AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029509

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029509.t1 MTR_1g108765 99.807 519 1 0 1 519 1 519 0.0 1052
MS.gene029509.t1 MTR_1g108770 91.379 522 42 3 1 519 1 522 0.0 927
MS.gene029509.t1 MTR_0002s0650 70.429 443 122 4 84 519 19 459 0.0 600
MS.gene029509.t1 MTR_7g021780 70.112 445 124 4 82 519 17 459 0.0 597
MS.gene029509.t1 MTR_4g451275 70.045 444 126 3 82 519 17 459 0.0 596
MS.gene029509.t1 MTR_3g035730 69.663 445 126 4 82 519 17 459 0.0 589
MS.gene029509.t1 MTR_7g033765 69.213 445 128 4 82 519 17 459 0.0 586
MS.gene029509.t1 MTR_7g033755 61.137 422 94 5 104 519 1 358 1.74e-165 478
MS.gene029509.t1 MTR_2g066870 61.264 364 127 5 159 519 29 381 1.28e-148 432
MS.gene029509.t1 MTR_7g117920 65.724 283 88 4 82 357 17 297 6.59e-111 332
MS.gene029509.t1 MTR_1829s0010 77.451 204 46 0 316 519 1 204 9.94e-111 332
MS.gene029509.t1 MTR_6g055020 64.286 266 86 4 82 340 17 280 1.51e-99 301
MS.gene029509.t1 MTR_2g066860 60.870 161 50 4 1 159 2 151 3.55e-51 173
MS.gene029509.t1 MTR_1g076100 68.750 80 25 0 373 452 5 84 1.48e-31 117
MS.gene029509.t1 MTR_4g010980 47.761 134 64 2 83 210 15 148 4.78e-30 115
MS.gene029509.t1 MTR_1g112870 28.715 397 247 11 121 493 60 444 5.88e-28 117
MS.gene029509.t1 MTR_7g081010 28.788 396 247 12 121 493 59 442 6.47e-28 117
MS.gene029509.t1 MTR_4g005410 28.012 332 213 9 180 493 203 526 1.77e-25 110
MS.gene029509.t1 MTR_5g090750 76.786 56 13 0 456 511 21 76 1.38e-22 92.0
MS.gene029509.t1 MTR_0212s0040 25.556 360 239 7 92 434 30 377 7.12e-20 94.0
MS.gene029509.t1 MTR_7g498250 86.957 69 8 1 1 69 1 68 2.46e-18 81.6
MS.gene029509.t1 MTR_0002s0550 24.866 374 252 10 147 506 86 444 4.34e-18 87.4
MS.gene029509.t1 MTR_7g498250 86.957 69 8 1 1 69 1 68 6.52e-18 79.3
MS.gene029509.t1 MTR_3g065340 40.146 137 50 7 2 138 3 107 6.36e-16 75.5
MS.gene029509.t1 MTR_3g099550 77.778 45 10 0 98 142 10 54 2.22e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029509.t1 AT5G08680 86.008 486 61 3 37 519 41 522 0.0 847
MS.gene029509.t1 AT5G08690 84.444 495 69 3 30 519 28 519 0.0 832
MS.gene029509.t1 AT5G08670 85.361 485 66 2 37 519 38 519 0.0 831
MS.gene029509.t1 ATCG00480 70.045 444 126 3 82 519 17 459 0.0 597
MS.gene029509.t1 AT1G20260 28.463 397 248 11 121 493 58 442 1.79e-28 119
MS.gene029509.t1 AT1G76030 28.788 396 247 11 121 493 58 441 4.87e-28 117
MS.gene029509.t1 AT4G38510 28.283 396 249 11 121 493 59 442 6.40e-28 117
MS.gene029509.t1 AT4G38510 28.283 396 249 11 121 493 59 442 6.40e-28 117
MS.gene029509.t1 AT4G38510 28.283 396 249 11 121 493 59 442 6.40e-28 117
MS.gene029509.t1 AT4G38510 28.283 396 249 11 121 493 59 442 6.40e-28 117
MS.gene029509.t1 AT4G38510 28.283 396 249 11 121 493 66 449 7.08e-28 117
MS.gene029509.t1 AT1G78900 29.276 304 190 8 208 493 229 525 2.54e-25 110
MS.gene029509.t1 AT1G78900 29.276 304 190 8 208 493 229 525 2.54e-25 110
MS.gene029509.t1 ATMG01190 26.073 303 203 4 144 434 84 377 2.52e-20 94.4
MS.gene029509.t1 AT2G07698 26.263 297 198 4 150 434 360 647 7.46e-20 94.0
MS.gene029509.t1 ATCG00120 24.648 426 269 13 98 506 54 444 9.28e-17 83.6

Find 144 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCTTTCTCCACTTATTT+TGG 0.083323 1.3:+74209494 MS.gene029509:CDS
CGTGCCCGTGTCGGTCTTAC+TGG 0.200311 1.3:+74207844 MS.gene029509:CDS
TCAAGATATCATTGCTATTC+TGG 0.206828 1.3:+74209578 MS.gene029509:CDS
GATCCTTGTTACTGGTATTA+AGG 0.259182 1.3:+74207267 MS.gene029509:CDS
GGACGTATCATGAATGTTAT+TGG 0.260657 1.3:+74207042 MS.gene029509:CDS
AAAATTACTGATGAATTTAC+TGG 0.279082 1.3:+74206110 MS.gene029509:CDS
TGCTACCACCTTTGCTCACT+TGG 0.289656 1.3:+74209281 MS.gene029509:CDS
GTCTGCGCCTCCGGCGAAAA+AGG 0.297452 1.3:+74206070 MS.gene029509:CDS
GGTCAAGTTTGTCAGGTTAT+TGG 0.301021 1.3:+74206146 MS.gene029509:CDS
CAATCTCGCGCTTCACCTTA+TGG 0.302992 1.3:+74205990 MS.gene029509:CDS
TTCTCTGTGTTTGCTGGTGT+TGG 0.303687 1.3:+74207596 MS.gene029509:CDS
GGTGGTTTCTCTGTGTTTGC+TGG 0.310509 1.3:+74207590 MS.gene029509:intron
GTTGGAAGTGGCTCAGCATT+TGG 0.326827 1.3:+74206253 MS.gene029509:CDS
CAAGATATCATTGCTATTCT+GGG 0.368654 1.3:+74209579 MS.gene029509:CDS
CCGACACGGGCACGAGCACC+AGG 0.372154 1.3:-74207835 None:intergenic
ATCCAATCTTTCCTCCCCTT+TGG 0.376397 1.3:-74207406 None:intergenic
ACTGATGAATTTACTGGAAA+AGG 0.377841 1.3:+74206116 MS.gene029509:CDS
AGAGGTAATTGAACCCTTCT+TGG 0.378135 1.3:-74209211 None:intergenic
GCATTTAGGTTCCCGTTGGC+AGG 0.378643 1.3:+74207010 MS.gene029509:intron
AGCTGGTGCGGCGGCAGCCG+CGG 0.383307 1.3:-74206045 None:intergenic
ATTGGATTGTTTGGTGGTGC+TGG 0.384032 1.3:+74207422 MS.gene029509:CDS
CTATCCTGCTGTTGATCCAT+TGG 0.388341 1.3:+74209458 MS.gene029509:CDS
AATCAGCGACGCGGTTTAAG+AGG 0.393361 1.3:-74206016 None:intergenic
GGAGGAAAGATTGGATTGTT+TGG 0.394972 1.3:+74207413 MS.gene029509:CDS
TCTAGATCATTCTTCGAGAT+TGG 0.401462 1.3:+74206229 MS.gene029509:CDS
GCAGGAGCTTCTCTATGAAT+AGG 0.403583 1.3:-74207217 None:intergenic
CCAACATTGTCTACTGATCT+TGG 0.404691 1.3:+74209162 MS.gene029509:CDS
