AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72278

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72278.t1 MTR_7g084760 98.294 293 5 0 1 293 1 293 0.0 607
MS.gene72278.t1 MTR_7g084770 97.611 293 7 0 1 293 1 293 0.0 605
MS.gene72278.t1 MTR_7g084750 85.324 293 43 0 1 293 1 293 0.0 543
MS.gene72278.t1 MTR_6g033055 82.594 293 51 0 1 293 1 293 0.0 521
MS.gene72278.t1 MTR_6g033085 81.570 293 54 0 1 293 1 293 0.0 515
MS.gene72278.t1 MTR_2g089140 50.172 291 124 4 7 289 11 288 5.21e-103 303
MS.gene72278.t1 MTR_4g097700 54.864 257 114 2 32 287 69 324 4.46e-102 301
MS.gene72278.t1 MTR_4g097640 54.864 257 114 2 32 287 32 287 6.34e-102 300
MS.gene72278.t1 MTR_4g097670 54.864 257 114 2 32 287 32 287 6.34e-102 300
MS.gene72278.t1 MTR_3g084630 52.055 292 128 3 1 291 1 281 2.63e-101 298
MS.gene72278.t1 MTR_4g128410 52.941 289 122 4 3 288 4 281 2.94e-101 298
MS.gene72278.t1 MTR_4g045853 49.310 290 131 4 6 287 7 288 4.15e-101 298
MS.gene72278.t1 MTR_3g084620 53.169 284 116 4 9 291 14 281 7.50e-101 297
MS.gene72278.t1 MTR_8g081040 52.448 286 120 5 5 289 13 283 1.04e-99 294
MS.gene72278.t1 MTR_7g093530 52.817 284 120 4 7 287 7 279 3.76e-97 287
MS.gene72278.t1 MTR_4g128580 54.924 264 107 3 32 287 26 285 5.75e-96 285
MS.gene72278.t1 MTR_4g128570 51.064 282 120 4 7 287 8 272 2.02e-94 280
MS.gene72278.t1 MTR_1g105900 47.719 285 144 3 5 287 10 291 2.36e-94 281
MS.gene72278.t1 MTR_8g102220 48.464 293 126 5 1 291 1 270 1.04e-93 278
MS.gene72278.t1 MTR_1g105495 48.966 290 143 3 3 288 7 295 3.33e-93 278
MS.gene72278.t1 MTR_6g088320 48.864 264 129 4 28 287 22 283 3.37e-93 278
MS.gene72278.t1 MTR_4g126920 52.490 261 115 3 32 287 25 281 1.97e-92 275
MS.gene72278.t1 MTR_8g102910 47.872 282 134 6 15 287 2 279 9.53e-91 271
MS.gene72278.t1 MTR_2g038860 51.698 265 115 3 32 287 26 286 5.43e-90 270
MS.gene72278.t1 MTR_2g038705 51.698 265 115 3 32 287 26 286 5.43e-90 270
MS.gene72278.t1 MTR_2g089140 54.667 225 94 2 73 289 1 225 1.32e-89 266
MS.gene72278.t1 MTR_4g128400 50.189 265 122 4 30 287 22 283 2.94e-89 268
MS.gene72278.t1 MTR_8g013055 48.263 259 133 1 29 287 28 285 1.03e-87 263
MS.gene72278.t1 MTR_4g128590 51.172 256 104 3 39 289 38 277 1.73e-83 253
MS.gene72278.t1 MTR_7g056090 45.296 287 143 6 3 288 9 282 7.04e-80 243
MS.gene72278.t1 MTR_5g091730 48.548 241 117 2 50 289 46 280 2.12e-79 243
MS.gene72278.t1 MTR_3g089540 47.177 248 118 3 51 293 49 288 2.26e-79 242
MS.gene72278.t1 MTR_2g049030 42.254 284 151 9 7 288 5 277 1.62e-69 217
