AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72276

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72276.t1 MTR_7g084760 99.242 264 2 0 1 264 27 290 0.0 553
MS.gene72276.t1 MTR_7g084770 98.485 264 4 0 1 264 27 290 0.0 551
MS.gene72276.t1 MTR_7g084750 88.258 264 31 0 1 264 27 290 0.0 511
MS.gene72276.t1 MTR_6g033085 85.985 264 37 0 1 264 27 290 4.34e-178 491
MS.gene72276.t1 MTR_6g033055 85.985 264 37 0 1 264 27 290 7.10e-178 491
MS.gene72276.t1 MTR_4g097700 54.864 257 114 2 6 261 69 324 1.91e-102 301
MS.gene72276.t1 MTR_2g089140 53.008 266 115 3 6 263 25 288 2.44e-102 300
MS.gene72276.t1 MTR_4g097640 54.864 257 114 2 6 261 32 287 3.06e-102 300
MS.gene72276.t1 MTR_4g097670 54.864 257 114 2 6 261 32 287 3.06e-102 300
MS.gene72276.t1 MTR_4g128410 56.538 260 107 3 6 262 25 281 4.53e-101 296
MS.gene72276.t1 MTR_4g045853 52.652 264 115 3 6 261 27 288 8.03e-101 296
MS.gene72276.t1 MTR_3g084620 55.985 259 106 2 6 263 28 279 2.99e-100 294
MS.gene72276.t1 MTR_3g084630 55.985 259 106 2 6 263 28 279 3.41e-100 294
MS.gene72276.t1 MTR_8g081040 56.202 258 106 3 6 262 31 282 3.13e-99 291
MS.gene72276.t1 MTR_7g093530 55.985 259 108 3 6 261 24 279 5.64e-97 286
MS.gene72276.t1 MTR_4g128580 54.924 264 107 3 6 261 26 285 2.55e-96 284
MS.gene72276.t1 MTR_1g105900 50.579 259 126 2 6 262 34 292 1.63e-94 280
MS.gene72276.t1 MTR_4g128570 54.475 257 101 3 6 261 31 272 2.40e-94 279
MS.gene72276.t1 MTR_6g088320 48.864 264 129 4 2 261 22 283 1.15e-93 278
MS.gene72276.t1 MTR_4g126920 52.290 262 116 3 6 262 25 282 5.63e-93 276
MS.gene72276.t1 MTR_1g105495 51.724 261 122 2 6 262 35 295 5.85e-92 274
MS.gene72276.t1 MTR_8g102220 51.538 260 106 3 6 264 29 269 2.10e-91 271
MS.gene72276.t1 MTR_2g038860 51.698 265 115 3 6 261 26 286 1.78e-90 270
MS.gene72276.t1 MTR_2g038705 51.698 265 115 3 6 261 26 286 1.78e-90 270
MS.gene72276.t1 MTR_2g089140 54.667 225 94 2 47 263 1 225 4.77e-90 266
MS.gene72276.t1 MTR_8g102910 48.872 266 126 5 2 261 18 279 5.91e-90 268
MS.gene72276.t1 MTR_4g128400 50.189 265 122 4 4 261 22 283 1.31e-89 267
MS.gene72276.t1 MTR_8g013055 48.263 259 133 1 3 261 28 285 6.00e-88 263
MS.gene72276.t1 MTR_4g128590 51.575 254 102 3 13 261 38 275 9.69e-84 252
MS.gene72276.t1 MTR_5g091730 48.548 241 117 2 24 263 46 280 1.14e-79 242
MS.gene72276.t1 MTR_3g089540 47.347 245 116 3 25 264 49 285 1.90e-79 241
MS.gene72276.t1 MTR_7g056090 46.947 262 131 5 2 262 28 282 4.39e-78 238
MS.gene72276.t1 MTR_2g049030 43.893 262 134 9 3 262 27 277 6.19e-69 214
MS.gene72276.t1 MTR_2g049130 44.622 251 132 7 3 251 26 271 4.97e-66 207
MS.gene72276.t1 MTR_5g029100 37.313 268 156 5 4 261 40 305 1.88e-59 192
MS.gene72276.t1 MTR_4g057450 40.574 244 130 6 26 261 68 304 1.21e-58 189
MS.gene72276.t1 MTR_7g102260 37.410 278 146 7 5 261 21 291 9.95e-58 186
MS.gene72276.t1 MTR_8g064180 36.328 256 152 4 17 262 57 311 1.70e-57 186
MS.gene72276.t1 MTR_1g063020 38.662 269 144 8 3 261 37 294 7.23e-57 184
MS.gene72276.t1 MTR_1g033420 38.433 268 154 5 4 264 31 294 1.46e-56 184
MS.gene72276.t1 MTR_2g095800 38.060 268 146 7 4 261 52 309 7.44e-56 182
MS.gene72276.t1 MTR_8g090100 36.059 269 155 6 4 261 19 281 4.67e-55 180
MS.gene72276.t1 MTR_5g029100 37.344 241 139 5 31 261 36 274 2.75e-53 175
MS.gene72276.t1 MTR_8g479340 35.484 186 59 3 77 261 10 135 1.75e-28 106
MS.gene72276.t1 MTR_8g032640 33.908 174 107 4 28 199 33 200 4.75e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72276.t1 AT5G13870 83.650 263 43 0 2 264 28 290 7.12e-175 483
MS.gene72276.t1 AT5G13870 83.650 263 43 0 2 264 28 290 7.12e-175 483
MS.gene72276.t1 AT5G13870 83.650 263 43 0 2 264 28 290 7.12e-175 483
MS.gene72276.t1 AT2G06850 80.989 263 50 0 2 264 31 293 5.95e-169 469
MS.gene72276.t1 AT2G06850 80.786 229 44 0 36 264 5 233 9.35e-146 407
MS.gene72276.t1 AT3G23730 55.894 263 112 2 6 264 27 289 4.53e-105 306
MS.gene72276.t1 AT5G65730 54.264 258 116 2 6 262 35 291 2.81e-103 302
MS.gene72276.t1 AT4G14130 57.647 255 103 3 13 264 35 287 5.71e-103 301
MS.gene72276.t1 AT4G03210 53.846 260 116 2 6 263 29 286 4.22e-101 296
MS.gene72276.t1 AT4G37800 53.101 258 119 2 6 262 34 290 1.39e-99 293
MS.gene72276.t1 AT5G57560 53.933 267 112 3 2 261 19 281 1.24e-97 288
MS.gene72276.t1 AT5G57550 54.582 251 109 2 13 262 37 283 2.14e-97 287
MS.gene72276.t1 AT4G30270 54.086 257 102 3 6 261 24 265 1.20e-94 280
MS.gene72276.t1 AT5G57530 53.516 256 111 4 13 264 34 285 2.36e-94 279
MS.gene72276.t1 AT5G57540 52.471 263 117 4 6 264 26 284 4.75e-94 278
MS.gene72276.t1 AT4G25810 53.008 266 115 4 2 261 22 283 1.86e-93 277
MS.gene72276.t1 AT4G03210 55.947 227 98 1 39 263 32 258 4.67e-93 275
MS.gene72276.t1 AT4G13090 51.908 262 121 3 4 262 30 289 7.17e-93 276
MS.gene72276.t1 AT1G11545 52.471 263 119 3 6 262 38 300 4.09e-92 274
MS.gene72276.t1 AT5G48070 54.167 240 104 3 23 261 47 281 3.15e-90 269
MS.gene72276.t1 AT2G14620 48.450 258 131 2 6 261 37 294 2.45e-88 265
MS.gene72276.t1 AT4G28850 47.191 267 134 4 2 263 25 289 3.82e-87 261
MS.gene72276.t1 AT2G18800 47.794 272 123 4 6 261 28 296 5.86e-87 261
MS.gene72276.t1 AT4G25820 51.181 254 116 3 13 262 37 286 2.50e-86 259
MS.gene72276.t1 AT3G25050 47.510 261 130 4 4 261 33 289 7.82e-86 258
MS.gene72276.t1 AT4G13080 46.718 259 135 3 4 262 37 292 8.69e-86 258
MS.gene72276.t1 AT4G30290 53.982 226 98 3 37 261 56 276 1.83e-83 251
MS.gene72276.t1 AT1G65310 54.425 226 97 3 37 261 83 303 1.21e-82 250
MS.gene72276.t1 AT1G65310 54.425 226 97 3 37 261 61 281 1.24e-82 249
MS.gene72276.t1 AT4G30280 53.540 226 99 3 37 261 61 281 3.60e-82 248
MS.gene72276.t1 AT2G14620 49.160 238 119 2 26 261 7 244 6.66e-82 246
MS.gene72276.t1 AT2G14620 51.598 219 104 2 45 261 15 233 9.92e-80 240
MS.gene72276.t1 AT3G44990 42.264 265 136 7 5 261 38 293 1.72e-61 196
MS.gene72276.t1 AT1G32170 40.249 241 136 4 28 261 54 293 5.96e-59 191
MS.gene72276.t1 AT3G48580 39.922 258 139 5 4 261 32 273 8.83e-59 188
MS.gene72276.t1 AT2G36870 40.244 246 132 5 26 263 61 299 1.24e-56 183
MS.gene72276.t1 AT1G14720 36.502 263 161 3 4 261 29 290 2.62e-56 184
MS.gene72276.t1 AT4G18990 38.735 253 136 4 27 261 61 312 2.76e-55 182
MS.gene72276.t1 AT2G01850 38.430 242 143 3 25 261 50 290 1.38e-53 177
MS.gene72276.t1 AT1G10550 36.364 253 142 6 25 261 60 309 1.59e-52 173
MS.gene72276.t1 AT3G48580 39.381 226 122 4 36 261 4 214 5.08e-51 166
MS.gene72276.t1 AT3G48580 34.884 258 132 6 4 261 32 253 1.91e-43 148
MS.gene72276.t1 AT4G18990 35.345 232 123 5 55 261 9 238 2.67e-43 149
MS.gene72276.t1 AT2G36870 44.915 118 57 2 26 135 61 178 2.73e-28 107

Find 54 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATATACAATAGTTTA+TGG 0.145009 7.1:-20338145 MS.gene72276:CDS
AAGAACAAAGGATCTTTCTT+TGG 0.288385 7.1:-20338431 MS.gene72276:CDS
TTCACAGATACTCCATTCTA+TGG 0.293190 7.1:-20338389 MS.gene72276:CDS
ATCAGTGCAATAGTTGTAAA+TGG 0.324527 7.1:+20337902 None:intergenic
GCATCAAGATCACGAAATTC+AGG 0.366582 7.1:+20337966 None:intergenic
CTGCCAAATGGTACATCAAC+TGG 0.374020 7.1:+20339073 None:intergenic
TTTACAACTATTGCACTGAT+AGG 0.375154 7.1:-20337899 MS.gene72276:CDS
TCCAAAGGTTCATACTTGTT+TGG 0.384057 7.1:-20338718 MS.gene72276:CDS
TACAAAGGTTTCCACATTGA+TGG 0.385031 7.1:-20338050 MS.gene72276:CDS
GCCTGCTATGAATGGTGCTT+TGG 0.386418 7.1:+20338073 None:intergenic
GTTTATGGAATGCAGATGAT+TGG 0.387916 7.1:-20338130 MS.gene72276:CDS
GATCATATCAAATACTTCAA+TGG 0.398017 7.1:-20339025 MS.gene72276:CDS
ACCAAACAAGTATGAACCTT+TGG 0.401617 7.1:+20338717 None:intergenic
TTGGGCCACAAGAGGTGGTT+TGG 0.402579 7.1:-20338111 MS.gene72276:CDS
ACATTTGTTTGTAAAATGTA+AGG 0.414616 7.1:+20338477 None:intergenic
GAGTTCTTGGGGAACAGAAC+AGG 0.419669 7.1:-20338504 MS.gene72276:CDS
CTGGTACATGTTCCATAGAA+TGG 0.433083 7.1:+20338377 None:intergenic
CAAGTAGTACTTACACAATC+TGG 0.439811 7.1:+20338358 None:intergenic
AAGCCAGTTGATGTACCATT+TGG 0.454819 7.1:-20339076 MS.gene72276:CDS
TTACAAACAAATGTGTTCAC+TGG 0.454841 7.1:-20338468 MS.gene72276:CDS
CTCAATGGCGTAGACTAAGA+TGG 0.467350 7.1:-20337941 MS.gene72276:CDS
GGGTAATAGTTTCTGCCAAA+TGG 0.469874 7.1:+20339061 None:intergenic
TTTATGGAATGCAGATGATT+GGG 0.473254 7.1:-20338129 MS.gene72276:CDS
GTGATCTTGATGCTGCTCAA+TGG 0.483264 7.1:-20337956 MS.gene72276:CDS
TTTCAGTATGAACATTAAGA+TGG 0.493779 7.1:-20338692 MS.gene72276:CDS
ATGGTCCCTGGTGATTCAGC+TGG 0.509324 7.1:-20338673 MS.gene72276:CDS
TTGCATTCTGGTGGAACTTG+AGG 0.515049 7.1:+20337867 None:intergenic
GCAGAAACTATTACCCCACT+TGG 0.516801 7.1:-20339054 MS.gene72276:CDS
TGTACTTATCAAGATGAAGT+TGG 0.517285 7.1:+20338990 None:intergenic
TTTCTCCAAACCACCTCTTG+TGG 0.522277 7.1:+20338106 None:intergenic
CCTTTGTAGCCTGCTATGAA+TGG 0.547075 7.1:+20338065 None:intergenic
CAAACAAATGTGTTCACTGG+TGG 0.551578 7.1:-20338465 MS.gene72276:CDS
TCCAAAGCACCATTCATAGC+AGG 0.568617 7.1:-20338074 MS.gene72276:CDS
GTGCAACACAGGGTAAAAGA+TGG 0.568853 7.1:-20337998 MS.gene72276:CDS
GTGGTTTGGAGAAAACAGAT+TGG 0.570318 7.1:-20338097 MS.gene72276:CDS
CCATTCATAGCAGGCTACAA+AGG 0.570384 7.1:-20338065 MS.gene72276:CDS
ATGAACATTAAGATGGTCCC+TGG 0.574606 7.1:-20338685 MS.gene72276:CDS
CAGAAACTATTACCCCACTT+GGG 0.575217 7.1:-20339053 MS.gene72276:CDS
GATGATTGGGCCACAAGAGG+TGG 0.580281 7.1:-20338116 MS.gene72276:CDS
TCAATGGCGTAGACTAAGAT+GGG 0.582539 7.1:-20337940 MS.gene72276:CDS
CAACACAGGGTAAAAGATGG+TGG 0.587332 7.1:-20337995 MS.gene72276:CDS
CTTCATCTTGATAAGTACAC+TGG 0.589751 7.1:-20338986 MS.gene72276:intron
GCAGATGATTGGGCCACAAG+AGG 0.605501 7.1:-20338119 MS.gene72276:CDS
AATGTGTTCACTGGTGGACA+AGG 0.617308 7.1:-20338459 MS.gene72276:CDS
ACTGTTCCAGCTGAATCACC+AGG 0.622053 7.1:+20338667 None:intergenic
