Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029510.t1 | XP_003592582.2 | 98.7 | 559 | 7 | 0 | 1 | 559 | 1 | 559 | 7.40E-291 | 1009.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029510.t1 | Q01859 | 83.5 | 559 | 85 | 2 | 1 | 559 | 1 | 552 | 1.4e-261 | 903.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029510.t1 | G7IAW2 | 98.7 | 559 | 7 | 0 | 1 | 559 | 1 | 559 | 5.3e-291 | 1009.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029510 | MS.gene71744 | PPI |
| MS.gene75019 | MS.gene029510 | PPI |
| MS.gene006231 | MS.gene029510 | PPI |
| MS.gene43955 | MS.gene029510 | PPI |
| MS.gene029511 | MS.gene029510 | PPI |
| MS.gene035640 | MS.gene029510 | PPI |
| MS.gene30654 | MS.gene029510 | PPI |
| MS.gene029509 | MS.gene029510 | PPI |
| MS.gene49154 | MS.gene029510 | PPI |
| MS.gene036419 | MS.gene029510 | PPI |
| MS.gene75018 | MS.gene029510 | PPI |
| MS.gene57960 | MS.gene029510 | PPI |
| MS.gene061126 | MS.gene029510 | PPI |
| MS.gene60613 | MS.gene029510 | PPI |
| MS.gene029508 | MS.gene029510 | PPI |
| MS.gene012472 | MS.gene029510 | PPI |
| MS.gene71744 | MS.gene029510 | PPI |
| MS.gene62607 | MS.gene029510 | PPI |
| MS.gene055477 | MS.gene029510 | PPI |
| MS.gene040499 | MS.gene029510 | PPI |
| MS.gene73458 | MS.gene029510 | PPI |
| MS.gene029510 | MS.gene75018 | PPI |
| MS.gene005079 | MS.gene029510 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029510.t1 | MTR_1g108770 | 99.284 | 559 | 4 | 0 | 1 | 559 | 1 | 559 | 0.0 | 1134 |
| MS.gene029510.t1 | MTR_1g108765 | 93.023 | 559 | 36 | 3 | 1 | 559 | 1 | 556 | 0.0 | 1009 |
| MS.gene029510.t1 | MTR_7g021780 | 69.703 | 472 | 136 | 3 | 85 | 550 | 17 | 487 | 0.0 | 629 |
| MS.gene029510.t1 | MTR_4g451275 | 69.474 | 475 | 138 | 3 | 85 | 553 | 17 | 490 | 0.0 | 629 |
| MS.gene029510.t1 | MTR_3g035730 | 68.842 | 475 | 141 | 3 | 85 | 553 | 17 | 490 | 0.0 | 622 |
| MS.gene029510.t1 | MTR_0002s0650 | 68.817 | 465 | 136 | 4 | 89 | 547 | 21 | 482 | 0.0 | 615 |
| MS.gene029510.t1 | MTR_7g033765 | 68.904 | 447 | 132 | 3 | 85 | 525 | 17 | 462 | 0.0 | 585 |
| MS.gene029510.t1 | MTR_7g033755 | 61.247 | 449 | 106 | 4 | 107 | 550 | 1 | 386 | 4.47e-178 | 512 |
| MS.gene029510.t1 | MTR_2g066870 | 60.152 | 394 | 143 | 5 | 162 | 552 | 29 | 411 | 3.69e-158 | 458 |
| MS.gene029510.t1 | MTR_1829s0010 | 76.577 | 222 | 52 | 0 | 319 | 540 | 1 | 222 | 3.64e-119 | 355 |
| MS.gene029510.t1 | MTR_7g117920 | 65.248 | 282 | 91 | 3 | 85 | 360 | 17 | 297 | 1.08e-108 | 328 |
| MS.gene029510.t1 | MTR_6g055020 | 63.774 | 265 | 89 | 3 | 85 | 343 | 17 | 280 | 2.87e-97 | 297 |
| MS.gene029510.t1 | MTR_2g066860 | 57.927 | 164 | 53 | 5 | 1 | 162 | 2 | 151 | 8.24e-47 | 162 |
| MS.gene029510.t1 | MTR_1g076100 | 70.000 | 80 | 24 | 0 | 376 | 455 | 5 | 84 | 6.12e-32 | 118 |
| MS.gene029510.t1 | MTR_4g010980 | 47.015 | 134 | 65 | 2 | 86 | 213 | 15 | 148 | 1.84e-28 | 111 |
| MS.gene029510.t1 | MTR_1g112870 | 28.642 | 405 | 251 | 12 | 118 | 496 | 52 | 444 | 1.06e-27 | 117 |
| MS.gene029510.t1 | MTR_7g081010 | 28.713 | 404 | 251 | 13 | 118 | 496 | 51 | 442 | 1.24e-27 | 116 |
| MS.gene029510.t1 | MTR_4g005410 | 28.313 | 332 | 212 | 9 | 183 | 496 | 203 | 526 | 4.44e-26 | 113 |
