Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029511.t1 | XP_013470102.1 | 99.8 | 519 | 1 | 0 | 1 | 519 | 1 | 519 | 2.90E-281 | 977.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029511.t1 | Q01859 | 86.1 | 519 | 68 | 1 | 1 | 519 | 1 | 515 | 3.6e-248 | 858.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029511.t1 | A0A072W1H5 | 99.8 | 519 | 1 | 0 | 1 | 519 | 1 | 519 | 2.1e-281 | 977.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029511 | MS.gene012472 | PPI |
| MS.gene029511 | MS.gene73458 | PPI |
| MS.gene029511 | MS.gene75019 | PPI |
| MS.gene029511 | MS.gene49154 | PPI |
| MS.gene029511 | MS.gene029510 | PPI |
| MS.gene029511 | MS.gene029509 | PPI |
| MS.gene029511 | MS.gene029508 | PPI |
| MS.gene029511 | MS.gene30654 | PPI |
| MS.gene029511 | MS.gene040499 | PPI |
| MS.gene029511 | MS.gene71744 | PPI |
| MS.gene029511 | MS.gene57960 | PPI |
| MS.gene029511 | MS.gene005079 | PPI |
| MS.gene029511 | MS.gene75018 | PPI |
| MS.gene029511 | MS.gene055477 | PPI |
| MS.gene029511 | MS.gene43955 | PPI |
| MS.gene029511 | MS.gene036419 | PPI |
| MS.gene035640 | MS.gene029511 | PPI |
| MS.gene029511 | MS.gene60613 | PPI |
| MS.gene029511 | MS.gene62607 | PPI |
| MS.gene029511 | MS.gene061126 | PPI |
| MS.gene029511 | MS.gene006231 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029511.t1 | MTR_1g108765 | 99.807 | 519 | 1 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1052 |
| MS.gene029511.t1 | MTR_1g108770 | 91.379 | 522 | 42 | 3 | 1 | 519 | 1 | 522 | 0.0 | 927 |
| MS.gene029511.t1 | MTR_0002s0650 | 70.429 | 443 | 122 | 4 | 84 | 519 | 19 | 459 | 0.0 | 600 |
| MS.gene029511.t1 | MTR_7g021780 | 70.112 | 445 | 124 | 4 | 82 | 519 | 17 | 459 | 0.0 | 597 |
| MS.gene029511.t1 | MTR_4g451275 | 70.045 | 444 | 126 | 3 | 82 | 519 | 17 | 459 | 0.0 | 596 |
| MS.gene029511.t1 | MTR_3g035730 | 69.663 | 445 | 126 | 4 | 82 | 519 | 17 | 459 | 0.0 | 589 |
| MS.gene029511.t1 | MTR_7g033765 | 69.213 | 445 | 128 | 4 | 82 | 519 | 17 | 459 | 0.0 | 586 |
| MS.gene029511.t1 | MTR_7g033755 | 61.137 | 422 | 94 | 5 | 104 | 519 | 1 | 358 | 1.74e-165 | 478 |
| MS.gene029511.t1 | MTR_2g066870 | 61.264 | 364 | 127 | 5 | 159 | 519 | 29 | 381 | 1.28e-148 | 432 |
| MS.gene029511.t1 | MTR_7g117920 | 65.724 | 283 | 88 | 4 | 82 | 357 | 17 | 297 | 6.59e-111 | 332 |
| MS.gene029511.t1 | MTR_1829s0010 | 77.451 | 204 | 46 | 0 | 316 | 519 | 1 | 204 | 9.94e-111 | 332 |
| MS.gene029511.t1 | MTR_6g055020 | 64.286 | 266 | 86 | 4 | 82 | 340 | 17 | 280 | 1.51e-99 | 301 |
| MS.gene029511.t1 | MTR_2g066860 | 60.870 | 161 | 50 | 4 | 1 | 159 | 2 | 151 | 3.55e-51 | 173 |
| MS.gene029511.t1 | MTR_1g076100 | 68.750 | 80 | 25 | 0 | 373 | 452 | 5 | 84 | 1.48e-31 | 117 |
| MS.gene029511.t1 | MTR_4g010980 | 47.761 | 134 | 64 | 2 | 83 | 210 | 15 | 148 | 4.78e-30 | 115 |
| MS.gene029511.t1 | MTR_1g112870 | 28.715 | 397 | 247 | 11 | 121 | 493 | 60 | 444 | 5.88e-28 | 117 |
| MS.gene029511.t1 | MTR_7g081010 | 28.788 | 396 | 247 | 12 | 121 | 493 | 59 | 442 | 6.47e-28 | 117 |
| MS.gene029511.t1 | MTR_4g005410 | 28.012 | 332 | 213 | 9 | 180 | 493 | 203 | 526 | 1.77e-25 | 110 |
| MS.gene029511.t1 | MTR_5g090750 | 76.786 | 56 | 13 | 0 | 456 | 511 | 21 | 76 | 1.38e-22 | 92.0 |
| MS.gene029511.t1 | MTR_0212s0040 | 25.556 | 360 | 239 | 7 | 92 | 434 | 30 | 377 | 7.12e-20 | 94.0 |
| MS.gene029511.t1 | MTR_7g498250 | 86.957 | 69 | 8 | 1 | 1 | 69 | 1 | 68 | 2.46e-18 | 81.6 |
| MS.gene029511.t1 | MTR_0002s0550 | 24.866 | 374 | 252 | 10 | 147 | 506 | 86 | 444 | 4.34e-18 | 87.4 |
| MS.gene029511.t1 | MTR_7g498250 | 86.957 | 69 | 8 | 1 | 1 | 69 | 1 | 68 | 6.52e-18 | 79.3 |
| MS.gene029511.t1 | MTR_3g065340 | 40.146 | 137 | 50 | 7 | 2 | 138 | 3 | 107 | 6.36e-16 | 75.5 |
| MS.gene029511.t1 | MTR_3g099550 | 77.778 | 45 | 10 | 0 | 98 | 142 | 10 | 54 | 2.22e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029511.t1 | AT5G08680 | 86.008 | 486 | 61 | 3 | 37 | 519 | 41 | 522 | 0.0 | 847 |
| MS.gene029511.t1 | AT5G08690 | 84.444 | 495 | 69 | 3 | 30 | 519 | 28 | 519 | 0.0 | 832 |
| MS.gene029511.t1 | AT5G08670 | 85.361 | 485 | 66 | 2 | 37 | 519 | 38 | 519 | 0.0 | 831 |
| MS.gene029511.t1 | ATCG00480 | 70.045 | 444 | 126 | 3 | 82 | 519 | 17 | 459 | 0.0 | 597 |
| MS.gene029511.t1 | AT1G20260 | 28.463 | 397 | 248 | 11 | 121 | 493 | 58 | 442 | 1.79e-28 | 119 |
| MS.gene029511.t1 | AT1G76030 | 28.788 | 396 | 247 | 11 | 121 | 493 | 58 | 441 | 4.87e-28 | 117 |
| MS.gene029511.t1 | AT4G38510 | 28.283 | 396 | 249 | 11 | 121 | 493 | 59 | 442 | 6.40e-28 | 117 |
| MS.gene029511.t1 | AT4G38510 | 28.283 | 396 | 249 | 11 | 121 | 493 | 59 | 442 | 6.40e-28 | 117 |
| MS.gene029511.t1 | AT4G38510 | 28.283 | 396 | 249 | 11 | 121 | 493 | 59 | 442 | 6.40e-28 | 117 |
| MS.gene029511.t1 | AT4G38510 | 28.283 | 396 | 249 | 11 | 121 | 493 | 59 | 442 | 6.40e-28 | 117 |
| MS.gene029511.t1 | AT4G38510 | 28.283 | 396 | 249 | 11 | 121 | 493 | 66 | 449 | 7.08e-28 | 117 |
| MS.gene029511.t1 | AT1G78900 | 29.276 | 304 | 190 | 8 | 208 | 493 | 229 | 525 | 2.54e-25 | 110 |
| MS.gene029511.t1 | AT1G78900 | 29.276 | 304 | 190 | 8 | 208 | 493 | 229 | 525 | 2.54e-25 | 110 |
| MS.gene029511.t1 | ATMG01190 | 26.073 | 303 | 203 | 4 | 144 | 434 | 84 | 377 | 2.52e-20 | 94.4 |
| MS.gene029511.t1 | AT2G07698 | 26.263 | 297 | 198 | 4 | 150 | 434 | 360 | 647 | 7.46e-20 | 94.0 |
| MS.gene029511.t1 | ATCG00120 | 24.648 | 426 | 269 | 13 | 98 | 506 | 54 | 444 | 9.28e-17 | 83.6 |
Find 0 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATTAAAATAGTTCAATT+TGG | + | 8714:8580-8599 | MS.gene029511:intron | 15.0% |
| !! | ATAAAAAGATTTAAGGAAAT+GGG | - | 8714:7012-7031 | None:intergenic | 15.0% |
| !! | ATAAATAGACAATGATAAAA+AGG | - | 8714:8751-8770 | None:intergenic | 15.0% |
| !! | GAAAAGTTATAGAAATTAAA+CGG | - | 8714:6650-6669 | None:intergenic | 15.0% |
| !!! | ATTTCCTTAAATCTTTTTAT+GGG | + | 8714:7012-7031 | MS.gene029511:intron | 15.0% |
| !!! | TTTAGGTAAACTATTTTTTT+GGG | + | 8714:8634-8653 | MS.gene029511:intron | 15.0% |
| !!! | TTTTAATTTTAGAACTAGTT+CGG | + | 8714:8530-8549 | MS.gene029511:intron | 15.0% |
| !!! | TTTTTATTGTTTTTTGATTG+TGG | + | 8714:6276-6295 | MS.gene029511:intron | 15.0% |
| !! | AAAATTACTGATGAATTTAC+TGG | + | 8714:5810-5829 | MS.gene029511:CDS | 20.0% |
| !! | ACAACCTATGAAAAAAAATA+AGG | - | 8714:7068-7087 | None:intergenic | 20.0% |
| !! | ATGAACAATATTATTGAATG+TGG | - | 8714:7424-7443 | None:intergenic | 20.0% |
| !! | ATGGAATAAAAAAAGGATAA+AGG | - | 8714:8104-8123 | None:intergenic | 20.0% |
| !! | ATTACCTGAAATTAAGTTAA+GGG | - | 8714:8073-8092 | None:intergenic | 20.0% |
| !! | CATAAAAAGATTTAAGGAAA+TGG | - | 8714:7013-7032 | None:intergenic | 20.0% |
| !! | GAAAAAAAATAAGGCAAAAT+TGG | - | 8714:7059-7078 | None:intergenic | 20.0% |
| !! | GACAAAAATGGAATAAAAAA+AGG | - | 8714:8111-8130 | None:intergenic | 20.0% |
| !! | TACATAAAAACCAAACATTA+CGG | - | 8714:8698-8717 | None:intergenic | 20.0% |
| !! | TAGACTGAAAATAAATTTAG+AGG | - | 8714:6805-6824 | None:intergenic | 20.0% |
| !!! | AAAAAATGTAATTCCACTTT+TGG | + | 8714:8353-8372 | MS.gene029511:intron | 20.0% |
| !!! | AAAGTGGAATTACATTTTTT+AGG | - | 8714:8353-8372 | None:intergenic | 20.0% |
| !!! | AGAACTAAATGATCTTATTT+CGG | + | 8714:9102-9121 | MS.gene029511:intron | 20.0% |
| !!! | ATCTGATTTTGAGATAATTT+TGG | + | 8714:6148-6167 | MS.gene029511:intron | 20.0% |
| !!! | CATTTCCTTAAATCTTTTTA+TGG | + | 8714:7011-7030 | MS.gene029511:intron | 20.0% |
| !!! | GAATTTTTTTTTGACTTTAC+TGG | + | 8714:6106-6125 | MS.gene029511:intron | 20.0% |
| !!! | GTTTAGGTAAACTATTTTTT+TGG | + | 8714:8633-8652 | MS.gene029511:intron | 20.0% |
| !!! | TAAGTTTTGATTTTTTGAGA+AGG | + | 8714:6240-6259 | MS.gene029511:intron | 20.0% |
| !!! | TAATGTTTGGTTTTTATGTA+TGG | + | 8714:8698-8717 | MS.gene029511:intron | 20.0% |
| !!! | TATGTATGGTTTTTTATAGA+TGG | + | 8714:8712-8731 | MS.gene029511:intron | 20.0% |
| !!! | TATTTTTGGAGCTTAATTTA+AGG | - | 8714:7964-7983 | None:intergenic | 20.0% |
| !!! | TTAAGAATCGTTGAATTTTA+CGG | - | 8714:9350-9369 | None:intergenic | 20.0% |
| !!! | TTTGCCTTATTTTTTTTCAT+AGG | + | 8714:7061-7080 | MS.gene029511:intron | 20.0% |
| ! | AATCCAAAAGAAAGTCAAAT+TGG | - | 8714:6562-6581 | None:intergenic | 25.0% |
| ! | ACTGCAATGAAAAAAGATAA+AGG | + | 8714:8279-8298 | MS.gene029511:intron | 25.0% |
| ! | ACTGTGTATAGCTATTATTA+TGG | - | 8714:8504-8523 | None:intergenic | 25.0% |
| ! | AGGAAAAACAGTTCTTATTA+TGG | + | 8714:7148-7167 | MS.gene029511:CDS | 25.0% |
| ! | CATTACCTGAAATTAAGTTA+AGG | - | 8714:8074-8093 | None:intergenic | 25.0% |
| ! | CGTGATTACAGTAAATTAAA+CGG | - | 8714:6376-6395 | None:intergenic | 25.0% |
| ! | CTTTCAATCTTCAAATATGT+GGG | + | 8714:8190-8209 | MS.gene029511:intron | 25.0% |
| ! | GAATAGATATTTACACTGAT+GGG | - | 8714:6059-6078 | None:intergenic | 25.0% |
| ! | TATTGCCTGAAATTAAGTTA+AGG | + | 8714:8309-8328 | MS.gene029511:intron | 25.0% |
| ! | TGAATAGATATTTACACTGA+TGG | - | 8714:6060-6079 | None:intergenic | 25.0% |
| ! | TGTATCAAAGTCGTTAATTA+TGG | + | 8714:7454-7473 | MS.gene029511:intron | 25.0% |
| ! | TGTGAAAAAAATACCAAAAG+TGG | - | 8714:8369-8388 | None:intergenic | 25.0% |
| ! | TTAGTCCTTAACTTAATTTC+AGG | - | 8714:8317-8336 | None:intergenic | 25.0% |
| ! | TTGCAATTAAAAGTAAAAGC+AGG | + | 8714:6442-6461 | MS.gene029511:intron | 25.0% |
| ! | TTTGCCCATAAAAAGATTTA+AGG | - | 8714:7019-7038 | None:intergenic | 25.0% |
| !! | AACATACTTAAAACGCTTTT+TGG | - | 8714:6672-6691 | None:intergenic | 25.0% |
| !! | AATTTTTATGTTGCGTTTCA+TGG | + | 8714:6175-6194 | MS.gene029511:intron | 25.0% |
| !! | AGTTTGCATTAGTAAGTTTT+GGG | - | 8714:7678-7697 | None:intergenic | 25.0% |
| !! | TAAGAATCGTTGAATTTTAC+GGG | - | 8714:9349-9368 | None:intergenic | 25.0% |
| !! | TTTTTCACAATAAGTGATGA+TGG | + | 8714:8467-8486 | MS.gene029511:intron | 25.0% |
| !!! | ACGCTGTACATATTTTAAAT+GGG | + | 8714:6413-6432 | MS.gene029511:intron | 25.0% |
| !!! | CTTAATTTCAGGTAATGTTT+TGG | + | 8714:8077-8096 | MS.gene029511:intron | 25.0% |
| !!! | GTAAACTATTTTTTTGGGTT+TGG | + | 8714:8639-8658 | MS.gene029511:intron | 25.0% |
| !!! | TACGCTGTACATATTTTAAA+TGG | + | 8714:6412-6431 | MS.gene029511:intron | 25.0% |
| !!! | TTATTCCATTTTTGTCCTAT+TGG | + | 8714:8115-8134 | MS.gene029511:intron | 25.0% |
| ACTGATGAATTTACTGGAAA+AGG | + | 8714:5816-5835 | MS.gene029511:CDS | 30.0% | |
| ACTTATCAACAATGTTGCTA+AGG | + | 8714:7172-7191 | MS.gene029511:CDS | 30.0% | |
| ATGAACCAATAGGACAAAAA+TGG | - | 8714:8123-8142 | None:intergenic | 30.0% | |
| ATGAATAGGCAAATAATGCT+CGG | - | 8714:6906-6925 | None:intergenic | 30.0% | |
| CAAAAGTAAAAACCAATAGC+AGG | - | 8714:6608-6627 | None:intergenic | 30.0% | |
| CATTGTTGTGTATTGCATTT+AGG | + | 8714:6696-6715 | MS.gene029511:intron | 30.0% | |
| CCACATATTTGAAGATTGAA+AGG | - | 8714:8192-8211 | None:intergenic | 30.0% | |
| CCTTTCAATCTTCAAATATG+TGG | + | 8714:8189-8208 | MS.gene029511:intron | 30.0% | |
