AlfalfaGEDB | MS.gene029452

M. sativa cultivar XinJiangDaYe / MS.gene029452

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029452.t1	XP_024629393.1	85	652	93	3	1	649	1	650	0.00E+00	1097

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029452.t1	Q9C6K9	44.7	665	293	22	9	642	5	625	3.1e-132	473.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029452.t1	A0A396KAF2	85.0	652	93	3	1	649	1	650	0.0e+00	1097.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene016742	MS.gene029452	PPI
MS.gene016743	MS.gene029452	PPI
MS.gene029452	MS.gene81620	PPI
MS.gene029452	MS.gene81617	PPI
MS.gene029452	MS.gene016758	PPI
MS.gene029452	MS.gene73119	PPI
MS.gene029452	MS.gene070503	PPI
MS.gene029452	MS.gene070507	PPI
MS.gene029452	MS.gene057884	PPI
MS.gene029452	MS.gene057883	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029452.t1	MTR_1g110130	83.436	652	92	4	1	649	1	639	0.0	1102
MS.gene029452.t1	MTR_1g110120	51.008	645	270	13	25	638	31	660	0.0	592
MS.gene029452.t1	MTR_1g110110	50.152	660	269	14	19	643	13	647	0.0	574
MS.gene029452.t1	MTR_1g110180	46.828	662	299	15	19	643	30	675	0.0	565
MS.gene029452.t1	MTR_5g055310	45.541	628	266	20	5	588	6	601	2.60e-165	488
MS.gene029452.t1	MTR_7g082530	59.946	372	127	3	266	633	325	678	1.87e-149	449
MS.gene029452.t1	MTR_7g082530	60.108	371	126	3	266	632	325	677	4.29e-149	448
MS.gene029452.t1	MTR_6g083020	57.143	399	133	8	211	578	224	615	2.75e-146	439
MS.gene029452.t1	MTR_6g044830	42.097	601	278	18	27	573	2	586	4.03e-136	412
MS.gene029452.t1	MTR_6g044740	51.208	414	170	6	198	580	202	614	7.99e-130	397

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029452.t1	AT1G25390	45.554	641	279	21	29	643	30	626	4.03e-164	484
MS.gene029452.t1	AT1G25390	45.554	641	279	21	29	643	30	626	4.03e-164	484
MS.gene029452.t1	AT1G18390	56.757	370	130	4	269	635	306	648	3.84e-137	416
MS.gene029452.t1	AT1G18390	56.757	370	130	4	269	635	312	654	5.16e-137	416
MS.gene029452.t1	AT5G38210	39.824	683	281	21	4	593	20	665	1.00e-133	409
MS.gene029452.t1	AT5G38210	39.824	683	281	21	4	593	2	647	1.17e-133	408
MS.gene029452.t1	AT1G66880	58.127	363	130	7	281	639	328	672	1.13e-132	405
MS.gene029452.t1	AT1G66880	58.127	363	130	7	281	639	570	914	4.42e-130	405
MS.gene029452.t1	AT5G38210	40.089	671	286	23	4	593	18	653	5.14e-129	396
MS.gene029452.t1	AT1G66880	57.895	361	130	7	283	639	951	1293	2.26e-126	404

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Find 146 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTGGCGTGGAAGTT+GGG	0.421521	1.2:+81446681	MS.gene029452:CDS
AAAGAGGCCAACGTTGAGGT+GGG	0.630371	1.2:-81445951	None:intergenic
AACAGTGAAGTTATTATTAA+AGG	0.200595	1.2:-81445925	None:intergenic
AACCCCAGGCTATATGGATC+CGG	0.503326	1.2:+81447805	MS.gene029452:CDS
AACTCAAAGGGATCATCAGT+AGG	0.627420	1.2:-81446173	None:intergenic
AAGACACTTGTTGCAATCAT+TGG	0.336410	1.2:-81446231	None:intergenic
AAGAGTGATGTTTACAGCTT+TGG	0.370042	1.2:+81447857	MS.gene029452:CDS
AAGTAAAATCCATGAGCTGG+TGG	0.601099	1.2:+81447982	MS.gene029452:CDS
AAGTGTCTTCATCATCAACG+GGG	0.814907	1.2:+81446245	MS.gene029452:CDS
AATAGTTGCAATAGCAGAGT+TGG	0.483487	1.2:+81448048	MS.gene029452:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGTTTAGAAGATGGG+AGG	+	chr1.2:81446343-81446362	MS.gene029452:intron	30.0%
AAAAAGTAAAATCCATGAGC+TGG	+	chr1.2:81447979-81447998	MS.gene029452:CDS	30.0%
AACCAGAATGTCTTAAAAGT+TGG	-	chr1.2:81446452-81446471	None:intergenic	30.0%
AGATAAGGATGAGATAAACT+TGG	+	chr1.2:81447931-81447950	MS.gene029452:CDS	30.0%
ATGCCTAGAAATCAATAAAG+GGG	-	chr1.2:81447034-81447053	None:intergenic	30.0%
CAACGTGATCGTTAATAAAA+AGG	+	chr1.2:81446413-81446432	MS.gene029452:intron	30.0%
CAATGCCTAGAAATCAATAA+AGG	-	chr1.2:81447036-81447055	None:intergenic	30.0%
CTAGTAACTGAATGAAAGTT+AGG	-	chr1.2:81446515-81446534	None:intergenic	30.0%
GAGGTCTCATACTATTAAAA+CGG	-	chr1.2:81446088-81446107	None:intergenic	30.0%
GATCACGTTGTATAAAACTT+TGG	-	chr1.2:81446403-81446422	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	81445606	81448375	81445606	ID=MS.gene029452
chr1.2	mRNA	81445606	81448375	81445606	ID=MS.gene029452.t1;Parent=MS.gene029452
chr1.2	exon	81445606	81446311	81445606	ID=MS.gene029452.t1.exon1;Parent=MS.gene029452.t1
chr1.2	CDS	81445606	81446311	81445606	ID=cds.MS.gene029452.t1;Parent=MS.gene029452.t1
chr1.2	exon	81446676	81446708	81446676	ID=MS.gene029452.t1.exon2;Parent=MS.gene029452.t1
chr1.2	CDS	81446676	81446708	81446676	ID=cds.MS.gene029452.t1;Parent=MS.gene029452.t1
chr1.2	exon	81447050	81447262	81447050	ID=MS.gene029452.t1.exon3;Parent=MS.gene029452.t1
chr1.2	CDS	81447050	81447262	81447050	ID=cds.MS.gene029452.t1;Parent=MS.gene029452.t1
chr1.2	exon	81447378	81448375	81447378	ID=MS.gene029452.t1.exon4;Parent=MS.gene029452.t1
chr1.2	CDS	81447378	81448375	81447378	ID=cds.MS.gene029452.t1;Parent=MS.gene029452.t1

Gene Sequence

>MS.gene029452

ATGACCCCCCTTTTCATTTTCAAATCATTAATATTCTTCCAGTTTCTGCTTGTTTCAGCTCAAGATGGAAGATGTCCAACCTCATTTAGTTGTGGATATCTAGGCAATGTTACCTTCCCTTTCACAGTTACACAACACCCTCACTGTGGCATACTAGCCATAAGTGGTTGCAATCATAACGATATATCTGATCCCAAAAGCATCCAAGTAGGGAAGCCACCATCAGAACAGTCTTTTACAGTTACATACGTGGATCATGATACCATCACAGTCACCTATGAAGCTCAACGGAATAATTTGCATTCTAAAAATTGTCAAGCCTTTAATAATAACTTCACTGTTCCTCCCACCTCAACGTTGGCCTCTTTCTATATTAAATATAATATAACTATGTTCAAGTGCAACCACTCCCATAGTGTCAACCTTCCCAAATACTTTTATAACTATACAAACTGTCCTGGTTACAATCTCTATTATGACCGTTTTAATAGTATGAGACCTCGTGGTTTCAAAGTGCCAAGCTCTTTGGTACAGTGTAAACAGTTCCAGCTTGCAATAAGAGACCGTCCTACTGATGATCCCTTTGAGTTTCTATCTCCTGAGATCTCCATTCAAGTACAATTATCCAATGATTGCAACAAGTGTCTTCATCATCAACGGGGACAATGCCAACTTGACATTCAAGGAAAATTCCACTGTGCCGAAGGTATGCATTCACAATACACGCACATAGTTAAAAAAAAGTTTAGAAGATGGGAGGTTGTCCTCGGTGAAGGGAATTTAATAGACCTCAACCAAAGTTTTATACAACGTGATCGTTAATAAAAAGGTTACTAAAGAAATCCAACTTTTAAGACATTCTGGTTTGACATATACTAAAATCTTGGCACTCAGCAGTAATTCAATCCTAACTTTCATTCAGTTACTAGACTGTTTATGTACAGTAGAATTAGTAATTTGAAATTTCCGGCCTTGTATAGCAGCAATTTAAGCCTTGTATAGTTATTTAGTCCCGAGTCCTCGCTTTATTGCTTGCTTTAAATTAATTGGTCCTTTAATTTCTGCTGCAGGGGATAAAAGATTGGCGTGGAAGTTGGGACTTGGTAATATTTGTTCCTCTGACATAGCATTTTATTGACGTTCGAATGTCGTGAAATTTAAAGATCCTGAGCATCATGCACATATATTCCATTTCTTTTATACTCTACTCTCCCTTTCTAATGGTAACAAATATTTTTATATTGGAAGTTCACATCTCGCAAGAAAATGTTTTGCCTGTATGTTTATTTCTCTTTTTTTATAGACCTATCACAGTTTGGATGGTGGAGAACATGATAGTCAAGCAATCACAGTCAATCAGACAGTATTTCAAATTCCCTTTGCATGCTCTTCAAGATAATATCCAATAAATTATTGAATTTTTCTCCCCTTTATTGATTTCTAGGCATTGGACTTCTTGTCATTATTATAACCGGGTTGCTGATTATATGGCGCTGTAAACGACGCGTTCCTGATTTCTACTCTAACAAATACACAGAGAGTGAGAGTTTCTACCATGGGGTGCCGGTCTTTTCCTTTAAGGATCTTGAAGTAGCAACAAAAAAATTTGACAGTTCAAGAGAGCTTGGAGAAGGAGGATTTGGCACTGTTTATTATGGTATGTGTAGCACTCACACAAACTCTACTATCTATTCAAAGGGCGGTAGGTTTAATTAGAACTTCCCTGTAGTTATAAGTAAATAATAACTTTTGCTTTCATCTCTGACAACCAGGAAAACTCAAAGATGGTCGTGAAGTTGCTGTTAAGCGCTTATATCAGCACAACATTAAACGCGTTGAACAATTCATGAATGAAATCAAGATCCTCACTCGCTTGCGCCACAGAAATCTAGTGTCTCTCTACGGCTGCACTTCACATCATAGTCATGAACTATTGCTTGTATATGAATACATTTCAAATGGAACTGTTGCCAGTCATTTGCGTCGTGAATCTGGCTTTTTGCCATGGCACATCAGAATGAAAGTTGCATTAGAGACTGCTACTGCTTTAGCATATCTCCATGCTTCTGAAATCATTCACCGTGATGTGAAAACAAACAACATTCTCCTTGACAACACCTTTTGCATTAAAGTTGCAGACTTTGGACTGTCAAAATTGTTCCCAAATGATGTCACACACGTCTCCACAGCTCCACAAGGAACCCCAGGCTATATGGATCCGGAATATCATCAATGCTACAGGCTTACAAGCAAGAGTGATGTTTACAGCTTTGGAGTTGTACTTGTTGAGCTGATATTGTCTATGCCAGCAGTTGATATGAGCAGAGATAAGGATGAGATAAACTTGGCAAATTTAGCCGTACGGAAGATTCAAAAAAGTAAAATCCATGAGCTGGTGGATCCTTCCCTTGGCTTTGAGTCAGATAACGATGTTAAAAAGAAAATAGTTGCAATAGCAGAGTTGGCTTTTCAGTGTTTGCAACTGGATAAGGAATTGAGGCCCTCAATGGAGGAGGTTTTGGACGTGCTGAGGAGAATTGATAGTGGGAGCAGGAGGGATGAGTTTGGACATGTAGAGGAAGTAATAGCTCGTGGAGCAGTGATGTCGAGTATTAATGTACGTTCAATGTCATTGTCTTCACCCGATCACGTTGAGATGAAACTGTTGAAGAATAAGAAGTTAACACCTTCTCCTAAGTCCGTGACAGATAAATGGGACAGTGAATCGACTACTTCTAATGTCAGTGGTCAATCAGCGAGCCGAATGTAA

Protein sequence

>MS.gene029452.t1

MTPLFIFKSLIFFQFLLVSAQDGRCPTSFSCGYLGNVTFPFTVTQHPHCGILAISGCNHNDISDPKSIQVGKPPSEQSFTVTYVDHDTITVTYEAQRNNLHSKNCQAFNNNFTVPPTSTLASFYIKYNITMFKCNHSHSVNLPKYFYNYTNCPGYNLYYDRFNSMRPRGFKVPSSLVQCKQFQLAIRDRPTDDPFEFLSPEISIQVQLSNDCNKCLHHQRGQCQLDIQGKFHCAEGDKRLAWKLGLGIGLLVIIITGLLIIWRCKRRVPDFYSNKYTESESFYHGVPVFSFKDLEVATKKFDSSRELGEGGFGTVYYGKLKDGREVAVKRLYQHNIKRVEQFMNEIKILTRLRHRNLVSLYGCTSHHSHELLLVYEYISNGTVASHLRRESGFLPWHIRMKVALETATALAYLHASEIIHRDVKTNNILLDNTFCIKVADFGLSKLFPNDVTHVSTAPQGTPGYMDPEYHQCYRLTSKSDVYSFGVVLVELILSMPAVDMSRDKDEINLANLAVRKIQKSKIHELVDPSLGFESDNDVKKKIVAIAELAFQCLQLDKELRPSMEEVLDVLRRIDSGSRRDEFGHVEEVIARGAVMSSINVRSMSLSSPDHVEMKLLKNKKLTPSPKSVTDKWDSESTTSNVSGQSASRM