AlfalfaGEDB | MS.gene03434

M. sativa cultivar XinJiangDaYe / MS.gene03434

KEGG: K13126
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00076.25 PF00658.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03434.t1	RHN51194.1	89.8	620	63	0	1	620	1	620	0.00E+00	1088.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03434.t1	Q05196	50.2	620	274	8	24	616	58	669	3.3e-155	550.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03434.t1	A0A396HH90	89.8	620	63	0	1	620	1	620	0.0e+00	1088.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002591	MS.gene03434	PPI
MS.gene00401	MS.gene03434	PPI
MS.gene004260	MS.gene03434	PPI
MS.gene006089	MS.gene03434	PPI
MS.gene007355	MS.gene03434	PPI
MS.gene007592	MS.gene03434	PPI
MS.gene007840	MS.gene03434	PPI
MS.gene011787	MS.gene03434	PPI
MS.gene011973	MS.gene03434	PPI
MS.gene01572	MS.gene03434	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03434.t1	MTR_6g040190	88.871	620	69	0	1	620	1	620	0.0	1118
MS.gene03434.t1	MTR_1g097440	64.000	650	197	10	1	622	1	641	0.0	808
MS.gene03434.t1	MTR_6g040070	69.032	465	121	6	99	553	1	452	0.0	620
MS.gene03434.t1	MTR_6g040070	34.694	196	108	5	18	196	100	292	6.67e-22	100
MS.gene03434.t1	MTR_4g085540	52.504	619	260	11	22	617	31	638	0.0	591
MS.gene03434.t1	MTR_3g102040	50.158	634	236	14	14	612	13	601	0.0	551
MS.gene03434.t1	MTR_1g019150	57.522	452	174	6	12	447	14	463	1.58e-176	516
MS.gene03434.t1	MTR_7g102730	41.071	616	311	10	25	608	10	605	4.83e-138	416
MS.gene03434.t1	MTR_1g061870	45.495	455	219	9	4	452	1	432	8.76e-120	366
MS.gene03434.t1	MTR_0913s0010	91.429	70	6	0	553	622	1	70	3.46e-36	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03434.t1	AT1G22760	53.000	600	264	7	24	608	48	644	0.0	607
MS.gene03434.t1	AT1G71770	51.220	615	275	9	24	616	58	669	0.0	587
MS.gene03434.t1	AT1G71770	51.220	615	275	9	24	616	58	669	0.0	587
MS.gene03434.t1	AT4G34110	51.356	627	271	9	2	616	16	620	0.0	574
MS.gene03434.t1	AT2G23350	49.753	607	269	12	25	612	46	635	0.0	536
MS.gene03434.t1	AT1G49760	56.787	442	177	6	26	456	46	484	2.71e-168	496
MS.gene03434.t1	AT1G49760	56.787	442	177	6	26	456	46	484	2.71e-168	496
MS.gene03434.t1	AT2G36660	38.182	605	311	16	25	610	24	584	9.91e-115	355
MS.gene03434.t1	AT1G34140	52.507	379	164	6	83	459	1	365	3.90e-113	345
MS.gene03434.t1	AT1G34140	31.449	283	174	4	26	290	32	312	4.38e-37	143

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Find 144 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATATGAGAAATTACA+AGG	0.535183	6.2:-35187326	MS.gene03434:CDS
AAACCGTATCCGTCTGGCTG+AGG	0.574548	6.2:+35186388	None:intergenic
AAAGATATGAGAAATTACAA+GGG	0.704417	6.2:-35187325	MS.gene03434:CDS
AACAAAGGGTCTAAATACAA+TGG	0.632983	6.2:-35186104	MS.gene03434:CDS
AACTTCTCAAACGCTCGTGA+TGG	0.560289	6.2:-35189383	MS.gene03434:intron
AAGGTTGCTATGGATAGCAA+TGG	0.649706	6.2:-35187785	MS.gene03434:CDS
AAGTGTTGAAAAGCTGCTTA+AGG	0.508202	6.2:+35187567	None:intergenic
AATCTAGGGAATAGGATGGG+TGG	0.626543	6.2:-35186283	MS.gene03434:CDS
AATGATAAGAAAGTTTATGT+AGG	0.485281	6.2:-35187677	MS.gene03434:CDS
AATGGGAACTCTAAATGTTT+TGG	0.284735	6.2:-35187506	MS.gene03434:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAGGGTCTAAATACAA+TGG	-	chr6.2:35189128-35189147	MS.gene03434:intron	30.0%
AATCAAGCATCTCATAAAGA+AGG	+	chr6.2:35188316-35188335	None:intergenic	30.0%
ACATACACATTAGTGAACTT+AGG	+	chr6.2:35187612-35187631	None:intergenic	30.0%
ATCATGAATGATGTTGAACA+TGG	+	chr6.2:35186642-35186661	None:intergenic	30.0%
ATTGCCATTGAAAAATTGGA+TGG	-	chr6.2:35187522-35187541	MS.gene03434:CDS	30.0%
CATCAGTATATGATTCAGAA+AGG	+	chr6.2:35187641-35187660	None:intergenic	30.0%
CTACTCAAGAAAATCAACAT+CGG	-	chr6.2:35189285-35189304	MS.gene03434:intron	30.0%
GGATTCTTTAATATTGTGTC+GGG	-	chr6.2:35186510-35186529	MS.gene03434:intron	30.0%
GGGATTCTTTAATATTGTGT+CGG	-	chr6.2:35186509-35186528	MS.gene03434:intron	30.0%
TACTCAAGAAAATCAACATC+GGG	-	chr6.2:35189286-35189305	MS.gene03434:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	35185636	35189618	35185636	ID=MS.gene03434
chr6.2	mRNA	35185636	35189618	35185636	ID=MS.gene03434.t1;Parent=MS.gene03434
chr6.2	exon	35189384	35189618	35189384	ID=MS.gene03434.t1.exon1;Parent=MS.gene03434.t1
chr6.2	CDS	35189384	35189618	35189384	ID=cds.MS.gene03434.t1;Parent=MS.gene03434.t1
chr6.2	exon	35187232	35187998	35187232	ID=MS.gene03434.t1.exon2;Parent=MS.gene03434.t1
chr6.2	CDS	35187232	35187998	35187232	ID=cds.MS.gene03434.t1;Parent=MS.gene03434.t1
chr6.2	exon	35186984	35187061	35186984	ID=MS.gene03434.t1.exon3;Parent=MS.gene03434.t1
chr6.2	CDS	35186984	35187061	35186984	ID=cds.MS.gene03434.t1;Parent=MS.gene03434.t1
chr6.2	exon	35186809	35186898	35186809	ID=MS.gene03434.t1.exon4;Parent=MS.gene03434.t1
chr6.2	CDS	35186809	35186898	35186809	ID=cds.MS.gene03434.t1;Parent=MS.gene03434.t1
chr6.2	exon	35186237	35186524	35186237	ID=MS.gene03434.t1.exon5;Parent=MS.gene03434.t1
chr6.2	CDS	35186237	35186524	35186237	ID=cds.MS.gene03434.t1;Parent=MS.gene03434.t1
chr6.2	exon	35185947	35186144	35185947	ID=MS.gene03434.t1.exon6;Parent=MS.gene03434.t1
chr6.2	CDS	35185947	35186144	35185947	ID=cds.MS.gene03434.t1;Parent=MS.gene03434.t1
chr6.2	exon	35185636	35185848	35185636	ID=MS.gene03434.t1.exon7;Parent=MS.gene03434.t1
chr6.2	CDS	35185636	35185848	35185636	ID=cds.MS.gene03434.t1;Parent=MS.gene03434.t1

Gene Sequence

>MS.gene03434

ATGGCAGCAGTTGTTTCATCACCAAAGATCGTTGTTCCCGCGGCTTTGACCGGTGCTGGAAGATTTGAGAACGCTTCCTTGTATGTTGGTGATCTAGAAGGGAACGTGAATGATGCTCAACTGTATGAACTGTTTAGCCAAATTGCTCCAGTGGTTTCTGTTAGGATTTGCAGGGATCAGATGACACAGTCATCTCTTCGTTATGGTTATGTCAACTTCTCAAACGCTCGTGATGGTTTGTATTTCGAGTTTCATTATTTTATTATGTGTTTTTTGAATTCGATCTTTGGATAATATATTCTTATTGATGGAATGCATTGTGATTGTGTGAACACCTTATTGAAATTTTTTTTTGTTTGGAGAGAAAAAAAATAAGGGTTAGGTTTTTCAAAACTTATGGCAAATCTTAATTAAATTTGATGCCTATATATGATTACTAATGTACAATTATTTTTTCTGAAAGAGTAGAACCCTAGTATTTATAATCATGTTTTAAAGTCTTGTTTGTGTCTGAGATTATTTCATATTGTAGAGAATCACTGCCAAATACGCCCAAGTGGCCACAATTGTTGTTGTGTTTGTGATTGAAACCCTATTTGACATCATTTGTCATTTAAATCATGGCAGCAATTCTTTGATACTGTTGAAAGTTGTTGTCAAGTATGACTGATCTGACTGCAATTGTGTTAATGAAGTGATTGTGGAAATATCATAAACCTTGGCATCGTGACTACTAAAGTTGTTAAGATTTGCACAACTTGTTCCAATTCTTAATTGAGTTTTATGACTCTGATTACAAAAGGAGTAAAGTAAATTCCTTTTTCTGAGTAAAACCCCAGTAATTAAATTATGTTTTTATGTCGTGGTTAAGTCGGGATTCTTTAATATTGTGTCGGGATTCTTCGATCCCAATTTTAAATGTTATTATTCATTGCAGCCGCGTTACTAACATGCGAACATTAAAAATCGTAGTCACAATTTCTGATGTGGCTATTCTTTGAAACCATGTTCAACATCATTCATGATTTAAATCATCGTTGCGATCCTTGGTAATGTAGAAAATTGTTGCCAAACACGACTAATGCGGCTGCAATGTTGGCAATAGTCTATGCGTCAATGGTAGTCAGTTCTGCAATAGTAATGTGACTGTGGAAATATCATAAACCTTGGCAACGTGACTACAATTGACGCGTAGGTTGTGTTTTAGAATAGTATTTAAGTTGTTACTCTTGTTATCGGTGGTTTATGAGTACATTTGATATCACAAGATGAAGTCTTTTTATTTATGAGTTGTAGGTTATGTTATAAGCATGGTGAAAGAATTATTTTTTTAATTAAATACGTGGGGAAGAACAAGATTATCTGAATTTATGTTACTCACAGCTATATGTTGTATCTTTTTGGCATAAGAATTTTGAAGCTATATATTATAGTAGTTTTGAGGTAATATTCAACCGATAAGCTGATTTTGTGCTGTTGAGTTCGATTCGAAATTGAAGTACATATTATACGACAATGCATTCATTAATAAAAGAAAATGTGTTCAATTTATAAAATCATCTACAAAAACATTATTTTATCTATATCTGTTTCTTTAACTTCAAAAAAATTGTACTGCAGCTGCTAATGCGATGGAGACTTTGAACTATGTTACCCTGAATGGAAAGCCCATTCGTATTATGTTTTCTCATCGAGATCCTCTCATTCGGAAAACTGGATTTGCAAATCTGTTCATTAAGAATCTAGAAACATCAATAGATAACAAGGCATTACATGATACTTTTTCGGCTTTTGGACATGTGCTTTCTTGTAAGGTTGCTATGGATAGCAATGGTCAATCTAGGGGATTTGGTTTTGTTCAATTTGACAATGATAAGTCTGCAAAAATTGCCATTGAAAAATTGGATGGCATGCTGATAAATGATAAGAAAGTTTATGTAGGGTATTTTGTTCGGCGTCAAGAAAGGTCATCACCTAAGTTCACTAATGTGTATGTGAAAAACCTTTCTGAATCATATACTGATGAGGACCTTAAGCAGCTTTTCAACACTTTTGGCGTAATAACATGTGCTGTGATAATGAAACATGAGAATGGGAACTCTAAATGTTTTGGTTTTGTGAATTTCCAAAGCTCAGATTCAGCAGCTACTGCTGTTGCGAAGTTGAATGGGAGCACAACTAATGATGGGAAGGTTTTATTTGTCGGGAGGGCTCAGAAAAAATCAGAAAGGGAGGCAGAGTTGAAAGCTTTTTTTGAGCAAGAAAAGCTAAAAAGATATGAGAAATTACAAGGGTCTAATTTATACCTGAAAAACATTGATAAGAGTCTTAATGAAGAAAAACTGAAGGAGCTGTTTTCTGAGTTTGGAACAATAACATCTTGCAAGGTATATCAAAACTTATCTTTGAATAATATTCGTATCTTTGTTTATTTATTTCTTTAGTGCATGTGAGTGGATATACTCCATGGTTGTGTGTAACATGCATTTGTGTCATTACTCACTTCATAATTATTTGAATATCTGAAAGTATAACTGCATTTAATATGTTTCTTCAGGTAATGTCTGATGCTCGTGGCCGCAGCAAGGGCGTCGGTTTTGTTGCTTTTTCCACACCTGAGGAAGCGAGTAAAGCCGTATGTCATTTGTTAAAAAAGACTTTGCTCAACCAAATATATCCTTCTTTATGAGATGCTTGATTTGTATTATGTTTTTTTTTAGATCAATGAAATGAATGGGAAGATGATTGGACAGAAGCCCTTATATGTTTCTGTGGCCCAACGCAAAGAGGACAGGAAAGCTCAATTGCAGGTAAAGCTTGTGTAAACATATTATTTAAATTGACCTTATAATGATATTATGGATAAATCAATTATTCAATTACAATTTGATTTGGAGAAGTTTTTCAATTTGCTATATTTGTCGTGCCTGTCCAAATGTTGCTTTGTGAGTAGAAGTTTGATGATATGATGGTCTTTTCAGAAACATGCTTACTTTCATTTTTTTTGGTTTTCAATCCTAAACAAATTTAGTCTTTCTTGTATTGTATTTTGTACAAATTCAACAGTTAGATTCACAAGCTTGTGTAATTGCAGGCTCATTTTTCTGCAATTCAAGTATTGGGTGGAAATGCTGGATACAATTCAAGTGTACAAAGACTTGCTCCGCAACAATTTTATTATGCGCAAGGTACATTTGGTCTCATGTCGCCTCAGCCAGACGGATACGGTTTCCAGCCACAGTTCATGTCAGGTGTGGGAACTGGCTTTGTTACTCCAAATTACTTGCCGCCATACCACCTTCAAAGGCATGGAAATCTAGGGAATAGGATGGGTGGGCGTCCAGATGGTAACTTCCAGCAAGTGAGACACAAGCAAAACCAAGTACTTATTCCATAAATCTAAGTTTTTTTGTTTTGTAATTAATATTACTAAATAACTCATAATATTTGAAACAAATTTAATTTTGAACCTAGATGCGACCTCATAACCCGAACAAAGGGTCTAAATACAATGGTCAAAATGGCGTGGGTATGTCTGTAGATCCCGGAAGTCAAATGATGGATCCATCTGCAAGTGCTACAACCTCCATTGACAATAACCATCATGGTCCATTGTCTAACAAGTCGCTTGCTTCAGCTTTGGCTTCTGCTACTCAAGAAAATCAACATCGGGTATGTAAAAATTTGCTAGCTATATGTTAACCTTTGAATTTTCTTCTTAGAAGTGCAATACTATGTCGATATATTATAATGCATTGTTGGTTAAACAGATGCTGGAAGAACATTTGTTTCCTCTGGTCGGTCGTCTTACACCAACCAATCAGACTGCAAAGGTGACAAGAATGTTGCTTGAAATGGACCAGTCGGAGGTCATCCATCTGATTGAGTCACCTGAGGAGCTGAAGATGAAGGTGTCTGAAGCGATGCGGTTCCTTCGTGAAGCTTCACAAGGTCCTGCAGTTGGTGGTCAGATTGGCTCTTAA

Protein sequence

>MS.gene03434.t1

MAAVVSSPKIVVPAALTGAGRFENASLYVGDLEGNVNDAQLYELFSQIAPVVSVRICRDQMTQSSLRYGYVNFSNARDAANAMETLNYVTLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHDTFSAFGHVLSCKVAMDSNGQSRGFGFVQFDNDKSAKIAIEKLDGMLINDKKVYVGYFVRRQERSSPKFTNVYVKNLSESYTDEDLKQLFNTFGVITCAVIMKHENGNSKCFGFVNFQSSDSAATAVAKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKLQGSNLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFSTPEEASKAINEMNGKMIGQKPLYVSVAQRKEDRKAQLQAHFSAIQVLGGNAGYNSSVQRLAPQQFYYAQGTFGLMSPQPDGYGFQPQFMSGVGTGFVTPNYLPPYHLQRHGNLGNRMGGRPDGNFQQVRHKQNQMRPHNPNKGSKYNGQNGVGMSVDPGSQMMDPSASATTSIDNNHHGPLSNKSLASALASATQENQHRMLEEHLFPLVGRLTPTNQTAKVTRMLLEMDQSEVIHLIESPEELKMKVSEAMRFLREASQGPAVGGQIGS