ATCTTTCCTCCCCTTTGGTA+TGG 0.406086 1.3:-74207401 None:intergenic
CCCGTTGGCAGGGCTACCCT+TGG 0.406509 1.3:+74207021 MS.gene029509:CDS
TTGGAAGTGGCTCAGCATTT+GGG 0.411969 1.3:+74206254 MS.gene029509:CDS
TACCAAAGGGGAGGAAAGAT+TGG 0.412235 1.3:+74207404 MS.gene029509:CDS
GAACAACAGATCCTTGTTAC+TGG 0.412746 1.3:+74207259 MS.gene029509:CDS
CATAAGGTGAAGCGCGAGAT+TGG 0.420817 1.3:-74205989 None:intergenic
TTCAACTCAACATATTTGCC+TGG 0.425059 1.3:-74209708 None:intergenic
TTCGAGATTGGTGTTGGAAG+TGG 0.436166 1.3:+74206241 MS.gene029509:CDS
GATGTTGAGGCAGTGATTGA+TGG 0.442204 1.3:-74205954 None:intergenic
ACCAGCTCCGTCTGCGCCTC+CGG 0.443943 1.3:+74206061 MS.gene029509:CDS
TGAAAATAGATTTCTGAGCT+TGG 0.452396 1.3:+74209432 MS.gene029509:intron
GGTCGTATTCCATCTGCTGT+TGG 0.461688 1.3:+74209132 MS.gene029509:CDS
AGCGGTCGGTCAAGTTTGTC+AGG 0.462609 1.3:+74206139 MS.gene029509:CDS
GCCGGAGGCGCAGACGGAGC+TGG 0.462776 1.3:-74206062 None:intergenic
TTGTTTGGTGGTGCTGGTGT+AGG 0.469965 1.3:+74207428 MS.gene029509:CDS
ATAAGGTGAAGCGCGAGATT+GGG 0.471370 1.3:-74205988 None:intergenic
TGCTCATCACCCAAAATAAG+TGG 0.473721 1.3:-74209504 None:intergenic
GGAGAACACTCAAAGTTTCC+AGG 0.477010 1.3:+74209731 MS.gene029509:CDS
TGAATAGATATTTACACTGA+TGG 0.479353 1.3:-74206357 None:intergenic
CCAAGGGTAGCCCTGCCAAC+GGG 0.484569 1.3:-74207021 None:intergenic
GGAGAACCTATCGATCATAA+AGG 0.484786 1.3:+74207063 MS.gene029509:CDS
AGGCAAATATGTTGAGTTGA+AGG 0.484986 1.3:+74209710 MS.gene029509:CDS
GAAGTCTTCACTGGTGCCCC+AGG 0.485134 1.3:+74209690 MS.gene029509:CDS
AAGTGAGCAAAGGTGGTAGC+AGG 0.486320 1.3:-74209279 None:intergenic
CCCTTTGGTATGGTGCAAGC+AGG 0.487695 1.3:-74207391 None:intergenic
TCCGATCTTGACTGCTCTTG+AGG 0.488534 1.3:+74206205 MS.gene029509:CDS
CAGCAGGCACATAGATAGCT+TGG 0.490509 1.3:-74209236 None:intergenic
CATTAAGCTGGGTGAAAAGC+AGG 0.492871 1.3:+74207673 MS.gene029509:CDS
GCAAAGGTGGTAGCAGGAGC+AGG 0.495043 1.3:-74209273 None:intergenic
AAGACTTCTGCCACGTGGAA+AGG 0.495827 1.3:-74209675 None:intergenic
TACAACAGTGTTGTCTAGAC+AGG 0.501816 1.3:+74209308 MS.gene029509:CDS
TCAGAGGTGTCTGCCCTGCT+TGG 0.505198 1.3:+74209111 MS.gene029509:CDS
GTTGTACACCACGAGCAGTT+TGG 0.510260 1.3:-74209530 None:intergenic
GAAGATGGCTTCACGCAGAT+TGG 0.511649 1.3:+74205887 None:intergenic
TCAACTCAACATATTTGCCT+GGG 0.512319 1.3:-74209707 None:intergenic
GGAAAGATTGGATTGTTTGG+TGG 0.512411 1.3:+74207416 MS.gene029509:CDS
CGCAGACGGAGCTGGTGCGG+CGG 0.513405 1.3:-74206054 None:intergenic
TGAGAGTGGTGTCATTAAGC+TGG 0.514665 1.3:+74207661 MS.gene029509:CDS
TCATTCTTCGAGATTGGTGT+TGG 0.515515 1.3:+74206235 MS.gene029509:CDS
GGTAATTGAACCCTTCTTGG+TGG 0.519165 1.3:-74209208 None:intergenic
AACAATGTTGCTAAGGCTCA+TGG 0.524856 1.3:+74207479 MS.gene029509:CDS
TATCATTGCTATTCTGGGAA+TGG 0.525736 1.3:+74209584 MS.gene029509:CDS
AGCAAATGTGCTCTTGTGTA+TGG 0.527028 1.3:+74207796 MS.gene029509:CDS
CGGTTTAAGAGGTAGCCATA+AGG 0.528728 1.3:-74206005 None:intergenic
ACTTATCAACAATGTTGCTA+AGG 0.530040 1.3:+74207472 MS.gene029509:CDS
CTGAAGGTGTTGTTCGTGGA+TGG 0.535684 1.3:+74206312 MS.gene029509:CDS
GTGGCTCAGCATTTGGGTGA+AGG 0.538038 1.3:+74206260 MS.gene029509:CDS
CATTTAGGTTCCCGTTGGCA+GGG 0.541826 1.3:+74207011 MS.gene029509:intron
AATTCGCCTTTATGATCGAT+AGG 0.542417 1.3:-74207069 None:intergenic
GAATCCAATGGATCAACAGC+AGG 0.543347 1.3:-74209462 None:intergenic
CCTGCTTGCACCATACCAAA+GGG 0.545094 1.3:+74207391 MS.gene029509:CDS
GCGTATTACAACCACCAAGA+AGG 0.546572 1.3:+74209197 MS.gene029509:CDS
GCTACTGAAGGTGTTGTTCG+TGG 0.547853 1.3:+74206308 MS.gene029509:CDS
GTTGCTTGCTCAACAAAAGC+AGG 0.548745 1.3:-74207235 None:intergenic
GGATCTGTCAAATCATCAGC+AGG 0.549266 1.3:-74209252 None:intergenic
CACGTGGCAGAAGTCTTCAC+TGG 0.550208 1.3:+74209681 MS.gene029509:CDS
AGGCGCAGACGGAGCTGGTG+CGG 0.551051 1.3:-74206057 None:intergenic
ACCTCAAGAGCAGTCAAGAT+CGG 0.553967 1.3:-74206206 None:intergenic
CCTGGTGCTCGTGCCCGTGT+CGG 0.555324 1.3:+74207835 MS.gene029509:CDS
TCCAAGGGTAGCCCTGCCAA+CGG 0.557056 1.3:-74207022 None:intergenic
GAATAGATATTTACACTGAT+GGG 0.564594 1.3:-74206356 None:intergenic
GTTGACGTCAGATTTGAAGA+AGG 0.565009 1.3:+74206176 MS.gene029509:CDS
GACACGGGCACGAGCACCAG+GGG 0.566580 1.3:-74207833 None:intergenic
ACCTGCTTGCACCATACCAA+AGG 0.568701 1.3:+74207390 MS.gene029509:CDS
GGAGGTTAGCCTCGATGTTG+AGG 0.570201 1.3:-74205967 None:intergenic
GTTTCGATGAAGATCGGCGA+AGG 0.571803 1.3:-74205932 None:intergenic
TTGATGGTTTCGATGAAGAT+CGG 0.572741 1.3:-74205938 None:intergenic
AAAAGGAGGTTCCCGGAGGT+GGG 0.574915 1.3:+74206087 MS.gene029509:CDS
CACATAGATAGCTTGGACAG+AGG 0.576642 1.3:-74209229 None:intergenic
CGTATTACAACCACCAAGAA+GGG 0.576665 1.3:+74209198 MS.gene029509:CDS
GGTTGGTAACCAACAGCAGA+TGG 0.577576 1.3:-74209141 None:intergenic
ATGAATAGGCAAATAATGCT+CGG 0.578382 1.3:-74207203 None:intergenic
AGATGGAATACGACCAAGCA+GGG 0.581769 1.3:-74209124 None:intergenic
ATACGAGATGTTGAATCCAA+TGG 0.586954 1.3:-74209474 None:intergenic
TAACATTCATGATACGTCCA+AGG 0.587125 1.3:-74207038 None:intergenic
CAGATGGAATACGACCAAGC+AGG 0.590811 1.3:-74209125 None:intergenic
TATTGCATTTAGGTTCCCGT+TGG 0.591161 1.3:+74207006 MS.gene029509:intron
AGCATCCAAGTGAGCAAAGG+TGG 0.598239 1.3:-74209286 None:intergenic
TTCAAATCTGACGTCAACGA+CGG 0.598861 1.3:-74206171 None:intergenic
TTCAGTAGCATCCATAGCAA+TGG 0.599982 1.3:-74206294 None:intergenic
TGTACAAGTCATTACCCTCA+CGG 0.600998 1.3:-74207628 None:intergenic
GATCAGTAGACAATGTTGGT+TGG 0.607921 1.3:-74209158 None:intergenic
AGGTGAAGCGCGAGATTGGG+AGG 0.610480 1.3:-74205985 None:intergenic
CGACACGGGCACGAGCACCA+GGG 0.613887 1.3:-74207834 None:intergenic
TTTACTGGAAAAGGAGCGGT+CGG 0.614536 1.3:+74206125 MS.gene029509:CDS
TGTTGTGAGAACCATTGCTA+TGG 0.617952 1.3:+74206283 MS.gene029509:CDS
TGGTGCTTACTTGAGTAAAG+CGG 0.618849 1.3:-74207936 None:intergenic
AAGTCCAGTAAGACCGACAC+GGG 0.620214 1.3:-74207848 None:intergenic
CCAAGATCAGTAGACAATGT+TGG 0.620434 1.3:-74209162 None:intergenic
GTACAAGTCATTACCCTCAC+GGG 0.622213 1.3:-74207627 None:intergenic
CATCTTGTCCTTCAGCATCA+CGG 0.623861 1.3:-74207888 None:intergenic
GAGAGTGGTGTCATTAAGCT+GGG 0.624808 1.3:+74207662 MS.gene029509:CDS
ACATTGTCTACTGATCTTGG+AGG 0.626628 1.3:+74209165 MS.gene029509:CDS
CAACTCAACATATTTGCCTG+GGG 0.640965 1.3:-74209706 None:intergenic
GAGCATTTCCGTGATGCTGA+AGG 0.641193 1.3:+74207880 MS.gene029509:CDS
GGATGGAGAGTTCTCAACAC+TGG 0.642951 1.3:+74206329 MS.gene029509:CDS
TGTAGCATCCAAGTGAGCAA+AGG 0.644891 1.3:-74209289 None:intergenic
AACATTCATGATACGTCCAA+GGG 0.646240 1.3:-74207037 None:intergenic
TTTCGATGAAGATCGGCGAA+GGG 0.656946 1.3:-74205931 None:intergenic
GAGCACTACCAAACTGCTCG+TGG 0.658374 1.3:+74209522 MS.gene029509:CDS
CGGTTGCATAATCAGCGACG+CGG 0.668541 1.3:-74206025 None:intergenic
CAGTGAAGACTTCTGCCACG+TGG 0.672728 1.3:-74209680 None:intergenic
TCAAGAGCAGTCAAGATCGG+AGG 0.674140 1.3:-74206203 None:intergenic
CTTGCACCATACCAAAGGGG+AGG 0.675495 1.3:+74207395 MS.gene029509:CDS
CTTAAGTCAGCCTTTCCACG+TGG 0.682611 1.3:+74209665 MS.gene029509:CDS
TGAATTTACTGGAAAAGGAG+CGG 0.685743 1.3:+74206121 MS.gene029509:CDS
CGTCGCTGATTATGCAACCG+CGG 0.688793 1.3:+74206028 MS.gene029509:CDS
ATTGCTATGGATGCTACTGA+AGG 0.691576 1.3:+74206296 MS.gene029509:CDS
TTACCTTAATACCAGTAACA+AGG 0.693188 1.3:-74207270 None:intergenic
TACAGAGAAATGATTGAGAG+TGG 0.693204 1.3:+74207647 MS.gene029509:CDS
TAAGTCCAGTAAGACCGACA+CGG 0.693275 1.3:-74207849 None:intergenic
GTTGGAGAAAGAACCCGTGA+GGG 0.695614 1.3:+74207614 MS.gene029509:CDS
TGTTGGAGAAAGAACCCGTG+AGG 0.716517 1.3:+74207613 MS.gene029509:CDS
CAATCACTGCCTCAACATCG+AGG 0.719323 1.3:+74205958 MS.gene029509:CDS
ACACGGGCACGAGCACCAGG+GGG 0.726552 1.3:-74207832 None:intergenic
GTAATTGTAGGCTAACTCAG+AGG 0.733224 1.3:+74209095 MS.gene029509:intron
CTGCTTGCACCATACCAAAG+GGG 0.735053 1.3:+74207392 MS.gene029509:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATTAAAATAGTTCAATT+TGG + chr1.3:74208880-74208899 MS.gene029509:intron 15.0%
!! ATAAAAAGATTTAAGGAAAT+GGG - chr1.3:74207312-74207331 None:intergenic 15.0%
!! ATAAATAGACAATGATAAAA+AGG - chr1.3:74209051-74209070 None:intergenic 15.0%
!! GAAAAGTTATAGAAATTAAA+CGG - chr1.3:74206950-74206969 None:intergenic 15.0%
!!! ATTTCCTTAAATCTTTTTAT+GGG + chr1.3:74207312-74207331 MS.gene029509:intron 15.0%
!!! TTTAGGTAAACTATTTTTTT+GGG + chr1.3:74208934-74208953 MS.gene029509:intron 15.0%
!!! TTTTAATTTTAGAACTAGTT+CGG + chr1.3:74208830-74208849 MS.gene029509:intron 15.0%
!!! TTTTTATTGTTTTTTGATTG+TGG + chr1.3:74206576-74206595 MS.gene029509:intron 15.0%
!! AAAATTACTGATGAATTTAC+TGG + chr1.3:74206110-74206129 MS.gene029509:CDS 20.0%
!! ACAACCTATGAAAAAAAATA+AGG - chr1.3:74207368-74207387 None:intergenic 20.0%
!! ATGAACAATATTATTGAATG+TGG - chr1.3:74207724-74207743 None:intergenic 20.0%
!! ATGGAATAAAAAAAGGATAA+AGG - chr1.3:74208404-74208423 None:intergenic 20.0%
!! ATTACCTGAAATTAAGTTAA+GGG - chr1.3:74208373-74208392 None:intergenic 20.0%
!! CATAAAAAGATTTAAGGAAA+TGG - chr1.3:74207313-74207332 None:intergenic 20.0%
!! GAAAAAAAATAAGGCAAAAT+TGG - chr1.3:74207359-74207378 None:intergenic 20.0%
!! GACAAAAATGGAATAAAAAA+AGG - chr1.3:74208411-74208430 None:intergenic 20.0%
!! TACATAAAAACCAAACATTA+CGG - chr1.3:74208998-74209017 None:intergenic 20.0%
!! TAGACTGAAAATAAATTTAG+AGG - chr1.3:74207105-74207124 None:intergenic 20.0%
!!! AAAAAATGTAATTCCACTTT+TGG + chr1.3:74208653-74208672 MS.gene029509:intron 20.0%
!!! AAAGTGGAATTACATTTTTT+AGG - chr1.3:74208653-74208672 None:intergenic 20.0%
!!! AGAACTAAATGATCTTATTT+CGG + chr1.3:74209402-74209421 MS.gene029509:intron 20.0%
!!! ATCTGATTTTGAGATAATTT+TGG + chr1.3:74206448-74206467 MS.gene029509:intron 20.0%
!!! CATTTCCTTAAATCTTTTTA+TGG + chr1.3:74207311-74207330 MS.gene029509:intron 20.0%
!!! GAATTTTTTTTTGACTTTAC+TGG + chr1.3:74206406-74206425 MS.gene029509:intron 20.0%
!!! GTTTAGGTAAACTATTTTTT+TGG + chr1.3:74208933-74208952 MS.gene029509:intron 20.0%
!!! TAAGTTTTGATTTTTTGAGA+AGG + chr1.3:74206540-74206559 MS.gene029509:intron 20.0%
!!! TAATGTTTGGTTTTTATGTA+TGG + chr1.3:74208998-74209017 MS.gene029509:intron 20.0%
!!! TATGTATGGTTTTTTATAGA+TGG + chr1.3:74209012-74209031 MS.gene029509:intron 20.0%
!!! TATTTTTGGAGCTTAATTTA+AGG - chr1.3:74208264-74208283 None:intergenic 20.0%
!!! TTAAGAATCGTTGAATTTTA+CGG - chr1.3:74209650-74209669 None:intergenic 20.0%
!!! TTTGCCTTATTTTTTTTCAT+AGG + chr1.3:74207361-74207380 MS.gene029509:intron 20.0%
! AATCCAAAAGAAAGTCAAAT+TGG - chr1.3:74206862-74206881 None:intergenic 25.0%
! ACTGCAATGAAAAAAGATAA+AGG + chr1.3:74208579-74208598 MS.gene029509:intron 25.0%
! ACTGTGTATAGCTATTATTA+TGG - chr1.3:74208804-74208823 None:intergenic 25.0%
! AGGAAAAACAGTTCTTATTA+TGG + chr1.3:74207448-74207467 MS.gene029509:CDS 25.0%
! CATTACCTGAAATTAAGTTA+AGG - chr1.3:74208374-74208393 None:intergenic 25.0%
! CGTGATTACAGTAAATTAAA+CGG - chr1.3:74206676-74206695 None:intergenic 25.0%
! CTTTCAATCTTCAAATATGT+GGG + chr1.3:74208490-74208509 MS.gene029509:intron 25.0%
! GAATAGATATTTACACTGAT+GGG - chr1.3:74206359-74206378 None:intergenic 25.0%
! TATTGCCTGAAATTAAGTTA+AGG + chr1.3:74208609-74208628 MS.gene029509:intron 25.0%
! TGAATAGATATTTACACTGA+TGG - chr1.3:74206360-74206379 None:intergenic 25.0%
! TGTATCAAAGTCGTTAATTA+TGG + chr1.3:74207754-74207773 MS.gene029509:intron 25.0%
! TGTGAAAAAAATACCAAAAG+TGG - chr1.3:74208669-74208688 None:intergenic 25.0%
! TTAGTCCTTAACTTAATTTC+AGG - chr1.3:74208617-74208636 None:intergenic 25.0%
! TTGCAATTAAAAGTAAAAGC+AGG + chr1.3:74206742-74206761 MS.gene029509:intron 25.0%
! TTTGCCCATAAAAAGATTTA+AGG - chr1.3:74207319-74207338 None:intergenic 25.0%
!! AACATACTTAAAACGCTTTT+TGG - chr1.3:74206972-74206991 None:intergenic 25.0%
!! AATTTTTATGTTGCGTTTCA+TGG + chr1.3:74206475-74206494 MS.gene029509:intron 25.0%
!! AGTTTGCATTAGTAAGTTTT+GGG - chr1.3:74207978-74207997 None:intergenic 25.0%
!! TAAGAATCGTTGAATTTTAC+GGG - chr1.3:74209649-74209668 None:intergenic 25.0%
!! TTTTTCACAATAAGTGATGA+TGG + chr1.3:74208767-74208786 MS.gene029509:intron 25.0%
!!! ACGCTGTACATATTTTAAAT+GGG + chr1.3:74206713-74206732 MS.gene029509:intron 25.0%
!!! CTTAATTTCAGGTAATGTTT+TGG + chr1.3:74208377-74208396 MS.gene029509:intron 25.0%
!!! GTAAACTATTTTTTTGGGTT+TGG + chr1.3:74208939-74208958 MS.gene029509:intron 25.0%
!!! TACGCTGTACATATTTTAAA+TGG + chr1.3:74206712-74206731 MS.gene029509:intron 25.0%
!!! TTATTCCATTTTTGTCCTAT+TGG + chr1.3:74208415-74208434 MS.gene029509:intron 25.0%
ACTGATGAATTTACTGGAAA+AGG + chr1.3:74206116-74206135 MS.gene029509:CDS 30.0%
ACTTATCAACAATGTTGCTA+AGG + chr1.3:74207472-74207491 MS.gene029509:CDS 30.0%
ATGAACCAATAGGACAAAAA+TGG - chr1.3:74208423-74208442 None:intergenic 30.0%
ATGAATAGGCAAATAATGCT+CGG - chr1.3:74207206-74207225 None:intergenic 30.0%
CAAAAGTAAAAACCAATAGC+AGG - chr1.3:74206908-74206927 None:intergenic 30.0%
CATTGTTGTGTATTGCATTT+AGG + chr1.3:74206996-74207015 MS.gene029509:intron 30.0%
CCACATATTTGAAGATTGAA+AGG - chr1.3:74208492-74208511 None:intergenic 30.0%
CCTTTCAATCTTCAAATATG+TGG + chr1.3:74208489-74208508 MS.gene029509:intron 30.0%
CTTAATTTCAGGCAATAGTT+AGG - chr1.3:74208606-74208625 None:intergenic 30.0%
CTTGAAAATCCATATGCAAA+AGG + chr1.3:74208552-74208571 MS.gene029509:intron 30.0%
TAGTCCCTTAACTTAATTTC+AGG + chr1.3:74208366-74208385 MS.gene029509:intron 30.0%
TCATCAGTTGAAAATCACTA+TGG - chr1.3:74207158-74207177 None:intergenic 30.0%
TGAAAATAGATTTCTGAGCT+TGG + chr1.3:74209432-74209451 MS.gene029509:intron 30.0%
TTACCTTAATACCAGTAACA+AGG - chr1.3:74207273-74207292 None:intergenic 30.0%
TTTATTAGCTCGATAGAATC+AGG + chr1.3:74208742-74208761 MS.gene029509:intron 30.0%
! CAAGATATCATTGCTATTCT+GGG + chr1.3:74209579-74209598 MS.gene029509:CDS 30.0%
! CAGTTTGCATTAGTAAGTTT+TGG - chr1.3:74207979-74207998 None:intergenic 30.0%
! GATAAATGGGGTCTTTTTAA+TGG + chr1.3:74206625-74206644 MS.gene029509:intron 30.0%
! GCTAATAAATTGCGTGTTTT+AGG - chr1.3:74208731-74208750 None:intergenic 30.0%
! TATGCTTTCTCCACTTATTT+TGG + chr1.3:74209494-74209513 MS.gene029509:CDS 30.0%
! TCAAGATATCATTGCTATTC+TGG + chr1.3:74209578-74209597 MS.gene029509:CDS 30.0%
! TGGGTGCATGATTTAAATTT+TGG - chr1.3:74207959-74207978 None:intergenic 30.0%
! TGTTCTTTGTGTTTGGTAAT+TGG + chr1.3:74208109-74208128 MS.gene029509:intron 30.0%
!! ATGCTTTCTCCACTTATTTT+GGG + chr1.3:74209495-74209514 MS.gene029509:CDS 30.0%
!! ATTTTCAAGCTTGAAATCCA+CGG + chr1.3:74208453-74208472 MS.gene029509:intron 30.0%
!! TTTAGGAAAATTTGGTGTCA+CGG - chr1.3:74208714-74208733 None:intergenic 30.0%
!!! AATTTTAGAACTAGTTCGGT+AGG + chr1.3:74208834-74208853 MS.gene029509:intron 30.0%
!!! ATTTTAGAACTAGTTCGGTA+GGG + chr1.3:74208835-74208854 MS.gene029509:intron 30.0%
!!! TATTTTAATGTTCAGTCCAG+TGG - chr1.3:74208872-74208891 None:intergenic 30.0%
!!! TTGCGTGTTTTAGGAAAATT+TGG - chr1.3:74208722-74208741 None:intergenic 30.0%
AACATTCATGATACGTCCAA+GGG - chr1.3:74207040-74207059 None:intergenic 35.0%
AATTCGCCTTTATGATCGAT+AGG - chr1.3:74207072-74207091 None:intergenic 35.0%
ATAAATTGCCCAAACCAAAC+AGG - chr1.3:74206653-74206672 None:intergenic 35.0%
ATACGAGATGTTGAATCCAA+TGG - chr1.3:74209477-74209496 None:intergenic 35.0%
ATGATGCCTGATGTAATTGT+AGG + chr1.3:74209083-74209102 MS.gene029509:intron 35.0%
ATGTCAATCCTCGATAAATG+GGG + chr1.3:74206613-74206632 MS.gene029509:intron 35.0%
CAGAGAAACCACCTATTATA+TGG - chr1.3:74207583-74207602 None:intergenic 35.0%
GAAAGTCAAATTGGAGCAAA+TGG - chr1.3:74206853-74206872 None:intergenic 35.0%
GAACACATGTTCTTTGTGTT+TGG + chr1.3:74208102-74208121 MS.gene029509:intron 35.0%
GAGTGTTTCCATATAATAGG+TGG + chr1.3:74207572-74207591 MS.gene029509:intron 35.0%
GATCCTTGTTACTGGTATTA+AGG + chr1.3:74207267-74207286 MS.gene029509:CDS 35.0%
GATGTCAATCCTCGATAAAT+GGG + chr1.3:74206612-74206631 MS.gene029509:intron 35.0%
GCTGAGTGTTTCCATATAAT+AGG + chr1.3:74207569-74207588 MS.gene029509:intron 35.0%
GGACGTATCATGAATGTTAT+TGG + chr1.3:74207042-74207061 MS.gene029509:CDS 35.0%
GTGCAAAAAGCAAGTAGAAA+AGG - chr1.3:74208233-74208252 None:intergenic 35.0%
TAAAAAGACCCCATTTATCG+AGG - chr1.3:74206624-74206643 None:intergenic 35.0%
TAAACACAAGCAGTTCGATT+TGG + chr1.3:74208911-74208930 MS.gene029509:intron 35.0%
TAACATTCATGATACGTCCA+AGG - chr1.3:74207041-74207060 None:intergenic 35.0%
TACAGAGAAATGATTGAGAG+TGG + chr1.3:74207647-74207666 MS.gene029509:CDS 35.0%
TCAAATGCAGATGAACCAAT+AGG - chr1.3:74208433-74208452 None:intergenic 35.0%
TCAACTCAACATATTTGCCT+GGG - chr1.3:74209710-74209729 None:intergenic 35.0%
TCTAGATCATTCTTCGAGAT+TGG + chr1.3:74206229-74206248 MS.gene029509:CDS 35.0%
TGAATTTACTGGAAAAGGAG+CGG + chr1.3:74206121-74206140 MS.gene029509:CDS 35.0%
TGATGTCAATCCTCGATAAA+TGG + chr1.3:74206611-74206630 MS.gene029509:intron 35.0%
TTCAACTCAACATATTTGCC+TGG - chr1.3:74209711-74209730 None:intergenic 35.0%
! AAATCCACGGTTTTCTTTTG+CGG + chr1.3:74208466-74208485 MS.gene029509:intron 35.0%
! AAGCGCTAAAGCATTAAGTT+AGG - chr1.3:74207510-74207529 None:intergenic 35.0%
! AGTTAGCCTACAATTACATC+AGG - chr1.3:74209092-74209111 None:intergenic 35.0%
! TATCATTGCTATTCTGGGAA+TGG + chr1.3:74209584-74209603 MS.gene029509:CDS 35.0%
! TTGATGGTTTCGATGAAGAT+CGG - chr1.3:74205941-74205960 None:intergenic 35.0%
!! AGGCAAATATGTTGAGTTGA+AGG + chr1.3:74209710-74209729 MS.gene029509:CDS 35.0%
!! GCTCCAATTTGACTTTCTTT+TGG + chr1.3:74206856-74206875 MS.gene029509:intron 35.0%
!! TGTTCATGGTTTGGTTAGTA+TGG - chr1.3:74208974-74208993 None:intergenic 35.0%
AACAATGTTGCTAAGGCTCA+TGG + chr1.3:74207479-74207498 MS.gene029509:CDS 40.0%
ACATTGTCTACTGATCTTGG+AGG + chr1.3:74209165-74209184 MS.gene029509:CDS 40.0%
AGAGGTAATTGAACCCTTCT+TGG - chr1.3:74209214-74209233 None:intergenic 40.0%
AGCAAATGTGCTCTTGTGTA+TGG + chr1.3:74207796-74207815 MS.gene029509:CDS 40.0%
ATTGCTATGGATGCTACTGA+AGG + chr1.3:74206296-74206315 MS.gene029509:CDS 40.0%
CAACTCAACATATTTGCCTG+GGG - chr1.3:74209709-74209728 None:intergenic 40.0%
CAGTTCAATAGCACACAGTT+CGG - chr1.3:74208056-74208075 None:intergenic 40.0%
CATTACGGTTGTTCATGGTT+TGG - chr1.3:74208983-74209002 None:intergenic 40.0%
CCAAACATTACGGTTGTTCA+TGG - chr1.3:74208988-74209007 None:intergenic 40.0%
CCAACATTGTCTACTGATCT+TGG + chr1.3:74209162-74209181 MS.gene029509:CDS 40.0%
CCAAGATCAGTAGACAATGT+TGG - chr1.3:74209165-74209184 None:intergenic 40.0%
CCATGAACAACCGTAATGTT+TGG + chr1.3:74208985-74209004 MS.gene029509:intron 40.0%
CGTATTACAACCACCAAGAA+GGG + chr1.3:74209198-74209217 MS.gene029509:CDS 40.0%
GAACAACAGATCCTTGTTAC+TGG + chr1.3:74207259-74207278 MS.gene029509:CDS 40.0%
GATCAGTAGACAATGTTGGT+TGG - chr1.3:74209161-74209180 None:intergenic 40.0%
GCAAGTTTCAGACACAAACA+CGG - chr1.3:74208162-74208181 None:intergenic 40.0%
GGAAAGATTGGATTGTTTGG+TGG + chr1.3:74207416-74207435 MS.gene029509:CDS 40.0%
GGAGAACCTATCGATCATAA+AGG + chr1.3:74207063-74207082 MS.gene029509:CDS 40.0%
GGAGGAAAGATTGGATTGTT+TGG + chr1.3:74207413-74207432 MS.gene029509:CDS 40.0%
GGATTTGAATCTTGCAAGCA+CGG + chr1.3:74206877-74206896 MS.gene029509:intron 40.0%
GGTCAAGTTTGTCAGGTTAT+TGG + chr1.3:74206146-74206165 MS.gene029509:CDS 40.0%
GTAATTGTAGGCTAACTCAG+AGG + chr1.3:74209095-74209114 MS.gene029509:intron 40.0%
GTTGACGTCAGATTTGAAGA+AGG + chr1.3:74206176-74206195 MS.gene029509:CDS 40.0%
TACAACAGTGTTGTCTAGAC+AGG + chr1.3:74209308-74209327 MS.gene029509:CDS 40.0%
TATGTTGCGTTTCATGGATC+TGG + chr1.3:74206481-74206500 MS.gene029509:intron 40.0%
TCATTCTTCGAGATTGGTGT+TGG + chr1.3:74206235-74206254 MS.gene029509:CDS 40.0%
TGCTCATCACCCAAAATAAG+TGG - chr1.3:74209507-74209526 None:intergenic 40.0%
TGGTGCTTACTTGAGTAAAG+CGG - chr1.3:74207939-74207958 None:intergenic 40.0%
TGTACAAGTCATTACCCTCA+CGG - chr1.3:74207631-74207650 None:intergenic 40.0%
TGTTGTGAGAACCATTGCTA+TGG + chr1.3:74206283-74206302 MS.gene029509:CDS 40.0%
TTCAAATCTGACGTCAACGA+CGG - chr1.3:74206174-74206193 None:intergenic 40.0%
TTCAGTAGCATCCATAGCAA+TGG - chr1.3:74206297-74206316 None:intergenic 40.0%
! ACTGTGTGCTATTGAACTGT+TGG + chr1.3:74208057-74208076 MS.gene029509:intron 40.0%
! ATCAGTAATTTTCCCACCTC+CGG - chr1.3:74206102-74206121 None:intergenic 40.0%
! GCAGTTTGTCCTTTTGCATA+TGG - chr1.3:74208564-74208583 None:intergenic 40.0%
! TATTGCATTTAGGTTCCCGT+TGG + chr1.3:74207006-74207025 MS.gene029509:intron 40.0%
! TCTTTTTAATGGCGCCTGTT+TGG + chr1.3:74206636-74206655 MS.gene029509:intron 40.0%
!! CAAGCAGTTCGATTTGGTTT+AGG + chr1.3:74208917-74208936 MS.gene029509:intron 40.0%
!! TTTCACACAGTTTGCTGCAA+TGG + chr1.3:74208682-74208701 MS.gene029509:intron 40.0%
ACCTCAAGAGCAGTCAAGAT+CGG - chr1.3:74206209-74206228 None:intergenic 45.0%
AGATGGAATACGACCAAGCA+GGG - chr1.3:74209127-74209146 None:intergenic 45.0%
ATAAGGTGAAGCGCGAGATT+GGG - chr1.3:74205991-74206010 None:intergenic 45.0%
ATCCAATCTTTCCTCCCCTT+TGG - chr1.3:74207409-74207428 None:intergenic 45.0%
ATCTTTCCTCCCCTTTGGTA+TGG - chr1.3:74207404-74207423 None:intergenic 45.0%
CAATAGCACACAGTTCGGTT+TGG - chr1.3:74208051-74208070 None:intergenic 45.0%
CACATAGATAGCTTGGACAG+AGG - chr1.3:74209232-74209251 None:intergenic 45.0%
CAGAGTAACACAGACACATG+TGG - chr1.3:74206779-74206798 None:intergenic 45.0%
CATCTTGTCCTTCAGCATCA+CGG - chr1.3:74207891-74207910 None:intergenic 45.0%
CATTAAGCTGGGTGAAAAGC+AGG + chr1.3:74207673-74207692 MS.gene029509:CDS 45.0%
CGGTTTAAGAGGTAGCCATA+AGG - chr1.3:74206008-74206027 None:intergenic 45.0%
CTATCCTGCTGTTGATCCAT+TGG + chr1.3:74209458-74209477 MS.gene029509:CDS 45.0%
GAATCCAATGGATCAACAGC+AGG - chr1.3:74209465-74209484 None:intergenic 45.0%
GATGTTGAGGCAGTGATTGA+TGG - chr1.3:74205957-74205976 None:intergenic 45.0%
GCAGGAGCTTCTCTATGAAT+AGG - chr1.3:74207220-74207239 None:intergenic 45.0%
GCGTATTACAACCACCAAGA+AGG + chr1.3:74209197-74209216 MS.gene029509:CDS 45.0%
GGATCTGTCAAATCATCAGC+AGG - chr1.3:74209255-74209274 None:intergenic 45.0%
GGTAATTGAACCCTTCTTGG+TGG - chr1.3:74209211-74209230 None:intergenic 45.0%
GTACAAGTCATTACCCTCAC+GGG - chr1.3:74207630-74207649 None:intergenic 45.0%
GTTGCTTGCTCAACAAAAGC+AGG - chr1.3:74207238-74207257 None:intergenic 45.0%
TAAGTCCAGTAAGACCGACA+CGG - chr1.3:74207852-74207871 None:intergenic 45.0%
TACCAAAGGGGAGGAAAGAT+TGG + chr1.3:74207404-74207423 MS.gene029509:CDS 45.0%
TGTAGCATCCAAGTGAGCAA+AGG - chr1.3:74209292-74209311 None:intergenic 45.0%
TTAATGGCGCCTGTTTGGTT+TGG + chr1.3:74206641-74206660 MS.gene029509:intron 45.0%
TTGGAAGTGGCTCAGCATTT+GGG + chr1.3:74206254-74206273 MS.gene029509:CDS 45.0%
TTTACTGGAAAAGGAGCGGT+CGG + chr1.3:74206125-74206144 MS.gene029509:CDS 45.0%
TTTCGATGAAGATCGGCGAA+GGG - chr1.3:74205934-74205953 None:intergenic 45.0%
! AGCACGGATTTTCCTGCTAT+TGG + chr1.3:74206893-74206912 MS.gene029509:intron 45.0%
! TAATGGCGCCTGTTTGGTTT+GGG + chr1.3:74206642-74206661 MS.gene029509:intron 45.0%
! TAGGGAAGCATAAGAACCAC+TGG + chr1.3:74208853-74208872 MS.gene029509:intron 45.0%
! TCAGTAATTTTCCCACCTCC+GGG - chr1.3:74206101-74206120 None:intergenic 45.0%
! TTCTCTGTGTTTGCTGGTGT+TGG + chr1.3:74207596-74207615 MS.gene029509:CDS 45.0%
!! ATTGGATTGTTTGGTGGTGC+TGG + chr1.3:74207422-74207441 MS.gene029509:CDS 45.0%
!! GAGAGTGGTGTCATTAAGCT+GGG + chr1.3:74207662-74207681 MS.gene029509:CDS 45.0%
!! TGAGAGTGGTGTCATTAAGC+TGG + chr1.3:74207661-74207680 MS.gene029509:CDS 45.0%
!! TTCGAGATTGGTGTTGGAAG+TGG + chr1.3:74206241-74206260 MS.gene029509:CDS 45.0%
!!! ATAATTAAATTAAATTTTGT+TGG + chr1.3:74208318-74208337 MS.gene029509:intron 5.0%
!!! TTAAAGATTTAATTTATTTT+TGG - chr1.3:74208278-74208297 None:intergenic 5.0%
AAGACTTCTGCCACGTGGAA+AGG - chr1.3:74209678-74209697 None:intergenic 50.0%
AAGGCCGCAAAAGAAAACCG+TGG - chr1.3:74208473-74208492 None:intergenic 50.0%
AAGTCCAGTAAGACCGACAC+GGG - chr1.3:74207851-74207870 None:intergenic 50.0%
AAGTGAGCAAAGGTGGTAGC+AGG - chr1.3:74209282-74209301 None:intergenic 50.0%
AATCAGCGACGCGGTTTAAG+AGG - chr1.3:74206019-74206038 None:intergenic 50.0%
ACCTGCTTGCACCATACCAA+AGG + chr1.3:74207390-74207409 MS.gene029509:CDS 50.0%
AGCATCCAAGTGAGCAAAGG+TGG - chr1.3:74209289-74209308 None:intergenic 50.0%
CAATCACTGCCTCAACATCG+AGG + chr1.3:74205958-74205977 MS.gene029509:CDS 50.0%
CAATCTCGCGCTTCACCTTA+TGG + chr1.3:74205990-74206009 MS.gene029509:CDS 50.0%
CAGATGGAATACGACCAAGC+AGG - chr1.3:74209128-74209147 None:intergenic 50.0%
CAGCAGGCACATAGATAGCT+TGG - chr1.3:74209239-74209258 None:intergenic 50.0%
CATAAGGTGAAGCGCGAGAT+TGG - chr1.3:74205992-74206011 None:intergenic 50.0%
CCTGCTTGCACCATACCAAA+GGG + chr1.3:74207391-74207410 MS.gene029509:CDS 50.0%
CTGCTTGCACCATACCAAAG+GGG + chr1.3:74207392-74207411 MS.gene029509:CDS 50.0%
CTTAAGTCAGCCTTTCCACG+TGG + chr1.3:74209665-74209684 MS.gene029509:CDS 50.0%
GAGCATTTCCGTGATGCTGA+AGG + chr1.3:74207880-74207899 MS.gene029509:CDS 50.0%
GGATGGAGAGTTCTCAACAC+TGG + chr1.3:74206329-74206348 MS.gene029509:CDS 50.0%
GGTCGTATTCCATCTGCTGT+TGG + chr1.3:74209132-74209151 MS.gene029509:CDS 50.0%
GGTGGTTTCTCTGTGTTTGC+TGG + chr1.3:74207590-74207609 MS.gene029509:intron 50.0%
GTAATTGGCAGCAGCAAGCT+TGG + chr1.3:74208124-74208143 MS.gene029509:intron 50.0%
GTTGGAAGTGGCTCAGCATT+TGG + chr1.3:74206253-74206272 MS.gene029509:CDS 50.0%
GTTGGAGAAAGAACCCGTGA+GGG + chr1.3:74207614-74207633 MS.gene029509:CDS 50.0%
GTTGTACACCACGAGCAGTT+TGG - chr1.3:74209533-74209552 None:intergenic 50.0%
GTTTCGATGAAGATCGGCGA+AGG - chr1.3:74205935-74205954 None:intergenic 50.0%
TCAAGAGCAGTCAAGATCGG+AGG - chr1.3:74206206-74206225 None:intergenic 50.0%
TCCGATCTTGACTGCTCTTG+AGG + chr1.3:74206205-74206224 MS.gene029509:CDS 50.0%
TGCTACCACCTTTGCTCACT+TGG + chr1.3:74209281-74209300 MS.gene029509:CDS 50.0%
TGTTGGAGAAAGAACCCGTG+AGG + chr1.3:74207613-74207632 MS.gene029509:CDS 50.0%
! CATTTAGGTTCCCGTTGGCA+GGG + chr1.3:74207011-74207030 MS.gene029509:intron 50.0%
!! CTGAAGGTGTTGTTCGTGGA+TGG + chr1.3:74206312-74206331 MS.gene029509:CDS 50.0%
!! GCTACTGAAGGTGTTGTTCG+TGG + chr1.3:74206308-74206327 MS.gene029509:CDS 50.0%
!! GGTTGGTAACCAACAGCAGA+TGG - chr1.3:74209144-74209163 None:intergenic 50.0%
!! TTGTTTGGTGGTGCTGGTGT+AGG + chr1.3:74207428-74207447 MS.gene029509:CDS 50.0%
AAAAAGGAGGTTCCCGGAGG+TGG + chr1.3:74206086-74206105 MS.gene029509:CDS 55.0%
AAAAGGAGGTTCCCGGAGGT+GGG + chr1.3:74206087-74206106 MS.gene029509:CDS 55.0%
AGCGGTCGGTCAAGTTTGTC+AGG + chr1.3:74206139-74206158 MS.gene029509:CDS 55.0%
CACGTGGCAGAAGTCTTCAC+TGG + chr1.3:74209681-74209700 MS.gene029509:CDS 55.0%
CAGTGAAGACTTCTGCCACG+TGG - chr1.3:74209683-74209702 None:intergenic 55.0%
CCCTTTGGTATGGTGCAAGC+AGG - chr1.3:74207394-74207413 None:intergenic 55.0%
CGGTTGCATAATCAGCGACG+CGG - chr1.3:74206028-74206047 None:intergenic 55.0%
CTTGCACCATACCAAAGGGG+AGG + chr1.3:74207395-74207414 MS.gene029509:CDS 55.0%
GAGCACTACCAAACTGCTCG+TGG + chr1.3:74209522-74209541 MS.gene029509:CDS 55.0%
GTGGCTCAGCATTTGGGTGA+AGG + chr1.3:74206260-74206279 MS.gene029509:CDS 55.0%
! CGTCGCTGATTATGCAACCG+CGG + chr1.3:74206028-74206047 MS.gene029509:CDS 55.0%
! GCATTTAGGTTCCCGTTGGC+AGG + chr1.3:74207010-74207029 MS.gene029509:intron 55.0%
!! GGAGGTTAGCCTCGATGTTG+AGG - chr1.3:74205970-74205989 None:intergenic 55.0%
AGGTGAAGCGCGAGATTGGG+AGG - chr1.3:74205988-74206007 None:intergenic 60.0%
CCGGCGAAAAAGGAGGTTCC+CGG + chr1.3:74206080-74206099 MS.gene029509:CDS 60.0%
GAAGTCTTCACTGGTGCCCC+AGG + chr1.3:74209690-74209709 MS.gene029509:CDS 60.0%
GCAAAGGTGGTAGCAGGAGC+AGG - chr1.3:74209276-74209295 None:intergenic 60.0%
GCGAAAAAGGAGGTTCCCGG+AGG + chr1.3:74206083-74206102 MS.gene029509:CDS 60.0%
GGTCAGATGAATGAGCCCCC+TGG + chr1.3:74207817-74207836 MS.gene029509:CDS 60.0%
TCCAAGGGTAGCCCTGCCAA+CGG - chr1.3:74207025-74207044 None:intergenic 60.0%
!! CCGGGAACCTCCTTTTTCGC+CGG - chr1.3:74206083-74206102 None:intergenic 60.0%
!! GGAACCTCCTTTTTCGCCGG+AGG - chr1.3:74206080-74206099 None:intergenic 60.0%
!! TCAGAGGTGTCTGCCCTGCT+TGG + chr1.3:74209111-74209130 MS.gene029509:CDS 60.0%
!! TTTTTCGCCGGAGGCGCAGA+CGG - chr1.3:74206071-74206090 None:intergenic 60.0%
CCAAGGGTAGCCCTGCCAAC+GGG - chr1.3:74207024-74207043 None:intergenic 65.0%
GTCTGCGCCTCCGGCGAAAA+AGG + chr1.3:74206070-74206089 MS.gene029509:CDS 65.0%
TGCGCCTCCGGCGAAAAAGG+AGG + chr1.3:74206073-74206092 MS.gene029509:CDS 65.0%
! CGTGCCCGTGTCGGTCTTAC+TGG + chr1.3:74207844-74207863 MS.gene029509:CDS 65.0%
ACACGGGCACGAGCACCAGG+GGG - chr1.3:74207835-74207854 None:intergenic 70.0%
ACCAGCTCCGTCTGCGCCTC+CGG + chr1.3:74206061-74206080 MS.gene029509:CDS 70.0%
AGGCGCAGACGGAGCTGGTG+CGG - chr1.3:74206060-74206079 None:intergenic 70.0%
CCCGTTGGCAGGGCTACCCT+TGG + chr1.3:74207021-74207040 MS.gene029509:CDS 70.0%
CCTGGTGCTCGTGCCCGTGT+CGG + chr1.3:74207835-74207854 MS.gene029509:CDS 70.0%
CGACACGGGCACGAGCACCA+GGG - chr1.3:74207837-74207856 None:intergenic 70.0%
GACACGGGCACGAGCACCAG+GGG - chr1.3:74207836-74207855 None:intergenic 70.0%
CCGACACGGGCACGAGCACC+AGG - chr1.3:74207838-74207857 None:intergenic 75.0%
CGCAGACGGAGCTGGTGCGG+CGG - chr1.3:74206057-74206076 None:intergenic 75.0%
! AGCTGGTGCGGCGGCAGCCG+CGG - chr1.3:74206048-74206067 None:intergenic 80.0%
!! GCCGGAGGCGCAGACGGAGC+TGG - chr1.3:74206065-74206084 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 74205891 74209752 74205891 ID=MS.gene029509
chr1.3 mRNA 74205891 74209752 74205891 ID=MS.gene029509.t1;Parent=MS.gene029509
chr1.3 exon 74205891 74206364 74205891 ID=MS.gene029509.t1.exon1;Parent=MS.gene029509.t1
chr1.3 CDS 74205891 74206364 74205891 ID=cds.MS.gene029509.t1;Parent=MS.gene029509.t1
chr1.3 exon 74207018 74207093 74207018 ID=MS.gene029509.t1.exon2;Parent=MS.gene029509.t1
chr1.3 CDS 74207018 74207093 74207018 ID=cds.MS.gene029509.t1;Parent=MS.gene029509.t1
chr1.3 exon 74207200 74207288 74207200 ID=MS.gene029509.t1.exon3;Parent=MS.gene029509.t1
chr1.3 CDS 74207200 74207288 74207200 ID=cds.MS.gene029509.t1;Parent=MS.gene029509.t1
chr1.3 exon 74207383 74207500 74207383 ID=MS.gene029509.t1.exon4;Parent=MS.gene029509.t1
chr1.3 CDS 74207383 74207500 74207383 ID=cds.MS.gene029509.t1;Parent=MS.gene029509.t1
chr1.3 exon 74207591 74207694 74207591 ID=MS.gene029509.t1.exon5;Parent=MS.gene029509.t1
chr1.3 CDS 74207591 74207694 74207591 ID=cds.MS.gene029509.t1;Parent=MS.gene029509.t1
chr1.3 exon 74207790 74207948 74207790 ID=MS.gene029509.t1.exon6;Parent=MS.gene029509.t1
chr1.3 CDS 74207790 74207948 74207790 ID=cds.MS.gene029509.t1;Parent=MS.gene029509.t1
chr1.3 exon 74209105 74209329 74209105 ID=MS.gene029509.t1.exon7;Parent=MS.gene029509.t1
chr1.3 CDS 74209105 74209329 74209105 ID=cds.MS.gene029509.t1;Parent=MS.gene029509.t1
chr1.3 exon 74209441 74209752 74209441 ID=MS.gene029509.t1.exon8;Parent=MS.gene029509.t1
chr1.3 CDS 74209441 74209752 74209441 ID=cds.MS.gene029509.t1;Parent=MS.gene029509.t1
Gene Sequence

>MS.gene029509

ATGGCTTCACGCAGATTGGTATCATCTCTGATTCGATCTTCCCTTCGCCGATCTTCATCGAAACCATCAATCACTGCCTCAACATCGAGGCTAACCTCCCAATCTCGCGCTTCACCTTATGGCTACCTCTTAAACCGCGTCGCTGATTATGCAACCGCGGCTGCCGCCGCACCAGCTCCGTCTGCGCCTCCGGCGAAAAAGGAGGTTCCCGGAGGTGGGAAAATTACTGATGAATTTACTGGAAAAGGAGCGGTCGGTCAAGTTTGTCAGGTTATTGGTGCCGTCGTTGACGTCAGATTTGAAGAAGGTTTGCCTCCGATCTTGACTGCTCTTGAGGTTCTAGATCATTCTTCGAGATTGGTGTTGGAAGTGGCTCAGCATTTGGGTGAAGGTGTTGTGAGAACCATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGAGAGTTCTCAACACTGGTTCTCCCATCAGTGTAAATATCTATTCAATTTATTTCATTCAATTTTCATTTCTGAATTTTTTTTTGACTTTACTGGAGTTTTCACTGTTTGTGAGATCTGATTTTGAGATAATTTTGGTTTGAATTTTTATGTTGCGTTTCATGGATCTGGTGTATTTTTTTCTCATTATGTAATTACGTAATTGATTAAGTTTTGATTTTTTGAGAAGGAAATTTGATTTTGTTTTTATTGTTTTTTGATTGTGGATGCATGAATAATGATGTCAATCCTCGATAAATGGGGTCTTTTTAATGGCGCCTGTTTGGTTTGGGCAATTTATCCGTTTAATTTACTGTAATCACGTTTAAATGCAAAGTTGTACGCTGTACATATTTTAAATGGGATATTTTTGCAATTAAAAGTAAAAGCAGGAAATGATGAAACCACATGTGTCTGTGTTACTCTGTCAGTGCTACATAGCTATATAGTTATATTGCTTTTGTGAATGTGATGTGATCCATTTGCTCCAATTTGACTTTCTTTTGGATTTGAATCTTGCAAGCACGGATTTTCCTGCTATTGGTTTTTACTTTTGATTATTGTGTCTGTCACTACCGTTTAATTTCTATAACTTTTCCAAAAAGCGTTTTAAGTATGTTCTAACATTGTTGTGTATTGCATTTAGGTTCCCGTTGGCAGGGCTACCCTTGGACGTATCATGAATGTTATTGGAGAACCTATCGATCATAAAGGCGAATTCAGTAAGAAACCTCTAAATTTATTTTCAGTCTAATTGATACAATAAAGTATTTTCTATCAATTCCATAGTGATTTTCAACTGATGATAATTTTTCTGAATTGCTTTAGAAACCGAGCATTATTTGCCTATTCATAGAGAAGCTCCTGCTTTTGTTGAGCAAGCAACTGAACAACAGATCCTTGTTACTGGTATTAAGGTAATTGTGAATGCATCAATCCCATTTCCTTAAATCTTTTTATGGGCAAATATATAATGACTTTACACCAATTTTGCCTTATTTTTTTTCATAGGTTGTAGACCTGCTTGCACCATACCAAAGGGGAGGAAAGATTGGATTGTTTGGTGGTGCTGGTGTAGGAAAAACAGTTCTTATTATGGAACTTATCAACAATGTTGCTAAGGCTCATGGTATATCCTAACTTAATGCTTTAGCGCTTAACTTATTCTTATTGAGATGCTATTTTTCTATGTTGTATGCTGAGTGTTTCCATATAATAGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAAAGAACCCGTGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTGGGTGAAAAGCAGGTGAACACAATGCTTTAATTCATGATCCACATTCAATAATATTGTTCATACTATTTTCATGTATCAAAGTCGTTAATTATGGTTGTTTAATGCAGAGTGAGAGCAAATGTGCTCTTGTGTATGGTCAGATGAATGAGCCCCCTGGTGCTCGTGCCCGTGTCGGTCTTACTGGACTTACTGTTGCTGAGCATTTCCGTGATGCTGAAGGACAAGATGTGCTGCTTTTTGTTGACAACATTTTCCGCTTTACTCAAGTAAGCACCAAAATTTAAATCATGCACCCAAAACTTACTAATGCAAACTGAACTGTAGATTTTAGTAACAGTTTGTTCACATAACTGCACGCTTACATTCCAAACCGAACTGTGTGCTATTGAACTGTTGGTTATTTAATTTAATATTGTGTTGAACACATGTTCTTTGTGTTTGGTAATTGGCAGCAGCAAGCTTGGTCACTATTTTTTCCGTGTTTGTGTCTGAAACTTGCTACATAGTTTAAATTAAGCATGAAAAATAAATTAAAGCAAGAGTTTAGCCTTTTCTACTTGCTTTTTGCACTCACACTGCCTTAAATTAAGCTCCAAAAATAAATTAAATCTTTAATTTATGTATATATGTTTCTGATAATTAAATTAAATTTTGTTGGTAAAAAATGAGCAAAATTACAATTTTAGTCCCTTAACTTAATTTCAGGTAATGTTTTGGTCCTTTATCCTTTTTTTATTCCATTTTTGTCCTATTGGTTCATCTGCATTTGAATTTTCAAGCTTGAAATCCACGGTTTTCTTTTGCGGCCTTTCAATCTTCAAATATGTGGGTCTTTCATCTATGTTTTTGTATGAATCTTAAATTTTAAGCTTGAAAATCCATATGCAAAAGGACAAACTGCAATGAAAAAAGATAAAGGACCTAACTATTGCCTGAAATTAAGTTAAGGACTAAACGTGCAATTTTGCCTAAAAAATGTAATTCCACTTTTGGTATTTTTTTCACACAGTTTGCTGCAATGGAACAAACCGTGACACCAAATTTTCCTAAAACACGCAATTTATTAGCTCGATAGAATCAGGTTTTTTTCACAATAAGTGATGATGGTTTGACACAGACCATAATAATAGCTATACACAGTTAAATTTTTTAATTTTAGAACTAGTTCGGTAGGGAAGCATAAGAACCACTGGACTGAACATTAAAATAGTTCAATTTGGTTCAAGATTAAACACAAGCAGTTCGATTTGGTTTAGGTAAACTATTTTTTTGGGTTTGGTTCAGTTTTCCATACTAACCAAACCATGAACAACCGTAATGTTTGGTTTTTATGTATGGTTTTTTATAGATGGACGTTGTTCTTATCCTTTTTATCATTGTCTATTTATGTGATGTGATATATGATGCCTGATGTAATTGTAGGCTAACTCAGAGGTGTCTGCCCTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTGTCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATCTATGTGCCTGCTGATGATTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACAACAGTGTTGTCTAGACAGGTTTGATTATTATGTTACTATTCATTAAACTGAAGTTGAAATCATAATAATTTTTTTTTGTTATCATAGTCAAGAACTAAATGATCTTATTTCGGTATATATTGAAAATAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTCGTATGCTTTCTCCACTTATTTTGGGTGATGAGCACTACCAAACTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAGATATCATTGCTATTCTGGGAATGGATGAGCTTAGTGAAGATGATAAATTGACTGTTGCACGTGCCCGTAAAATTCAACGATTCTTAAGTCAGCCTTTCCACGTGGCAGAAGTCTTCACTGGTGCCCCAGGCAAATATGTTGAGTTGAAGGAGAACACTCAAAGTTTCCAG
Protein sequence

>MS.gene029509.t1

MASRRLVSSLIRSSLRRSSSKPSITASTSRLTSQSRASPYGYLLNRVADYATAAAAAPAPSAPPAKKEVPGGGKITDEFTGKGAVGQVCQVIGAVVDVRFEEGLPPILTALEVLDHSSRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPISVPVGRATLGRIMNVIGEPIDHKGEFKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGDEHYQTARGVQQVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENTQSFQ