
CAGACAAATGTGTACATTAG+AGG 0.390267 2.1:-7922691 MS.gene028653:CDS
ACATTTGTCTGCAATACATA+TGG 0.397108 2.1:+7922703 None:intergenic
CTCAGCTTGCCGCCATAGCC+GGG 0.408183 2.1:+7921361 None:intergenic
ACCATGAATCATTATCAATC+TGG 0.433994 2.1:-7923431 MS.gene028653:CDS
GCCAGATTGATAATGATTCA+TGG 0.436574 2.1:+7923430 None:intergenic
ATACTTACCAACCCTTCATT+GGG 0.448591 2.1:-7921459 MS.gene028653:CDS
CTCACTAGGTTTCCATAGAA+TGG 0.448681 2.1:+7922588 None:intergenic
TGATTTGTATTAGTAATGCT+GGG 0.449518 2.1:-7923554 MS.gene028653:CDS
TCTGTCTCACCTCCCGGCTA+TGG 0.450760 2.1:-7921373 MS.gene028653:CDS
TCAAGACCAATGTATGTGTA+TGG 0.458346 2.1:-7921538 MS.gene028653:CDS
ACATTAGAGGAAGTGGAGAT+GGG 0.459120 2.1:-7922678 MS.gene028653:CDS
AGCAAAATGTTGCAATGCAA+TGG 0.460888 2.1:-7921333 MS.gene028653:CDS
TACACATACATTGGTCTTGA+AGG 0.461246 2.1:+7921541 None:intergenic
TCTGCATGGGCTACAGAGAA+TGG 0.467528 2.1:-7921499 MS.gene028653:CDS
TCAAGAATTTAGAAATCTAT+GGG 0.469409 2.1:-7923475 MS.gene028653:CDS
TACATTAGAGGAAGTGGAGA+TGG 0.475103 2.1:-7922679 MS.gene028653:CDS
AATGTTGCATCACTCTTCCT+AGG 0.480500 2.1:+7921565 None:intergenic
AATGTGTACATTAGAGGAAG+TGG 0.491430 2.1:-7922685 MS.gene028653:CDS
AGGCGGACGGCATGAGGAGG+TGG 0.495521 2.1:+7921396 None:intergenic
GAAATAGACATTGAGTTCCT+TGG 0.499774 2.1:-7922742 MS.gene028653:CDS
ATCTGGCTTGACTCTACCTC+AGG 0.501094 2.1:-7923414 MS.gene028653:intron
ACTCAATGTCTATTTCATCA+TGG 0.503835 2.1:+7922749 None:intergenic
GCAAAATGTTGCAATGCAAT+GGG 0.506732 2.1:-7921332 MS.gene028653:CDS
CAATACATATGGCTTATCTT+GGG 0.512542 2.1:+7922714 None:intergenic
TTCCAATAAGGAGGTATCCT+AGG 0.523994 2.1:-7921582 MS.gene028653:CDS
CCGCCTTCTGTCTCACCTCC+CGG 0.526126 2.1:-7921379 MS.gene028653:CDS
TGTATCTCCCAATGAAGGGT+TGG 0.527457 2.1:+7921452 None:intergenic
CAATCTGGGATGCATCTGCA+TGG 0.536057 2.1:-7921513 MS.gene028653:CDS
ATGGGTCCAAAATAATTACT+TGG 0.539014 2.1:-7921314 MS.gene028653:CDS
TGTATGTGTATGGATCAATC+TGG 0.542899 2.1:-7921528 MS.gene028653:CDS
CTTCAACCAGGTTATACTGC+AGG 0.542998 2.1:-7922916 MS.gene028653:CDS
GAGAAGAAAAGAGAGAAGAG+AGG 0.561549 2.1:+7923582 None:intergenic
ACACATACATTGGTCTTGAA+GGG 0.561915 2.1:+7921542 None:intergenic
AAATATTACATGATCTCACT+AGG 0.565995 2.1:+7922574 None:intergenic
GCACTTACTCCAGAATGCTA+AGG 0.580492 2.1:-7921256 None:intergenic
GTCTCACCTCCCGGCTATGG+CGG 0.581515 2.1:-7921370 MS.gene028653:CDS
