AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52292

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52292.t1 MTR_7g084770 98.635 293 4 0 1 293 1 293 0.0 608
MS.gene52292.t1 MTR_7g084760 97.270 293 8 0 1 293 1 293 0.0 601
MS.gene52292.t1 MTR_7g084750 85.666 293 42 0 1 293 1 293 0.0 546
MS.gene52292.t1 MTR_6g033055 81.911 293 53 0 1 293 1 293 0.0 519
MS.gene52292.t1 MTR_6g033085 83.275 287 47 1 8 293 7 293 0.0 514
MS.gene52292.t1 MTR_2g089140 50.515 291 123 4 7 289 11 288 9.30e-104 305
MS.gene52292.t1 MTR_4g097640 52.330 279 126 3 10 287 15 287 1.32e-103 304
MS.gene52292.t1 MTR_4g097670 52.330 279 126 3 10 287 15 287 1.32e-103 304
MS.gene52292.t1 MTR_3g084630 53.082 292 125 3 1 291 1 281 2.94e-103 303
MS.gene52292.t1 MTR_3g084620 52.740 292 126 3 1 291 1 281 4.70e-103 302
MS.gene52292.t1 MTR_4g128410 53.287 289 121 4 3 288 4 281 1.30e-102 301
MS.gene52292.t1 MTR_4g097700 54.864 257 114 2 32 287 69 324 1.60e-102 303
MS.gene52292.t1 MTR_8g081040 53.214 280 120 4 9 287 12 281 4.17e-101 297
MS.gene52292.t1 MTR_4g045853 49.658 292 126 4 4 287 10 288 9.19e-101 297
MS.gene52292.t1 MTR_7g093530 52.414 290 124 4 1 287 1 279 1.91e-98 291
MS.gene52292.t1 MTR_4g128580 55.303 264 106 3 32 287 26 285 3.93e-97 288
MS.gene52292.t1 MTR_8g102220 49.829 293 122 5 1 291 1 270 1.40e-96 286
MS.gene52292.t1 MTR_4g128570 54.864 257 100 3 32 287 31 272 3.35e-95 282
MS.gene52292.t1 MTR_1g105900 48.239 284 143 3 8 287 8 291 1.09e-94 281
MS.gene52292.t1 MTR_6g088320 48.864 264 129 4 28 287 22 283 1.35e-93 278
MS.gene52292.t1 MTR_4g126920 52.490 261 115 3 32 287 25 281 3.48e-93 277
MS.gene52292.t1 MTR_1g105495 48.276 290 146 2 2 287 5 294 9.69e-93 277
MS.gene52292.t1 MTR_2g038860 52.075 265 114 3 32 287 26 286 3.31e-91 273
MS.gene52292.t1 MTR_2g038705 52.075 265 114 3 32 287 26 286 3.31e-91 273
MS.gene52292.t1 MTR_8g102910 47.331 281 142 4 11 287 1 279 6.30e-91 271
MS.gene52292.t1 MTR_4g128400 46.599 294 139 5 1 287 1 283 2.11e-90 270
MS.gene52292.t1 MTR_2g089140 54.222 225 95 2 73 289 1 225 8.33e-89 264
MS.gene52292.t1 MTR_8g013055 48.263 259 133 1 29 287 28 285 7.88e-88 264
MS.gene52292.t1 MTR_4g128590 48.772 285 124 4 10 289 10 277 1.17e-85 258
MS.gene52292.t1 MTR_7g056090 45.714 280 142 6 10 288 12 282 5.78e-81 246
MS.gene52292.t1 MTR_5g091730 49.378 241 115 3 50 289 46 280 7.22e-81 246
MS.gene52292.t1 MTR_3g089540 47.177 248 118 3 51 293 49 288 4.48e-80 244
MS.gene52292.t1 MTR_2g049030 41.696 283 154 7 7 288 5 277 2.81e-69 216
MS.gene52292.t1 MTR_2g049130 42.545 275 149 7 8 277 1 271 2.49e-66 209
MS.gene52292.t1 MTR_4g057450 35.762 302 162 8 5 287 16 304 4.81e-60 193
MS.gene52292.t1 MTR_5g029100 37.546 269 156 5 30 288 40 306 8.91e-60 194