CATATCAAATACTTCAATGG+TGG 0.624848 7.1:-20339022 MS.gene72276:CDS
ACAAAACTTCGCATTAACAG+AGG 0.641098 7.1:+20338019 None:intergenic
AACACAGGGTAAAAGATGGT+GGG 0.641505 7.1:-20337994 MS.gene72276:CDS
ATATGATCAAAAGCCCAAGT+GGG 0.644752 7.1:+20339040 None:intergenic
GATATGATCAAAAGCCCAAG+TGG 0.646471 7.1:+20339039 None:intergenic
GACAAGGTAACAAAGAACAA+AGG 0.658573 7.1:-20338443 MS.gene72276:CDS
TATGATCAAAAGCCCAAGTG+GGG 0.682880 7.1:+20339041 None:intergenic
AGGATTCACAACCATCAATG+TGG 0.698159 7.1:+20338039 None:intergenic
CTGTTCCAGCTGAATCACCA+GGG 0.721487 7.1:+20338668 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAATTACTCAAATT+TGG + chr7.1:20338660-20338679 None:intergenic 10.0%
!!! GAAAAAACTTTAATTTTTTT+AGG + chr7.1:20338311-20338330 None:intergenic 10.0%
!! TAAAAAGTAAAAAACTATTG+TGG - chr7.1:20338633-20338652 MS.gene72276:intron 15.0%
!! TGAAAATATACAATAGTTTA+TGG - chr7.1:20338787-20338806 MS.gene72276:intron 15.0%
!!! AAACTATTGTATATTTTCAT+TGG + chr7.1:20338786-20338805 None:intergenic 15.0%
!!! AATTTTTTTGAAACTATGAT+TGG - chr7.1:20338677-20338696 MS.gene72276:CDS 15.0%
!! ACATTTGTTTGTAAAATGTA+AGG + chr7.1:20338458-20338477 None:intergenic 20.0%
!!! TATTGTATATTTTCATTGGT+TGG + chr7.1:20338782-20338801 None:intergenic 20.0%
!!! TTTACTTTTTAGTTAGATCA+GGG + chr7.1:20338624-20338643 None:intergenic 20.0%
!!! TTTCTAACTACTTTTTTAAC+AGG - chr7.1:20338178-20338197 MS.gene72276:CDS 20.0%
!!! TTTTACTTTTTAGTTAGATC+AGG + chr7.1:20338625-20338644 None:intergenic 20.0%
! CTGTAAAGTAATCACAAAAA+AGG + chr7.1:20338369-20338388 None:intergenic 25.0%
! GATCATATCAAATACTTCAA+TGG - chr7.1:20337907-20337926 MS.gene72276:CDS 25.0%
! TTTCAGTATGAACATTAAGA+TGG - chr7.1:20338240-20338259 MS.gene72276:intron 25.0%
!! TAGTACGAGTTTAAAACTAA+GGG + chr7.1:20338147-20338166 None:intergenic 25.0%
AAGAACAAAGGATCTTTCTT+TGG - chr7.1:20338501-20338520 MS.gene72276:CDS 30.0%
ATCAGTGCAATAGTTGTAAA+TGG + chr7.1:20339033-20339052 None:intergenic 30.0%
CATATCAAATACTTCAATGG+TGG - chr7.1:20337910-20337929 MS.gene72276:CDS 30.0%
TGTACTTATCAAGATGAAGT+TGG + chr7.1:20337945-20337964 None:intergenic 30.0%
TTACAAACAAATGTGTTCAC+TGG - chr7.1:20338464-20338483 MS.gene72276:CDS 30.0%
TTTATGGAATGCAGATGATT+GGG - chr7.1:20338803-20338822 MS.gene72276:intron 30.0%
! GTAGTACGAGTTTAAAACTA+AGG + chr7.1:20338148-20338167 None:intergenic 30.0%
! TATCTGTGAAACTCTTTTGT+TGG + chr7.1:20338533-20338552 None:intergenic 30.0%