GACAGAAGGCGGACGGCATG+AGG 0.589748 2.1:+7921390 None:intergenic
CTAGGATAGTACCCTGGTGA+AGG 0.596166 2.1:+7923525 None:intergenic
AGAAGGCGGACGGCATGAGG+AGG 0.599752 2.1:+7921393 None:intergenic
ATTGATCCATACACATACAT+TGG 0.600084 2.1:+7921532 None:intergenic
TTGACTCCTGCAGTATAACC+TGG 0.602424 2.1:+7922910 None:intergenic
TAGTTGTGAAAATCTTGTGT+TGG 0.603177 2.1:+7922613 None:intergenic
TAGCCGGGAGGTGAGACAGA+AGG 0.606757 2.1:+7921376 None:intergenic
AATCTGGGATGCATCTGCAT+GGG 0.616394 2.1:-7921512 MS.gene028653:CDS
GCATGAGGAGGTGGAATCAG+TGG 0.618556 2.1:+7921405 None:intergenic
AGCATTCTGGAGTAAGTGCA+TGG 0.624643 2.1:+7921260 None:intergenic
AGCTTGCCGCCATAGCCGGG+AGG 0.627847 2.1:+7921364 None:intergenic
GATTTGTATTAGTAATGCTG+GGG 0.636926 2.1:-7923553 MS.gene028653:CDS
GTATGTGTATGGATCAATCT+GGG 0.642889 2.1:-7921527 MS.gene028653:CDS
TGGATGATGTTCCAATAAGG+AGG 0.647078 2.1:-7921591 MS.gene028653:CDS
GAGGTGAGACAGAAGGCGGA+CGG 0.648616 2.1:+7921383 None:intergenic
ACTGCGGTTAAGCTTCAACC+AGG 0.650106 2.1:-7922928 MS.gene028653:CDS
GCTTATCTTGGGTAGTACCA+AGG 0.651953 2.1:+7922725 None:intergenic
CCGGGAGGTGAGACAGAAGG+CGG 0.677362 2.1:+7921379 None:intergenic
TTAGAACTAGGATAGTACCC+TGG 0.696164 2.1:+7923519 None:intergenic
CAAGAATTTAGAAATCTATG+GGG 0.710687 2.1:-7923474 MS.gene028653:CDS
TCAAACATCGAAGATCACAA+AGG 0.711833 2.1:-7922775 MS.gene028653:CDS
ATTTGTATTAGTAATGCTGG+GGG 0.723446 2.1:-7923552 MS.gene028653:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAGTCATATTTATA+TGG + chr2.1:7922898-7922917 None:intergenic 10.0%
!! AAACATTAATTCAAATTATA+AGG + chr2.1:7921985-7922004 None:intergenic 10.0%
!! AAATAAAGTCATATTTATAT+GGG + chr2.1:7922897-7922916 None:intergenic 10.0%
!! ATGAGTATATATATTATAAA+AGG + chr2.1:7923133-7923152 None:intergenic 10.0%
!! GATATTAATTTCATTTAATT+TGG - chr2.1:7922036-7922055 MS.gene028653:intron 10.0%
!! TGAGTATATATATTATAAAA+GGG + chr2.1:7923132-7923151 None:intergenic 10.0%
!!! AATCTATTATTATTTTAGTA+TGG - chr2.1:7921812-7921831 MS.gene028653:intron 10.0%
!!! ATGTTTTAAAATAGTAAAAT+TGG + chr2.1:7922527-7922546 None:intergenic 10.0%
!!! ATTTTTAATAAAAACTGTTT+TGG + chr2.1:7922438-7922457 None:intergenic 10.0%
!! AATAAATAAAGAATCACATT+TGG + chr2.1:7921651-7921670 None:intergenic 15.0%
!! TTTCTCAAATTATATTAGAT+AGG + chr2.1:7921746-7921765 None:intergenic 15.0%