MS.gene52292.t1 MTR_8g064180 34.551 301 174 6 8 288 14 311 5.57e-59 191
MS.gene52292.t1 MTR_7g102260 35.197 304 161 8 5 287 3 291 3.58e-58 188
MS.gene52292.t1 MTR_1g063020 38.545 275 148 8 23 287 31 294 7.29e-58 187
MS.gene52292.t1 MTR_1g033420 38.321 274 158 5 24 290 25 294 3.75e-57 187
MS.gene52292.t1 MTR_2g095800 37.818 275 151 7 23 287 45 309 1.12e-56 185
MS.gene52292.t1 MTR_8g090100 36.431 269 154 6 30 287 19 281 2.93e-55 182
MS.gene52292.t1 MTR_5g029100 34.722 288 163 6 10 287 2 274 4.52e-54 178
MS.gene52292.t1 MTR_8g479340 35.484 186 59 3 103 287 10 135 1.16e-28 107
MS.gene52292.t1 MTR_8g032640 33.908 174 107 4 54 225 33 200 4.38e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52292.t1 AT5G13870 80.488 287 56 0 7 293 7 293 0.0 508
MS.gene52292.t1 AT5G13870 80.488 287 56 0 7 293 7 293 0.0 508
MS.gene52292.t1 AT5G13870 80.488 287 56 0 7 293 7 293 0.0 508
MS.gene52292.t1 AT2G06850 76.792 293 67 1 1 292 3 295 2.77e-177 491
MS.gene52292.t1 AT2G06850 80.519 231 45 0 62 292 5 235 2.12e-147 413
MS.gene52292.t1 AT3G23730 52.083 288 126 3 8 291 11 290 3.10e-106 311
MS.gene52292.t1 AT5G65730 51.590 283 133 3 7 288 12 291 6.10e-106 310
MS.gene52292.t1 AT4G14130 52.881 295 124 5 2 291 4 288 1.79e-103 304
MS.gene52292.t1 AT4G37800 50.704 284 133 3 5 287 12 289 2.69e-102 301
MS.gene52292.t1 AT4G03210 50.172 291 136 3 5 293 7 290 5.22e-102 300
MS.gene52292.t1 AT5G57550 50.173 289 137 3 1 288 1 283 1.72e-98 291
MS.gene52292.t1 AT5G57560 51.220 287 121 4 8 287 7 281 2.16e-97 288
MS.gene52292.t1 AT4G30270 54.475 257 101 3 32 287 24 265 4.74e-95 281
MS.gene52292.t1 AT1G11545 50.342 292 134 5 3 287 12 299 6.48e-95 283
MS.gene52292.t1 AT5G57530 53.516 256 111 4 39 290 34 285 2.88e-94 280
MS.gene52292.t1 AT4G25810 51.408 284 122 6 11 287 9 283 1.13e-93 279
MS.gene52292.t1 AT5G57540 52.091 263 118 4 32 290 26 284 1.92e-93 278
MS.gene52292.t1 AT4G03210 54.978 231 102 1 65 293 32 262 4.27e-93 276
MS.gene52292.t1 AT4G13090 48.944 284 138 4 8 288 10 289 3.02e-92 275
MS.gene52292.t1 AT5G48070 53.750 240 105 3 49 287 47 281 1.17e-89 268
MS.gene52292.t1 AT2G14620 45.775 284 150 3 8 287 11 294 1.75e-88 266
MS.gene52292.t1 AT4G28850 44.912 285 150 4 12 291 9 291 2.21e-88 265
MS.gene52292.t1 AT2G18800 48.162 272 122 4 32 287 28 296 4.25e-88 265
MS.gene52292.t1 AT4G25820 51.575 254 115 3 39 288 37 286 2.22e-87 263
MS.gene52292.t1 AT4G13080 46.718 259 135 3 30 288 37 292 1.78e-85 258
MS.gene52292.t1 AT3G25050 47.126 261 131 4 30 287 33 289 2.75e-85 258
MS.gene52292.t1 AT4G30290 53.097 226 100 3 63 287 56 276 2.54e-82 249
MS.gene52292.t1 AT1G65310 53.540 226 99 3 63 287 83 303 4.61e-82 250