| MS.gene029510.t1 | MTR_5g090750 | 76.786 | 56 | 13 | 0 | 459 | 514 | 21 | 76 | 9.31e-23 | 92.4 |
| MS.gene029510.t1 | MTR_0002s0550 | 24.104 | 502 | 310 | 17 | 88 | 556 | 29 | 492 | 7.56e-19 | 90.1 |
| MS.gene029510.t1 | MTR_0212s0040 | 25.253 | 297 | 201 | 4 | 153 | 437 | 90 | 377 | 2.55e-18 | 89.4 |
| MS.gene029510.t1 | MTR_2g009560 | 45.833 | 72 | 36 | 1 | 480 | 551 | 3 | 71 | 9.66e-14 | 67.4 |
| MS.gene029510.t1 | MTR_3g099550 | 73.333 | 45 | 12 | 0 | 101 | 145 | 10 | 54 | 1.06e-13 | 67.8 |
| MS.gene029510.t1 | MTR_3g065340 | 59.259 | 54 | 21 | 1 | 88 | 141 | 55 | 107 | 2.75e-13 | 67.8 |
| MS.gene029510.t1 | MTR_7g498250 | 70.833 | 48 | 12 | 2 | 1 | 48 | 1 | 46 | 7.03e-11 | 60.5 |
| MS.gene029510.t1 | MTR_7g498250 | 70.833 | 48 | 12 | 2 | 1 | 48 | 1 | 46 | 9.14e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029510.t1 | AT5G08680 | 84.351 | 524 | 75 | 2 | 38 | 559 | 41 | 559 | 0.0 | 902 |
| MS.gene029510.t1 | AT5G08690 | 84.121 | 529 | 77 | 2 | 33 | 559 | 33 | 556 | 0.0 | 891 |
| MS.gene029510.t1 | AT5G08670 | 84.181 | 531 | 76 | 3 | 32 | 559 | 31 | 556 | 0.0 | 890 |
| MS.gene029510.t1 | ATCG00480 | 68.267 | 479 | 145 | 3 | 85 | 557 | 17 | 494 | 0.0 | 631 |
| MS.gene029510.t1 | AT1G20260 | 28.642 | 405 | 251 | 12 | 118 | 496 | 50 | 442 | 2.16e-28 | 119 |
| MS.gene029510.t1 | AT1G76030 | 28.822 | 399 | 248 | 11 | 118 | 492 | 50 | 436 | 4.62e-28 | 118 |
| MS.gene029510.t1 | AT4G38510 | 28.218 | 404 | 253 | 12 | 118 | 496 | 58 | 449 | 1.01e-27 | 117 |
| MS.gene029510.t1 | AT4G38510 | 28.218 | 404 | 253 | 12 | 118 | 496 | 51 | 442 | 1.01e-27 | 117 |
| MS.gene029510.t1 | AT4G38510 | 28.218 | 404 | 253 | 12 | 118 | 496 | 51 | 442 | 1.01e-27 | 117 |
| MS.gene029510.t1 | AT4G38510 | 28.218 | 404 | 253 | 12 | 118 | 496 | 51 | 442 | 1.01e-27 | 117 |
| MS.gene029510.t1 | AT4G38510 | 28.218 | 404 | 253 | 12 | 118 | 496 | 51 | 442 | 1.01e-27 | 117 |
| MS.gene029510.t1 | AT1G78900 | 27.635 | 351 | 223 | 10 | 211 | 544 | 229 | 565 | 3.23e-26 | 113 |
| MS.gene029510.t1 | AT1G78900 | 27.635 | 351 | 223 | 10 | 211 | 544 | 229 | 565 | 3.23e-26 | 113 |
| MS.gene029510.t1 | ATMG01190 | 25.667 | 300 | 202 | 4 | 150 | 437 | 87 | 377 | 2.53e-19 | 91.7 |
| MS.gene029510.t1 | AT2G07698 | 25.589 | 297 | 200 | 4 | 153 | 437 | 360 | 647 | 1.07e-18 | 90.5 |
| MS.gene029510.t1 | ATCG00120 | 24.651 | 430 | 271 | 14 | 101 | 513 | 54 | 447 | 6.74e-17 | 84.3 |
Find 0 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAACTAAATAATTTGATT+TGG | + | 8714:4033-4052 | MS.gene029510:intron | 10.0% |
| !!! | ATATTTTTTAACTAAAATAC+CGG | - | 8714:4723-4742 | None:intergenic | 10.0% |
| !! | AAAACAAGAAACTTAATTAA+TGG | - | 8714:2313-2332 | None:intergenic | 15.0% |
| !! | ATTATAACTCTCATATTAAA+AGG | - | 8714:3684-3703 | None:intergenic | 15.0% |
| !! | TTTCTATTATGAAGAATATT+AGG | + | 8714:2251-2270 | MS.gene029510:intron | 15.0% |
| !!! | GTTTAAATTAAGGTTTTTAT+AGG | + | 8714:4693-4712 | MS.gene029510:intron | 15.0% |
| !!! | TAATTAAGTTTCTTGTTTTA+TGG | + | 8714:2314-2333 | MS.gene029510:intron | 15.0% |
| !! | ACCAAAAATATCATTACAAT+TGG | - | 8714:4006-4025 | None:intergenic | 20.0% |
| !! | GTAACAAATAAAACATACAA+TGG | + | 8714:2007-2026 | MS.gene029510:intron | 20.0% |
| !! | TGAAAAAAATCATGTAAGAT+TGG | - | 8714:3027-3046 | None:intergenic | 20.0% |
| !! | TTTATCAAAGTTCTTAACTA+TGG | + | 8714:3419-3438 | MS.gene029510:intron | 20.0% |
| !!! | AATGAAAAGTATAAACTATG+TGG | - | 8714:2581-2600 | None:intergenic | 20.0% |
| !!! | ATGAAAAGTATAAACTATGT+GGG | - | 8714:2580-2599 | None:intergenic | 20.0% |
| !!! | TTACATGATTTTTTTCATAC+AGG | + | 8714:3030-3049 | MS.gene029510:intron | 20.0% |
| ! | AAAAACATTGTTAGAGCAAA+TGG | - | 8714:2793-2812 | None:intergenic | 25.0% |
| ! | AACAAGTATTTACACTGATA+GGG | - | 8714:1804-1823 | None:intergenic | 25.0% |
| ! | AAGATTACAGATGAATTTAC+TGG | + | 8714:1556-1575 | MS.gene029510:CDS | 25.0% |
| ! | AATACTCGAAGCTTATTATA+AGG | + | 8714:4615-4634 | MS.gene029510:intron | 25.0% |
| ! | ATACTCGAAGCTTATTATAA+GGG | + | 8714:4616-4635 | MS.gene029510:intron | 25.0% |
| ! | ATATAGATAGTGATTAGTGA+AGG | - | 8714:4567-4586 | None:intergenic | 25.0% |
| ! | ATTAGTTCATAGAGAAAATC+CGG | - | 8714:4859-4878 | None:intergenic | 25.0% |
| ! | GAAGTAATTTAATCAGTGAA+TGG | - | 8714:2150-2169 | None:intergenic | 25.0% |
| ! | TATTGAAAAGAAAATTCCCA+AGG | - | 8714:4599-4618 | None:intergenic | 25.0% |
| ! | TGTTTATATACACTTCTTTC+TGG | + | 8714:4662-4681 | MS.gene029510:intron | 25.0% |
| !! | ATGTTTTTCTATCAATTCCA+TGG | + | 8714:2805-2824 | MS.gene029510:intron | 25.0% |
| !! | ATTTCTTCAATCTAAGATGA+TGG | - | 8714:1890-1909 | None:intergenic | 25.0% |
| !! | GCCAATTGTAATGATATTTT+TGG | + | 8714:4002-4021 | MS.gene029510:intron | 25.0% |
| !! | TAAGGTTTTTATAGGAAAAC+CGG | + | 8714:4701-4720 | MS.gene029510:intron | 25.0% |
| !! | TGAAAAGTATAAACTATGTG+GGG | - | 8714:2579-2598 | None:intergenic | 25.0% |
| !! | TTATTTGTTACAAACACGAA+AGG | - | 8714:1998-2017 | None:intergenic | 25.0% |
| !!! | CAAGATATCATTGCTATTTT+GGG | + | 8714:4211-4230 | MS.gene029510:CDS | 25.0% |
| !!! | CATTTCATTTTTTCTACTAG+TGG | + | 8714:4453-4472 | MS.gene029510:intron | 25.0% |
| !!! | GGAAGTGTTTGTTTAAATTA+AGG | + | 8714:4683-4702 | MS.gene029510:intron | 25.0% |
| !!! | TCAAGATATCATTGCTATTT+TGG | + | 8714:4210-4229 | MS.gene029510:CDS | 25.0% |
| AAAGAAAATTCCCAAGGAAT+AGG | - | 8714:4593-4612 | None:intergenic | 30.0% | |
| ACAAGTATTTACACTGATAG+GGG | - | 8714:1803-1822 | None:intergenic | 30.0% | |
| ACAGATGAATTTACTGGTAA+AGG | + | 8714:1562-1581 | MS.gene029510:CDS | 30.0% | |
| ACTTATTAACAATGTCGCAA+AGG | + | 8714:3141-3160 | MS.gene029510:CDS | 30.0% | |
| AGAAACCACCTGATAATAAA+TGG | - | 8714:3265-3284 | None:intergenic | 30.0% | |
| AGGAAAAACTGTGCTTATTA+TGG | + | 8714:3117-3136 | MS.gene029510:CDS | 30.0% | |
| ATAATGCCTGATGTAATTGT+AGG | + | 8714:3715-3734 | MS.gene029510:intron | 30.0% | |
| ATCTATATGAACCTATTCCT+TGG | + | 8714:4579-4598 | MS.gene029510:intron | 30.0% | |
| ATGAATAGGCAAAAAATGCT+CGG | - | 8714:2875-2894 | None:intergenic | 30.0% | |
| ATTTGCATACTTGAGTAAAG+CGG | - | 8714:3608-3627 | None:intergenic | 30.0% | |
| CTCAAGTATGCAAATTATCT+AGG | + | 8714:3613-3632 | MS.gene029510:intron | 30.0% | |
| GAACAAGTATTTACACTGAT+AGG | - | 8714:1805-1824 | None:intergenic | 30.0% | |
| GAGTGTTTCCATTTATTATC+AGG | + | 8714:3254-3273 | MS.gene029510:intron | 30.0% | |
| TAAGTTCCTGTATGATCATA+AGG | - | 8714:4421-4440 | None:intergenic | 30.0% | |
| TATAGAGAAATGATTGAGAG+TGG | + | 8714:3332-3351 | MS.gene029510:CDS | 30.0% | |
| TATTGATGAAGTCATTGCAA+AGG | + | 8714:4942-4961 | MS.gene029510:CDS | 30.0% | |
| TCTATATGAACCTATTCCTT+GGG | + | 8714:4580-4599 | MS.gene029510:intron | 30.0% | |
| TGATCATACAGGAACTTATT+TGG | + | 8714:4423-4442 | MS.gene029510:intron | 30.0% | |
| TGTTTCCATTTATTATCAGG+TGG | + | 8714:3257-3276 | MS.gene029510:intron | 30.0% | |
| TTTCTCTATGAACTAATGCA+GGG | + | 8714:4862-4881 | MS.gene029510:intron | 30.0% | |
| ! | AGAGAATTGTACTAGTTTCA+AGG | + | 8714:4363-4382 | MS.gene029510:CDS | 30.0% |
| ! | ATGAGTTGAAAAACATTCCA+TGG | - | 8714:2825-2844 | None:intergenic | 30.0% |
| ! | GATGATGGTGATATATAGAT+TGG | - | 8714:1875-1894 | None:intergenic | 30.0% |
| ! | TATGCTTTCACCACTTATTT+TGG | + | 8714:4126-4145 | MS.gene029510:CDS | 30.0% |
| ! | TCTTAACTATGGTTGTTTCA+TGG | + | 8714:3430-3449 | MS.gene029510:intron | 30.0% |
| ! | TGGACTGAAAAAAGATTTTG+AGG | - | 8714:2773-2792 | None:intergenic | 30.0% |
| ! | TGTAAAATGCTTGTTCTGAA+AGG | - | 8714:4912-4931 | None:intergenic | 30.0% |
| ! | TTCAGAACAAGCATTTTACA+TGG | + | 8714:4912-4931 | MS.gene029510:CDS | 30.0% |
| ! | TTTTCTCTATGAACTAATGC+AGG | + | 8714:4861-4880 | MS.gene029510:intron | 30.0% |
| !! | ATGCTTTCACCACTTATTTT+GGG | + | 8714:4127-4146 | MS.gene029510:CDS | 30.0% |
| !!! | TATCATTGCTATTTTGGGAA+TGG | + | 8714:4216-4235 | MS.gene029510:CDS | 30.0% |
| AAATCCGGTCAAATTGTTTG+TGG | - | 8714:4844-4863 | None:intergenic | 35.0% | |
| AAGCAACTTCCAAACAAATC+TGG | - | 8714:4534-4553 | None:intergenic | 35.0% | |
| AATGCTTGTGAATTCCATTC+AGG | + | 8714:2664-2683 | MS.gene029510:intron | 35.0% | |
| AATTCGCCTTTATGATCGAT+AGG | - | 8714:2740-2759 | None:intergenic | 35.0% | |
| ATACGAGATGTTGAATCCAA+TGG | - | 8714:4109-4128 | None:intergenic | 35.0% | |
| ATTCGCAAATACCTTGATAC+CGG | - | 8714:2950-2969 | None:intergenic | 35.0% | |
| CAATCCACAAACAATTTGAC+CGG | + | 8714:4837-4856 | MS.gene029510:intron | 35.0% | |
| GAACAACAAATTCTTGTGAC+CGG | + | 8714:2928-2947 | MS.gene029510:CDS | 35.0% | |
| GAAGATTGCTAAGGAAAATG+CGG | + | 8714:4969-4988 | MS.gene029510:CDS | 35.0% | |
| GGACGTATCATGAATGTTAT+TGG | + | 8714:2710-2729 | MS.gene029510:CDS | 35.0% | |
| GTATGATCATAAGGAAAGCA+TGG | - | 8714:4412-4431 | None:intergenic | 35.0% | |
| GTTGCTTGTTCAACAAAAGT+AGG | - | 8714:2907-2926 | None:intergenic | 35.0% | |
| TGATTGAGAAGAAGAGATTC+TGG | - | 8714:1416-1435 | None:intergenic | 35.0% | |
| TGCTTTCCTTATGATCATAC+AGG | + | 8714:4412-4431 | MS.gene029510:intron | 35.0% | |
| TGGATTGCATAGAAACAAAC+TGG | - | 8714:4824-4843 | None:intergenic | 35.0% | |
| TGTTGTGAGAACTATTGCTA+TGG | + | 8714:1729-1748 | MS.gene029510:CDS | 35.0% | |
| TTAATCCAGTAAGACCAACA+CGG | - | 8714:3521-3540 | None:intergenic | 35.0% | |
| TTATGGTGAAGTTCTTTGCA+AGG | + | 8714:2331-2350 | MS.gene029510:intron | 35.0% | |
| ! | AGCAAATGTGCTCTTGTTTA+TGG | + | 8714:3465-3484 | MS.gene029510:CDS | 35.0% |
| ! | ATGATTTGGATAGAGATGGA+CGG | - | 8714:1375-1394 | None:intergenic | 35.0% |
| ! | GAACAAGCATTTTACATGGT+TGG | + | 8714:4916-4935 | MS.gene029510:CDS | 35.0% |
| ! | GCTCAATCTCAACTTTCTTT+TGG | + | 8714:2526-2545 | MS.gene029510:intron | 35.0% |
| !! | GGTCACAAGAATTTGTTGTT+CGG | - | 8714:2929-2948 | None:intergenic | 35.0% |
| AAAGGCAGAGAAGATTGCTA+AGG | + | 8714:4960-4979 | MS.gene029510:CDS | 40.0% | |
| AACATAGATAGCTTGGACAG+AGG | - | 8714:3864-3883 | None:intergenic | 40.0% | |
| AACTATTGCTATGGATGCCA+CGG | + | 8714:1738-1757 | MS.gene029510:CDS | 40.0% | |
| AACTTCCAAACAAATCTGGC+AGG | - | 8714:4530-4549 | None:intergenic | 40.0% | |
| AATTCTTGTGACCGGTATCA+AGG | + | 8714:2936-2955 | MS.gene029510:CDS | 40.0% | |
| ACATTGTCTACTGATCTTGG+AGG | + | 8714:3797-3816 | MS.gene029510:CDS | 40.0% | |
| ACGGTTAAGAAGGTAAGCAT+AGG | - | 8714:1449-1468 | None:intergenic | 40.0% | |
| AGAAGAGATTCTGGATGTTG+AGG | - | 8714:1407-1426 | None:intergenic | 40.0% | |
| AGAGGTAATTGAACCCTTCT+TGG | - | 8714:3846-3865 | None:intergenic | 40.0% | |
| ATCCAATCTTTCCTCCTCTT+TGG | - | 8714:3078-3097 | None:intergenic | 40.0% | |
| ATCTTTCCTCCTCTTTGGTA+TGG | - | 8714:3073-3092 | None:intergenic | 40.0% | |
| CCAACATTGTCTACTGATCT+TGG | + | 8714:3794-3813 | MS.gene029510:CDS | 40.0% | |
| CCAAGATCAGTAGACAATGT+TGG | - | 8714:3797-3816 | None:intergenic | 40.0% | |
| CGGTTAAGAAGGTAAGCATA+GGG | - | 8714:1448-1467 | None:intergenic | 40.0% | |
| CGTATTACAACCACCAAGAA+GGG | + | 8714:3830-3849 | MS.gene029510:CDS | 40.0% | |
| GGAAAGATTGGATTGTTTGG+TGG | + | 8714:3085-3104 | MS.gene029510:CDS | 40.0% | |
| GGAGAACCTATCGATCATAA+AGG | + | 8714:2731-2750 | MS.gene029510:CDS | 40.0% | |
| GGAGGAAAGATTGGATTGTT+TGG | + | 8714:3082-3101 | MS.gene029510:CDS | 40.0% | |
| GTAGGAGCTTCTCTATGAAT+AGG | - | 8714:2889-2908 | None:intergenic | 40.0% | |
| TAATCCAGTAAGACCAACAC+GGG | - | 8714:3520-3539 | None:intergenic | 40.0% | |
| TACAACAGTGTTGTCAAGAC+AGG | + | 8714:3940-3959 | MS.gene029510:CDS | 40.0% | |
| TACCAAAGAGGAGGAAAGAT+TGG | + | 8714:3073-3092 | MS.gene029510:CDS | 40.0% | |
| TATACAAGTCGTTACCCTCT+CGG | - | 8714:3316-3335 | None:intergenic | 40.0% | |
| TCAAGTCGACATATTTGCCA+GGG | - | 8714:4342-4361 | None:intergenic | 40.0% | |
| TCATTCTACCAGATTGGTGT+TGG | + | 8714:1681-1700 | MS.gene029510:CDS | 40.0% | |
| TCTCGATCATTCTACCAGAT+TGG | + | 8714:1675-1694 | MS.gene029510:CDS | 40.0% | |
| TGAACATAGATCTCTGAGCT+TGG | + | 8714:4064-4083 | MS.gene029510:intron | 40.0% | |
| TGCTCATCACCCAAAATAAG+TGG | - | 8714:4139-4158 | None:intergenic | 40.0% | |
| TTCAAGTCGACATATTTGCC+AGG | - | 8714:4343-4362 | None:intergenic | 40.0% | |
| TTGGAGGTTGCACAACATAT+GGG | + | 8714:1700-1719 | MS.gene029510:CDS | 40.0% | |
| ! | AATTTTACGAGCACGTGCAA+CGG | - | 8714:4269-4288 | None:intergenic | 40.0% |
| ! | AGGGATGATTTGGATAGAGA+TGG | - | 8714:1379-1398 | None:intergenic | 40.0% |
| ! | AGTTGGCCTACAATTACATC+AGG | - | 8714:3724-3743 | None:intergenic | 40.0% |
| ! | CAAGCATTTTACATGGTTGG+TGG | + | 8714:4919-4938 | MS.gene029510:CDS | 40.0% |
| ! | TTTACTGGTAAAGGTGCGAT+TGG | + | 8714:1571-1590 | MS.gene029510:CDS | 40.0% |
| AACAATGTCGCAAAGGCTCA+TGG | + | 8714:3148-3167 | MS.gene029510:CDS | 45.0% | |
| AAGACTTCTGCCACATGGAA+GGG | - | 8714:4310-4329 | None:intergenic | 45.0% | |
| ACTCGGTAACACGGTTAAGA+AGG | - | 8714:1459-1478 | None:intergenic | 45.0% | |
| AGAGATTCTGGATGTTGAGG+TGG | - | 8714:1404-1423 | None:intergenic | 45.0% | |
| ATACAAGTCGTTACCCTCTC+GGG | - | 8714:3315-3334 | None:intergenic | 45.0% | |
| ATTTACACTGATAGGGGAGC+CGG | - | 8714:1797-1816 | None:intergenic | 45.0% | |
| ATTTGGATAGAGATGGACGG+AGG | - | 8714:1372-1391 | None:intergenic | 45.0% | |
| CAAGTCGACATATTTGCCAG+GGG | - | 8714:4341-4360 | None:intergenic | 45.0% | |
| CAGCAGGAACATAGATAGCT+TGG | - | 8714:3871-3890 | None:intergenic | 45.0% | |
| CATCTTGTCCTTCAGCATCA+CGG | - | 8714:3560-3579 | None:intergenic | 45.0% | |
| CTATCCTGCTGTTGATCCAT+TGG | + | 8714:4090-4109 | MS.gene029510:CDS | 45.0% | |
| CTGTAGCATACTCGGTAACA+CGG | - | 8714:1468-1487 | None:intergenic | 45.0% | |
| GAACATTTCCGTGATGCTGA+AGG | + | 8714:3549-3568 | MS.gene029510:CDS | 45.0% | |
| GAATCCAATGGATCAACAGC+AGG | - | 8714:4097-4116 | None:intergenic | 45.0% | |
| GAGAGTGGAGTCATTAAGCT+TGG | + | 8714:3347-3366 | MS.gene029510:CDS | 45.0% | |
| GCGTATTACAACCACCAAGA+AGG | + | 8714:3829-3848 | MS.gene029510:CDS | 45.0% | |
| GGTAATTGAACCCTTCTTGG+TGG | - | 8714:3843-3862 | None:intergenic | 45.0% | |
| GTAATTGTAGGCCAACTCAG+AGG | + | 8714:3727-3746 | MS.gene029510:intron | 45.0% | |
| GTGGATGTGAGATTCGAAGA+AGG | + | 8714:1622-1641 | MS.gene029510:CDS | 45.0% | |
| GTTGCACAACATATGGGTGA+AGG | + | 8714:1706-1725 | MS.gene029510:CDS | 45.0% | |
| GTTGGAGGTTGCACAACATA+TGG | + | 8714:1699-1718 | MS.gene029510:CDS | 45.0% | |
| TGAACTAATGCAGGGTGTGT+TGG | + | 8714:4870-4889 | MS.gene029510:intron | 45.0% | |
| TGTAGCATCCAAGTGAGCAA+AGG | - | 8714:3924-3943 | None:intergenic | 45.0% | |
| TTTGGATAGAGATGGACGGA+GGG | - | 8714:1371-1390 | None:intergenic | 45.0% | |
| ! | AATTCCATTCAGGTTCCCGT+TGG | + | 8714:2674-2693 | MS.gene029510:intron | 45.0% |
| ! | CATTAAGCTTGGTGATCAGC+AGG | + | 8714:3358-3377 | MS.gene029510:CDS | 45.0% |
| ! | CATTGCCTGCCAGATTTGTT+TGG | + | 8714:4522-4541 | MS.gene029510:intron | 45.0% |
| ! | GTGAAGTGTCTGTGCTACAT+TGG | + | 8714:2461-2480 | MS.gene029510:intron | 45.0% |
| !! | ATTGGATTGTTTGGTGGTGC+TGG | + | 8714:3091-3110 | MS.gene029510:CDS | 45.0% |
| !! | GGTTGATAACCAACAGCAGA+TGG | - | 8714:3776-3795 | None:intergenic | 45.0% |
| !! | TACTTGTTGTACACCTCGAG+CGG | - | 8714:4170-4189 | None:intergenic | 45.0% |
| !! | TTCTACCAGATTGGTGTTGG+AGG | + | 8714:1684-1703 | MS.gene029510:CDS | 45.0% |
| !!! | GGTGGTTTCTCTGTTTTTGC+CGG | + | 8714:3275-3294 | MS.gene029510:intron | 45.0% |
| !!! | TTCTCTGTTTTTGCCGGTGT+TGG | + | 8714:3281-3300 | MS.gene029510:CDS | 45.0% |
| AAGAAAGTTCCTGACGGTGG+TGG | + | 8714:1532-1551 | MS.gene029510:CDS | 50.0% | |
| AAGTGAGCAAAGGTGGTAGC+TGG | - | 8714:3914-3933 | None:intergenic | 50.0% | |
| ACCTCGAGCGCAGTAAGAAT+CGG | - | 8714:1655-1674 | None:intergenic | 50.0% | |
| AGATGGAATGCGACCAAGCA+AGG | - | 8714:3759-3778 | None:intergenic | 50.0% | |
| AGCATCCAAGTGAGCAAAGG+TGG | - | 8714:3921-3940 | None:intergenic | 50.0% | |
| AGCTACCACCTTTGCTCACT+TGG | + | 8714:3913-3932 | MS.gene029510:CDS | 50.0% | |
| ATTGCTATGGATGCCACGGA+AGG | + | 8714:1742-1761 | MS.gene029510:CDS | 50.0% | |
| CAGTGAAGACTTCTGCCACA+TGG | - | 8714:4315-4334 | None:intergenic | 50.0% | |
| CATGTGGCAGAAGTCTTCAC+TGG | + | 8714:4313-4332 | MS.gene029510:CDS | 50.0% | |
| CCACGGAAGGAGTTGTTAGA+GGG | + | 8714:1755-1774 | MS.gene029510:CDS | 50.0% | |
| CCGGCTAAGAAAGTTCCTGA+CGG | + | 8714:1526-1545 | MS.gene029510:CDS | 50.0% | |
| CCGTCAGGAACTTTCTTAGC+CGG | - | 8714:1529-1548 | None:intergenic | 50.0% | |
| CTAATGCAGGGTGTGTTGGA+TGG | + | 8714:4874-4893 | MS.gene029510:intron | 50.0% | |
| CTCCTCTTTGGTATGGTGCA+AGG | - | 8714:3066-3085 | None:intergenic | 50.0% | |
| CTCCTTGCACCATACCAAAG+AGG | + | 8714:3061-3080 | MS.gene029510:CDS | 50.0% | |
| CTTAAGTCAGCCCTTCCATG+TGG | + | 8714:4297-4316 | MS.gene029510:CDS | 50.0% | |
| CTTGCACCATACCAAAGAGG+AGG | + | 8714:3064-3083 | MS.gene029510:CDS | 50.0% | |
| GAAGACTTCTGCCACATGGA+AGG | - | 8714:4311-4330 | None:intergenic | 50.0% | |
| GCTAAGAAAGTTCCTGACGG+TGG | + | 8714:1529-1548 | MS.gene029510:CDS | 50.0% | |
| GGACAGGTTTGTCAGGTGAT+TGG | + | 8714:1592-1611 | MS.gene029510:CDS | 50.0% | |
| GGATCTGTCAAGTCATCAGC+AGG | - | 8714:3887-3906 | None:intergenic | 50.0% | |
| GTAATCTTTCCACCACCGTC+AGG | - | 8714:1544-1563 | None:intergenic | 50.0% | |
| TCAGGAACTTTCTTAGCCGG+AGG | - | 8714:1526-1545 | None:intergenic | 50.0% | |
| TCTGGATGTTGAGGTGGTGA+GGG | - | 8714:1398-1417 | None:intergenic | 50.0% | |
| TGAGGTGGTGAGGGATGATT+TGG | - | 8714:1389-1408 | None:intergenic | 50.0% | |
| TGCAACCTCCAACACCAATC+TGG | - | 8714:1692-1711 | None:intergenic | 50.0% | |
| TGCGATTGGACAGGTTTGTC+AGG | + | 8714:1585-1604 | MS.gene029510:CDS | 50.0% | |
| TTCTGGATGTTGAGGTGGTG+AGG | - | 8714:1399-1418 | None:intergenic | 50.0% | |
| ! | TCCAAGAGTACACCTGCCAA+CGG | - | 8714:2693-2712 | None:intergenic | 50.0% |
| ! | TGGTAAAGGTGCGATTGGAC+AGG | + | 8714:1576-1595 | MS.gene029510:CDS | 50.0% |
| !! | TTGTCAGGTGATTGGTGCTG+TGG | + | 8714:1600-1619 | MS.gene029510:CDS | 50.0% |
| !! | TTGTTTGGTGGTGCTGGTGT+AGG | + | 8714:3097-3116 | MS.gene029510:CDS | 50.0% |
| CAAGGCAGACACCTCTGAGT+TGG | - | 8714:3741-3760 | None:intergenic | 55.0% | |
| CCCTCTAACAACTCCTTCCG+TGG | - | 8714:1758-1777 | None:intergenic | 55.0% | |
| CGGAAGGAGTTGTTAGAGGG+TGG | + | 8714:1758-1777 | MS.gene029510:CDS | 55.0% | |
| GCCACGGAAGGAGTTGTTAG+AGG | + | 8714:1754-1773 | MS.gene029510:CDS | 55.0% | |
| GGTCGCATTCCATCTGCTGT+TGG | + | 8714:3764-3783 | MS.gene029510:CDS | 55.0% | |
| GTTGGAGAACGAACCCGAGA+GGG | + | 8714:3299-3318 | MS.gene029510:CDS | 55.0% | |
| TACCGAGTATGCTACAGCCG+CGG | + | 8714:1471-1490 | MS.gene029510:CDS | 55.0% | |
| TCCGATTCTTACTGCGCTCG+AGG | + | 8714:1651-1670 | MS.gene029510:CDS | 55.0% | |
| TCGAGCGCAGTAAGAATCGG+AGG | - | 8714:1652-1671 | None:intergenic | 55.0% | |
| TCGGGTTCGTTCTCCAACAC+CGG | - | 8714:3297-3316 | None:intergenic | 55.0% | |
| TGTTGGAGAACGAACCCGAG+AGG | + | 8714:3298-3317 | MS.gene029510:CDS | 55.0% | |
| TTCTTAGCCGGAGGAGTCTG+AGG | - | 8714:1517-1536 | None:intergenic | 55.0% | |
| ! | CCAAGAGTACACCTGCCAAC+GGG | - | 8714:2692-2711 | None:intergenic | 55.0% |
| !! | TCAGAGGTGTCTGCCTTGCT+TGG | + | 8714:3743-3762 | MS.gene029510:CDS | 55.0% |
| !! | TCAGGTGATTGGTGCTGTGG+TGG | + | 8714:1603-1622 | MS.gene029510:CDS | 55.0% |
| AGCCGCGGCTGTAGCATACT+CGG | - | 8714:1476-1495 | None:intergenic | 60.0% | |
| CCCGTTGGCAGGTGTACTCT+TGG | + | 8714:2689-2708 | MS.gene029510:CDS | 60.0% | |
| CCTGCCAACGGGAACCTGAA+TGG | - | 8714:2681-2700 | None:intergenic | 60.0% | |
| GAAGTCTTCACTGGTGCCCC+TGG | + | 8714:4322-4341 | MS.gene029510:CDS | 60.0% | |
| GAGCACTACGAAACCGCTCG+AGG | + | 8714:4154-4173 | MS.gene029510:CDS | 60.0% | |
| GCAAAGGTGGTAGCTGGAGC+AGG | - | 8714:3908-3927 | None:intergenic | 60.0% | |
| GGATAGAGATGGACGGAGGG+AGG | - | 8714:1368-1387 | None:intergenic | 60.0% | |
| GGGTGGCGTGTTCTCAACAC+CGG | + | 8714:1775-1794 | MS.gene029510:CDS | 60.0% | |
| GGTCAAATGAACGAGCCCCC+TGG | + | 8714:3486-3505 | MS.gene029510:CDS | 60.0% | |
| TTAGCCGGAGGAGTCTGAGG+AGG | - | 8714:1514-1533 | None:intergenic | 60.0% | |
| ! | CCATTCAGGTTCCCGTTGGC+AGG | + | 8714:2678-2697 | MS.gene029510:intron | 60.0% |
| !! | CGTGCCCGTGTTGGTCTTAC+TGG | + | 8714:3513-3532 | MS.gene029510:CDS | 60.0% |
| AACACGGGCACGAGCACCAG+GGG | - | 8714:3505-3524 | None:intergenic | 65.0% | |
| CAACACGGGCACGAGCACCA+GGG | - | 8714:3506-3525 | None:intergenic | 65.0% | |
| CGCTCCTCCTCAGACTCCTC+CGG | + | 8714:1507-1526 | MS.gene029510:CDS | 65.0% | |
| CGGAGGAGTCTGAGGAGGAG+CGG | - | 8714:1509-1528 | None:intergenic | 65.0% | |
| GGAGGAGTCTGAGGAGGAGC+GGG | - | 8714:1508-1527 | None:intergenic | 65.0% | |
| ACACGGGCACGAGCACCAGG+GGG | - | 8714:3504-3523 | None:intergenic | 70.0% | |
| CCAACACGGGCACGAGCACC+AGG | - | 8714:3507-3526 | None:intergenic | 70.0% | |
| CCTGGTGCTCGTGCCCGTGT+TGG | + | 8714:3504-3523 | MS.gene029510:CDS | 70.0% | |
| AGCGGGAGCTGCAGCAGCCG+CGG | - | 8714:1491-1510 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 8714 | gene | 1328 | 4996 | 1328 | ID=MS.gene029510 |
| 8714 | mRNA | 1328 | 4996 | 1328 | ID=MS.gene029510.t1;Parent=MS.gene029510 |
| 8714 | exon | 1328 | 1810 | 1328 | ID=MS.gene029510.t1.exon1;Parent=MS.gene029510.t1 |
| 8714 | CDS | 1328 | 1810 | 1328 | ID=cds.MS.gene029510.t1;Parent=MS.gene029510.t1 |
| 8714 | exon | 2686 | 2761 | 2686 | ID=MS.gene029510.t1.exon2;Parent=MS.gene029510.t1 |
| 8714 | CDS | 2686 | 2761 | 2686 | ID=cds.MS.gene029510.t1;Parent=MS.gene029510.t1 |
| 8714 | exon | 2869 | 2957 | 2869 | ID=MS.gene029510.t1.exon3;Parent=MS.gene029510.t1 |
| 8714 | CDS | 2869 | 2957 | 2869 | ID=cds.MS.gene029510.t1;Parent=MS.gene029510.t1 |
| 8714 | exon | 3052 | 3169 | 3052 | ID=MS.gene029510.t1.exon4;Parent=MS.gene029510.t1 |
| 8714 | CDS | 3052 | 3169 | 3052 | ID=cds.MS.gene029510.t1;Parent=MS.gene029510.t1 |
| 8714 | exon | 3276 | 3379 | 3276 | ID=MS.gene029510.t1.exon5;Parent=MS.gene029510.t1 |
| 8714 | CDS | 3276 | 3379 | 3276 | ID=cds.MS.gene029510.t1;Parent=MS.gene029510.t1 |
| 8714 | exon | 3459 | 3617 | 3459 | ID=MS.gene029510.t1.exon6;Parent=MS.gene029510.t1 |
| 8714 | CDS | 3459 | 3617 | 3459 | ID=cds.MS.gene029510.t1;Parent=MS.gene029510.t1 |
| 8714 | exon | 3737 | 3961 | 3737 | ID=MS.gene029510.t1.exon7;Parent=MS.gene029510.t1 |
| 8714 | CDS | 3737 | 3961 | 3737 | ID=cds.MS.gene029510.t1;Parent=MS.gene029510.t1 |
| 8714 | exon | 4073 | 4384 | 4073 | ID=MS.gene029510.t1.exon8;Parent=MS.gene029510.t1 |
| 8714 | CDS | 4073 | 4384 | 4073 | ID=cds.MS.gene029510.t1;Parent=MS.gene029510.t1 |
| 8714 | exon | 4883 | 4996 | 4883 | ID=MS.gene029510.t1.exon9;Parent=MS.gene029510.t1 |
| 8714 | CDS | 4883 | 4996 | 4883 | ID=cds.MS.gene029510.t1;Parent=MS.gene029510.t1 |
| Gene Sequence |
| Protein sequence |