!!! AAATATGACTTTATTTTGTT+TGG - chr2.1:7922901-7922920 MS.gene028653:CDS 15.0%
!!! AATATGACTTTATTTTGTTT+GGG - chr2.1:7922902-7922921 MS.gene028653:CDS 15.0%
!!! ATAAAAATGATCTTTTTGAT+AGG + chr2.1:7923091-7923110 None:intergenic 15.0%
!!! TATAGAATATATTATTTCTG+AGG + chr2.1:7922696-7922715 None:intergenic 15.0%
!!! TTATATATACAGATTTTTAG+TGG - chr2.1:7923235-7923254 MS.gene028653:intron 15.0%
!!! TTGATCTTTTTATTTGTATT+CGG + chr2.1:7922370-7922389 None:intergenic 15.0%
!! ATCAAGAATTTAGAAATCTA+TGG - chr2.1:7921370-7921389 MS.gene028653:CDS 20.0%
!! TCAAGAATTTAGAAATCTAT+GGG - chr2.1:7921371-7921390 MS.gene028653:CDS 20.0%
!! TCAATACAAATTTATATGTG+AGG - chr2.1:7921955-7921974 MS.gene028653:intron 20.0%
!! TCAATATTCTATGTTTAGTA+AGG - chr2.1:7922925-7922944 MS.gene028653:CDS 20.0%
!!! AAGACATAGTTTCTTTTTTT+GGG - chr2.1:7922833-7922852 MS.gene028653:intron 20.0%
!!! GTTAAATATTTTATTCCAAG+AGG - chr2.1:7923001-7923020 MS.gene028653:intron 20.0%
! AAATATTACATGATCTCACT+AGG + chr2.1:7922275-7922294 None:intergenic 25.0%
! ATCTAAACTAAAATCTCAAG+CGG - chr2.1:7921682-7921701 MS.gene028653:intron 25.0%
! ATTTCTCTATACCTATTAGT+AGG + chr2.1:7923050-7923069 None:intergenic 25.0%
! CAAGAATTTAGAAATCTATG+GGG - chr2.1:7921372-7921391 MS.gene028653:CDS 25.0%
! TACAAAAACTTCAAACTACA+AGG - chr2.1:7923413-7923432 MS.gene028653:intron 25.0%
! TTTCTCTATACCTATTAGTA+GGG + chr2.1:7923049-7923068 None:intergenic 25.0%
!! AAAAGTAGCAATTTTTGCAT+TGG - chr2.1:7922765-7922784 MS.gene028653:CDS 25.0%
!! ATGATTTGTATTAGTAATGC+TGG - chr2.1:7921291-7921310 MS.gene028653:CDS 25.0%
!! CATAGACCAAGTAATTATTT+TGG + chr2.1:7923541-7923560 None:intergenic 25.0%
!! TCTTACAAATCTGGATATTT+TGG - chr2.1:7921894-7921913 MS.gene028653:intron 25.0%
!! TGATTTGTATTAGTAATGCT+GGG - chr2.1:7921292-7921311 MS.gene028653:CDS 25.0%
!! TTACTAATTTTCAGTTCGAT+TGG - chr2.1:7922611-7922630 MS.gene028653:CDS 25.0%
!! TTTTTGCATTGGAAATTGTA+CGG - chr2.1:7922776-7922795 MS.gene028653:CDS 25.0%
!!! ATAGTGCTTATTTTAGAACT+AGG + chr2.1:7921342-7921361 None:intergenic 25.0%
!!! CAAGACATAGTTTCTTTTTT+TGG - chr2.1:7922832-7922851 MS.gene028653:intron 25.0%
!!! TATATTATTTCTGAGGATCT+TGG + chr2.1:7922689-7922708 None:intergenic 25.0%
!!! TTTTATTTAAAAGCCACATG+TGG - chr2.1:7923105-7923124 MS.gene028653:intron 25.0%
ACATTTGTCTGCAATACATA+TGG + chr2.1:7922146-7922165 None:intergenic 30.0%
ACCATGAATCATTATCAATC+TGG - chr2.1:7921415-7921434 MS.gene028653:CDS 30.0%
ACTCAATGTCTATTTCATCA+TGG + chr2.1:7922100-7922119 None:intergenic 30.0%
ATGGGTCCAAAATAATTACT+TGG - chr2.1:7923532-7923551 MS.gene028653:CDS 30.0%
ATTGATCCATACACATACAT+TGG + chr2.1:7923317-7923336 None:intergenic 30.0%
ATTTGTATTAGTAATGCTGG+GGG - chr2.1:7921294-7921313 MS.gene028653:CDS 30.0%
CAAATTGAACTGTGATATGT+TGG + chr2.1:7922331-7922350 None:intergenic 30.0%
CAATACATATGGCTTATCTT+GGG + chr2.1:7922135-7922154 None:intergenic 30.0%
CTAATAGGTATAGAGAAATG+AGG - chr2.1:7923051-7923070 MS.gene028653:intron 30.0%
GATTTGTATTAGTAATGCTG+GGG - chr2.1:7921293-7921312 MS.gene028653:CDS 30.0%
GCAAAAGTAAACAAAGAACT+AGG - chr2.1:7922569-7922588 MS.gene028653:intron 30.0%
TAGTTGTGAAAATCTTGTGT+TGG + chr2.1:7922236-7922255 None:intergenic 30.0%
TCATATCACTCTTACAAATC+TGG - chr2.1:7921885-7921904 MS.gene028653:intron 30.0%
TTATGCATGACACTTCATTT+AGG + chr2.1:7921497-7921516 None:intergenic 30.0%
! ATTTTCCATACCCTACTAAT+AGG - chr2.1:7923036-7923055 MS.gene028653:intron 30.0%
! CAGTTCAATTTGTTCAACTA+CGG - chr2.1:7922339-7922358 MS.gene028653:intron 30.0%
! CATTTGATTTCATATACCTG+AGG + chr2.1:7921451-7921470 None:intergenic 30.0%
! GTGATTGATTGATAGCTATA+TGG + chr2.1:7922975-7922994 None:intergenic 30.0%
! TTGATAGCTATATGGCTAAA+TGG + chr2.1:7922967-7922986 None:intergenic 30.0%
! TTTTTGTATCTCCCAATGAA+GGG + chr2.1:7923401-7923420 None:intergenic 30.0%
AAAACTAGACTGAGTCTGAA+AGG + chr2.1:7922651-7922670 None:intergenic 35.0%
AAGCATTTCTTTGCAACACA+GGG - chr2.1:7921850-7921869 MS.gene028653:intron 35.0%
AATGTGTACATTAGAGGAAG+TGG - chr2.1:7922161-7922180 MS.gene028653:intron 35.0%
AATTAAACACTCTTGCCTCT+TGG + chr2.1:7923019-7923038 None:intergenic 35.0%
ACACTTCATTTAGGTGAACT+TGG + chr2.1:7921488-7921507 None:intergenic 35.0%
AGCAAAATGTTGCAATGCAA+TGG - chr2.1:7923513-7923532 MS.gene028653:CDS 35.0%
ATACTTACCAACCCTTCATT+GGG - chr2.1:7923387-7923406 MS.gene028653:intron 35.0%
ATGCTTAAACAATGCCCTTA+GGG + chr2.1:7922743-7922762 None:intergenic 35.0%
ATTATAAAAGGGACCACATG+TGG + chr2.1:7923121-7923140 None:intergenic 35.0%
CACTTCATTTAGGTGAACTT+GGG + chr2.1:7921487-7921506 None:intergenic 35.0%
CAGACAAATGTGTACATTAG+AGG - chr2.1:7922155-7922174 MS.gene028653:intron 35.0%
CTATACCTATTAGTAGGGTA+TGG + chr2.1:7923044-7923063 None:intergenic 35.0%
GAAATAGACATTGAGTTCCT+TGG - chr2.1:7922104-7922123 MS.gene028653:intron 35.0%