MS.gene72278.t1 MTR_2g049130 43.841 276 144 9 8 277 1 271 3.79e-67 211
MS.gene72278.t1 MTR_5g029100 37.313 268 156 5 30 287 40 305 4.71e-59 192
MS.gene72278.t1 MTR_4g057450 38.095 273 152 7 23 287 41 304 1.58e-58 189
MS.gene72278.t1 MTR_8g064180 33.333 303 181 5 6 288 10 311 1.71e-57 187
MS.gene72278.t1 MTR_7g102260 37.410 278 146 7 31 287 21 291 2.01e-57 186
MS.gene72278.t1 MTR_1g063020 38.545 275 148 8 23 287 31 294 3.44e-57 186
MS.gene72278.t1 MTR_1g033420 36.519 293 173 6 5 290 8 294 5.70e-57 186
MS.gene72278.t1 MTR_2g095800 35.738 305 162 9 7 287 15 309 8.37e-57 185
MS.gene72278.t1 MTR_8g090100 36.059 269 155 6 30 287 19 281 1.08e-54 180
MS.gene72278.t1 MTR_5g029100 34.375 288 164 6 10 287 2 274 3.46e-53 176
MS.gene72278.t1 MTR_8g479340 35.484 186 59 3 103 287 10 135 3.83e-28 105
MS.gene72278.t1 MTR_8g032640 33.908 174 107 4 54 225 33 200 4.38e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72278.t1 AT5G13870 80.488 287 56 0 7 293 7 293 0.0 509
MS.gene72278.t1 AT5G13870 80.488 287 56 0 7 293 7 293 0.0 509
MS.gene72278.t1 AT5G13870 80.488 287 56 0 7 293 7 293 0.0 509
MS.gene72278.t1 AT2G06850 76.792 293 67 1 1 292 3 295 4.74e-176 488
MS.gene72278.t1 AT2G06850 80.952 231 44 0 62 292 5 235 3.56e-147 412
MS.gene72278.t1 AT5G65730 51.590 283 133 3 7 288 12 291 6.58e-106 310
MS.gene72278.t1 AT3G23730 56.061 264 112 2 32 291 27 290 1.51e-105 309
MS.gene72278.t1 AT4G14130 57.812 256 103 3 39 291 35 288 1.77e-103 304
MS.gene72278.t1 AT4G03210 50.172 291 136 3 5 293 7 290 9.83e-102 299
MS.gene72278.t1 AT4G37800 50.704 284 133 3 5 287 12 289 5.46e-101 298
MS.gene72278.t1 AT5G57550 50.173 289 137 3 1 288 1 283 8.94e-98 289
MS.gene72278.t1 AT5G57560 51.220 287 121 4 8 287 7 281 2.28e-97 288
MS.gene72278.t1 AT4G25810 51.408 284 123 5 10 287 9 283 5.57e-96 285
MS.gene72278.t1 AT4G30270 51.408 284 111 5 5 287 8 265 8.74e-95 281
MS.gene72278.t1 AT4G13090 48.797 291 144 3 1 288 1 289 1.82e-94 281
MS.gene72278.t1 AT5G57530 53.516 256 111 4 39 290 34 285 7.20e-94 279
MS.gene72278.t1 AT4G03210 55.411 231 101 1 65 293 32 262 1.44e-93 278
MS.gene72278.t1 AT5G57540 52.471 263 117 4 32 290 26 284 1.68e-93 278
MS.gene72278.t1 AT1G11545 50.352 284 131 4 10 287 20 299 2.28e-93 278
MS.gene72278.t1 AT5G48070 54.167 240 104 3 49 287 47 281 9.83e-90 268
MS.gene72278.t1 AT4G28850 45.517 290 147 5 7 291 8 291 2.18e-88 265
MS.gene72278.t1 AT2G14620 48.450 258 131 2 32 287 37 294 3.51e-88 265
MS.gene72278.t1 AT2G18800 47.794 272 123 4 32 287 28 296 1.15e-86 261
MS.gene72278.t1 AT4G25820 51.181 254 116 3 39 288 37 286 6.08e-86 259
MS.gene72278.t1 AT3G25050 47.510 261 130 4 30 287 33 289 1.56e-85 258
MS.gene72278.t1 AT4G13080 46.718 259 135 3 30 288 37 292 1.64e-85 258
MS.gene72278.t1 AT4G30290 53.982 226 98 3 63 287 56 276 6.25e-83 251
MS.gene72278.t1 AT1G65310 54.425 226 97 3 63 287 61 281 3.83e-82 249
MS.gene72278.t1 AT1G65310 54.425 226 97 3 63 287 83 303 4.00e-82 250
MS.gene72278.t1 AT4G30280 53.540 226 99 3 63 287 61 281 8.03e-82 248
MS.gene72278.t1 AT2G14620 49.160 238 119 2 52 287 7 244 1.43e-81 246
MS.gene72278.t1 AT2G14620 51.598 219 104 2 71 287 15 233 1.84e-79 241
MS.gene72278.t1 AT3G44990 42.264 265 136 7 31 287 38 293 2.62e-61 196
MS.gene72278.t1 AT1G32170 40.249 241 136 4 54 287 54 293 9.00e-59 191
MS.gene72278.t1 AT3G48580 39.922 258 139 5 30 287 32 273 2.79e-58 188
MS.gene72278.t1 AT1G14720 35.739 291 176 5 3 287 5 290 3.72e-57 187
MS.gene72278.t1 AT2G36870 40.244 246 132 5 52 289 61 299 3.13e-56 183
MS.gene72278.t1 AT4G18990 38.889 252 135 4 54 287 62 312 6.50e-55 182
MS.gene72278.t1 AT2G01850 38.430 242 143 3 51 287 50 290 2.71e-53 177
MS.gene72278.t1 AT1G10550 36.364 253 142 6 51 287 60 309 2.88e-52 174
MS.gene72278.t1 AT3G48580 39.381 226 122 4 62 287 4 214 1.11e-50 167
MS.gene72278.t1 AT4G18990 35.345 232 123 5 81 287 9 238 5.98e-43 149
MS.gene72278.t1 AT3G48580 34.884 258 132 6 30 287 32 253 6.14e-43 148
MS.gene72278.t1 AT2G36870 44.915 118 57 2 52 161 61 178 3.82e-28 107

Find 60 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATATACAATAGTTTA+TGG 0.145009 7.1:-20326355 MS.gene72278:CDS
ACAAAATGAATTCTTCATTT+TGG 0.155254 7.1:-20327366 None:intergenic
AAGAACAAAGGATCTTTCTT+TGG 0.288385 7.1:-20326641 MS.gene72278:CDS
TTCACAGATACTCCATTCTA+TGG 0.293190 7.1:-20326599 MS.gene72278:CDS
ATCAGTGCAATAGTTGTAAA+TGG 0.324527 7.1:+20326112 None:intergenic
GCATCAAGATCACGAAATTC+AGG 0.366582 7.1:+20326176 None:intergenic
CTGCCAAATGGTACATCAAC+TGG 0.374020 7.1:+20327283 None:intergenic
TTTACAACTATTGCACTGAT+AGG 0.375154 7.1:-20326109 MS.gene72278:CDS
TCCAAAGGTTCATACTTGTT+TGG 0.384057 7.1:-20326928 MS.gene72278:CDS
TACAAAGGTTTCCACATTGA+TGG 0.385031 7.1:-20326260 MS.gene72278:CDS
GCCTGCTATGAATGGTGCTT+TGG 0.386418 7.1:+20326283 None:intergenic
GTTTATGGAATGCAGATGAT+TGG 0.387916 7.1:-20326340 MS.gene72278:CDS
GATCATATCAAATACTTCAA+TGG 0.398017 7.1:-20327235 MS.gene72278:CDS
ACCAAACAAGTATGAACCTT+TGG 0.401617 7.1:+20326927 None:intergenic
TTGGGCCACAAGAGGTGGTT+TGG 0.402579 7.1:-20326321 MS.gene72278:CDS