| CTTAATTTCAGGCAATAGTT+AGG | - | 8714:8306-8325 | None:intergenic | 30.0% | |
| CTTGAAAATCCATATGCAAA+AGG | + | 8714:8252-8271 | MS.gene029511:intron | 30.0% | |
| TAGTCCCTTAACTTAATTTC+AGG | + | 8714:8066-8085 | MS.gene029511:intron | 30.0% | |
| TCATCAGTTGAAAATCACTA+TGG | - | 8714:6858-6877 | None:intergenic | 30.0% | |
| TGAAAATAGATTTCTGAGCT+TGG | + | 8714:9132-9151 | MS.gene029511:intron | 30.0% | |
| TTACCTTAATACCAGTAACA+AGG | - | 8714:6973-6992 | None:intergenic | 30.0% | |
| TTTATTAGCTCGATAGAATC+AGG | + | 8714:8442-8461 | MS.gene029511:intron | 30.0% | |
| ! | CAAGATATCATTGCTATTCT+GGG | + | 8714:9279-9298 | MS.gene029511:CDS | 30.0% |
| ! | CAGTTTGCATTAGTAAGTTT+TGG | - | 8714:7679-7698 | None:intergenic | 30.0% |
| ! | GATAAATGGGGTCTTTTTAA+TGG | + | 8714:6325-6344 | MS.gene029511:intron | 30.0% |
| ! | GCTAATAAATTGCGTGTTTT+AGG | - | 8714:8431-8450 | None:intergenic | 30.0% |
| ! | TATGCTTTCTCCACTTATTT+TGG | + | 8714:9194-9213 | MS.gene029511:CDS | 30.0% |
| ! | TCAAGATATCATTGCTATTC+TGG | + | 8714:9278-9297 | MS.gene029511:CDS | 30.0% |
| ! | TGGGTGCATGATTTAAATTT+TGG | - | 8714:7659-7678 | None:intergenic | 30.0% |
| ! | TGTTCTTTGTGTTTGGTAAT+TGG | + | 8714:7809-7828 | MS.gene029511:intron | 30.0% |
| !! | ATGCTTTCTCCACTTATTTT+GGG | + | 8714:9195-9214 | MS.gene029511:CDS | 30.0% |
| !! | ATTTTCAAGCTTGAAATCCA+CGG | + | 8714:8153-8172 | MS.gene029511:intron | 30.0% |
| !! | TTTAGGAAAATTTGGTGTCA+CGG | - | 8714:8414-8433 | None:intergenic | 30.0% |
| !!! | AATTTTAGAACTAGTTCGGT+AGG | + | 8714:8534-8553 | MS.gene029511:intron | 30.0% |
| !!! | ATTTTAGAACTAGTTCGGTA+GGG | + | 8714:8535-8554 | MS.gene029511:intron | 30.0% |
| !!! | TATTTTAATGTTCAGTCCAG+TGG | - | 8714:8572-8591 | None:intergenic | 30.0% |
| !!! | TTGCGTGTTTTAGGAAAATT+TGG | - | 8714:8422-8441 | None:intergenic | 30.0% |
| AACATTCATGATACGTCCAA+GGG | - | 8714:6740-6759 | None:intergenic | 35.0% | |
| AATTCGCCTTTATGATCGAT+AGG | - | 8714:6772-6791 | None:intergenic | 35.0% | |
| ATAAATTGCCCAAACCAAAC+AGG | - | 8714:6353-6372 | None:intergenic | 35.0% | |
| ATACGAGATGTTGAATCCAA+TGG | - | 8714:9177-9196 | None:intergenic | 35.0% | |
| ATGATGCCTGATGTAATTGT+AGG | + | 8714:8783-8802 | MS.gene029511:intron | 35.0% | |
| ATGTCAATCCTCGATAAATG+GGG | + | 8714:6313-6332 | MS.gene029511:intron | 35.0% | |
| CAGAGAAACCACCTATTATA+TGG | - | 8714:7283-7302 | None:intergenic | 35.0% | |
| GAAAGTCAAATTGGAGCAAA+TGG | - | 8714:6553-6572 | None:intergenic | 35.0% | |
| GAACACATGTTCTTTGTGTT+TGG | + | 8714:7802-7821 | MS.gene029511:intron | 35.0% | |
| GAGTGTTTCCATATAATAGG+TGG | + | 8714:7272-7291 | MS.gene029511:intron | 35.0% | |
| GATCCTTGTTACTGGTATTA+AGG | + | 8714:6967-6986 | MS.gene029511:CDS | 35.0% | |
| GATGTCAATCCTCGATAAAT+GGG | + | 8714:6312-6331 | MS.gene029511:intron | 35.0% | |
| GCTGAGTGTTTCCATATAAT+AGG | + | 8714:7269-7288 | MS.gene029511:intron | 35.0% | |
| GGACGTATCATGAATGTTAT+TGG | + | 8714:6742-6761 | MS.gene029511:CDS | 35.0% | |
| GTGCAAAAAGCAAGTAGAAA+AGG | - | 8714:7933-7952 | None:intergenic | 35.0% | |
| TAAAAAGACCCCATTTATCG+AGG | - | 8714:6324-6343 | None:intergenic | 35.0% | |
| TAAACACAAGCAGTTCGATT+TGG | + | 8714:8611-8630 | MS.gene029511:intron | 35.0% | |
| TAACATTCATGATACGTCCA+AGG | - | 8714:6741-6760 | None:intergenic | 35.0% | |
| TACAGAGAAATGATTGAGAG+TGG | + | 8714:7347-7366 | MS.gene029511:CDS | 35.0% | |
| TCAAATGCAGATGAACCAAT+AGG | - | 8714:8133-8152 | None:intergenic | 35.0% | |
| TCAACTCAACATATTTGCCT+GGG | - | 8714:9410-9429 | None:intergenic | 35.0% | |
| TCTAGATCATTCTTCGAGAT+TGG | + | 8714:5929-5948 | MS.gene029511:CDS | 35.0% | |
| TGAATTTACTGGAAAAGGAG+CGG | + | 8714:5821-5840 | MS.gene029511:CDS | 35.0% | |
| TGATGTCAATCCTCGATAAA+TGG | + | 8714:6311-6330 | MS.gene029511:intron | 35.0% | |
| TTCAACTCAACATATTTGCC+TGG | - | 8714:9411-9430 | None:intergenic | 35.0% | |
| ! | AAATCCACGGTTTTCTTTTG+CGG | + | 8714:8166-8185 | MS.gene029511:intron | 35.0% |
| ! | AAGCGCTAAAGCATTAAGTT+AGG | - | 8714:7210-7229 | None:intergenic | 35.0% |
| ! | AGTTAGCCTACAATTACATC+AGG | - | 8714:8792-8811 | None:intergenic | 35.0% |
| ! | TATCATTGCTATTCTGGGAA+TGG | + | 8714:9284-9303 | MS.gene029511:CDS | 35.0% |
| ! | TTGATGGTTTCGATGAAGAT+CGG | - | 8714:5641-5660 | None:intergenic | 35.0% |
| !! | AGGCAAATATGTTGAGTTGA+AGG | + | 8714:9410-9429 | MS.gene029511:CDS | 35.0% |
| !! | GCTCCAATTTGACTTTCTTT+TGG | + | 8714:6556-6575 | MS.gene029511:intron | 35.0% |
| !! | TGTTCATGGTTTGGTTAGTA+TGG | - | 8714:8674-8693 | None:intergenic | 35.0% |
| AACAATGTTGCTAAGGCTCA+TGG | + | 8714:7179-7198 | MS.gene029511:CDS | 40.0% | |
| ACATTGTCTACTGATCTTGG+AGG | + | 8714:8865-8884 | MS.gene029511:CDS | 40.0% | |
| AGAGGTAATTGAACCCTTCT+TGG | - | 8714:8914-8933 | None:intergenic | 40.0% | |
| AGCAAATGTGCTCTTGTGTA+TGG | + | 8714:7496-7515 | MS.gene029511:CDS | 40.0% | |
| ATTGCTATGGATGCTACTGA+AGG | + | 8714:5996-6015 | MS.gene029511:CDS | 40.0% | |
| CAACTCAACATATTTGCCTG+GGG | - | 8714:9409-9428 | None:intergenic | 40.0% | |
| CAGTTCAATAGCACACAGTT+CGG | - | 8714:7756-7775 | None:intergenic | 40.0% | |
| CATTACGGTTGTTCATGGTT+TGG | - | 8714:8683-8702 | None:intergenic | 40.0% | |
| CCAAACATTACGGTTGTTCA+TGG | - | 8714:8688-8707 | None:intergenic | 40.0% | |
| CCAACATTGTCTACTGATCT+TGG | + | 8714:8862-8881 | MS.gene029511:CDS | 40.0% | |
| CCAAGATCAGTAGACAATGT+TGG | - | 8714:8865-8884 | None:intergenic | 40.0% | |
| CCATGAACAACCGTAATGTT+TGG | + | 8714:8685-8704 | MS.gene029511:intron | 40.0% | |
| CGTATTACAACCACCAAGAA+GGG | + | 8714:8898-8917 | MS.gene029511:CDS | 40.0% | |
| GAACAACAGATCCTTGTTAC+TGG | + | 8714:6959-6978 | MS.gene029511:CDS | 40.0% | |
| GATCAGTAGACAATGTTGGT+TGG | - | 8714:8861-8880 | None:intergenic | 40.0% | |
| GCAAGTTTCAGACACAAACA+CGG | - | 8714:7862-7881 | None:intergenic | 40.0% | |
| GGAAAGATTGGATTGTTTGG+TGG | + | 8714:7116-7135 | MS.gene029511:CDS | 40.0% | |
| GGAGAACCTATCGATCATAA+AGG | + | 8714:6763-6782 | MS.gene029511:CDS | 40.0% | |
| GGAGGAAAGATTGGATTGTT+TGG | + | 8714:7113-7132 | MS.gene029511:CDS | 40.0% | |
| GGATTTGAATCTTGCAAGCA+CGG | + | 8714:6577-6596 | MS.gene029511:intron | 40.0% | |
| GGTCAAGTTTGTCAGGTTAT+TGG | + | 8714:5846-5865 | MS.gene029511:CDS | 40.0% | |
| GTAATTGTAGGCTAACTCAG+AGG | + | 8714:8795-8814 | MS.gene029511:intron | 40.0% | |
| GTTGACGTCAGATTTGAAGA+AGG | + | 8714:5876-5895 | MS.gene029511:CDS | 40.0% | |
| TACAACAGTGTTGTCTAGAC+AGG | + | 8714:9008-9027 | MS.gene029511:CDS | 40.0% | |
| TATGTTGCGTTTCATGGATC+TGG | + | 8714:6181-6200 | MS.gene029511:intron | 40.0% | |
| TCATTCTTCGAGATTGGTGT+TGG | + | 8714:5935-5954 | MS.gene029511:CDS | 40.0% | |
| TGCTCATCACCCAAAATAAG+TGG | - | 8714:9207-9226 | None:intergenic | 40.0% | |
| TGGTGCTTACTTGAGTAAAG+CGG | - | 8714:7639-7658 | None:intergenic | 40.0% | |
| TGTACAAGTCATTACCCTCA+CGG | - | 8714:7331-7350 | None:intergenic | 40.0% | |
| TGTTGTGAGAACCATTGCTA+TGG | + | 8714:5983-6002 | MS.gene029511:CDS | 40.0% | |
| TTCAAATCTGACGTCAACGA+CGG | - | 8714:5874-5893 | None:intergenic | 40.0% | |
| TTCAGTAGCATCCATAGCAA+TGG | - | 8714:5997-6016 | None:intergenic | 40.0% | |
| ! | ACTGTGTGCTATTGAACTGT+TGG | + | 8714:7757-7776 | MS.gene029511:intron | 40.0% |
| ! | ATCAGTAATTTTCCCACCTC+CGG | - | 8714:5802-5821 | None:intergenic | 40.0% |
| ! | GCAGTTTGTCCTTTTGCATA+TGG | - | 8714:8264-8283 | None:intergenic | 40.0% |
| ! | TATTGCATTTAGGTTCCCGT+TGG | + | 8714:6706-6725 | MS.gene029511:intron | 40.0% |
| ! | TCTTTTTAATGGCGCCTGTT+TGG | + | 8714:6336-6355 | MS.gene029511:intron | 40.0% |
| !! | CAAGCAGTTCGATTTGGTTT+AGG | + | 8714:8617-8636 | MS.gene029511:intron | 40.0% |
| !! | TTTCACACAGTTTGCTGCAA+TGG | + | 8714:8382-8401 | MS.gene029511:intron | 40.0% |
| ACCTCAAGAGCAGTCAAGAT+CGG | - | 8714:5909-5928 | None:intergenic | 45.0% | |
| AGATGGAATACGACCAAGCA+GGG | - | 8714:8827-8846 | None:intergenic | 45.0% | |
| ATAAGGTGAAGCGCGAGATT+GGG | - | 8714:5691-5710 | None:intergenic | 45.0% | |
| ATCCAATCTTTCCTCCCCTT+TGG | - | 8714:7109-7128 | None:intergenic | 45.0% | |
| ATCTTTCCTCCCCTTTGGTA+TGG | - | 8714:7104-7123 | None:intergenic | 45.0% | |
| CAATAGCACACAGTTCGGTT+TGG | - | 8714:7751-7770 | None:intergenic | 45.0% | |
| CACATAGATAGCTTGGACAG+AGG | - | 8714:8932-8951 | None:intergenic | 45.0% | |
| CAGAGTAACACAGACACATG+TGG | - | 8714:6479-6498 | None:intergenic | 45.0% | |
| CATCTTGTCCTTCAGCATCA+CGG | - | 8714:7591-7610 | None:intergenic | 45.0% | |
| CATTAAGCTGGGTGAAAAGC+AGG | + | 8714:7373-7392 | MS.gene029511:CDS | 45.0% | |
| CGGTTTAAGAGGTAGCCATA+AGG | - | 8714:5708-5727 | None:intergenic | 45.0% | |
| CTATCCTGCTGTTGATCCAT+TGG | + | 8714:9158-9177 | MS.gene029511:CDS | 45.0% | |
| GAATCCAATGGATCAACAGC+AGG | - | 8714:9165-9184 | None:intergenic | 45.0% | |
| GATGTTGAGGCAGTGATTGA+TGG | - | 8714:5657-5676 | None:intergenic | 45.0% | |
| GCAGGAGCTTCTCTATGAAT+AGG | - | 8714:6920-6939 | None:intergenic | 45.0% | |
| GCGTATTACAACCACCAAGA+AGG | + | 8714:8897-8916 | MS.gene029511:CDS | 45.0% | |
| GGATCTGTCAAATCATCAGC+AGG | - | 8714:8955-8974 | None:intergenic | 45.0% | |
| GGTAATTGAACCCTTCTTGG+TGG | - | 8714:8911-8930 | None:intergenic | 45.0% | |
| GTACAAGTCATTACCCTCAC+GGG | - | 8714:7330-7349 | None:intergenic | 45.0% | |
| GTTGCTTGCTCAACAAAAGC+AGG | - | 8714:6938-6957 | None:intergenic | 45.0% | |
| TAAGTCCAGTAAGACCGACA+CGG | - | 8714:7552-7571 | None:intergenic | 45.0% | |
| TACCAAAGGGGAGGAAAGAT+TGG | + | 8714:7104-7123 | MS.gene029511:CDS | 45.0% | |
| TGTAGCATCCAAGTGAGCAA+AGG | - | 8714:8992-9011 | None:intergenic | 45.0% | |
| TTAATGGCGCCTGTTTGGTT+TGG | + | 8714:6341-6360 | MS.gene029511:intron | 45.0% | |
| TTGGAAGTGGCTCAGCATTT+GGG | + | 8714:5954-5973 | MS.gene029511:CDS | 45.0% | |
| TTTACTGGAAAAGGAGCGGT+CGG | + | 8714:5825-5844 | MS.gene029511:CDS | 45.0% | |
| TTTCGATGAAGATCGGCGAA+GGG | - | 8714:5634-5653 | None:intergenic | 45.0% | |
| ! | AGCACGGATTTTCCTGCTAT+TGG | + | 8714:6593-6612 | MS.gene029511:intron | 45.0% |
| ! | TAATGGCGCCTGTTTGGTTT+GGG | + | 8714:6342-6361 | MS.gene029511:intron | 45.0% |
| ! | TAGGGAAGCATAAGAACCAC+TGG | + | 8714:8553-8572 | MS.gene029511:intron | 45.0% |
| ! | TCAGTAATTTTCCCACCTCC+GGG | - | 8714:5801-5820 | None:intergenic | 45.0% |
| ! | TTCTCTGTGTTTGCTGGTGT+TGG | + | 8714:7296-7315 | MS.gene029511:CDS | 45.0% |
| !! | ATTGGATTGTTTGGTGGTGC+TGG | + | 8714:7122-7141 | MS.gene029511:CDS | 45.0% |
| !! | GAGAGTGGTGTCATTAAGCT+GGG | + | 8714:7362-7381 | MS.gene029511:CDS | 45.0% |
| !! | TGAGAGTGGTGTCATTAAGC+TGG | + | 8714:7361-7380 | MS.gene029511:CDS | 45.0% |
| !! | TTCGAGATTGGTGTTGGAAG+TGG | + | 8714:5941-5960 | MS.gene029511:CDS | 45.0% |
| !!! | ATAATTAAATTAAATTTTGT+TGG | + | 8714:8018-8037 | MS.gene029511:intron | 5.0% |
| !!! | TTAAAGATTTAATTTATTTT+TGG | - | 8714:7978-7997 | None:intergenic | 5.0% |
| AAGACTTCTGCCACGTGGAA+AGG | - | 8714:9378-9397 | None:intergenic | 50.0% | |
| AAGGCCGCAAAAGAAAACCG+TGG | - | 8714:8173-8192 | None:intergenic | 50.0% | |
| AAGTCCAGTAAGACCGACAC+GGG | - | 8714:7551-7570 | None:intergenic | 50.0% | |
| AAGTGAGCAAAGGTGGTAGC+AGG | - | 8714:8982-9001 | None:intergenic | 50.0% | |
| AATCAGCGACGCGGTTTAAG+AGG | - | 8714:5719-5738 | None:intergenic | 50.0% | |
| ACCTGCTTGCACCATACCAA+AGG | + | 8714:7090-7109 | MS.gene029511:CDS | 50.0% | |
| AGCATCCAAGTGAGCAAAGG+TGG | - | 8714:8989-9008 | None:intergenic | 50.0% | |
| CAATCACTGCCTCAACATCG+AGG | + | 8714:5658-5677 | MS.gene029511:CDS | 50.0% | |
| CAATCTCGCGCTTCACCTTA+TGG | + | 8714:5690-5709 | MS.gene029511:CDS | 50.0% | |
| CAGATGGAATACGACCAAGC+AGG | - | 8714:8828-8847 | None:intergenic | 50.0% | |
| CAGCAGGCACATAGATAGCT+TGG | - | 8714:8939-8958 | None:intergenic | 50.0% | |
| CATAAGGTGAAGCGCGAGAT+TGG | - | 8714:5692-5711 | None:intergenic | 50.0% | |
| CCTGCTTGCACCATACCAAA+GGG | + | 8714:7091-7110 | MS.gene029511:CDS | 50.0% | |
| CTGCTTGCACCATACCAAAG+GGG | + | 8714:7092-7111 | MS.gene029511:CDS | 50.0% | |
| CTTAAGTCAGCCTTTCCACG+TGG | + | 8714:9365-9384 | MS.gene029511:CDS | 50.0% | |
| GAGCATTTCCGTGATGCTGA+AGG | + | 8714:7580-7599 | MS.gene029511:CDS | 50.0% | |
| GGATGGAGAGTTCTCAACAC+TGG | + | 8714:6029-6048 | MS.gene029511:CDS | 50.0% | |
| GGTCGTATTCCATCTGCTGT+TGG | + | 8714:8832-8851 | MS.gene029511:CDS | 50.0% | |
| GGTGGTTTCTCTGTGTTTGC+TGG | + | 8714:7290-7309 | MS.gene029511:intron | 50.0% | |
| GTAATTGGCAGCAGCAAGCT+TGG | + | 8714:7824-7843 | MS.gene029511:intron | 50.0% | |
| GTTGGAAGTGGCTCAGCATT+TGG | + | 8714:5953-5972 | MS.gene029511:CDS | 50.0% | |
| GTTGGAGAAAGAACCCGTGA+GGG | + | 8714:7314-7333 | MS.gene029511:CDS | 50.0% | |
| GTTGTACACCACGAGCAGTT+TGG | - | 8714:9233-9252 | None:intergenic | 50.0% | |
| GTTTCGATGAAGATCGGCGA+AGG | - | 8714:5635-5654 | None:intergenic | 50.0% | |
| TCAAGAGCAGTCAAGATCGG+AGG | - | 8714:5906-5925 | None:intergenic | 50.0% | |
| TCCGATCTTGACTGCTCTTG+AGG | + | 8714:5905-5924 | MS.gene029511:CDS | 50.0% | |
| TGCTACCACCTTTGCTCACT+TGG | + | 8714:8981-9000 | MS.gene029511:CDS | 50.0% | |
| TGTTGGAGAAAGAACCCGTG+AGG | + | 8714:7313-7332 | MS.gene029511:CDS | 50.0% | |
| ! | CATTTAGGTTCCCGTTGGCA+GGG | + | 8714:6711-6730 | MS.gene029511:intron | 50.0% |
| !! | CTGAAGGTGTTGTTCGTGGA+TGG | + | 8714:6012-6031 | MS.gene029511:CDS | 50.0% |
| !! | GCTACTGAAGGTGTTGTTCG+TGG | + | 8714:6008-6027 | MS.gene029511:CDS | 50.0% |
| !! | GGTTGGTAACCAACAGCAGA+TGG | - | 8714:8844-8863 | None:intergenic | 50.0% |
| !! | TTGTTTGGTGGTGCTGGTGT+AGG | + | 8714:7128-7147 | MS.gene029511:CDS | 50.0% |
| AAAAAGGAGGTTCCCGGAGG+TGG | + | 8714:5786-5805 | MS.gene029511:CDS | 55.0% | |
| AAAAGGAGGTTCCCGGAGGT+GGG | + | 8714:5787-5806 | MS.gene029511:CDS | 55.0% | |
| AGCGGTCGGTCAAGTTTGTC+AGG | + | 8714:5839-5858 | MS.gene029511:CDS | 55.0% | |
| CACGTGGCAGAAGTCTTCAC+TGG | + | 8714:9381-9400 | MS.gene029511:CDS | 55.0% | |
| CAGTGAAGACTTCTGCCACG+TGG | - | 8714:9383-9402 | None:intergenic | 55.0% | |
| CCCTTTGGTATGGTGCAAGC+AGG | - | 8714:7094-7113 | None:intergenic | 55.0% | |
| CGGTTGCATAATCAGCGACG+CGG | - | 8714:5728-5747 | None:intergenic | 55.0% | |
| CTTGCACCATACCAAAGGGG+AGG | + | 8714:7095-7114 | MS.gene029511:CDS | 55.0% | |
| GAGCACTACCAAACTGCTCG+TGG | + | 8714:9222-9241 | MS.gene029511:CDS | 55.0% | |
| GTGGCTCAGCATTTGGGTGA+AGG | + | 8714:5960-5979 | MS.gene029511:CDS | 55.0% | |
| ! | CGTCGCTGATTATGCAACCG+CGG | + | 8714:5728-5747 | MS.gene029511:CDS | 55.0% |
| ! | GCATTTAGGTTCCCGTTGGC+AGG | + | 8714:6710-6729 | MS.gene029511:intron | 55.0% |
| !! | GGAGGTTAGCCTCGATGTTG+AGG | - | 8714:5670-5689 | None:intergenic | 55.0% |
| AGGTGAAGCGCGAGATTGGG+AGG | - | 8714:5688-5707 | None:intergenic | 60.0% | |
| CCGGCGAAAAAGGAGGTTCC+CGG | + | 8714:5780-5799 | MS.gene029511:CDS | 60.0% | |
| GAAGTCTTCACTGGTGCCCC+AGG | + | 8714:9390-9409 | MS.gene029511:CDS | 60.0% | |
| GCAAAGGTGGTAGCAGGAGC+AGG | - | 8714:8976-8995 | None:intergenic | 60.0% | |
| GCGAAAAAGGAGGTTCCCGG+AGG | + | 8714:5783-5802 | MS.gene029511:CDS | 60.0% | |
| GGTCAGATGAATGAGCCCCC+TGG | + | 8714:7517-7536 | MS.gene029511:CDS | 60.0% | |
| TCCAAGGGTAGCCCTGCCAA+CGG | - | 8714:6725-6744 | None:intergenic | 60.0% | |
| !! | CCGGGAACCTCCTTTTTCGC+CGG | - | 8714:5783-5802 | None:intergenic | 60.0% |
| !! | GGAACCTCCTTTTTCGCCGG+AGG | - | 8714:5780-5799 | None:intergenic | 60.0% |
| !! | TCAGAGGTGTCTGCCCTGCT+TGG | + | 8714:8811-8830 | MS.gene029511:CDS | 60.0% |
| !! | TTTTTCGCCGGAGGCGCAGA+CGG | - | 8714:5771-5790 | None:intergenic | 60.0% |
| CCAAGGGTAGCCCTGCCAAC+GGG | - | 8714:6724-6743 | None:intergenic | 65.0% | |
| GTCTGCGCCTCCGGCGAAAA+AGG | + | 8714:5770-5789 | MS.gene029511:CDS | 65.0% | |
| TGCGCCTCCGGCGAAAAAGG+AGG | + | 8714:5773-5792 | MS.gene029511:CDS | 65.0% | |
| ! | CGTGCCCGTGTCGGTCTTAC+TGG | + | 8714:7544-7563 | MS.gene029511:CDS | 65.0% |
| ACACGGGCACGAGCACCAGG+GGG | - | 8714:7535-7554 | None:intergenic | 70.0% | |
| ACCAGCTCCGTCTGCGCCTC+CGG | + | 8714:5761-5780 | MS.gene029511:CDS | 70.0% | |
| AGGCGCAGACGGAGCTGGTG+CGG | - | 8714:5760-5779 | None:intergenic | 70.0% | |
| CCCGTTGGCAGGGCTACCCT+TGG | + | 8714:6721-6740 | MS.gene029511:CDS | 70.0% | |
| CCTGGTGCTCGTGCCCGTGT+CGG | + | 8714:7535-7554 | MS.gene029511:CDS | 70.0% | |
| CGACACGGGCACGAGCACCA+GGG | - | 8714:7537-7556 | None:intergenic | 70.0% | |
| GACACGGGCACGAGCACCAG+GGG | - | 8714:7536-7555 | None:intergenic | 70.0% | |
| CCGACACGGGCACGAGCACC+AGG | - | 8714:7538-7557 | None:intergenic | 75.0% | |
| CGCAGACGGAGCTGGTGCGG+CGG | - | 8714:5757-5776 | None:intergenic | 75.0% | |
| ! | AGCTGGTGCGGCGGCAGCCG+CGG | - | 8714:5748-5767 | None:intergenic | 80.0% |
| !! | GCCGGAGGCGCAGACGGAGC+TGG | - | 8714:5765-5784 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 8714 | gene | 5591 | 9452 | 5591 | ID=MS.gene029511 |
| 8714 | mRNA | 5591 | 9452 | 5591 | ID=MS.gene029511.t1;Parent=MS.gene029511 |
| 8714 | exon | 5591 | 6064 | 5591 | ID=MS.gene029511.t1.exon1;Parent=MS.gene029511.t1 |
| 8714 | CDS | 5591 | 6064 | 5591 | ID=cds.MS.gene029511.t1;Parent=MS.gene029511.t1 |
| 8714 | exon | 6718 | 6793 | 6718 | ID=MS.gene029511.t1.exon2;Parent=MS.gene029511.t1 |
| 8714 | CDS | 6718 | 6793 | 6718 | ID=cds.MS.gene029511.t1;Parent=MS.gene029511.t1 |
| 8714 | exon | 6900 | 6988 | 6900 | ID=MS.gene029511.t1.exon3;Parent=MS.gene029511.t1 |
| 8714 | CDS | 6900 | 6988 | 6900 | ID=cds.MS.gene029511.t1;Parent=MS.gene029511.t1 |
| 8714 | exon | 7083 | 7200 | 7083 | ID=MS.gene029511.t1.exon4;Parent=MS.gene029511.t1 |
| 8714 | CDS | 7083 | 7200 | 7083 | ID=cds.MS.gene029511.t1;Parent=MS.gene029511.t1 |
| 8714 | exon | 7291 | 7394 | 7291 | ID=MS.gene029511.t1.exon5;Parent=MS.gene029511.t1 |
| 8714 | CDS | 7291 | 7394 | 7291 | ID=cds.MS.gene029511.t1;Parent=MS.gene029511.t1 |
| 8714 | exon | 7490 | 7648 | 7490 | ID=MS.gene029511.t1.exon6;Parent=MS.gene029511.t1 |
| 8714 | CDS | 7490 | 7648 | 7490 | ID=cds.MS.gene029511.t1;Parent=MS.gene029511.t1 |
| 8714 | exon | 8805 | 9029 | 8805 | ID=MS.gene029511.t1.exon7;Parent=MS.gene029511.t1 |
| 8714 | CDS | 8805 | 9029 | 8805 | ID=cds.MS.gene029511.t1;Parent=MS.gene029511.t1 |
| 8714 | exon | 9141 | 9452 | 9141 | ID=MS.gene029511.t1.exon8;Parent=MS.gene029511.t1 |
| 8714 | CDS | 9141 | 9452 | 9141 | ID=cds.MS.gene029511.t1;Parent=MS.gene029511.t1 |
| Gene Sequence |
| Protein sequence |