! TTTACAACTATTGCACTGAT+AGG - chr7.1:20339033-20339052 MS.gene72276:CDS 30.0%
!! ATTTTCATTGGTTGGTCAAA+TGG + chr7.1:20338774-20338793 None:intergenic 30.0%
!! TTTTCATTGGTTGGTCAAAT+GGG + chr7.1:20338773-20338792 None:intergenic 30.0%
!!! ACTACTTTTTTAACAGGTAC+TGG - chr7.1:20338184-20338203 MS.gene72276:CDS 30.0%
!!! AGATAGATTTTGAGTTCTTG+GGG - chr7.1:20338417-20338436 MS.gene72276:CDS 30.0%
!!! ATTGGTTTGCAGATTTTTTG+TGG - chr7.1:20338695-20338714 MS.gene72276:CDS 30.0%
!!! CTGTTTTTGAACACTCTTAT+TGG + chr7.1:20338729-20338748 None:intergenic 30.0%
!!! GAGATAGATTTTGAGTTCTT+GGG - chr7.1:20338416-20338435 MS.gene72276:CDS 30.0%
!!! TGAGATAGATTTTGAGTTCT+TGG - chr7.1:20338415-20338434 MS.gene72276:CDS 30.0%
AACGCTTGTGTATAAGCTAT+AGG - chr7.1:20338063-20338082 MS.gene72276:CDS 35.0%
ACAAAACTTCGCATTAACAG+AGG + chr7.1:20338916-20338935 None:intergenic 35.0%
ACCAAACAAGTATGAACCTT+TGG + chr7.1:20338218-20338237 None:intergenic 35.0%
ATATGATCAAAAGCCCAAGT+GGG + chr7.1:20337895-20337914 None:intergenic 35.0%
CAAGTAGTACTTACACAATC+TGG + chr7.1:20338577-20338596 None:intergenic 35.0%
CTTCATCTTGATAAGTACAC+TGG - chr7.1:20337946-20337965 MS.gene72276:CDS 35.0%
GACAAGGTAACAAAGAACAA+AGG - chr7.1:20338489-20338508 MS.gene72276:CDS 35.0%
GTTTATGGAATGCAGATGAT+TGG - chr7.1:20338802-20338821 MS.gene72276:intron 35.0%
TACAAAGGTTTCCACATTGA+TGG - chr7.1:20338882-20338901 MS.gene72276:intron 35.0%
TCCAAAGGTTCATACTTGTT+TGG - chr7.1:20338214-20338233 MS.gene72276:CDS 35.0%
TTCAAAAACAGCAAGGACTT+AGG - chr7.1:20338738-20338757 MS.gene72276:intron 35.0%
TTCACAGATACTCCATTCTA+TGG - chr7.1:20338543-20338562 MS.gene72276:CDS 35.0%
!! AAGAGTGTTCAAAAACAGCA+AGG - chr7.1:20338731-20338750 MS.gene72276:CDS 35.0%
!! TTTTCTATTTAGCTCGTGCT+CGG - chr7.1:20337993-20338012 MS.gene72276:CDS 35.0%
AACACAGGGTAAAAGATGGT+GGG - chr7.1:20338938-20338957 MS.gene72276:intron 40.0%
AGGATTCACAACCATCAATG+TGG + chr7.1:20338896-20338915 None:intergenic 40.0%
ATGAACATTAAGATGGTCCC+TGG - chr7.1:20338247-20338266 MS.gene72276:intron 40.0%
CAAACAAATGTGTTCACTGG+TGG - chr7.1:20338467-20338486 MS.gene72276:CDS 40.0%
CAGAAACTATTACCCCACTT+GGG - chr7.1:20337879-20337898 MS.gene72276:CDS 40.0%
CTGGTACATGTTCCATAGAA+TGG + chr7.1:20338558-20338577 None:intergenic 40.0%
GATATGATCAAAAGCCCAAG+TGG + chr7.1:20337896-20337915 None:intergenic 40.0%
GCATCAAGATCACGAAATTC+AGG + chr7.1:20338969-20338988 None:intergenic 40.0%
GGGTAATAGTTTCTGCCAAA+TGG + chr7.1:20337874-20337893 None:intergenic 40.0%
TATGATCAAAAGCCCAAGTG+GGG + chr7.1:20337894-20337913 None:intergenic 40.0%
TCAATGGCGTAGACTAAGAT+GGG - chr7.1:20338992-20339011 MS.gene72276:CDS 40.0%
TGCCAAATGGTACATCAACT+GGG + chr7.1:20337861-20337880 None:intergenic 40.0%
! CGAGTTTAAAACTAAGGGCA+TGG + chr7.1:20338142-20338161 None:intergenic 40.0%
! GTGGTTTGGAGAAAACAGAT+TGG - chr7.1:20338835-20338854 MS.gene72276:intron 40.0%
!!! GGTACTGGTTTTCAATCCAA+AGG - chr7.1:20338199-20338218 MS.gene72276:CDS 40.0%
CAACACAGGGTAAAAGATGG+TGG - chr7.1:20338937-20338956 MS.gene72276:intron 45.0%
CCATTCATAGCAGGCTACAA+AGG - chr7.1:20338867-20338886 MS.gene72276:intron 45.0%
CCTTTGTAGCCTGCTATGAA+TGG + chr7.1:20338870-20338889 None:intergenic 45.0%
CTCAATGGCGTAGACTAAGA+TGG - chr7.1:20338991-20339010 MS.gene72276:CDS 45.0%
CTGCCAAATGGTACATCAAC+TGG + chr7.1:20337862-20337881 None:intergenic 45.0%
GCAGAAACTATTACCCCACT+TGG - chr7.1:20337878-20337897 MS.gene72276:CDS 45.0%
GCCAAATGGTACATCAACTG+GGG + chr7.1:20337860-20337879 None:intergenic 45.0%
GTGATCTTGATGCTGCTCAA+TGG - chr7.1:20338976-20338995 MS.gene72276:intron 45.0%
GTGCAACACAGGGTAAAAGA+TGG - chr7.1:20338934-20338953 MS.gene72276:intron 45.0%
TTGCATTCTGGTGGAACTTG+AGG + chr7.1:20339068-20339087 None:intergenic 45.0%
TTTCTCCAAACCACCTCTTG+TGG + chr7.1:20338829-20338848 None:intergenic 45.0%
! AATGTGTTCACTGGTGGACA+AGG - chr7.1:20338473-20338492 MS.gene72276:CDS 45.0%
! TCCAAAGCACCATTCATAGC+AGG - chr7.1:20338858-20338877 MS.gene72276:intron 45.0%
!! GCGAAGTTTTGTGCAACACA+GGG - chr7.1:20338924-20338943 MS.gene72276:intron 45.0%
!! TGCGAAGTTTTGTGCAACAC+AGG - chr7.1:20338923-20338942 MS.gene72276:intron 45.0%
ACTGTTCCAGCTGAATCACC+AGG + chr7.1:20338268-20338287 None:intergenic 50.0%
CTGTTCCAGCTGAATCACCA+GGG + chr7.1:20338267-20338286 None:intergenic 50.0%
GAGTTCTTGGGGAACAGAAC+AGG - chr7.1:20338428-20338447 MS.gene72276:CDS 50.0%
GCCTGCTATGAATGGTGCTT+TGG + chr7.1:20338862-20338881 None:intergenic 50.0%
ATGGTCCCTGGTGATTCAGC+TGG - chr7.1:20338259-20338278 MS.gene72276:intron 55.0%
GATGATTGGGCCACAAGAGG+TGG - chr7.1:20338816-20338835 MS.gene72276:intron 55.0%
GCAGATGATTGGGCCACAAG+AGG - chr7.1:20338813-20338832 MS.gene72276:intron 55.0%
TTGGGCCACAAGAGGTGGTT+TGG - chr7.1:20338821-20338840 MS.gene72276:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 20337859 20339095 20337859 ID=MS.gene72276
chr7.1 mRNA 20337859 20339095 20337859 ID=MS.gene72276.t1;Parent=MS.gene72276
chr7.1 exon 20338987 20339095 20338987 ID=MS.gene72276.t1.exon1;Parent=MS.gene72276.t1
chr7.1 CDS 20338987 20339095 20338987 ID=cds.MS.gene72276.t1;Parent=MS.gene72276.t1
chr7.1 exon 20338654 20338754 20338654 ID=MS.gene72276.t1.exon2;Parent=MS.gene72276.t1
chr7.1 CDS 20338654 20338754 20338654 ID=cds.MS.gene72276.t1;Parent=MS.gene72276.t1
chr7.1 exon 20338372 20338565 20338372 ID=MS.gene72276.t1.exon3;Parent=MS.gene72276.t1
chr7.1 CDS 20338372 20338565 20338372 ID=cds.MS.gene72276.t1;Parent=MS.gene72276.t1
chr7.1 exon 20337859 20338247 20337859 ID=MS.gene72276.t1.exon4;Parent=MS.gene72276.t1
chr7.1 CDS 20337859 20338247 20337859 ID=cds.MS.gene72276.t1;Parent=MS.gene72276.t1
Gene Sequence

>MS.gene72276

CCAGTTGATGTACCATTTGGCAGAAACTATTACCCCACTTGGGCTTTTGATCATATCAAATACTTCAATGGTGGTTCAGAGATCCAACTTCATCTTGATAAGTACACTGGTTAGTGTTTAACACACTTCATAGCTTTTCTATTTAGCTCGTGCTCGGATAAACAACTTAATTTACAACTTATAATATAAACATTTATCATGATAAACGCTTGTGTATAAGCTATAGGAACATATCATAAATGATTATGCTAGTAGATATGCTATAATATGTCAAGTCAATCCATGCCCTTAGTTTTAAACTCGTACTACATTGTTCATTTTTCTAACTACTTTTTTAACAGGTACTGGTTTTCAATCCAAAGGTTCATACTTGTTTGGTCATTTCAGTATGAACATTAAGATGGTCCCTGGTGATTCAGCTGGAACAGTAACTGCTTTCTATGTATGTTCCTAAAAAAATTAAAGTTTTTTCATTTTGTTTCTATTTTTAGTATTTTGTTGTAATGACCTTTTTTGTGATTACTTTACAGCTATCTTCACAAAATGCTGAGCATGATGAGATAGATTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTACAAACAAATGTGTTCACTGGTGGACAAGGTAACAAAGAACAAAGGATCTTTCTTTGGTTTGATCCAACAAAAGAGTTTCACAGATACTCCATTCTATGGAACATGTACCAGATTGTGTAAGTACTACTTGATTCAACTATAGTATCATTCATTTCCCTGATCTAACTAAAAAGTAAAAAACTATTGTGGTCCAAATTTGAGTAATTAATTAATTTTTTTGAAACTATGATTGGTTTGCAGATTTTTTGTGGATGATGTTCCAATAAGAGTGTTCAAAAACAGCAAGGACTTAGGAGTAAGATTCCCATTTGACCAACCAATGAAAATATACAATAGTTTATGGAATGCAGATGATTGGGCCACAAGAGGTGGTTTGGAGAAAACAGATTGGTCCAAAGCACCATTCATAGCAGGCTACAAAGGTTTCCACATTGATGGTTGTGAATCCTCTGTTAATGCGAAGTTTTGTGCAACACAGGGTAAAAGATGGTGGGATCAACCTGAATTTCGTGATCTTGATGCTGCTCAATGGCGTAGACTAAGATGGGTGCGAGAAAAATACACCATTTACAACTATTGCACTGATAGGAAACGTTTGCCTCAAGTTCCACCAGAATGCAAAAGAGACC
Protein sequence

>MS.gene72276.t1

PVDVPFGRNYYPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGQGNKEQRIFLWFDPTKEFHRYSILWNMYQIVFFVDDVPIRVFKNSKDLGVRFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAGYKGFHIDGCESSVNAKFCATQGKRWWDQPEFRDLDAAQWRRLRWVREKYTIYNYCTDRKRLPQVPPECKRD