GAGAGATGAGATTTCATCTT+TGG - chr2.1:7922204-7922223 MS.gene028653:intron 35.0%
GCAAAATGTTGCAATGCAAT+GGG - chr2.1:7923514-7923533 MS.gene028653:CDS 35.0%
GCAATACATATGGCTTATCT+TGG + chr2.1:7922136-7922155 None:intergenic 35.0%
GCTATCAATCAATCACTGTT+TGG - chr2.1:7922979-7922998 MS.gene028653:intron 35.0%
GTATGTGTATGGATCAATCT+GGG - chr2.1:7923319-7923338 MS.gene028653:intron 35.0%
TAAGCATTTCTTTGCAACAC+AGG - chr2.1:7921849-7921868 MS.gene028653:intron 35.0%
TATACTTACCAACCCTTCAT+TGG - chr2.1:7923386-7923405 MS.gene028653:intron 35.0%
TCAAACATCGAAGATCACAA+AGG - chr2.1:7922071-7922090 MS.gene028653:intron 35.0%
TCAAGACCAATGTATGTGTA+TGG - chr2.1:7923308-7923327 MS.gene028653:intron 35.0%
TGTATGTGTATGGATCAATC+TGG - chr2.1:7923318-7923337 MS.gene028653:intron 35.0%
TTCACAACTATGCCATTCTA+TGG - chr2.1:7922246-7922265 MS.gene028653:intron 35.0%
TTCCTTAAACAATGCCCTTA+GGG - chr2.1:7922856-7922875 MS.gene028653:intron 35.0%
! GTTTTTGTATCTCCCAATGA+AGG + chr2.1:7923402-7923421 None:intergenic 35.0%
! TAGTGGATGATGTTCCAATA+AGG - chr2.1:7923252-7923271 MS.gene028653:intron 35.0%
!! ACACATACATTGGTCTTGAA+GGG + chr2.1:7923307-7923326 None:intergenic 35.0%
!! GCCAGATTGATAATGATTCA+TGG + chr2.1:7921419-7921438 None:intergenic 35.0%
!! TACACATACATTGGTCTTGA+AGG + chr2.1:7923308-7923327 None:intergenic 35.0%
!!! ATCTGGATATTTTGGTACTG+CGG - chr2.1:7921902-7921921 MS.gene028653:intron 35.0%
AAATGCTAACAAGTGCCCTA+AGG - chr2.1:7922725-7922744 MS.gene028653:CDS 40.0%
AATGCTAACAAGTGCCCTAA+GGG - chr2.1:7922726-7922745 MS.gene028653:CDS 40.0%
AATGTTGCATCACTCTTCCT+AGG + chr2.1:7923284-7923303 None:intergenic 40.0%
ACAAACCAGTTAAACCAACC+TGG - chr2.1:7922458-7922477 MS.gene028653:intron 40.0%
ACATTAGAGGAAGTGGAGAT+GGG - chr2.1:7922168-7922187 MS.gene028653:intron 40.0%
CATCAGGCTACATTAGAACT+AGG - chr2.1:7922494-7922513 MS.gene028653:intron 40.0%
CTCACTAGGTTTCCATAGAA+TGG + chr2.1:7922261-7922280 None:intergenic 40.0%
GAGAAGAAAAGAGAGAAGAG+AGG + chr2.1:7921267-7921286 None:intergenic 40.0%
GATGCTTAAACAATGCCCTT+AGG + chr2.1:7922744-7922763 None:intergenic 40.0%
GTTCCTTAAACAATGCCCTT+AGG - chr2.1:7922855-7922874 MS.gene028653:intron 40.0%
TAAACCAACCTGGTTGAGAA+TGG - chr2.1:7922468-7922487 MS.gene028653:intron 40.0%
TACATTAGAGGAAGTGGAGA+TGG - chr2.1:7922167-7922186 MS.gene028653:intron 40.0%
TAGCGTGCTGAATTGCTTTA+TGG - chr2.1:7923211-7923230 MS.gene028653:intron 40.0%
TGGATGATGTTCCAATAAGG+AGG - chr2.1:7923255-7923274 MS.gene028653:intron 40.0%
TTAGAACTAGGATAGTACCC+TGG + chr2.1:7921330-7921349 None:intergenic 40.0%
TTCCTAGGATACCTCCTTAT+TGG + chr2.1:7923269-7923288 None:intergenic 40.0%
! GCATTGCAACATTTTGCTGA+CGG + chr2.1:7923511-7923530 None:intergenic 40.0%
!! CTAGTTCTAATGTAGCCTGA+TGG + chr2.1:7922496-7922515 None:intergenic 40.0%
!! TTCCAATAAGGAGGTATCCT+AGG - chr2.1:7923264-7923283 MS.gene028653:intron 40.0%
AGTGGAGATGGGAAGATCAT+AGG - chr2.1:7922179-7922198 MS.gene028653:intron 45.0%
CTGAGTCTGAAAGGATCGAT+CGG + chr2.1:7922642-7922661 None:intergenic 45.0%
CTTCAACCAGGTTATACTGC+AGG - chr2.1:7921930-7921949 MS.gene028653:intron 45.0%
CTTGCTAACAAGTGCCCTAA+GGG + chr2.1:7922873-7922892 None:intergenic 45.0%
GCTTATCTTGGGTAGTACCA+AGG + chr2.1:7922124-7922143 None:intergenic 45.0%
GTAAGTGCATGGTCTCTCTT+AGG + chr2.1:7923578-7923597 None:intergenic 45.0%
TCTTGCTAACAAGTGCCCTA+AGG + chr2.1:7922874-7922893 None:intergenic 45.0%
TGATGGAACCATTCTCAACC+AGG + chr2.1:7922479-7922498 None:intergenic 45.0%
TGGTTGAGAATGGTTCCATC+AGG - chr2.1:7922478-7922497 MS.gene028653:intron 45.0%
TGTATCTCCCAATGAAGGGT+TGG + chr2.1:7923397-7923416 None:intergenic 45.0%
TTGACTCCTGCAGTATAACC+TGG + chr2.1:7921939-7921958 None:intergenic 45.0%
TTTCTTTGCAACACAGGGAG+TGG - chr2.1:7921855-7921874 MS.gene028653:intron 45.0%
! AATCTGGGATGCATCTGCAT+GGG - chr2.1:7923334-7923353 MS.gene028653:intron 45.0%
!! AGCATTCTGGAGTAAGTGCA+TGG + chr2.1:7923589-7923608 None:intergenic 45.0%
!! CTCAACCAGGTTGGTTTAAC+TGG + chr2.1:7922466-7922485 None:intergenic 45.0%
!! TGCCCTAAGGGCATTGTTTA+AGG + chr2.1:7922757-7922738 None:intergenic 45.0%
!! ATAATATATTCTATATAAAT+AGG - chr2.1:7922701-7922720 MS.gene028653:CDS 5.0%
!!! ATATTAATTTCATTTAATTT+GGG - chr2.1:7922037-7922056 MS.gene028653:intron 5.0%
ACTGCGGTTAAGCTTCAACC+AGG - chr2.1:7921918-7921937 MS.gene028653:intron 50.0%
CTAGGATAGTACCCTGGTGA+AGG + chr2.1:7921324-7921343 None:intergenic 50.0%
GGAACCATTCTCAACCAGGT+TGG + chr2.1:7922475-7922494 None:intergenic 50.0%
! ATCTGGCTTGACTCTACCTC+AGG - chr2.1:7921432-7921451 MS.gene028653:CDS 50.0%
! CAATCTGGGATGCATCTGCA+TGG - chr2.1:7923333-7923352 MS.gene028653:intron 50.0%
! TCTGCATGGGCTACAGAGAA+TGG - chr2.1:7923347-7923366 MS.gene028653:intron 50.0%