MS.gene52292.t1 AT1G65310 53.540 226 99 3 63 287 61 281 5.31e-82 249
MS.gene52292.t1 AT4G30280 52.655 226 101 3 63 287 61 281 1.87e-81 248
MS.gene52292.t1 AT2G14620 48.739 238 120 2 52 287 7 244 4.08e-81 245
MS.gene52292.t1 AT2G14620 51.142 219 105 2 71 287 15 233 3.43e-79 240
MS.gene52292.t1 AT3G44990 42.264 265 136 7 31 287 38 293 7.73e-62 197
MS.gene52292.t1 AT1G32170 41.079 241 134 4 54 287 54 293 1.65e-60 196
MS.gene52292.t1 AT3G48580 39.535 258 140 5 30 287 32 273 1.77e-58 189
MS.gene52292.t1 AT1G14720 35.862 290 177 5 5 287 3 290 3.66e-58 189
MS.gene52292.t1 AT2G36870 40.244 246 132 5 52 289 61 299 1.97e-56 184
MS.gene52292.t1 AT4G18990 38.735 253 134 5 54 287 62 312 8.41e-55 181
MS.gene52292.t1 AT2G01850 34.859 284 178 4 10 287 8 290 8.99e-54 178
MS.gene52292.t1 AT1G10550 36.364 253 142 6 51 287 60 309 9.85e-53 175
MS.gene52292.t1 AT3G48580 38.938 226 123 4 62 287 4 214 8.19e-51 167
MS.gene52292.t1 AT3G48580 34.496 258 133 6 30 287 32 253 5.06e-43 148
MS.gene52292.t1 AT4G18990 34.914 232 124 5 81 287 9 238 7.72e-43 148
MS.gene52292.t1 AT2G36870 44.915 118 57 2 52 161 61 178 2.96e-28 107

Find 67 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAATGAGTTCTTCATTT+TGG 0.131936 7.3:-23864874 None:intergenic
ATCTTCATTGGTTGGTTAAA+TGG 0.164613 7.3:+23863566 None:intergenic
TGAAGATATACAACAGTTTA+TGG 0.169467 7.3:-23863550 MS.gene52292:CDS
GCCTTGTGTTGCACAGAATT+TGG 0.221522 7.3:+23863412 None:intergenic
TTCACAGATACTCTATTCTA+TGG 0.260832 7.3:-23864149 MS.gene52292:CDS
AAGAACAAAGGATCTTTCTT+TGG 0.288385 7.3:-23864191 MS.gene52292:CDS
ATCAGTGCAATAGTTATAAA+TGG 0.324527 7.3:+23863307 None:intergenic
CTTCCAAATGGTACATCAAC+TGG 0.347586 7.3:+23864791 None:intergenic
TCCAAAGGATCATATTTGTT+TGG 0.364894 7.3:-23864473 MS.gene52292:CDS
TACAAAAGTTTCCACATTGA+TGG 0.366093 7.3:-23863455 MS.gene52292:CDS
GCATCAAGATCACGAAATTC+AGG 0.366582 7.3:+23863371 None:intergenic
CTCAATGGCGTAGGCTAAGA+TGG 0.370855 7.3:-23863346 MS.gene52292:CDS
TTTATAACTATTGCACTGAT+AGG 0.375154 7.3:-23863304 MS.gene52292:CDS
AAACTGTTGTATATCTTCAT+TGG 0.377706 7.3:+23863554 None:intergenic
TATCTGTGAAACTCCTTTGT+TGG 0.396635 7.3:+23864162 None:intergenic
GATCATATCAAATACTTCAA+TGG 0.398017 7.3:-23864743 MS.gene52292:CDS
ACCTGCTATGAACGGTGCTT+TGG 0.403200 7.3:+23863478 None:intergenic
TTGTAGATGATGTACCAATC+AGG 0.405806 7.3:-23863625 MS.gene52292:CDS
AAGCCAGTTGATGTACCATT+TGG 0.408085 7.3:-23864794 MS.gene52292:CDS
GGTACATCAACTGGCTTCCT+TGG 0.412450 7.3:+23864800 None:intergenic
ACATTTGTTTGTAAAATGTA+AGG 0.414616 7.3:+23864237 None:intergenic
GAGTTCTTGGGGAACAGAAC+AGG 0.419669 7.3:-23864264 MS.gene52292:CDS
AGTTAAGTACTTACACAATC+TGG 0.424003 7.3:+23864118 None:intergenic