ACATTTGTTTGTAAAATGTA+AGG 0.414616 7.1:+20326687 None:intergenic
GAGTTCTTGGGGAACAGAAC+AGG 0.419669 7.1:-20326714 MS.gene72278:CDS
CTGGTACATGTTCCATAGAA+TGG 0.433083 7.1:+20326587 None:intergenic
CAAGTAGTACTTACACAATC+TGG 0.439811 7.1:+20326568 None:intergenic
AAGCCAGTTGATGTACCATT+TGG 0.454819 7.1:-20327286 MS.gene72278:CDS
TTACAAACAAATGTGTTCAC+TGG 0.454841 7.1:-20326678 MS.gene72278:CDS
CTCAATGGCGTAGACTAAGA+TGG 0.467350 7.1:-20326151 MS.gene72278:CDS
GGGTAATAGTTTCTGCCAAA+TGG 0.469874 7.1:+20327271 None:intergenic
TTTATGGAATGCAGATGATT+GGG 0.473254 7.1:-20326339 MS.gene72278:CDS
GTGATCTTGATGCTGCTCAA+TGG 0.483264 7.1:-20326166 MS.gene72278:CDS
TTTCAGTATGAACATTAAGA+TGG 0.493779 7.1:-20326902 MS.gene72278:CDS
ATGGTCCCTGGTGATTCAGC+TGG 0.509324 7.1:-20326883 MS.gene72278:CDS
TTGCATTCTGGTGGAACTTG+AGG 0.515049 7.1:+20326077 None:intergenic
GCAGAAACTATTACCCCACT+TGG 0.516801 7.1:-20327264 MS.gene72278:CDS
TGTACTTATCAAGATGAAGT+TGG 0.517285 7.1:+20327200 None:intergenic
TTTCTCCAAACCACCTCTTG+TGG 0.522277 7.1:+20326316 None:intergenic
GGTACATCAACTGGCTTACG+TGG 0.534251 7.1:+20327292 None:intergenic
CCTTTGTAGCCTGCTATGAA+TGG 0.547075 7.1:+20326275 None:intergenic
CAAACAAATGTGTTCACTGG+TGG 0.551578 7.1:-20326675 MS.gene72278:CDS
TCCAAAGCACCATTCATAGC+AGG 0.568617 7.1:-20326284 MS.gene72278:CDS
GTGCAACACAGGGTAAAAGA+TGG 0.568853 7.1:-20326208 MS.gene72278:CDS
GTGGTTTGGAGAAAACAGAT+TGG 0.570318 7.1:-20326307 MS.gene72278:CDS
CCATTCATAGCAGGCTACAA+AGG 0.570384 7.1:-20326275 MS.gene72278:CDS
ATGAACATTAAGATGGTCCC+TGG 0.574606 7.1:-20326895 MS.gene72278:CDS
CAGAAACTATTACCCCACTT+GGG 0.575217 7.1:-20327263 MS.gene72278:CDS
GATGATTGGGCCACAAGAGG+TGG 0.580281 7.1:-20326326 MS.gene72278:CDS
TCAATGGCGTAGACTAAGAT+GGG 0.582539 7.1:-20326150 MS.gene72278:CDS
CAACACAGGGTAAAAGATGG+TGG 0.587332 7.1:-20326205 MS.gene72278:CDS
CTTCATCTTGATAAGTACAC+TGG 0.589751 7.1:-20327196 MS.gene72278:intron
CGATGAACATTTAAATGTCA+CGG 0.595421 7.1:+20326048 None:intergenic
GCAGATGATTGGGCCACAAG+AGG 0.605501 7.1:-20326329 MS.gene72278:CDS
AATGTGTTCACTGGTGGACA+AGG 0.617308 7.1:-20326669 MS.gene72278:CDS
GTACATCAACTGGCTTACGT+GGG 0.619680 7.1:+20327293 None:intergenic
ACTGTTCCAGCTGAATCACC+AGG 0.622053 7.1:+20326877 None:intergenic
CATATCAAATACTTCAATGG+TGG 0.624848 7.1:-20327232 MS.gene72278:CDS
TACATCAACTGGCTTACGTG+GGG 0.630956 7.1:+20327294 None:intergenic
ACAAAACTTCGCATTAACAG+AGG 0.641098 7.1:+20326229 None:intergenic
AACACAGGGTAAAAGATGGT+GGG 0.641505 7.1:-20326204 MS.gene72278:CDS