GCATGAGGAGGTGGAATCAG+TGG + chr2.1:7923444-7923463 None:intergenic 55.0%
GAGGTGAGACAGAAGGCGGA+CGG + chr2.1:7923466-7923485 None:intergenic 60.0%
TAGCCGGGAGGTGAGACAGA+AGG + chr2.1:7923473-7923492 None:intergenic 60.0%
TCTGTCTCACCTCCCGGCTA+TGG - chr2.1:7923473-7923492 MS.gene028653:CDS 60.0%
AGAAGGCGGACGGCATGAGG+AGG + chr2.1:7923456-7923475 None:intergenic 65.0%
CCGCCTTCTGTCTCACCTCC+CGG - chr2.1:7923467-7923486 MS.gene028653:CDS 65.0%
CCGGGAGGTGAGACAGAAGG+CGG + chr2.1:7923470-7923489 None:intergenic 65.0%
CTCAGCTTGCCGCCATAGCC+GGG + chr2.1:7923488-7923507 None:intergenic 65.0%
GACAGAAGGCGGACGGCATG+AGG + chr2.1:7923459-7923478 None:intergenic 65.0%
GCTCAGCTTGCCGCCATAGC+CGG + chr2.1:7923489-7923508 None:intergenic 65.0%
GTCTCACCTCCCGGCTATGG+CGG - chr2.1:7923476-7923495 MS.gene028653:CDS 65.0%
! CTGGGGGTGCACCTTCACCA+GGG - chr2.1:7921310-7921329 MS.gene028653:CDS 65.0%
AGCTTGCCGCCATAGCCGGG+AGG + chr2.1:7923485-7923504 None:intergenic 70.0%
AGGCGGACGGCATGAGGAGG+TGG + chr2.1:7923453-7923472 None:intergenic 70.0%
! GCTGGGGGTGCACCTTCACC+AGG - chr2.1:7921309-7921328 MS.gene028653:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 7921258 7923610 7921258 ID=MS.gene028653
chr2.1 mRNA 7921258 7923610 7921258 ID=MS.gene028653.t1;Parent=MS.gene028653
chr2.1 exon 7923415 7923610 7923415 ID=MS.gene028653.t1.exon1;Parent=MS.gene028653.t1
chr2.1 CDS 7923415 7923610 7923415 ID=cds.MS.gene028653.t1;Parent=MS.gene028653.t1
chr2.1 exon 7922897 7922997 7922897 ID=MS.gene028653.t1.exon2;Parent=MS.gene028653.t1
chr2.1 CDS 7922897 7922997 7922897 ID=cds.MS.gene028653.t1;Parent=MS.gene028653.t1
chr2.1 exon 7922583 7922800 7922583 ID=MS.gene028653.t1.exon3;Parent=MS.gene028653.t1
chr2.1 CDS 7922583 7922800 7922583 ID=cds.MS.gene028653.t1;Parent=MS.gene028653.t1
chr2.1 exon 7921258 7921621 7921258 ID=MS.gene028653.t1.exon4;Parent=MS.gene028653.t1
chr2.1 CDS 7921258 7921621 7921258 ID=cds.MS.gene028653.t1;Parent=MS.gene028653.t1
Gene Sequence

>MS.gene028653

ATGGCTCCTCTCTTCTCTCTTTTCTTCTCATTCATGATTTGTATTAGTAATGCTGGGGGTGCACCTTCACCAGGGTACTATCCTAGTTCTAAAATAAGCACTATTAGCTTTGATCAAGAATTTAGAAATCTATGGGGAGCTCAGCATCAGAAACTAGACCATGAATCATTATCAATCTGGCTTGACTCTACCTCAGGTATATGAAATCAAATGTCTCAAATCATCTCCCAAGTTCACCTAAATGAAGTGTCATGCATAATCATTAACTCGAAAAATAACTCTTGAAATTTCAAGCATTTCATAATTTGTTGCATGTGTACATAAATTTTGTTACAATTTTAATTTATTTCATCTTTGTACTATATAATACTCTTCTCAATTTTAGATGAGCCAAATGTGATTCTTTATTTATTTATTATTTGTAATCTAAACTAAAATCTCAAGCGGTTAAAACTCTTGATGAAGTACTTTGTCTTACACGTGTTCCTATCTAATATAATTTGAGAAATTAGTCTCTGCGACTACGTACATAGTACATAAAAATATAATGCAAAAATCTATTATTATTTTAGTATGGATTCTTATTACTTCTAAGCATTTCTTTGCAACACAGGGAGTGGATTCAAGTCATATCACTCTTACAAATCTGGATATTTTGGTACTGCGGTTAAGCTTCAACCAGGTTATACTGCAGGAGTCAATACAAATTTATATGTGAGGATTACCTTATAATTTGAATTAATGTTTAAAATTGACTGTATATTACGTTTTTTGTGTTGATATTAATTTCATTTAATTTGGGAATTGTAGCTTTCAAACATCGAAGATCACAAAGGAAACCATGATGAAATAGACATTGAGTTCCTTGGTACTACCCAAGATAAGCCATATGTATTGCAGACAAATGTGTACATTAGAGGAAGTGGAGATGGGAAGATCATAGGAAGAGAGATGAGATTTCATCTTTGGTTCGATCCAACACAAGATTTTCACAACTATGCCATTCTATGGAAACCTAGTGAGATCATGTAATATTTTCATACACTATTCTACAATTTTTAAAATCTAGACCAACATATCACAGTTCAATTTGTTCAACTACGGTTAAACCGAATACAAATAAAAAGATCAAAAGTTTTTTTTTTTTTGACAAAAGATCAAAAGTATTTAAAAAGTACCAAAACAGTTTTTATTAAAAATACAAACCAGTTAAACCAACCTGGTTGAGAATGGTTCCATCAGGCTACATTAGAACTAGGATTAAATCCAATTTTACTATTTTAAAACATATTTGAGTTTTTATATTCTAAAGCAAAAGTAAACAAAGAACTAGGATTAATTCGATCAATGAAGTTACTAATTTTCAGTTCGATTGGTTGAACCGATCGATCCTTTCAGACTCAGTCTAGTTTTTAAAACATTGTTATACCAAGATCCTCAGAAATAATATATTCTATATAAATAGGAAAATGCTAACAAGTGCCCTAAGGGCATTGTTTAAGCATCTAAAAGTAGCAATTTTTGCATTGGAAATTGTACGGTTATGACTTTAAAAAGTGTTTGACTTGTATTTTCAAGACATAGTTTCTTTTTTTGGGTTCCTTAAACAATGCCCTTAGGGCACTTGTTAGCAAGACCCATATAAATATGACTTTATTTTGTTTGGGTCAATATTCTATGTTTAGTAAGGATCAACAAGTCAACAACCATTTAGCCATATAGCTATCAATCAATCACTGTTTGGTTAAATATTTTATTCCAAGAGGCAAGAGTGTTTAATTTTCCATACCCTACTAATAGGTATAGAGAAATGAGGTGCTAGAAAATATTCCTATCAAAAAGATCATTTTTATTTAAAAGCCACATGTGGTCCCTTTTATAATATATATACTCATTAACATTATAATGTCATGTTTATTAAAAAACAAAGCATATAGCTATTTTTTTTTTTGTTAGCGTGCTGAATTGCTTTATGGTTTATATATACAGATTTTTAGTGGATGATGTTCCAATAAGGAGGTATCCTAGGAAGAGTGATGCAACATTCCCTTCAAGACCAATGTATGTGTATGGATCAATCTGGGATGCATCTGCATGGGCTACAGAGAATGGAAAATACAAAGCAAATTATACTTACCAACCCTTCATTGGGAGATACAAAAACTTCAAACTACAAGGTTGTACCACTGATTCCACCTCCTCATGCCGTCCGCCTTCTGTCTCACCTCCCGGCTATGGCGGCAAGCTGAGCCGTCAGCAAAATGTTGCAATGCAATGGGTCCAAAATAATTACTTGGTCTATGATTATTGTCATGATCCTAAGAGAGACCATGCACTTACTCCAGAATGCTAA
Protein sequence

>MS.gene028653.t1

MAPLFSLFFSFMICISNAGGAPSPGYYPSSKISTISFDQEFRNLWGAQHQKLDHESLSIWLDSTSGSGFKSYHSYKSGYFGTAVKLQPGYTAGVNTNLYLSNIEDHKGNHDEIDIEFLGTTQDKPYVLQTNVYIRGSGDGKIIGREMRFHLWFDPTQDFHNYAILWKPSEIIFLVDDVPIRRYPRKSDATFPSRPMYVYGSIWDASAWATENGKYKANYTYQPFIGRYKNFKLQGCTTDSTSSCRPPSVSPPGYGGKLSRQQNVAMQWVQNNYLVYDYCHDPKRDHALTPEC