GCCAAACAAATATGATCCTT+TGG 0.424354 7.3:+23864472 None:intergenic
GTTTATGGAATGCTGATGAT+TGG 0.429689 7.3:-23863535 MS.gene52292:CDS
GGGTAATAGTTTCTTCCAAA+TGG 0.437329 7.3:+23864779 None:intergenic
CTGTTCTTGAACACCCTGAT+TGG 0.452101 7.3:+23863611 None:intergenic
TTGCATTCAGGTGGAATTTG+AGG 0.453359 7.3:+23863272 None:intergenic
ATGAACATAAAGATGGTTCC+TGG 0.454098 7.3:-23864440 MS.gene52292:CDS
TTACAAACAAATGTGTTCAC+TGG 0.454841 7.3:-23864228 MS.gene52292:CDS
GTGATCTTGATGCTGCTCAA+TGG 0.483264 7.3:-23863361 MS.gene52292:CDS
TGTTGTATATCTTCATTGGT+TGG 0.483857 7.3:+23863558 None:intergenic
ATGGTTCCTGGTGATTCAGC+TGG 0.504587 7.3:-23864428 MS.gene52292:CDS
ACATCAACTGGCTTCCTTGG+AGG 0.507363 7.3:+23864803 None:intergenic
TCCAAAGCACCGTTCATAGC+AGG 0.508716 7.3:-23863479 MS.gene52292:CDS
TTTATGGAATGCTGATGATT+GGG 0.520881 7.3:-23863534 MS.gene52292:CDS
TGTAGATGATGTACCAATCA+GGG 0.530316 7.3:-23863624 MS.gene52292:CDS
TGAAACTAAGATCAAACAAA+GGG 0.539959 7.3:+23864850 None:intergenic
CTTCACTCTGTGCTCCTCCA+AGG 0.543749 7.3:-23864817 MS.gene52292:CDS
TCTTTATGTTCATACTGAAG+TGG 0.547122 7.3:+23864450 None:intergenic
CTTCAGTATGAACATAAAGA+TGG 0.549292 7.3:-23864447 MS.gene52292:CDS
GTGCAACACAAGGCAAAAGA+TGG 0.550413 7.3:-23863403 MS.gene52292:CDS
CAACACAAGGCAAAAGATGG+TGG 0.550815 7.3:-23863400 MS.gene52292:CDS
CAAACAAATGTGTTCACTGG+TGG 0.551578 7.3:-23864225 MS.gene52292:CDS
GTGGATTAGAGAAAACTGAT+TGG 0.562589 7.3:-23863502 MS.gene52292:CDS
GCCAAATTCTGTGCAACACA+AGG 0.563859 7.3:-23863413 MS.gene52292:CDS
TGATGAAAATTTATATGTCA+CGG 0.576058 7.3:+23863243 None:intergenic
CTTCATCTTGATAAGTACAC+TGG 0.576529 7.3:-23864704 MS.gene52292:intron
TTCAAGAACAGCAAGGACTT+AGG 0.578577 7.3:-23863599 MS.gene52292:CDS
TTGATGCTGCTCAATGGCGT+AGG 0.593657 7.3:-23863355 MS.gene52292:CDS
GATGATTGGGCAACAAGAGG+TGG 0.601731 7.3:-23863521 MS.gene52292:CDS
GTGAAACTAAGATCAAACAA+AGG 0.607959 7.3:+23864849 None:intergenic
GAAGAAACTATTACCCCACA+TGG 0.609883 7.3:-23864772 MS.gene52292:CDS
TCAATGGCGTAGGCTAAGAT+GGG 0.614694 7.3:-23863345 MS.gene52292:CDS
AATGTGTTCACTGGTGGACA+AGG 0.617308 7.3:-23864219 MS.gene52292:CDS
AACACAAGGCAAAAGATGGT+GGG 0.620136 7.3:-23863399 MS.gene52292:CDS
TCTTTGGTTTGATCCAACAA+AGG 0.620801 7.3:-23864175 MS.gene52292:CDS
CATATCAAATACTTCAATGG+TGG 0.624848 7.3:-23864740 MS.gene52292:CDS
GATATGATCAAAAGCCCATG+TGG 0.628473 7.3:+23864757 None:intergenic
ATATGATCAAAAGCCCATGT+GGG 0.650159 7.3:+23864758 None:intergenic
ACTGTTCCAGCTGAATCACC+AGG 0.657325 7.3:+23864422 None:intergenic
GACAAGGTAACAAAGAACAA+AGG 0.658573 7.3:-23864203 MS.gene52292:CDS
ATGATTCACAACCATCAATG+TGG 0.677115 7.3:+23863444 None:intergenic
TATGATCAAAAGCCCATGTG+GGG 0.680488 7.3:+23864759 None:intergenic