ATATGATCAAAAGCCCAAGT+GGG 0.644752 7.1:+20327250 None:intergenic
GATATGATCAAAAGCCCAAG+TGG 0.646471 7.1:+20327249 None:intergenic
GACAAGGTAACAAAGAACAA+AGG 0.658573 7.1:-20326653 MS.gene72278:CDS
ACATCAACTGGCTTACGTGG+GGG 0.680439 7.1:+20327295 None:intergenic
TATGATCAAAAGCCCAAGTG+GGG 0.682880 7.1:+20327251 None:intergenic
AGGATTCACAACCATCAATG+TGG 0.698159 7.1:+20326249 None:intergenic
CTGTTCCAGCTGAATCACCA+GGG 0.721487 7.1:+20326878 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAATTACTCAAATT+TGG + chr7.1:20326937-20326956 None:intergenic 10.0%
!!! GAAAAAACTTTAATTTTTTT+AGG + chr7.1:20326588-20326607 None:intergenic 10.0%
!! TAAAAAGTAAAAAACTATTG+TGG - chr7.1:20326910-20326929 MS.gene72278:CDS 15.0%
!! TGAAAATATACAATAGTTTA+TGG - chr7.1:20327064-20327083 MS.gene72278:intron 15.0%
!!! AAACTATTGTATATTTTCAT+TGG + chr7.1:20327063-20327082 None:intergenic 15.0%
!!! AATTTTTTTGAAACTATGAT+TGG - chr7.1:20326954-20326973 MS.gene72278:intron 15.0%
!! ACATTTGTTTGTAAAATGTA+AGG + chr7.1:20326735-20326754 None:intergenic 20.0%
!!! TATTGTATATTTTCATTGGT+TGG + chr7.1:20327059-20327078 None:intergenic 20.0%
!!! TTTACTTTTTAGTTAGATCA+GGG + chr7.1:20326901-20326920 None:intergenic 20.0%
!!! TTTCTAACTACTTTTTTAAC+AGG - chr7.1:20326455-20326474 MS.gene72278:intron 20.0%
!!! TTTTACTTTTTAGTTAGATC+AGG + chr7.1:20326902-20326921 None:intergenic 20.0%
! CTGTAAAGTAATCACAAAAA+AGG + chr7.1:20326646-20326665 None:intergenic 25.0%
! GATCATATCAAATACTTCAA+TGG - chr7.1:20326184-20326203 MS.gene72278:CDS 25.0%
! TTTCAGTATGAACATTAAGA+TGG - chr7.1:20326517-20326536 MS.gene72278:intron 25.0%
!! TAGTACGAGTTTAAAACTAA+GGG + chr7.1:20326424-20326443 None:intergenic 25.0%
AAGAACAAAGGATCTTTCTT+TGG - chr7.1:20326778-20326797 MS.gene72278:intron 30.0%
ATCAGTGCAATAGTTGTAAA+TGG + chr7.1:20327310-20327329 None:intergenic 30.0%
CATATCAAATACTTCAATGG+TGG - chr7.1:20326187-20326206 MS.gene72278:CDS 30.0%
TGTACTTATCAAGATGAAGT+TGG + chr7.1:20326222-20326241 None:intergenic 30.0%
TTACAAACAAATGTGTTCAC+TGG - chr7.1:20326741-20326760 MS.gene72278:CDS 30.0%
TTTATGGAATGCAGATGATT+GGG - chr7.1:20327080-20327099 MS.gene72278:intron 30.0%
! GTAGTACGAGTTTAAAACTA+AGG + chr7.1:20326425-20326444 None:intergenic 30.0%
! TATCTGTGAAACTCTTTTGT+TGG + chr7.1:20326810-20326829 None:intergenic 30.0%
! TTTACAACTATTGCACTGAT+AGG - chr7.1:20327310-20327329 MS.gene72278:CDS 30.0%
!! ATTTTCATTGGTTGGTCAAA+TGG + chr7.1:20327051-20327070 None:intergenic 30.0%
!! TTTTCATTGGTTGGTCAAAT+GGG + chr7.1:20327050-20327069 None:intergenic 30.0%
!!! ACTACTTTTTTAACAGGTAC+TGG - chr7.1:20326461-20326480 MS.gene72278:intron 30.0%
!!! AGATAGATTTTGAGTTCTTG+GGG - chr7.1:20326694-20326713 MS.gene72278:CDS 30.0%
!!! ATTGGTTTGCAGATTTTTTG+TGG - chr7.1:20326972-20326991 MS.gene72278:intron 30.0%
!!! CTGTTTTTGAACACTCTTAT+TGG + chr7.1:20327006-20327025 None:intergenic 30.0%
!!! GAGATAGATTTTGAGTTCTT+GGG - chr7.1:20326693-20326712 MS.gene72278:CDS 30.0%
!!! TGAGATAGATTTTGAGTTCT+TGG - chr7.1:20326692-20326711 MS.gene72278:CDS 30.0%
AACGCTTGTGTATAAGCTAT+AGG - chr7.1:20326340-20326359 MS.gene72278:CDS 35.0%
ACAAAACTTCGCATTAACAG+AGG + chr7.1:20327193-20327212 None:intergenic 35.0%
ACCAAACAAGTATGAACCTT+TGG + chr7.1:20326495-20326514 None:intergenic 35.0%
ATATGATCAAAAGCCCAAGT+GGG + chr7.1:20326172-20326191 None:intergenic 35.0%
CAAGTAGTACTTACACAATC+TGG + chr7.1:20326854-20326873 None:intergenic 35.0%
CTTCATCTTGATAAGTACAC+TGG - chr7.1:20326223-20326242 MS.gene72278:CDS 35.0%
GACAAGGTAACAAAGAACAA+AGG - chr7.1:20326766-20326785 MS.gene72278:intron 35.0%
GTTTATGGAATGCAGATGAT+TGG - chr7.1:20327079-20327098 MS.gene72278:intron 35.0%
TACAAAGGTTTCCACATTGA+TGG - chr7.1:20327159-20327178 MS.gene72278:intron 35.0%
TCCAAAGGTTCATACTTGTT+TGG - chr7.1:20326491-20326510 MS.gene72278:intron 35.0%
TTCAAAAACAGCAAGGACTT+AGG - chr7.1:20327015-20327034 MS.gene72278:intron 35.0%
TTCACAGATACTCCATTCTA+TGG - chr7.1:20326820-20326839 MS.gene72278:intron 35.0%
!! AAGAGTGTTCAAAAACAGCA+AGG - chr7.1:20327008-20327027 MS.gene72278:intron 35.0%
!! TTTTCTATTTAGCTCGTGCT+CGG - chr7.1:20326270-20326289 MS.gene72278:CDS 35.0%
AACACAGGGTAAAAGATGGT+GGG - chr7.1:20327215-20327234 MS.gene72278:CDS 40.0%
AGGATTCACAACCATCAATG+TGG + chr7.1:20327173-20327192 None:intergenic 40.0%
ATGAACATTAAGATGGTCCC+TGG - chr7.1:20326524-20326543 MS.gene72278:intron 40.0%
CAAACAAATGTGTTCACTGG+TGG - chr7.1:20326744-20326763 MS.gene72278:CDS 40.0%
CAGAAACTATTACCCCACTT+GGG - chr7.1:20326156-20326175 MS.gene72278:CDS 40.0%
CTGGTACATGTTCCATAGAA+TGG + chr7.1:20326835-20326854 None:intergenic 40.0%
GATATGATCAAAAGCCCAAG+TGG + chr7.1:20326173-20326192 None:intergenic 40.0%
GCATCAAGATCACGAAATTC+AGG + chr7.1:20327246-20327265 None:intergenic 40.0%
GGGTAATAGTTTCTGCCAAA+TGG + chr7.1:20326151-20326170 None:intergenic 40.0%
TATGATCAAAAGCCCAAGTG+GGG + chr7.1:20326171-20326190 None:intergenic 40.0%
TCAATGGCGTAGACTAAGAT+GGG - chr7.1:20327269-20327288 MS.gene72278:CDS 40.0%
! AAGCCAGTTGATGTACCATT+TGG - chr7.1:20326133-20326152 MS.gene72278:CDS 40.0%
! CGAGTTTAAAACTAAGGGCA+TGG + chr7.1:20326419-20326438 None:intergenic 40.0%
! GTGGTTTGGAGAAAACAGAT+TGG - chr7.1:20327112-20327131 MS.gene72278:intron 40.0%
!!! GGTACTGGTTTTCAATCCAA+AGG - chr7.1:20326476-20326495 MS.gene72278:intron 40.0%
CAACACAGGGTAAAAGATGG+TGG - chr7.1:20327214-20327233 MS.gene72278:CDS 45.0%
CCATTCATAGCAGGCTACAA+AGG - chr7.1:20327144-20327163 MS.gene72278:intron 45.0%
CCTTTGTAGCCTGCTATGAA+TGG + chr7.1:20327147-20327166 None:intergenic 45.0%
CTCAATGGCGTAGACTAAGA+TGG - chr7.1:20327268-20327287 MS.gene72278:CDS 45.0%
CTGCCAAATGGTACATCAAC+TGG + chr7.1:20326139-20326158 None:intergenic 45.0%
GCAGAAACTATTACCCCACT+TGG - chr7.1:20326155-20326174 MS.gene72278:CDS 45.0%
GTGATCTTGATGCTGCTCAA+TGG - chr7.1:20327253-20327272 MS.gene72278:CDS 45.0%
GTGCAACACAGGGTAAAAGA+TGG - chr7.1:20327211-20327230 MS.gene72278:CDS 45.0%
TTGCATTCTGGTGGAACTTG+AGG + chr7.1:20327345-20327364 None:intergenic 45.0%
TTTCTCCAAACCACCTCTTG+TGG + chr7.1:20327106-20327125 None:intergenic 45.0%
! AATGTGTTCACTGGTGGACA+AGG - chr7.1:20326750-20326769 MS.gene72278:CDS 45.0%
! GTACATCAACTGGCTTACGT+GGG + chr7.1:20326129-20326148 None:intergenic 45.0%
! TACATCAACTGGCTTACGTG+GGG + chr7.1:20326128-20326147 None:intergenic 45.0%
! TCACGGTCTCTTTTGCATTC+TGG + chr7.1:20327357-20327376 None:intergenic 45.0%
! TCCAAAGCACCATTCATAGC+AGG - chr7.1:20327135-20327154 MS.gene72278:intron 45.0%
!! GCGAAGTTTTGTGCAACACA+GGG - chr7.1:20327201-20327220 MS.gene72278:CDS 45.0%
!! TGCGAAGTTTTGTGCAACAC+AGG - chr7.1:20327200-20327219 MS.gene72278:CDS 45.0%
ACTGTTCCAGCTGAATCACC+AGG + chr7.1:20326545-20326564 None:intergenic 50.0%
CTGTTCCAGCTGAATCACCA+GGG + chr7.1:20326544-20326563 None:intergenic 50.0%
GAGTTCTTGGGGAACAGAAC+AGG - chr7.1:20326705-20326724 MS.gene72278:CDS 50.0%
GCCTGCTATGAATGGTGCTT+TGG + chr7.1:20327139-20327158 None:intergenic 50.0%
! ACATCAACTGGCTTACGTGG+GGG + chr7.1:20326127-20326146 None:intergenic 50.0%
! CGGTCTCTTTTGCATTCTGG+TGG + chr7.1:20327354-20327373 None:intergenic 50.0%
! GGTACATCAACTGGCTTACG+TGG + chr7.1:20326130-20326149 None:intergenic 50.0%
ATGGTCCCTGGTGATTCAGC+TGG - chr7.1:20326536-20326555 MS.gene72278:intron 55.0%
GATGATTGGGCCACAAGAGG+TGG - chr7.1:20327093-20327112 MS.gene72278:intron 55.0%
GCAGATGATTGGGCCACAAG+AGG - chr7.1:20327090-20327109 MS.gene72278:intron 55.0%
TTGGGCCACAAGAGGTGGTT+TGG - chr7.1:20327098-20327117 MS.gene72278:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 20326058 20327383 20326058 ID=MS.gene72278
chr7.1 mRNA 20326058 20327383 20326058 ID=MS.gene72278.t1;Parent=MS.gene72278
chr7.1 exon 20327197 20327383 20327197 ID=MS.gene72278.t1.exon1;Parent=MS.gene72278.t1
chr7.1 CDS 20327197 20327383 20327197 ID=cds.MS.gene72278.t1;Parent=MS.gene72278.t1
chr7.1 exon 20326864 20326964 20326864 ID=MS.gene72278.t1.exon2;Parent=MS.gene72278.t1
chr7.1 CDS 20326864 20326964 20326864 ID=cds.MS.gene72278.t1;Parent=MS.gene72278.t1
chr7.1 exon 20326582 20326775 20326582 ID=MS.gene72278.t1.exon3;Parent=MS.gene72278.t1
chr7.1 CDS 20326582 20326775 20326582 ID=cds.MS.gene72278.t1;Parent=MS.gene72278.t1
chr7.1 exon 20326058 20326457 20326058 ID=MS.gene72278.t1.exon4;Parent=MS.gene72278.t1
chr7.1 CDS 20326058 20326457 20326058 ID=cds.MS.gene72278.t1;Parent=MS.gene72278.t1
Gene Sequence

>MS.gene72278

ATGAATTCTTCATTTTGGACTCTATGTTTGATTTTAGCATCACTAGTCTCTTTTTCATTATGTGCTCCCCCACGTAAGCCAGTTGATGTACCATTTGGCAGAAACTATTACCCCACTTGGGCTTTTGATCATATCAAATACTTCAATGGTGGTTCAGAGATCCAACTTCATCTTGATAAGTACACTGGTTAGTGTTTAACACACTTCATAGCTTTTCTATTTAGCTCGTGCTCGGATAAACAACTTAATTTACAACTTATAATATAAACATTTATCATGATAAACGCTTGTGTATAAGCTATAGGAACATATCATAAATGATTATGCTAGTAGATATGCTATAATATGTCAAGTCAATCCATGCCCTTAGTTTTAAACTCGTACTACATTGTTCATTTTTCTAACTACTTTTTTAACAGGTACTGGTTTTCAATCCAAAGGTTCATACTTGTTTGGTCATTTCAGTATGAACATTAAGATGGTCCCTGGTGATTCAGCTGGAACAGTAACTGCTTTCTATGTATGTTCCTAAAAAAATTAAAGTTTTTTCATTTTGTTTCTATTTTTAGTATTTTGTTGTAATGACCTTTTTTGTGATTACTTTACAGCTATCTTCACAAAATGCTGAGCATGATGAGATAGATTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTACAAACAAATGTGTTCACTGGTGGACAAGGTAACAAAGAACAAAGGATCTTTCTTTGGTTTGATCCAACAAAAGAGTTTCACAGATACTCCATTCTATGGAACATGTACCAGATTGTGTAAGTACTACTTGATTCAACTATAGTATCATTCATTTCCCTGATCTAACTAAAAAGTAAAAAACTATTGTGGTCCAAATTTGAGTAATTAATTAATTTTTTTGAAACTATGATTGGTTTGCAGATTTTTTGTGGATGATGTTCCAATAAGAGTGTTCAAAAACAGCAAGGACTTAGGAGTAAGATTCCCATTTGACCAACCAATGAAAATATACAATAGTTTATGGAATGCAGATGATTGGGCCACAAGAGGTGGTTTGGAGAAAACAGATTGGTCCAAAGCACCATTCATAGCAGGCTACAAAGGTTTCCACATTGATGGTTGTGAATCCTCTGTTAATGCGAAGTTTTGTGCAACACAGGGTAAAAGATGGTGGGATCAACCTGAATTTCGTGATCTTGATGCTGCTCAATGGCGTAGACTAAGATGGGTGCGAGAAAAATACACCATTTACAACTATTGCACTGATAGGAAACGTTTGCCTCAAGTTCCACCAGAATGCAAAAGAGACCGTGACATTTAA
Protein sequence

>MS.gene72278.t1

MNSSFWTLCLILASLVSFSLCAPPRKPVDVPFGRNYYPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGQGNKEQRIFLWFDPTKEFHRYSILWNMYQIVFFVDDVPIRVFKNSKDLGVRFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAGYKGFHIDGCESSVNAKFCATQGKRWWDQPEFRDLDAAQWRRLRWVREKYTIYNYCTDRKRLPQVPPECKRDRDI