AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069844


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069844.t1 MTR_6g033055 98.294 293 5 0 1 293 1 293 0.0 605
MS.gene069844.t1 MTR_6g033085 95.904 293 12 0 1 293 1 293 0.0 593
MS.gene069844.t1 MTR_7g084760 83.959 293 47 0 1 293 1 293 0.0 528
MS.gene069844.t1 MTR_7g084770 83.276 293 49 0 1 293 1 293 0.0 526
MS.gene069844.t1 MTR_7g084750 80.205 293 58 0 1 293 1 293 0.0 511
MS.gene069844.t1 MTR_4g128410 56.028 282 110 4 9 287 10 280 2.33e-106 311
MS.gene069844.t1 MTR_4g097640 51.773 282 129 3 7 287 12 287 9.82e-103 302
MS.gene069844.t1 MTR_4g097670 51.773 282 129 3 7 287 12 287 9.82e-103 302
MS.gene069844.t1 MTR_4g097700 54.475 257 115 2 32 287 69 324 6.40e-102 301
MS.gene069844.t1 MTR_4g045853 48.639 294 130 4 4 289 10 290 6.42e-102 300
MS.gene069844.t1 MTR_2g089140 48.110 291 134 5 8 289 6 288 5.62e-101 297
MS.gene069844.t1 MTR_3g084620 51.724 290 123 4 3 291 8 281 2.87e-100 295
MS.gene069844.t1 MTR_3g084630 51.027 292 131 3 1 291 1 281 2.97e-100 295
MS.gene069844.t1 MTR_7g093530 53.546 282 117 4 9 287 9 279 3.81e-99 292
MS.gene069844.t1 MTR_8g081040 55.039 258 109 3 32 288 31 282 8.54e-99 291
MS.gene069844.t1 MTR_4g128580 55.263 266 107 3 32 289 26 287 2.23e-98 291
MS.gene069844.t1 MTR_4g128570 52.297 283 116 4 7 288 9 273 6.98e-98 289
MS.gene069844.t1 MTR_4g128400 50.360 278 128 3 11 287 15 283 5.65e-94 280
MS.gene069844.t1 MTR_1g105495 48.239 284 143 2 9 288 12 295 1.02e-92 277
MS.gene069844.t1 MTR_2g038860 48.299 294 131 4 7 291 9 290 3.62e-92 275
MS.gene069844.t1 MTR_2g038705 48.299 294 131 4 7 291 9 290 3.62e-92 275
MS.gene069844.t1 MTR_4g126920 49.462 279 124 4 15 288 16 282 4.85e-91 272
MS.gene069844.t1 MTR_8g102220 48.630 292 120 6 1 291 8 270 1.54e-90 270
MS.gene069844.t1 MTR_1g105900 46.975 281 144 3 10 288 15 292 5.98e-90 270
MS.gene069844.t1 MTR_6g088320 47.727 264 132 4 28 287 22 283 2.19e-89 268
MS.gene069844.t1 MTR_8g102910 43.771 297 147 6 1 291 1 283 5.97e-89 266
MS.gene069844.t1 MTR_2g089140 52.000 225 100 2 73 289 1 225 1.04e-88 264
MS.gene069844.t1 MTR_8g013055 48.263 259 133 1 29 287 28 285 7.34e-87 261
MS.gene069844.t1 MTR_4g128590 46.441 295 122 5 2 287 8 275 9.49e-84 253
MS.gene069844.t1 MTR_5g091730 43.643 291 145 4 2 289 6 280 2.24e-78 240
MS.gene069844.t1 MTR_3g089540 46.721 244 125 2 51 293 49 288 1.59e-76 235
MS.gene069844.t1 MTR_7g056090 42.857 280 150 6 9 287 11 281 4.54e-73 226
MS.gene069844.t1 MTR_2g049030 45.211 261 130 9 29 287 27 276 1.12e-69 217
MS.gene069844.t1 MTR_2g049130 42.029 276 150 8 7 277 1 271 1.47e-64 204
MS.gene069844.t1 MTR_8g064180 35.452 299 172 5 9 287 13 310 3.21e-60 194
MS.gene069844.t1 MTR_4g057450 35.786 299 159 8 9 287 19 304 1.04e-58 190
MS.gene069844.t1 MTR_1g033420 35.932 295 174 6 5 290 6 294 1.44e-57 188
MS.gene069844.t1 MTR_5g029100 37.546 269 154 6 30 287 40 305 7.45e-56 184
MS.gene069844.t1 MTR_7g102260 39.331 239 130 6 58 288 61 292 4.66e-55 180
MS.gene069844.t1 MTR_8g090100 35.640 289 164 7 11 288 5 282 5.06e-55 181
MS.gene069844.t1 MTR_1g063020 37.453 267 150 7 29 287 37 294 5.12e-55 180
MS.gene069844.t1 MTR_2g095800 36.567 268 150 8 30 287 52 309 3.07e-53 176
MS.gene069844.t1 MTR_5g029100 39.024 246 135 7 54 287 32 274 4.30e-52 173
MS.gene069844.t1 MTR_8g479340 34.759 187 61 3 103 288 10 136 2.74e-27 103
MS.gene069844.t1 MTR_8g032640 31.609 174 111 4 54 225 33 200 4.33e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069844.t1 AT5G13870 76.109 293 67 1 1 293 4 293 2.74e-175 486
MS.gene069844.t1 AT5G13870 76.109 293 67 1 1 293 4 293 2.74e-175 486
MS.gene069844.t1 AT5G13870 76.109 293 67 1 1 293 4 293 2.74e-175 486
MS.gene069844.t1 AT2G06850 73.469 294 75 2 1 292 3 295 1.05e-166 464
MS.gene069844.t1 AT2G06850 78.788 231 49 0 62 292 5 235 1.23e-143 404
MS.gene069844.t1 AT5G65730 50.526 285 134 3 4 287 12 290 9.23e-105 307
MS.gene069844.t1 AT3G23730 54.924 264 115 2 32 291 27 290 5.17e-104 305
MS.gene069844.t1 AT4G14130 51.557 289 125 4 7 291 11 288 1.32e-102 301
MS.gene069844.t1 AT5G57550 51.389 288 133 3 1 287 1 282 1.88e-101 298
MS.gene069844.t1 AT5G57560 50.865 289 123 4 6 287 5 281 7.05e-100 294
MS.gene069844.t1 AT4G37800 52.326 258 121 2 32 288 34 290 2.06e-99 293
MS.gene069844.t1 AT4G03210 47.766 291 144 3 5 293 6 290 1.60e-98 291
MS.gene069844.t1 AT4G25810 51.568 287 121 5 7 287 9 283 9.24e-98 289
MS.gene069844.t1 AT4G30270 51.408 284 111 5 9 288 6 266 5.98e-97 286
MS.gene069844.t1 AT4G13090 49.822 281 134 4 12 287 10 288 7.55e-95 282
MS.gene069844.t1 AT5G57530 54.941 253 106 4 39 287 34 282 3.14e-94 280
MS.gene069844.t1 AT5G57540 53.846 260 112 4 32 287 26 281 1.01e-93 279
MS.gene069844.t1 AT1G11545 48.951 286 136 4 9 288 19 300 9.29e-93 277
MS.gene069844.t1 AT4G03210 49.609 256 124 2 40 293 10 262 4.96e-92 274
MS.gene069844.t1 AT2G18800 50.183 273 117 4 32 288 28 297 1.11e-91 274
MS.gene069844.t1 AT4G28850 45.552 281 146 5 16 291 13 291 9.14e-89 266
MS.gene069844.t1 AT2G14620 47.876 259 133 2 32 288 37 295 4.00e-88 265
MS.gene069844.t1 AT4G25820 49.819 277 123 4 15 287 21 285 4.44e-88 265
MS.gene069844.t1 AT3G25050 49.042 261 126 4 30 287 33 289 2.79e-87 263
MS.gene069844.t1 AT5G48070 51.452 241 111 3 49 288 47 282 7.25e-86 259
MS.gene069844.t1 AT4G13080 47.287 258 133 3 30 287 37 291 2.60e-85 258
MS.gene069844.t1 AT1G65310 52.863 227 101 3 63 288 83 304 3.02e-81 248
MS.gene069844.t1 AT2G14620 50.439 228 111 2 63 288 18 245 3.14e-81 246
MS.gene069844.t1 AT1G65310 52.863 227 101 3 63 288 61 282 3.30e-81 247
MS.gene069844.t1 AT4G30280 51.982 227 103 3 63 288 61 282 4.52e-81 246
MS.gene069844.t1 AT4G30290 51.867 241 110 3 49 288 42 277 1.22e-80 245
MS.gene069844.t1 AT2G14620 50.909 220 106 2 71 288 15 234 2.32e-79 241
MS.gene069844.t1 AT3G44990 39.456 294 152 10 9 287 11 293 1.89e-60 194
MS.gene069844.t1 AT1G32170 35.117 299 163 6 5 288 12 294 1.24e-56 186
MS.gene069844.t1 AT3G48580 39.768 259 138 6 30 287 32 273 2.34e-56 183
MS.gene069844.t1 AT1G14720 34.965 286 178 5 9 288 8 291 1.70e-55 182
MS.gene069844.t1 AT1G10550 38.340 253 137 6 51 287 60 309 2.81e-55 181
MS.gene069844.t1 AT2G36870 40.417 240 128 5 58 289 67 299 2.00e-54 179
MS.gene069844.t1 AT2G01850 34.812 293 178 8 3 288 5 291 7.81e-53 176
MS.gene069844.t1 AT4G18990 37.008 254 139 5 54 288 62 313 4.22e-51 172
MS.gene069844.t1 AT3G48580 40.088 227 119 5 62 287 4 214 1.52e-49 164
MS.gene069844.t1 AT3G48580 34.363 259 132 7 30 287 32 253 4.29e-41 143
MS.gene069844.t1 AT4G18990 34.978 223 117 5 92 288 19 239 6.19e-41 143
MS.gene069844.t1 AT2G36870 45.536 112 53 2 58 161 67 178 3.34e-27 104

Find 59 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATCATGTTCTGCATTT+TGG 0.090231 6.2:+21448000 None:intergenic
TGAAAATATACAATAGTTTA+TGG 0.145009 6.2:-21446975 MS.gene069844:CDS
TCCAAAGGGTCTTATTTATT+TGG 0.166110 6.2:-21448359 MS.gene069844:CDS
TAATAAGTACTTACACAATT+TGG 0.177004 6.2:+21447823 None:intergenic
ATGTTCTTGAACACCCTTAT+TGG 0.186258 6.2:+21447036 None:intergenic
GATCATATCAAATACTTAAA+TGG 0.261028 6.2:-21449408 MS.gene069844:CDS
TACAAAGGGTTTCATATTGA+TGG 0.286250 6.2:-21446880 MS.gene069844:CDS
GAGAACAAAGAATTTATCTT+TGG 0.295346 6.2:-21447896 MS.gene069844:CDS
TTGTGGATGATATTCCAATA+AGG 0.311508 6.2:-21447050 MS.gene069844:CDS
ACATCAAGGTCATGAAATTC+AGG 0.340788 6.2:+21446796 None:intergenic
GTCGTAATTATGTGCCTACT+TGG 0.343620 6.2:-21449437 MS.gene069844:CDS
ACCAAATAAATAAGACCCTT+TGG 0.370193 6.2:+21448358 None:intergenic
CTCAATGGCAAAGGCTAAGA+TGG 0.402835 6.2:-21446771 MS.gene069844:CDS
TTCAAGAACATCAATCAGTT+AGG 0.408800 6.2:-21447024 MS.gene069844:CDS
AGATCATGAATTCTTCTTTG+TGG 0.412540 6.2:-21449539 None:intergenic
TGTGGATGATATTCCAATAA+GGG 0.413494 6.2:-21447049 MS.gene069844:CDS
ACTCCTGTTGATGTTCCATT+TGG 0.413889 6.2:-21449459 MS.gene069844:CDS
CCCTTTGTAAGAGGCTATGA+AGG 0.414088 6.2:+21446894 None:intergenic
AGAGGCTATGAAGGGTGCTT+TGG 0.415798 6.2:+21446903 None:intergenic
GTTTATGGAATGCTGATGAT+TGG 0.416209 6.2:-21446960 MS.gene069844:CDS
CGACCAAATGGAACATCAAC+AGG 0.417482 6.2:+21449456 None:intergenic
ACATTTGTTTGTAAAATGTA+TGG 0.428949 6.2:+21447942 None:intergenic
AATATGAAACCCTTTGTAAG+AGG 0.460984 6.2:+21446885 None:intergenic
TTGGGCCACAAGGGGTGGAT+TGG 0.461492 6.2:-21446941 MS.gene069844:CDS
ATAAATAAGACCCTTTGGAT+TGG 0.463620 6.2:+21448363 None:intergenic
GGAACATCAACAGGAGTCCT+TGG 0.467558 6.2:+21449465 None:intergenic
GGCACATAATTACGACCAAA+TGG 0.477157 6.2:+21449444 None:intergenic
GAGTTCTTAGGGAACAGAAC+AGG 0.482915 6.2:-21447969 MS.gene069844:CDS
TATGGAATGCAGTTTCTTTG+TGG 0.485427 6.2:-21447067 MS.gene069844:intron
TCAAGAACATCAATCAGTTA+GGG 0.487977 6.2:-21447023 MS.gene069844:CDS
ATCACAGATATTCTGTGTTG+TGG 0.499456 6.2:-21447854 MS.gene069844:CDS
TACACTCTTGAGGAACTTGA+GGG 0.504511 6.2:+21446698 None:intergenic
CCCTTCATAGCCTCTTACAA+AGG 0.505336 6.2:-21446895 MS.gene069844:CDS
CCTTCATAGCCTCTTACAAA+GGG 0.513581 6.2:-21446894 MS.gene069844:CDS
ATGGTACCTGGTGATTCAGC+TGG 0.518135 6.2:-21448314 MS.gene069844:CDS
TTTATGGAATGCTGATGATT+GGG 0.520881 6.2:-21446959 MS.gene069844:CDS
CTGTCTCTTGTACACTCTTG+AGG 0.521195 6.2:+21446688 None:intergenic
CTTAATCTTGATAAATCCAC+TGG 0.526040 6.2:-21449369 MS.gene069844:intron
ATGACCTTGATGTTGCTCAA+TGG 0.530219 6.2:-21446786 MS.gene069844:CDS
TCGTAATTATGTGCCTACTT+GGG 0.537039 6.2:-21449436 MS.gene069844:CDS
TTTGCCATTGAGCAACATCA+AGG 0.537545 6.2:+21446782 None:intergenic
GATGATTGGGCCACAAGGGG+TGG 0.538500 6.2:-21446946 MS.gene069844:CDS
CTTCAGTATGTACATAAGAA+TGG 0.540587 6.2:-21448333 MS.gene069844:CDS
TTTCTCCAATCCACCCCTTG+TGG 0.544658 6.2:+21446936 None:intergenic
GTACACTCTTGAGGAACTTG+AGG 0.544701 6.2:+21446697 None:intergenic
ATGCTGATGATTGGGCCACA+AGG 0.558889 6.2:-21446951 MS.gene069844:CDS
TGCTGATGATTGGGCCACAA+GGG 0.560025 6.2:-21446950 MS.gene069844:CDS
TTGATGTTGCTCAATGGCAA+AGG 0.585400 6.2:-21446780 MS.gene069844:CDS
GTGGATTGGAGAAAACAGAT+TGG 0.591719 6.2:-21446927 MS.gene069844:CDS
GGTACTGGCTTCCAATCCAA+AGG 0.596794 6.2:-21448374 MS.gene069844:CDS
GTACTGGCTTCCAATCCAAA+GGG 0.598591 6.2:-21448373 MS.gene069844:CDS
CATATCAAATACTTAAATGG+TGG 0.615790 6.2:-21449405 MS.gene069844:CDS
TCAATGGCAAAGGCTAAGAT+GGG 0.621555 6.2:-21446770 MS.gene069844:CDS
GCTGATGATTGGGCCACAAG+GGG 0.635602 6.2:-21446949 MS.gene069844:CDS
ATATGATCATAAGCCCAAGT+AGG 0.638602 6.2:+21449423 None:intergenic
CCTTTGTAAGAGGCTATGAA+GGG 0.655937 6.2:+21446895 None:intergenic
ACTGTTCCAGCTGAATCACC+AGG 0.670532 6.2:+21448308 None:intergenic
ATGTACATAAGAATGGTACC+TGG 0.672045 6.2:-21448326 MS.gene069844:CDS
CAAGAACATCAATCAGTTAG+GGG 0.677246 6.2:-21447022 MS.gene069844:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAGTAGTAATA+AGG + chr6.2:21447416-21447435 None:intergenic 10.0%
!! AAATATGTTTAATAATTTGA+CGG + chr6.2:21448036-21448055 None:intergenic 10.0%
!! AATTGTTCTATAAAATAAAA+AGG - chr6.2:21448966-21448985 MS.gene069844:intron 10.0%
!! TTATTTCAAAATAAATTAGA+GGG - chr6.2:21447560-21447579 MS.gene069844:intron 10.0%
!! TTTATCACAAATATAAAAAT+AGG - chr6.2:21447341-21447360 MS.gene069844:intron 10.0%
!! TTTATTTCAAAATAAATTAG+AGG - chr6.2:21447559-21447578 MS.gene069844:intron 10.0%
!!! AGTTTTATTATTATGAATTT+TGG - chr6.2:21447597-21447616 MS.gene069844:intron 10.0%
!!! GAACAATATTTTTTTTTTAT+AGG - chr6.2:21446903-21446922 MS.gene069844:CDS 10.0%
!! AAAAACATTATTATCTTTCT+TGG + chr6.2:21448589-21448608 None:intergenic 15.0%
!! TGAAAATATACAATAGTTTA+TGG - chr6.2:21449237-21449256 MS.gene069844:intron 15.0%
!!! AAACTATTGTATATTTTCAT+TGG + chr6.2:21449236-21449255 None:intergenic 15.0%
!!! ATAATAAAACTCTCTATTTT+TGG + chr6.2:21447588-21447607 None:intergenic 15.0%
!!! ATGTAATTATTTTTTACCAA+TGG + chr6.2:21447997-21448016 None:intergenic 15.0%
!!! ATTTGATTTATATATACCAT+TGG - chr6.2:21447978-21447997 MS.gene069844:CDS 15.0%
!!! ATTTTCTAAATTATCGTTTA+AGG - chr6.2:21448941-21448960 MS.gene069844:intron 15.0%
!!! CTTACTTATTTACATTTTTT+TGG - chr6.2:21446980-21446999 MS.gene069844:CDS 15.0%
!!! TAACAAAAATGAGTTTTATT+AGG + chr6.2:21447790-21447809 None:intergenic 15.0%
!!! TAATAAAACTCTCTATTTTT+GGG + chr6.2:21447587-21447606 None:intergenic 15.0%
!!! TGTTATAAAGAATGTAATTT+TGG + chr6.2:21448634-21448653 None:intergenic 15.0%
!!! TTTTCTAAATTATCGTTTAA+GGG - chr6.2:21448942-21448961 MS.gene069844:intron 15.0%
!!! TTTTTTTTTATAGGTTTCTA+TGG - chr6.2:21446912-21446931 MS.gene069844:CDS 15.0%
!! ACAACAAAAATCATGTTAAA+AGG + chr6.2:21449070-21449089 None:intergenic 20.0%
!! ACATTTGTTTGTAAAATGTA+TGG + chr6.2:21448273-21448292 None:intergenic 20.0%
!! ATGTAAAGTCAAAATAAGTT+AGG + chr6.2:21448171-21448190 None:intergenic 20.0%
!! ATTTGGATTAAAAAAAACGT+AGG + chr6.2:21448805-21448824 None:intergenic 20.0%
!! CTCTTATAAAAACTCAAATA+TGG - chr6.2:21449127-21449146 MS.gene069844:intron 20.0%
!! GATCATATCAAATACTTAAA+TGG - chr6.2:21446804-21446823 MS.gene069844:CDS 20.0%
!! TAATAAGTACTTACACAATT+TGG + chr6.2:21448392-21448411 None:intergenic 20.0%
!! TGAAATAAAAAGAAATAGAG+AGG + chr6.2:21447548-21447567 None:intergenic 20.0%
!!! AACATTTTAATGTCCTATTT+AGG - chr6.2:21447023-21447042 MS.gene069844:CDS 20.0%
!!! AACTTATTTTGACTTTACAT+TGG - chr6.2:21448171-21448190 MS.gene069844:intron 20.0%
!!! ATAAGGAATGTACTTTTATA+GGG - chr6.2:21447452-21447471 MS.gene069844:intron 20.0%
!!! ATTTTCTTAGAAAAACTAAG+AGG - chr6.2:21447719-21447738 MS.gene069844:intron 20.0%
!!! TAAAGTTTGAGGTAAAAATA+TGG + chr6.2:21448478-21448497 None:intergenic 20.0%
!!! TATAAGGAATGTACTTTTAT+AGG - chr6.2:21447451-21447470 MS.gene069844:intron 20.0%
!!! TATTGTATATTTTCATTGGT+TGG + chr6.2:21449232-21449251 None:intergenic 20.0%
! ACATTCATATTCTTAGAACT+GGG + chr6.2:21447649-21447668 None:intergenic 25.0%
! ACTAATAGACAATTAGGAAA+AGG + chr6.2:21447763-21447782 None:intergenic 25.0%
! CATATCAAATACTTAAATGG+TGG - chr6.2:21446807-21446826 MS.gene069844:CDS 25.0%
! GAGAACAAAGAATTTATCTT+TGG - chr6.2:21448316-21448335 MS.gene069844:CDS 25.0%
! GGTATAACTAATAGACAATT+AGG + chr6.2:21447769-21447788 None:intergenic 25.0%
! TACATTCATATTCTTAGAAC+TGG + chr6.2:21447650-21447669 None:intergenic 25.0%
! TAGTAAGTGATAAACTTATG+CGG - chr6.2:21447191-21447210 MS.gene069844:intron 25.0%
! TCCTTACATCAACATTTATA+AGG - chr6.2:21447435-21447454 MS.gene069844:intron 25.0%
! TCCTTATAAATGTTGATGTA+AGG + chr6.2:21447439-21447458 None:intergenic 25.0%
!! ATGCAATTTTTGTACATAAC+AGG - chr6.2:21447817-21447836 MS.gene069844:intron 25.0%
!! CTTTAGATCAGTTCAATTTT+AGG - chr6.2:21448493-21448512 MS.gene069844:intron 25.0%
!! CTTTTATAGGGTGTAAAATA+TGG - chr6.2:21447464-21447483 MS.gene069844:intron 25.0%
!! TTACAAACAAATGTTTTCAC+AGG - chr6.2:21448279-21448298 MS.gene069844:intron 25.0%
!!! AGATAGATTTTGAGTTCTTA+GGG - chr6.2:21448232-21448251 MS.gene069844:intron 25.0%
!!! ATTTTCATTGGTTGGTTAAA+TGG + chr6.2:21449224-21449243 None:intergenic 25.0%
!!! TTTTCATTGGTTGGTTAAAT+GGG + chr6.2:21449223-21449242 None:intergenic 25.0%
AAATGATAATAGCATACCAG+TGG + chr6.2:21446862-21446881 None:intergenic 30.0%
AATATGAAACCCTTTGTAAG+AGG + chr6.2:21449330-21449349 None:intergenic 30.0%
ACCAAATAAATAAGACCCTT+TGG + chr6.2:21447857-21447876 None:intergenic 30.0%
ATAAATAAGACCCTTTGGAT+TGG + chr6.2:21447852-21447871 None:intergenic 30.0%
ATATGGATGATGAATAGTGT+AGG + chr6.2:21448461-21448480 None:intergenic 30.0%
CATTCATATTCTTAGAACTG+GGG + chr6.2:21447648-21447667 None:intergenic 30.0%
CTTAATCTTGATAAATCCAC+TGG - chr6.2:21446843-21446862 MS.gene069844:CDS 30.0%
CTTCAGTATGTACATAAGAA+TGG - chr6.2:21447879-21447898 MS.gene069844:CDS 30.0%
TAAAACTTGCAGTATCTAAG+TGG - chr6.2:21447279-21447298 MS.gene069844:intron 30.0%
TACAAAGGGTTTCATATTGA+TGG - chr6.2:21449332-21449351 MS.gene069844:intron 30.0%
TCAAGAACATCAATCAGTTA+GGG - chr6.2:21449189-21449208 MS.gene069844:intron 30.0%
TGTGGATGATATTCCAATAA+GGG - chr6.2:21449163-21449182 MS.gene069844:intron 30.0%
TTATGATCATTAGAGTCAAG+TGG + chr6.2:21448544-21448563 None:intergenic 30.0%
TTCAAGAACATCAATCAGTT+AGG - chr6.2:21449188-21449207 MS.gene069844:intron 30.0%
TTGACGATGTGATATTGTTT+AGG - chr6.2:21447222-21447241 MS.gene069844:intron 30.0%
TTGTGGATGATATTCCAATA+AGG - chr6.2:21449162-21449181 MS.gene069844:intron 30.0%
TTTATGGAATGCTGATGATT+GGG - chr6.2:21449253-21449272 MS.gene069844:intron 30.0%
! TATCTGTGATAAGCTTTTGT+AGG + chr6.2:21448348-21448367 None:intergenic 30.0%
! TTGAACTGATCTAAAGTTTG+AGG + chr6.2:21448489-21448508 None:intergenic 30.0%
! TTTTTGTACATAACAGGTAC+TGG - chr6.2:21447823-21447842 MS.gene069844:intron 30.0%
!! TCCAAAGGGTCTTATTTATT+TGG - chr6.2:21447853-21447872 MS.gene069844:CDS 30.0%
!!! GAGATAGATTTTGAGTTCTT+AGG - chr6.2:21448231-21448250 MS.gene069844:intron 30.0%
ACATCAAGGTCATGAAATTC+AGG + chr6.2:21449419-21449438 None:intergenic 35.0%
AGAGTTAACGCATCAACATT+TGG + chr6.2:21448822-21448841 None:intergenic 35.0%
ATATGATCATAAGCCCAAGT+AGG + chr6.2:21446792-21446811 None:intergenic 35.0%
ATCACAGATATTCTGTGTTG+TGG - chr6.2:21448358-21448377 MS.gene069844:CDS 35.0%
ATGTACATAAGAATGGTACC+TGG - chr6.2:21447886-21447905 MS.gene069844:CDS 35.0%
ATGTTCTTGAACACCCTTAT+TGG + chr6.2:21449179-21449198 None:intergenic 35.0%
CAAGAACATCAATCAGTTAG+GGG - chr6.2:21449190-21449209 MS.gene069844:intron 35.0%
GTTTATGGAATGCTGATGAT+TGG - chr6.2:21449252-21449271 MS.gene069844:intron 35.0%
TATGGAATGCAGTTTCTTTG+TGG - chr6.2:21449145-21449164 MS.gene069844:intron 35.0%
TCGTAATTATGTGCCTACTT+GGG - chr6.2:21446776-21446795 MS.gene069844:CDS 35.0%
! AAAAAACGTAGGCTTTTGAG+AGG + chr6.2:21448794-21448813 None:intergenic 35.0%
! CAAACAAATGTTTTCACAGG+TGG - chr6.2:21448282-21448301 MS.gene069844:intron 35.0%
! CTCATCATGTTCTGCATTTT+GGG + chr6.2:21448214-21448233 None:intergenic 35.0%
! GCAAAATTTTGTGACACACA+AGG - chr6.2:21449374-21449393 MS.gene069844:CDS 35.0%
! TCTCATCATGTTCTGCATTT+TGG + chr6.2:21448215-21448234 None:intergenic 35.0%
!! AAAAACGTAGGCTTTTGAGA+GGG + chr6.2:21448793-21448812 None:intergenic 35.0%
!! ATTTTGGGAAGATAACTGCA+TGG + chr6.2:21448199-21448218 None:intergenic 35.0%
ACACACAAGGAAAAAGATGG+TGG - chr6.2:21449387-21449406 MS.gene069844:CDS 40.0%
ACTCCTGTTGATGTTCCATT+TGG - chr6.2:21446753-21446772 MS.gene069844:CDS 40.0%
AGTGGAGAAGGAAAATGATG+AGG + chr6.2:21448526-21448545 None:intergenic 40.0%
ATGACCTTGATGTTGCTCAA+TGG - chr6.2:21449426-21449445 MS.gene069844:CDS 40.0%
CACACAAGGAAAAAGATGGT+GGG - chr6.2:21449388-21449407 MS.gene069844:CDS 40.0%
CCTTCATAGCCTCTTACAAA+GGG - chr6.2:21449318-21449337 MS.gene069844:intron 40.0%
CCTTTGTAAGAGGCTATGAA+GGG + chr6.2:21449320-21449339 None:intergenic 40.0%
CGCAAGTTTGTGACCTAAAT+AGG + chr6.2:21447039-21447058 None:intergenic 40.0%
GGCACATAATTACGACCAAA+TGG + chr6.2:21446771-21446790 None:intergenic 40.0%
GTCGTAATTATGTGCCTACT+TGG - chr6.2:21446775-21446794 MS.gene069844:CDS 40.0%
GTGACACACAAGGAAAAAGA+TGG - chr6.2:21449384-21449403 MS.gene069844:CDS 40.0%
TACACTCTTGAGGAACTTGA+GGG + chr6.2:21449517-21449536 None:intergenic 40.0%
TCAATGGCAAAGGCTAAGAT+GGG - chr6.2:21449442-21449461 MS.gene069844:CDS 40.0%
TCATTAGAGTCAAGTGGAGA+AGG + chr6.2:21448538-21448557 None:intergenic 40.0%
TTGATGTTGCTCAATGGCAA+AGG - chr6.2:21449432-21449451 MS.gene069844:CDS 40.0%
TTTGCCATTGAGCAACATCA+AGG + chr6.2:21449433-21449452 None:intergenic 40.0%
! AATGTTTTCACAGGTGGCAA+AGG - chr6.2:21448288-21448307 MS.gene069844:intron 40.0%
! CTTCTTTTGCTGCAAATCCA+AGG - chr6.2:21446730-21446749 MS.gene069844:CDS 40.0%
!! GTGGATTGGAGAAAACAGAT+TGG - chr6.2:21449285-21449304 MS.gene069844:intron 40.0%
CCCTTCATAGCCTCTTACAA+AGG - chr6.2:21449317-21449336 MS.gene069844:intron 45.0%
CCCTTTGTAAGAGGCTATGA+AGG + chr6.2:21449321-21449340 None:intergenic 45.0%
CGACCAAATGGAACATCAAC+AGG + chr6.2:21446759-21446778 None:intergenic 45.0%
CTCAATGGCAAAGGCTAAGA+TGG - chr6.2:21449441-21449460 MS.gene069844:CDS 45.0%
CTGTCTCTTGTACACTCTTG+AGG + chr6.2:21449527-21449546 None:intergenic 45.0%
GAGTTCTTAGGGAACAGAAC+AGG - chr6.2:21448243-21448262 MS.gene069844:intron 45.0%
GTACACTCTTGAGGAACTTG+AGG + chr6.2:21449518-21449537 None:intergenic 45.0%
!! GTACTGGCTTCCAATCCAAA+GGG - chr6.2:21447839-21447858 MS.gene069844:CDS 45.0%
!!! TTATTTTAAATCTATAATAT+TGG - chr6.2:21447135-21447154 MS.gene069844:intron 5.0%
ACTGTTCCAGCTGAATCACC+AGG + chr6.2:21447907-21447926 None:intergenic 50.0%
ATGCTGATGATTGGGCCACA+AGG - chr6.2:21449261-21449280 MS.gene069844:intron 50.0%
ATGGTACCTGGTGATTCAGC+TGG - chr6.2:21447898-21447917 MS.gene069844:CDS 50.0%
GGAACATCAACAGGAGTCCT+TGG + chr6.2:21446750-21446769 None:intergenic 50.0%
TGCTGATGATTGGGCCACAA+GGG - chr6.2:21449262-21449281 MS.gene069844:intron 50.0%
TTTCTCCAATCCACCCCTTG+TGG + chr6.2:21449279-21449298 None:intergenic 50.0%
!! AGAGGCTATGAAGGGTGCTT+TGG + chr6.2:21449312-21449331 None:intergenic 50.0%
!! GGTACTGGCTTCCAATCCAA+AGG - chr6.2:21447838-21447857 MS.gene069844:CDS 50.0%
GCTGATGATTGGGCCACAAG+GGG - chr6.2:21449263-21449282 MS.gene069844:intron 55.0%
GATGATTGGGCCACAAGGGG+TGG - chr6.2:21449266-21449285 MS.gene069844:intron 60.0%
TTGGGCCACAAGGGGTGGAT+TGG - chr6.2:21449271-21449290 MS.gene069844:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 21446678 21449556 21446678 ID=MS.gene069844
chr6.2 mRNA 21446678 21449556 21446678 ID=MS.gene069844.t1;Parent=MS.gene069844
chr6.2 exon 21449370 21449556 21449370 ID=MS.gene069844.t1.exon1;Parent=MS.gene069844.t1
chr6.2 CDS 21449370 21449556 21449370 ID=cds.MS.gene069844.t1;Parent=MS.gene069844.t1
chr6.2 exon 21448295 21448395 21448295 ID=MS.gene069844.t1.exon2;Parent=MS.gene069844.t1
chr6.2 CDS 21448295 21448395 21448295 ID=cds.MS.gene069844.t1;Parent=MS.gene069844.t1
chr6.2 exon 21447837 21448030 21447837 ID=MS.gene069844.t1.exon3;Parent=MS.gene069844.t1
chr6.2 CDS 21447837 21448030 21447837 ID=cds.MS.gene069844.t1;Parent=MS.gene069844.t1
chr6.2 exon 21446678 21447077 21446678 ID=MS.gene069844.t1.exon4;Parent=MS.gene069844.t1
chr6.2 CDS 21446678 21447077 21446678 ID=cds.MS.gene069844.t1;Parent=MS.gene069844.t1
Gene Sequence

>MS.gene069844

ATGAATTCTTCTTTGTGGATTTGTTTGATTTTGTTGTCATCATTTGTATATGCTTCTTTTGCTGCAAATCCAAGGACTCCTGTTGATGTTCCATTTGGTCGTAATTATGTGCCTACTTGGGCTTATGATCATATCAAATACTTAAATGGTGGTTCTGAAATTCTGCTTAATCTTGATAAATCCACTGGTATGCTATTATCATTTTTAAATCAAGAAATTTTATTAGAACAATATTTTTTTTTTATAGGTTTCTATGGTGATGTGATCTTATTTGAGTTGCTAGCGAACACTATGTGATTTTTCTTACTTATTTACATTTTTTTGGCACACGTCAAAAGAACTTGCAACATTTTAATGTCCTATTTAGGTCACAAACTTGCGTTATCAAGTTCAGTTTATTATTTACATTTTTATTTTGTTTCTCTACTTTGACTTGTTACGACTTTAGTTTCTTATTTTATTTTAAATCTATAATATTGGTTCTACAATTTTCAAAATGTTTGATAAGCTGTGTAGTAAGTGATAAACTTATGCGGCAAGACACTTGACGATGTGATATTGTTTAGGTCAATTCTTATTTAACAACTAATTTTCAATCTATTAAAACTTGCAGTATCTAAGTGGTTTATCAACTAACAACTCACTTTAACTAATGTTATCAACTTTATCACAAATATAAAAATAGGAAAATAAAAACTAATGAGACAAAATATGTAGACAAAAATTGTATTTAATCCTTATTACTACTTTTTTTTTTTCCTTACATCAACATTTATAAGGAATGTACTTTTATAGGGTGTAAAATATGGAGTTGACTTTTTATTTTAATTTTTTGTATTCAATTATCAATACTCTTTATCTTTTTATCCTCTCTATTTCTTTTTATTTCAAAATAAATTAGAGGGTCCCAAAAATAGAGAGTTTTATTATTATGAATTTTGGTAGATAAAAGCTTAATTAATTATGTCCCCAGTTCTAAGAATATGAATGTATACACTGTAAACTTCTCTTCAAAAATACAAAAAAGTATACACTATTTATATTTTCTTAGAAAAACTAAGAGGTTTTTTACTCATAGTTTTCCTTTTCCTAATTGTCTATTAGTTATACCTAATAAAACTCATTTTTGTTAAATATCAATGCAATTTTTGTACATAACAGGTACTGGCTTCCAATCCAAAGGGTCTTATTTATTTGGTCACTTCAGTATGTACATAAGAATGGTACCTGGTGATTCAGCTGGAACAGTCACTGCTTTCTATGTAAGACAAATATTTCTTTTGTATTATTTTATTCTATGATTTGATTTATATATACCATTGGTAAAAAATAATTACATCATTGATCAATCATAACCGTCAAATTATTAAACATATTTGACTTTAATCATAGCAATTTTGAAAATCACACATATGATTGATTGTAATTTGTTAACAATATTTTTTTCAGACTATCGTATAAAAAAATTAAACTCTTATTTTATTGTTTCACCTAACTTATTTTGACTTTACATTGGTACCATGCAGTTATCTTCCCAAAATGCAGAACATGATGAGATAGATTTTGAGTTCTTAGGGAACAGAACAGGTCAACCATACATTTTACAAACAAATGTTTTCACAGGTGGCAAAGGTGATAGAGAACAAAGAATTTATCTTTGGTTTGATCCTACAAAAGCTTATCACAGATATTCTGTGTTGTGGAACATGTTCCAAATTGTGTAAGTACTTATTAATTCTTTATTATGATCTCATCATTCACATAATCAATAATAATTTTACCTACACTATTCATCATCCATATTTTTACCTCAAACTTTAGATCAGTTCAATTTTAGGACATATACCTCATCATTTTCCTTCTCCACTTGACTCTAATGATCATAATAATCTTTATGATAAAGAATTACCAAGAAAGATAATAATGTTTTTGTTTCTTACAAATTAATTGTTACCAAAATTACATTCTTTATAACAAATATAATCTTGATTTTAAAAATGTTTTTTTTTTTCTAATATAAGAAGCTGTATTTATTTGCTTATAACAAGTAATCTAATTTTAATAAGTAGAGTAAATGAAAAAGAATATTAGTAACAAAGTATTAATGTTTATCCCTCTCAAAAGCCTACGTTTTTTTTAATCCAAATGTTGATGCGTTAACTCTTATAAATTTTGTTTTGAATATAAATGAAGTAATTAATTTGCGTTAACTCTTAGATAATTTTATTTAATTTTCTTAATATCATAAAAAGCAATGAATTTTATTTTCTAAATTATCGTTTAAGGGAAATTGTTCTATAAAATAAAAAGGTTATTACAATATAATGATATATAAGAAATAATACAAGTAAATAAACAAAAATTAGTTGTTGTTTATTTATATTTTAAACCTTTTAACATGATTTTTGTTGTTGTTTATATTTCAATATTGAGTTGTAGTCTATATTCTCTCTTATAAAAACTCAAATATGGAATGCAGTTTCTTTGTGGATGATATTCCAATAAGGGTGTTCAAGAACATCAATCAGTTAGGGGTAAAATACCCATTTAACCAACCAATGAAAATATACAATAGTTTATGGAATGCTGATGATTGGGCCACAAGGGGTGGATTGGAGAAAACAGATTGGTCCAAAGCACCCTTCATAGCCTCTTACAAAGGGTTTCATATTGATGGTTGTGAAGCTTCTGTGAATGCAAAATTTTGTGACACACAAGGAAAAAGATGGTGGGATCAACCTGAATTTCATGACCTTGATGTTGCTCAATGGCAAAGGCTAAGATGGGTGCGTCAAAAATACACAATTTATAACTATTGCAACGATCGTAAACGTTACCCTCAAGTTCCTCAAGAGTGTACAAGAGACAGAGACATTTAA

Protein sequence

>MS.gene069844.t1

MNSSLWICLILLSSFVYASFAANPRTPVDVPFGRNYVPTWAYDHIKYLNGGSEILLNLDKSTGTGFQSKGSYLFGHFSMYIRMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMFQIVFFVDDIPIRVFKNINQLGVKYPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFHDLDVAQWQRLRWVRQKYTIYNYCNDRKRYPQVPQECTRDRDI