GCTGATGATTGGGCAACAAG+AGG 0.682230 7.3:-23863524 MS.gene52292:CDS
AAGAAACTATTACCCCACAT+GGG 0.695451 7.3:-23864771 MS.gene52292:CDS
CAGGGTGTTCAAGAACAGCA+AGG 0.698366 7.3:-23863606 MS.gene52292:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATAAATTAGTTAC+TGG + chr7.3:23864423-23864442 None:intergenic 10.0%
!! TTTAAATATGATACAATATA+TGG + chr7.3:23864388-23864407 None:intergenic 10.0%
!! TTAAGTTATTTATAGAAACA+TGG + chr7.3:23863481-23863500 None:intergenic 15.0%
!! TTACTTTATAAATCTAAAAG+AGG + chr7.3:23864115-23864134 None:intergenic 15.0%
!! AATCATATTGAGATATGATT+TGG + chr7.3:23864167-23864186 None:intergenic 20.0%
!! ACATTTGTTTGTAAAATGTA+AGG + chr7.3:23863888-23863907 None:intergenic 20.0%
!! ATTCAAGATTGTTAAAGATT+AGG + chr7.3:23864051-23864070 None:intergenic 20.0%
!! TGTATGTACAAAAACATTTA+AGG - chr7.3:23863735-23863754 MS.gene52292:intron 20.0%
!! TTACACAAAAATAAATCAGT+TGG + chr7.3:23864455-23864474 None:intergenic 20.0%
!!! AGTTATAAATGGTGTATTTT+TGG + chr7.3:23864807-23864826 None:intergenic 20.0%
!!! ATAGTAAGTAACTAGTTTAA+TGG + chr7.3:23863583-23863602 None:intergenic 20.0%
!!! TTATTTTTGTGTAACTATGT+TGG - chr7.3:23864461-23864480 MS.gene52292:CDS 20.0%
!!! TTTCTAACTACTTTTTGTAT+AGG - chr7.3:23863613-23863632 MS.gene52292:CDS 20.0%
! AAACTGTTGTATATCTTCAT+TGG + chr7.3:23864571-23864590 None:intergenic 25.0%
! ATCAGTGCAATAGTTATAAA+TGG + chr7.3:23864818-23864837 None:intergenic 25.0%
! CTTACCTAAGAAGAATTAAT+TGG - chr7.3:23864301-23864320 MS.gene52292:CDS 25.0%
! GATCATATCAAATACTTCAA+TGG - chr7.3:23863379-23863398 MS.gene52292:CDS 25.0%
! TACACCAATTAATTCTTCTT+AGG + chr7.3:23864308-23864327 None:intergenic 25.0%
! TATAGAAACATGGTCTAAAT+AGG + chr7.3:23863471-23863490 None:intergenic 25.0%
! TGAAACTAAGATCAAACAAA+GGG + chr7.3:23863275-23863294 None:intergenic 25.0%
! TGAAGATATACAACAGTTTA+TGG - chr7.3:23864572-23864591 MS.gene52292:intron 25.0%
!! ATGATACAATATATGGATTG+TGG + chr7.3:23864381-23864400 None:intergenic 25.0%
!! TTTATAACTATTGCACTGAT+AGG - chr7.3:23864818-23864837 MS.gene52292:CDS 25.0%
!!! AAATAGATTTTGAGTTCTTG+GGG - chr7.3:23863847-23863866 MS.gene52292:intron 25.0%
!!! GAAATAGATTTTGAGTTCTT+GGG - chr7.3:23863846-23863865 MS.gene52292:intron 25.0%
!!! TGAAATAGATTTTGAGTTCT+TGG - chr7.3:23863845-23863864 MS.gene52292:intron 25.0%
AAGAACAAAGGATCTTTCTT+TGG - chr7.3:23863931-23863950 MS.gene52292:intron 30.0%
AGTTAAGTACTTACACAATC+TGG + chr7.3:23864007-23864026 None:intergenic 30.0%
CATATCAAATACTTCAATGG+TGG - chr7.3:23863382-23863401 MS.gene52292:CDS 30.0%
CTTCAGTATGAACATAAAGA+TGG - chr7.3:23863675-23863694 MS.gene52292:intron 30.0%
GTGAAACTAAGATCAAACAA+AGG + chr7.3:23863276-23863295 None:intergenic 30.0%
GTTAAAGATTAGGTGACTAT+TGG + chr7.3:23864041-23864060 None:intergenic 30.0%
TACAAAAGTTTCCACATTGA+TGG - chr7.3:23864667-23864686 MS.gene52292:intron 30.0%
TCCAAAGGATCATATTTGTT+TGG - chr7.3:23863649-23863668 MS.gene52292:intron 30.0%
TCTTTATGTTCATACTGAAG+TGG + chr7.3:23863675-23863694 None:intergenic 30.0%
TGTTGTATATCTTCATTGGT+TGG + chr7.3:23864567-23864586 None:intergenic 30.0%
TTACAAACAAATGTGTTCAC+TGG - chr7.3:23863894-23863913 MS.gene52292:intron 30.0%
TTCACAGATACTCTATTCTA+TGG - chr7.3:23863973-23863992 MS.gene52292:intron 30.0%
TTTATGGAATGCTGATGATT+GGG - chr7.3:23864588-23864607 MS.gene52292:intron 30.0%
! ATCTTCATTGGTTGGTTAAA+TGG + chr7.3:23864559-23864578 None:intergenic 30.0%
!!! ACTACTTTTTGTATAGGTAC+TGG - chr7.3:23863619-23863638 MS.gene52292:CDS 30.0%
AAAAGAGGAGCTAGATTTAG+TGG + chr7.3:23864100-23864119 None:intergenic 35.0%
AAAGAGGAGCTAGATTTAGT+GGG + chr7.3:23864099-23864118 None:intergenic 35.0%
AAGAAACTATTACCCCACAT+GGG - chr7.3:23863351-23863370 MS.gene52292:CDS 35.0%
ATATGATCAAAAGCCCATGT+GGG + chr7.3:23863367-23863386 None:intergenic 35.0%
ATGAACATAAAGATGGTTCC+TGG - chr7.3:23863682-23863701 MS.gene52292:intron 35.0%
ATGATTCACAACCATCAATG+TGG + chr7.3:23864681-23864700 None:intergenic 35.0%
CTTCATCTTGATAAGTACAC+TGG - chr7.3:23863418-23863437 MS.gene52292:CDS 35.0%
GACAAGGTAACAAAGAACAA+AGG - chr7.3:23863919-23863938 MS.gene52292:intron 35.0%
GCCAAACAAATATGATCCTT+TGG + chr7.3:23863653-23863672 None:intergenic 35.0%
GGGTAATAGTTTCTTCCAAA+TGG + chr7.3:23863346-23863365 None:intergenic 35.0%
GTTTATGGAATGCTGATGAT+TGG - chr7.3:23864587-23864606 MS.gene52292:intron 35.0%
TATCTGTGAAACTCCTTTGT+TGG + chr7.3:23863963-23863982 None:intergenic 35.0%
TGTAGATGATGTACCAATCA+GGG - chr7.3:23864498-23864517 MS.gene52292:intron 35.0%
TTGTAGATGATGTACCAATC+AGG - chr7.3:23864497-23864516 MS.gene52292:intron 35.0%
! CTTTTGTAACCTGCTATGAA+CGG + chr7.3:23864655-23864674 None:intergenic 35.0%
! GTGTAATGGAATGGTGAAAA+GGG + chr7.3:23864075-23864094 None:intergenic 35.0%
! TAGATTTAGTGGGTGTGTAA+TGG + chr7.3:23864089-23864108 None:intergenic 35.0%
! TGTGTAATGGAATGGTGAAA+AGG + chr7.3:23864076-23864095 None:intergenic 35.0%
!! GTGGATTAGAGAAAACTGAT+TGG - chr7.3:23864620-23864639 MS.gene52292:intron 35.0%
!! TCTTTGGTTTGATCCAACAA+AGG - chr7.3:23863947-23863966 MS.gene52292:intron 35.0%
!!! TGTAACTATGTTGGTTTTGC+AGG - chr7.3:23864470-23864489 MS.gene52292:CDS 35.0%
AACACAAGGCAAAAGATGGT+GGG - chr7.3:23864723-23864742 MS.gene52292:CDS 40.0%
CAAACAAATGTGTTCACTGG+TGG - chr7.3:23863897-23863916 MS.gene52292:intron 40.0%
CTTCCAAATGGTACATCAAC+TGG + chr7.3:23863334-23863353 None:intergenic 40.0%
GAAGAAACTATTACCCCACA+TGG - chr7.3:23863350-23863369 MS.gene52292:CDS 40.0%
GATATGATCAAAAGCCCATG+TGG + chr7.3:23863368-23863387 None:intergenic 40.0%
GCATCAAGATCACGAAATTC+AGG + chr7.3:23864754-23864773 None:intergenic 40.0%
TATGATCAAAAGCCCATGTG+GGG + chr7.3:23863366-23863385 None:intergenic 40.0%
TTCAAGAACAGCAAGGACTT+AGG - chr7.3:23864523-23864542 MS.gene52292:intron 40.0%
TTGCATTCAGGTGGAATTTG+AGG + chr7.3:23864853-23864872 None:intergenic 40.0%
! AAGCCAGTTGATGTACCATT+TGG - chr7.3:23863328-23863347 MS.gene52292:CDS 40.0%
! TTAGTGGGTGTGTAATGGAA+TGG + chr7.3:23864084-23864103 None:intergenic 40.0%
CAACACAAGGCAAAAGATGG+TGG - chr7.3:23864722-23864741 MS.gene52292:CDS 45.0%
CTGTTCTTGAACACCCTGAT+TGG + chr7.3:23864514-23864533 None:intergenic 45.0%
GCCAAATTCTGTGCAACACA+AGG - chr7.3:23864709-23864728 MS.gene52292:CDS 45.0%
GCCTTGTGTTGCACAGAATT+TGG + chr7.3:23864713-23864732 None:intergenic 45.0%
GTGATCTTGATGCTGCTCAA+TGG - chr7.3:23864761-23864780 MS.gene52292:CDS 45.0%
GTGCAACACAAGGCAAAAGA+TGG - chr7.3:23864719-23864738 MS.gene52292:CDS 45.0%
TCAATGGCGTAGGCTAAGAT+GGG - chr7.3:23864777-23864796 MS.gene52292:CDS 45.0%
! AATGTGTTCACTGGTGGACA+AGG - chr7.3:23863903-23863922 MS.gene52292:intron 45.0%
! TCACGGTCTCTTTTGCATTC+AGG + chr7.3:23864865-23864884 None:intergenic 45.0%
!!! GGTACTGGTTTTCAGTCCAA+AGG - chr7.3:23863634-23863653 MS.gene52292:intron 45.0%
ACCTGCTATGAACGGTGCTT+TGG + chr7.3:23864647-23864666 None:intergenic 50.0%
ACTGTTCCAGCTGAATCACC+AGG + chr7.3:23863703-23863722 None:intergenic 50.0%
ATGGTTCCTGGTGATTCAGC+TGG - chr7.3:23863694-23863713 MS.gene52292:intron 50.0%
CTCAATGGCGTAGGCTAAGA+TGG - chr7.3:23864776-23864795 MS.gene52292:CDS 50.0%
GAGTTCTTGGGGAACAGAAC+AGG - chr7.3:23863858-23863877 MS.gene52292:intron 50.0%
GATGATTGGGCAACAAGAGG+TGG - chr7.3:23864601-23864620 MS.gene52292:intron 50.0%
GCTGATGATTGGGCAACAAG+AGG - chr7.3:23864598-23864617 MS.gene52292:intron 50.0%
TTGATGCTGCTCAATGGCGT+AGG - chr7.3:23864767-23864786 MS.gene52292:CDS 50.0%
! ACATCAACTGGCTTCCTTGG+AGG + chr7.3:23863322-23863341 None:intergenic 50.0%
! CAGGGTGTTCAAGAACAGCA+AGG - chr7.3:23864516-23864535 MS.gene52292:intron 50.0%
! CGGTCTCTTTTGCATTCAGG+TGG + chr7.3:23864862-23864881 None:intergenic 50.0%
! GGTACATCAACTGGCTTCCT+TGG + chr7.3:23863325-23863344 None:intergenic 50.0%
!! TCCAAAGCACCGTTCATAGC+AGG - chr7.3:23864643-23864662 MS.gene52292:intron 50.0%
CTTCACTCTGTGCTCCTCCA+AGG - chr7.3:23863305-23863324 MS.gene52292:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 23863253 23864891 23863253 ID=MS.gene52292
chr7.3 mRNA 23863253 23864891 23863253 ID=MS.gene52292.t1;Parent=MS.gene52292
chr7.3 exon 23864705 23864891 23864705 ID=MS.gene52292.t1.exon1;Parent=MS.gene52292.t1
chr7.3 CDS 23864705 23864891 23864705 ID=cds.MS.gene52292.t1;Parent=MS.gene52292.t1
chr7.3 exon 23864409 23864509 23864409 ID=MS.gene52292.t1.exon2;Parent=MS.gene52292.t1
chr7.3 CDS 23864409 23864509 23864409 ID=cds.MS.gene52292.t1;Parent=MS.gene52292.t1
chr7.3 exon 23864132 23864325 23864132 ID=MS.gene52292.t1.exon3;Parent=MS.gene52292.t1
chr7.3 CDS 23864132 23864325 23864132 ID=cds.MS.gene52292.t1;Parent=MS.gene52292.t1
chr7.3 exon 23863253 23863652 23863253 ID=MS.gene52292.t1.exon4;Parent=MS.gene52292.t1
chr7.3 CDS 23863253 23863652 23863253 ID=cds.MS.gene52292.t1;Parent=MS.gene52292.t1
Gene Sequence

>MS.gene52292

ATGAGTTCTTCATTTTGGACCCTTTGTTTGATCTTAGTTTCACTAGTTTCTTCTTCACTCTGTGCTCCTCCAAGGAAGCCAGTTGATGTACCATTTGGAAGAAACTATTACCCCACATGGGCTTTTGATCATATCAAATACTTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGGTTAGTGTTTTAAAAACTTCAAAACTTTCCTATTTAGACCATGTTTCTATAAATAACTTAATAAGTAGCTTATAATATGTAACTTATAACAAAAAGATAAAATAATGTTCTTGAAATGTTTATGAAAATAATGTTTCTTACCATTAAACTAGTTACTTACTATATTGTTCATTTTTCTAACTACTTTTTGTATAGGTACTGGTTTTCAGTCCAAAGGATCATATTTGTTTGGCCACTTCAGTATGAACATAAAGATGGTTCCTGGTGATTCAGCTGGAACAGTCACTGCTTTCTATGTATGTACAAAAACATTTAAGGTTTTCAATTTTGCTTCTATTTTTAGTAATTTTTTGTAATAATCTTTGTTGATACTTTACAGCTATCTTCACAAAATGCTGAGCATGATGAAATAGATTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTACAAACAAATGTGTTCACTGGTGGACAAGGTAACAAAGAACAAAGGATCTTTCTTTGGTTTGATCCAACAAAGGAGTTTCACAGATACTCTATTCTATGGAACATGTACCAGATTGTGTAAGTACTTAACTCAACTATTGTGCCAATAGTCACCTAATCTTTAACAATCTTGAATACCCTTTTCACCATTCCATTACACACCCACTAAATCTAGCTCCTCTTTTAGATTTATAAAGTAAGTATATGTTTGAATTTACTAACAGTTTGACCAAATCATATCTCAATATGATTTTGTTAAATCTAAACATTTGCACAAATTAAATAAGTACTTAAATGAGTATTTTTGCAATGCTTAATATTATTACATTCTTGATTGAAGCATTTGTGATAAGAAAAACATGAAATCTTACCTAAGAAGAATTAATTGGTGTAACTAACTAAGTATAAATAAATGACTTATATGTATAATATTTAATTTAAAGCCACAATCCATATATTGTATCATATTTAAATTTAAATTAAATCCAGTAACTAATTTATTTATTTTTAATTTTGACCAACTGATTTATTTTTGTGTAACTATGTTGGTTTTGCAGGTTTTTTGTAGATGATGTACCAATCAGGGTGTTCAAGAACAGCAAGGACTTAGGAGTGAAATTTCCATTTAACCAACCAATGAAGATATACAACAGTTTATGGAATGCTGATGATTGGGCAACAAGAGGTGGATTAGAGAAAACTGATTGGTCCAAAGCACCGTTCATAGCAGGTTACAAAAGTTTCCACATTGATGGTTGTGAATCATCTGTACAAGCCAAATTCTGTGCAACACAAGGCAAAAGATGGTGGGATCAACCTGAATTTCGTGATCTTGATGCTGCTCAATGGCGTAGGCTAAGATGGGTGCGCCAAAAATACACCATTTATAACTATTGCACTGATAGGAAACGTTTGCCTCAAATTCCACCTGAATGCAAAAGAGACCGTGACATATAA
Protein sequence

>MS.gene52292.t1

MSSSFWTLCLILVSLVSSSLCAPPRKPVDVPFGRNYYPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGQGNKEQRIFLWFDPTKEFHRYSILWNMYQIVFFVDDVPIRVFKNSKDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAGYKSFHIDGCESSVQAKFCATQGKRWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDRKRLPQIPPECKRDRDI