Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20877.t1 | RHN81006.1 | 97.5 | 671 | 8 | 2 | 1 | 670 | 1 | 663 | 0.00E+00 | 1335.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20877.t1 | O22898 | 65.1 | 667 | 225 | 1 | 1 | 667 | 1 | 659 | 1.3e-271 | 936.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20877.t1 | A0A396JRT1 | 97.5 | 671 | 8 | 2 | 1 | 670 | 1 | 663 | 0.0e+00 | 1335.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20877.t1 | MTR_1g086600 | 94.205 | 673 | 27 | 3 | 1 | 670 | 23 | 686 | 0.0 | 1293 |
MS.gene20877.t1 | MTR_7g109830 | 78.475 | 669 | 136 | 1 | 1 | 669 | 1 | 661 | 0.0 | 1120 |
MS.gene20877.t1 | MTR_5g009350 | 51.502 | 666 | 313 | 2 | 4 | 669 | 6 | 661 | 0.0 | 698 |
MS.gene20877.t1 | MTR_8g099420 | 50.681 | 661 | 318 | 1 | 2 | 662 | 5 | 657 | 0.0 | 698 |
MS.gene20877.t1 | MTR_5g009350 | 51.459 | 651 | 308 | 1 | 4 | 654 | 6 | 648 | 0.0 | 686 |
MS.gene20877.t1 | MTR_5g009360 | 50.675 | 667 | 319 | 2 | 2 | 668 | 4 | 660 | 0.0 | 682 |
MS.gene20877.t1 | MTR_1g034360 | 47.210 | 663 | 340 | 3 | 4 | 665 | 5 | 658 | 0.0 | 638 |
MS.gene20877.t1 | MTR_4g068670 | 46.235 | 664 | 343 | 4 | 4 | 665 | 5 | 656 | 0.0 | 625 |
MS.gene20877.t1 | MTR_5g009350 | 49.474 | 570 | 278 | 2 | 4 | 571 | 6 | 567 | 0.0 | 578 |
MS.gene20877.t1 | MTR_5g009350 | 50.912 | 548 | 261 | 1 | 4 | 551 | 6 | 545 | 0.0 | 577 |
MS.gene20877.t1 | MTR_5g009360 | 51.141 | 526 | 255 | 1 | 143 | 668 | 11 | 534 | 0.0 | 543 |
MS.gene20877.t1 | MTR_1g104810 | 38.772 | 619 | 362 | 9 | 55 | 668 | 19 | 625 | 4.97e-134 | 408 |
MS.gene20877.t1 | MTR_1g104810 | 37.879 | 660 | 368 | 12 | 24 | 668 | 60 | 692 | 6.52e-134 | 410 |
MS.gene20877.t1 | MTR_1g030290 | 33.079 | 656 | 392 | 15 | 43 | 662 | 52 | 696 | 2.20e-102 | 327 |
MS.gene20877.t1 | MTR_3g087980 | 32.470 | 656 | 395 | 14 | 41 | 660 | 49 | 692 | 2.10e-98 | 317 |
MS.gene20877.t1 | MTR_3g082660 | 31.201 | 641 | 391 | 14 | 59 | 660 | 97 | 726 | 6.94e-87 | 287 |
MS.gene20877.t1 | MTR_3g084450 | 27.554 | 646 | 389 | 17 | 74 | 661 | 96 | 720 | 8.38e-51 | 188 |
MS.gene20877.t1 | MTR_3g084470 | 27.484 | 644 | 389 | 17 | 74 | 661 | 94 | 715 | 9.98e-48 | 179 |
MS.gene20877.t1 | MTR_8g083170 | 26.502 | 649 | 394 | 18 | 74 | 661 | 98 | 724 | 2.75e-47 | 178 |
MS.gene20877.t1 | MTR_3g084450 | 29.412 | 476 | 276 | 13 | 229 | 661 | 54 | 512 | 4.20e-43 | 163 |
MS.gene20877.t1 | MTR_5g007640 | 26.482 | 506 | 274 | 19 | 86 | 575 | 98 | 521 | 2.68e-24 | 108 |
MS.gene20877.t1 | MTR_1g063110 | 28.358 | 335 | 182 | 12 | 229 | 555 | 191 | 475 | 8.64e-24 | 106 |
MS.gene20877.t1 | MTR_5g008820 | 22.793 | 487 | 302 | 13 | 86 | 557 | 41 | 468 | 5.35e-23 | 103 |
MS.gene20877.t1 | MTR_1g063120 | 25.943 | 424 | 226 | 14 | 229 | 637 | 195 | 545 | 3.89e-22 | 101 |
MS.gene20877.t1 | MTR_2g095510 | 27.557 | 352 | 182 | 12 | 229 | 573 | 186 | 471 | 1.24e-21 | 99.8 |
MS.gene20877.t1 | MTR_2g095510 | 28.013 | 307 | 162 | 10 | 229 | 528 | 186 | 440 | 3.96e-21 | 97.4 |
MS.gene20877.t1 | MTR_1569s0010 | 25.048 | 523 | 301 | 18 | 86 | 575 | 23 | 487 | 4.65e-21 | 97.8 |
MS.gene20877.t1 | MTR_4g005750 | 26.230 | 488 | 269 | 17 | 86 | 555 | 54 | 468 | 1.30e-20 | 96.3 |
MS.gene20877.t1 | MTR_4g057730 | 27.273 | 352 | 183 | 13 | 229 | 573 | 189 | 474 | 1.36e-20 | 96.3 |
MS.gene20877.t1 | MTR_4g057730 | 27.381 | 336 | 180 | 13 | 229 | 555 | 189 | 469 | 1.44e-20 | 95.9 |
MS.gene20877.t1 | MTR_4g128337 | 25.180 | 556 | 299 | 22 | 74 | 605 | 50 | 512 | 5.37e-20 | 94.7 |
MS.gene20877.t1 | MTR_1g026310 | 25.826 | 333 | 193 | 11 | 228 | 555 | 204 | 487 | 3.02e-19 | 92.4 |
MS.gene20877.t1 | MTR_4g057730 | 27.508 | 309 | 161 | 12 | 229 | 528 | 189 | 443 | 3.44e-19 | 91.3 |
MS.gene20877.t1 | MTR_4g121600 | 22.819 | 596 | 343 | 18 | 86 | 648 | 47 | 558 | 3.49e-19 | 92.0 |
MS.gene20877.t1 | MTR_2g044180 | 22.779 | 619 | 368 | 21 | 55 | 648 | 25 | 558 | 4.79e-19 | 91.7 |
MS.gene20877.t1 | MTR_3g064420 | 24.131 | 489 | 287 | 19 | 86 | 550 | 41 | 469 | 2.13e-18 | 89.7 |
MS.gene20877.t1 | MTR_8g074040 | 22.360 | 483 | 297 | 13 | 87 | 550 | 84 | 507 | 4.65e-18 | 88.6 |
MS.gene20877.t1 | MTR_5g008800 | 21.721 | 488 | 308 | 11 | 86 | 557 | 41 | 470 | 6.12e-18 | 88.2 |
MS.gene20877.t1 | MTR_1g090737 | 26.761 | 355 | 182 | 10 | 229 | 573 | 212 | 498 | 1.30e-17 | 87.0 |
MS.gene20877.t1 | MTR_8g074120 | 24.842 | 475 | 264 | 17 | 111 | 554 | 19 | 431 | 1.30e-17 | 87.0 |
MS.gene20877.t1 | MTR_5g027480 | 23.643 | 571 | 347 | 18 | 63 | 614 | 51 | 551 | 1.26e-16 | 84.0 |
MS.gene20877.t1 | MTR_2g044180 | 23.164 | 531 | 307 | 17 | 143 | 648 | 13 | 467 | 4.68e-16 | 81.6 |
MS.gene20877.t1 | MTR_2g105570 | 35.294 | 170 | 99 | 8 | 393 | 555 | 310 | 475 | 5.71e-15 | 78.6 |
MS.gene20877.t1 | MTR_8g074040 | 25.000 | 364 | 195 | 12 | 206 | 550 | 85 | 389 | 1.48e-14 | 77.0 |
MS.gene20877.t1 | MTR_5g023730 | 30.137 | 219 | 132 | 8 | 422 | 623 | 329 | 543 | 1.63e-13 | 73.9 |
MS.gene20877.t1 | MTR_4g077900 | 32.530 | 166 | 106 | 5 | 393 | 555 | 243 | 405 | 7.54e-12 | 68.6 |
MS.gene20877.t1 | MTR_1g073180 | 30.909 | 165 | 109 | 5 | 393 | 555 | 300 | 461 | 2.14e-11 | 67.4 |
MS.gene20877.t1 | MTR_1g073180 | 30.909 | 165 | 109 | 5 | 393 | 555 | 322 | 483 | 2.46e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20877.t1 | AT2G47240 | 65.067 | 667 | 225 | 1 | 1 | 667 | 1 | 659 | 0.0 | 938 |
MS.gene20877.t1 | AT2G47240 | 65.067 | 667 | 225 | 1 | 1 | 667 | 1 | 659 | 0.0 | 938 |
MS.gene20877.t1 | AT2G47240 | 65.067 | 667 | 225 | 1 | 1 | 667 | 1 | 659 | 0.0 | 938 |
MS.gene20877.t1 | AT2G47240 | 66.000 | 600 | 204 | 0 | 68 | 667 | 1 | 600 | 0.0 | 868 |
MS.gene20877.t1 | AT4G23850 | 49.247 | 664 | 329 | 1 | 2 | 665 | 5 | 660 | 0.0 | 696 |
MS.gene20877.t1 | AT4G11030 | 50.302 | 662 | 319 | 3 | 2 | 662 | 5 | 657 | 0.0 | 684 |
MS.gene20877.t1 | AT1G64400 | 49.772 | 659 | 322 | 2 | 4 | 661 | 6 | 656 | 0.0 | 675 |
MS.gene20877.t1 | AT1G49430 | 46.870 | 655 | 338 | 3 | 8 | 660 | 11 | 657 | 0.0 | 619 |
MS.gene20877.t1 | AT1G49430 | 45.200 | 500 | 265 | 2 | 8 | 506 | 11 | 502 | 3.49e-155 | 458 |
MS.gene20877.t1 | AT5G27600 | 38.308 | 650 | 379 | 10 | 24 | 668 | 63 | 695 | 1.43e-141 | 430 |
MS.gene20877.t1 | AT3G05970 | 40.439 | 638 | 355 | 10 | 36 | 668 | 78 | 695 | 5.35e-140 | 426 |
MS.gene20877.t1 | AT1G77590 | 32.263 | 654 | 394 | 15 | 42 | 660 | 51 | 690 | 1.93e-101 | 325 |
MS.gene20877.t1 | AT2G04350 | 30.840 | 655 | 402 | 14 | 45 | 660 | 77 | 719 | 2.77e-90 | 296 |
MS.gene20877.t1 | AT2G04350 | 30.840 | 655 | 402 | 14 | 45 | 660 | 77 | 719 | 2.77e-90 | 296 |
MS.gene20877.t1 | AT1G77590 | 33.333 | 555 | 336 | 12 | 127 | 660 | 3 | 544 | 6.43e-90 | 290 |
MS.gene20877.t1 | AT3G23790 | 26.698 | 648 | 390 | 18 | 74 | 661 | 100 | 722 | 6.97e-50 | 186 |
MS.gene20877.t1 | AT4G14070 | 25.701 | 642 | 391 | 17 | 74 | 660 | 116 | 726 | 4.14e-47 | 178 |
MS.gene20877.t1 | AT2G47245 | 55.446 | 101 | 37 | 1 | 3 | 103 | 36 | 128 | 2.04e-29 | 113 |
MS.gene20877.t1 | AT1G66120 | 24.853 | 511 | 286 | 13 | 86 | 570 | 41 | 479 | 4.09e-24 | 107 |
MS.gene20877.t1 | AT1G21530 | 25.519 | 482 | 288 | 15 | 86 | 552 | 42 | 467 | 2.69e-23 | 104 |
MS.gene20877.t1 | AT2G17650 | 25.096 | 522 | 281 | 15 | 86 | 573 | 88 | 533 | 3.17e-23 | 105 |
MS.gene20877.t1 | AT1G21530 | 25.311 | 482 | 287 | 15 | 86 | 552 | 42 | 465 | 4.77e-22 | 100 |
MS.gene20877.t1 | AT3G16910 | 23.980 | 588 | 347 | 19 | 86 | 648 | 49 | 561 | 5.55e-22 | 100 |
MS.gene20877.t1 | AT1G65060 | 26.975 | 519 | 266 | 23 | 86 | 581 | 77 | 505 | 1.12e-21 | 99.8 |
MS.gene20877.t1 | AT1G20560 | 23.347 | 484 | 295 | 12 | 86 | 550 | 43 | 469 | 1.68e-21 | 99.4 |
MS.gene20877.t1 | AT1G65060 | 27.253 | 466 | 241 | 20 | 86 | 529 | 77 | 466 | 1.90e-21 | 98.6 |
MS.gene20877.t1 | AT1G65890 | 23.699 | 519 | 282 | 17 | 86 | 570 | 41 | 479 | 4.06e-21 | 98.2 |
MS.gene20877.t1 | AT1G65880 | 23.838 | 495 | 280 | 15 | 86 | 550 | 41 | 468 | 7.07e-21 | 97.4 |
MS.gene20877.t1 | AT1G51680 | 26.950 | 564 | 313 | 23 | 74 | 619 | 57 | 539 | 1.06e-20 | 96.7 |
MS.gene20877.t1 | AT4G19010 | 29.167 | 336 | 178 | 13 | 229 | 555 | 205 | 489 | 1.81e-20 | 96.3 |
MS.gene20877.t1 | AT1G77240 | 24.089 | 494 | 288 | 18 | 86 | 555 | 41 | 471 | 1.63e-19 | 93.2 |
MS.gene20877.t1 | AT1G51680 | 27.063 | 521 | 291 | 22 | 74 | 573 | 57 | 509 | 1.64e-19 | 93.2 |
MS.gene20877.t1 | AT4G05160 | 28.205 | 351 | 181 | 12 | 229 | 573 | 191 | 476 | 3.50e-19 | 92.0 |
MS.gene20877.t1 | AT1G51680 | 27.200 | 500 | 278 | 21 | 74 | 555 | 57 | 488 | 4.47e-19 | 91.3 |
MS.gene20877.t1 | AT1G20560 | 25.905 | 359 | 194 | 10 | 208 | 550 | 89 | 391 | 1.38e-17 | 86.7 |
MS.gene20877.t1 | AT5G63380 | 27.711 | 332 | 184 | 13 | 229 | 555 | 205 | 485 | 2.18e-16 | 83.2 |
MS.gene20877.t1 | AT3G21230 | 31.797 | 217 | 131 | 6 | 393 | 606 | 331 | 533 | 3.23e-16 | 82.8 |
MS.gene20877.t1 | AT3G21230 | 32.547 | 212 | 126 | 6 | 393 | 601 | 331 | 528 | 5.42e-16 | 82.0 |
MS.gene20877.t1 | AT3G21230 | 34.337 | 166 | 105 | 4 | 393 | 555 | 331 | 495 | 6.38e-15 | 78.6 |
MS.gene20877.t1 | AT5G16370 | 32.948 | 173 | 99 | 8 | 396 | 555 | 302 | 470 | 3.56e-13 | 73.2 |
MS.gene20877.t1 | AT5G16340 | 32.370 | 173 | 100 | 7 | 396 | 555 | 302 | 470 | 8.11e-13 | 72.0 |
MS.gene20877.t1 | AT5G38120 | 26.645 | 304 | 167 | 13 | 229 | 528 | 200 | 451 | 6.66e-12 | 68.9 |
MS.gene20877.t1 | AT1G75960 | 34.615 | 156 | 87 | 7 | 410 | 552 | 314 | 467 | 6.94e-12 | 68.9 |
MS.gene20877.t1 | AT5G38120 | 26.645 | 304 | 167 | 13 | 229 | 528 | 200 | 451 | 8.28e-12 | 68.6 |
MS.gene20877.t1 | AT5G38120 | 26.645 | 304 | 167 | 13 | 229 | 528 | 200 | 451 | 9.19e-12 | 68.2 |
MS.gene20877.t1 | AT5G38120 | 26.645 | 304 | 167 | 13 | 229 | 528 | 200 | 451 | 9.19e-12 | 68.2 |
MS.gene20877.t1 | AT1G68270 | 32.402 | 179 | 92 | 8 | 396 | 555 | 275 | 443 | 3.92e-11 | 66.6 |
Find 136 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATTTAAGATTTGGGTATA+TGG | 0.208667 | 1.3:+61349135 | MS.gene20877:intron |
ACGAATTGATTCCATGTATA+TGG | 0.245820 | 1.3:-61344275 | None:intergenic |
AATTTATTTCACTGTTTATA+AGG | 0.250750 | 1.3:+61342889 | MS.gene20877:CDS |
AGGTAGAAACCTCAAAATTT+AGG | 0.261202 | 1.3:-61350816 | None:intergenic |
ATACTTACATCTTCAACTAT+TGG | 0.314643 | 1.3:-61349021 | None:intergenic |
TTGGTCAAGCGAACATAGTT+TGG | 0.320137 | 1.3:-61349253 | None:intergenic |
ATTACCTTTCAATCTCTTAG+AGG | 0.321844 | 1.3:-61344087 | None:intergenic |
AGACCCGCTTCCATTTGATA+TGG | 0.328595 | 1.3:+61349902 | MS.gene20877:CDS |
GTGGAACCATCCATCTATTA+TGG | 0.334919 | 1.3:-61348770 | None:intergenic |
TTCTTCAATCTCAGAGCTTA+AGG | 0.341131 | 1.3:-61348204 | None:intergenic |
TGTGTTAAAACAACACCTTT+AGG | 0.342951 | 1.3:-61345244 | None:intergenic |
TATTTAAGATTTGGGTATAT+GGG | 0.344059 | 1.3:+61349136 | MS.gene20877:intron |
TTTGCAACCACTTACAGATT+TGG | 0.352883 | 1.3:-61343235 | None:intergenic |
CAACATGCTCAAGTATTATA+AGG | 0.357038 | 1.3:+61349965 | MS.gene20877:CDS |
GTCAAGTATTTGTCCTCCTT+TGG | 0.368480 | 1.3:+61345174 | MS.gene20877:CDS |
TCCTGATTTCACCTCTGCTT+GGG | 0.376030 | 1.3:+61342854 | MS.gene20877:CDS |
TTATTAGCAACATCTTCATT+TGG | 0.377802 | 1.3:-61349195 | None:intergenic |
ATGAAGATGTTGCTAATAAG+TGG | 0.378171 | 1.3:+61349199 | MS.gene20877:CDS |
TTGTATGTCTTCCAAACATA+TGG | 0.379295 | 1.3:-61343159 | None:intergenic |
CATAGATAGGACCATATGTT+TGG | 0.379474 | 1.3:+61343148 | MS.gene20877:intron |
CCTAGCATGCACATTTCATC+TGG | 0.398573 | 1.3:-61348589 | None:intergenic |
GAAGGATCTGAATGCGTTGC+TGG | 0.399764 | 1.3:+61347376 | MS.gene20877:intron |
GAGAGAAGGTTACGGTAAAC+AGG | 0.400121 | 1.3:-61342807 | None:intergenic |
ACAAAAGAAGCCATAATAGA+TGG | 0.412059 | 1.3:+61348760 | MS.gene20877:CDS |
ATCCTGATTTCACCTCTGCT+TGG | 0.423007 | 1.3:+61342853 | MS.gene20877:CDS |
ATAATCCTCATAATACCATT+AGG | 0.434153 | 1.3:-61348916 | None:intergenic |
CATCCGTTGGTTACTATCAC+GGG | 0.436619 | 1.3:+61345523 | MS.gene20877:CDS |
TGCTTCCTAATGGTATTATG+AGG | 0.438775 | 1.3:+61348911 | MS.gene20877:CDS |
TGGTTTAATTCCAGCGTTTG+TGG | 0.443623 | 1.3:-61344255 | None:intergenic |
TCCCAAGCAGAGGTGAAATC+AGG | 0.444690 | 1.3:-61342855 | None:intergenic |
ATAGCACATATCTCTTCAAT+TGG | 0.447684 | 1.3:-61349272 | None:intergenic |
CGTGTTAGACTAATAATATC+TGG | 0.450794 | 1.3:+61348173 | MS.gene20877:CDS |
TTCCGTAACGGTGCATCCGT+TGG | 0.452387 | 1.3:+61345510 | MS.gene20877:CDS |
ATGGAATCAATTCGTACAAA+AGG | 0.460579 | 1.3:+61344283 | MS.gene20877:CDS |
CGATCAAGGATGTGAGCTAA+AGG | 0.462061 | 1.3:-61345468 | None:intergenic |
TCAAGATAAGAAGGTTAAAG+AGG | 0.465855 | 1.3:+61343904 | MS.gene20877:CDS |
TTAAAGCCAACATTGTTTGC+TGG | 0.471080 | 1.3:+61347413 | MS.gene20877:CDS |
TCTGGAAATGTAAGAGTAGT+TGG | 0.472023 | 1.3:-61348571 | None:intergenic |
AAGTCTCTTTCCATATCAAA+TGG | 0.472138 | 1.3:-61349912 | None:intergenic |
AGAGGATTGTAACCCATGTC+TGG | 0.475731 | 1.3:-61348661 | None:intergenic |
CATGGAACAATTTGAGGACA+AGG | 0.478090 | 1.3:+61345306 | MS.gene20877:CDS |
GAATAGCTTCAAGTCAATAC+TGG | 0.479819 | 1.3:+61349158 | MS.gene20877:CDS |
AAAGATGAGGCCACAAACGC+TGG | 0.481975 | 1.3:+61344245 | MS.gene20877:CDS |
ATTGGAGAAATGCTTCCTAA+TGG | 0.484911 | 1.3:+61348901 | MS.gene20877:CDS |
CCAGATGAAATGTGCATGCT+AGG | 0.486775 | 1.3:+61348589 | MS.gene20877:CDS |
ACATCCTCAAAACCGCATGC+TGG | 0.486879 | 1.3:+61342989 | MS.gene20877:CDS |
CATCCTCAAAACCGCATGCT+GGG | 0.489805 | 1.3:+61342990 | MS.gene20877:CDS |
GGATGGCGTAAAATTGTTGA+TGG | 0.493101 | 1.3:+61343011 | MS.gene20877:CDS |
AACCAACGGATGCACCGTTA+CGG | 0.493528 | 1.3:-61345512 | None:intergenic |
CTCAAAACCGCATGCTGGGA+TGG | 0.496069 | 1.3:+61342994 | MS.gene20877:CDS |
AATCTTGTTAAGCTTTCTCA+AGG | 0.500570 | 1.3:+61348952 | MS.gene20877:CDS |
TAATGAAGTGAAGCCCACTA+TGG | 0.502558 | 1.3:-61344210 | None:intergenic |
ATTCTTCAATACAACGATCA+AGG | 0.508652 | 1.3:-61345482 | None:intergenic |
AATTAAGGTTGAGGAAGGAA+AGG | 0.508909 | 1.3:+61342755 | MS.gene20877:CDS |
AAGGTTGAGGAAGGAAAGGA+AGG | 0.508962 | 1.3:+61342759 | MS.gene20877:CDS |
AACGTACTAGCTTTAGTAAG+AGG | 0.510169 | 1.3:+61345271 | MS.gene20877:CDS |
GCGTAAAATTGTTGATGGAA+AGG | 0.513370 | 1.3:+61343016 | MS.gene20877:CDS |
GAACTATACAAAAGTTTGAC+TGG | 0.515018 | 1.3:+61350786 | MS.gene20877:CDS |
CAAGGTCCTTACCATAGCCT+TGG | 0.521183 | 1.3:-61348259 | None:intergenic |
GACATGGGTTACAATCCTCT+TGG | 0.525689 | 1.3:+61348664 | MS.gene20877:CDS |
GTATTATGAGGATTATTGAC+AGG | 0.526644 | 1.3:+61348923 | MS.gene20877:CDS |
CCTCTATGAAATTAGTTGAA+GGG | 0.527464 | 1.3:+61349852 | MS.gene20877:intron |
CTGGAATTAAACCATATACA+TGG | 0.532708 | 1.3:+61344264 | MS.gene20877:CDS |
CATTGTTTGCTGGTGTACCA+CGG | 0.533381 | 1.3:+61347423 | MS.gene20877:CDS |
AATAAGTGGGCATATGCAAA+TGG | 0.534338 | 1.3:+61349213 | MS.gene20877:CDS |
GTATATATCCTAGGGGACAT+TGG | 0.534838 | 1.3:+61348883 | MS.gene20877:intron |
AAGGAGGACAAATACTTGAC+GGG | 0.536225 | 1.3:-61345171 | None:intergenic |
TGTATTCAATGAATTGCGGC+TGG | 0.537145 | 1.3:+61348630 | MS.gene20877:CDS |
GATCAAGGATGTGAGCTAAA+GGG | 0.537448 | 1.3:-61345467 | None:intergenic |
GAGGTGAAATCAGGATCCAT+TGG | 0.538563 | 1.3:-61342846 | None:intergenic |
ATTTGATATGGAAAGAGACT+TGG | 0.545381 | 1.3:+61349914 | MS.gene20877:CDS |
GCCTTTGTATGCCAAGGCTA+TGG | 0.547652 | 1.3:+61348248 | MS.gene20877:CDS |
GGCTACACTTACAGCCATAG+TGG | 0.547898 | 1.3:+61344196 | MS.gene20877:intron |
ATTGTTTGCTGGTGTACCAC+GGG | 0.549536 | 1.3:+61347424 | MS.gene20877:CDS |
AAGGGATTTGAACATATCAA+AGG | 0.551479 | 1.3:+61349870 | MS.gene20877:CDS |
GCATCCGTTGGTTACTATCA+CGG | 0.552275 | 1.3:+61345522 | MS.gene20877:CDS |
AAAGGAGGACAAATACTTGA+CGG | 0.560929 | 1.3:-61345172 | None:intergenic |
TGCACAATAATGTATACAAG+TGG | 0.561176 | 1.3:+61345208 | MS.gene20877:CDS |
TTTCCATATCAAATGGAAGC+GGG | 0.571957 | 1.3:-61349905 | None:intergenic |
ATGTATACAAGTGGAACTAG+TGG | 0.575171 | 1.3:+61345217 | MS.gene20877:CDS |
TCCGCAATGGATTATCGCAA+TGG | 0.577762 | 1.3:+61343580 | MS.gene20877:CDS |
ACTTGTGCCTTTGTATGCCA+AGG | 0.583881 | 1.3:+61348242 | MS.gene20877:CDS |
CATTAGGTCAAAGCAAGGCT+AGG | 0.588553 | 1.3:+61348146 | MS.gene20877:intron |
GTGAAATCAGGATCCATTGG+AGG | 0.590379 | 1.3:-61342843 | None:intergenic |
AAATCCTCTAAGAGATTGAA+AGG | 0.590421 | 1.3:+61344083 | MS.gene20877:CDS |
ACTAGCTTTAGTAAGAGGAA+TGG | 0.591608 | 1.3:+61345276 | MS.gene20877:CDS |
AAGCGAACATAGTTTGGAGA+AGG | 0.595063 | 1.3:-61349247 | None:intergenic |
TGAAGATGTTGCTAATAAGT+GGG | 0.599300 | 1.3:+61349200 | MS.gene20877:CDS |
ATGGATCTAACTGTCCGCAA+TGG | 0.599344 | 1.3:+61343567 | MS.gene20877:CDS |
ACCATAGCCTTGGCATACAA+AGG | 0.601421 | 1.3:-61348249 | None:intergenic |
AAGAAGCCATAATAGATGGA+TGG | 0.604745 | 1.3:+61348764 | MS.gene20877:CDS |
GATGTGAGCTAAAGGGAGGA+AGG | 0.614011 | 1.3:-61345460 | None:intergenic |
GTGCATATGTCATGAGCCAA+AGG | 0.615739 | 1.3:-61345190 | None:intergenic |
AGATCTACTAGCCTTCAGAA+AGG | 0.615866 | 1.3:+61348037 | MS.gene20877:CDS |
ATGTGCATGCTAGGCAATGT+TGG | 0.618977 | 1.3:+61348598 | MS.gene20877:CDS |
TTGCTTTGTGTAGATGACTG+TGG | 0.621448 | 1.3:+61345422 | MS.gene20877:intron |
GCTTCTGCTTTAAAAGCATG+TGG | 0.622653 | 1.3:+61343210 | MS.gene20877:CDS |
TTACCAAGTGTGTCATAGAG+AGG | 0.623853 | 1.3:-61343744 | None:intergenic |
CTTTCCATATCAAATGGAAG+CGG | 0.623939 | 1.3:-61349906 | None:intergenic |
CACACACACAACCTTTCTGA+AGG | 0.627067 | 1.3:-61348048 | None:intergenic |
GGTACACCAGCAAACAATGT+TGG | 0.629012 | 1.3:-61347419 | None:intergenic |
ATCTACAGCTGTGAGAAACA+AGG | 0.630405 | 1.3:+61349305 | MS.gene20877:CDS |
GTCCCTCTCTATGACACACT+TGG | 0.632501 | 1.3:+61343741 | MS.gene20877:CDS |
GGAACTAGTGGAGATCCTAA+AGG | 0.633228 | 1.3:+61345229 | MS.gene20877:CDS |
TAACTGTATTCAATGAATTG+CGG | 0.635370 | 1.3:+61348626 | MS.gene20877:CDS |
AAACTTGGCTGGATGAACAA+AGG | 0.640671 | 1.3:+61347984 | MS.gene20877:CDS |
TACCAAGTGTGTCATAGAGA+GGG | 0.641665 | 1.3:-61343743 | None:intergenic |
GGGCTTCACTTCATTAACTG+AGG | 0.642336 | 1.3:+61344217 | MS.gene20877:CDS |
CTGACACATATCTCACCACA+TGG | 0.645144 | 1.3:-61348694 | None:intergenic |
AACTGAGGAAGAGAAAGATG+AGG | 0.647032 | 1.3:+61344232 | MS.gene20877:CDS |
GCTGGAGGAAGTTCCAGACA+TGG | 0.647892 | 1.3:+61348648 | MS.gene20877:CDS |
TGAAATCAGGATCCATTGGA+GGG | 0.649258 | 1.3:-61342842 | None:intergenic |
GCAATGGATTATCGCAATGG+AGG | 0.650146 | 1.3:+61343583 | MS.gene20877:CDS |
ATATGTTTGGAAGACATACA+AGG | 0.657772 | 1.3:+61343161 | MS.gene20877:CDS |
GCTACACTTACAGCCATAGT+GGG | 0.658633 | 1.3:+61344197 | MS.gene20877:intron |
CTGGAGGAAGTTCCAGACAT+GGG | 0.659695 | 1.3:+61348649 | MS.gene20877:CDS |
ATTCAATGAATTGCGGCTGG+AGG | 0.661838 | 1.3:+61348633 | MS.gene20877:CDS |
CATATGTCATGAGCCAAAGG+AGG | 0.664582 | 1.3:-61345187 | None:intergenic |
CCTGAAAATATCCCAAGCAG+AGG | 0.666120 | 1.3:-61342865 | None:intergenic |
CACACCATTAGGTCAAAGCA+AGG | 0.667533 | 1.3:+61348141 | MS.gene20877:intron |
CCAGGTTTGACAGAAACATG+TGG | 0.679060 | 1.3:+61348547 | MS.gene20877:intron |
GGATCTGAATGCGTTGCTGG+AGG | 0.681374 | 1.3:+61347379 | MS.gene20877:intron |
CAAGGATGTGAGCTAAAGGG+AGG | 0.681394 | 1.3:-61345464 | None:intergenic |
GAAGAGAAAATCAACCTGTG+TGG | 0.682894 | 1.3:-61348789 | None:intergenic |
TAGGTCAAAGCAAGGCTAGG+CGG | 0.689698 | 1.3:+61348149 | MS.gene20877:intron |
TGCAGGTATCAAGAAAGCAG+TGG | 0.690402 | 1.3:+61347582 | MS.gene20877:intron |
CCTCTTGGAACTCCTCCATG+TGG | 0.694715 | 1.3:+61348679 | MS.gene20877:CDS |
TACCCCGTGATAGTAACCAA+CGG | 0.697826 | 1.3:-61345526 | None:intergenic |
ATCCGTTGGTTACTATCACG+GGG | 0.701112 | 1.3:+61345524 | MS.gene20877:CDS |
TCCATTGCGATAATCCATTG+CGG | 0.701887 | 1.3:-61343581 | None:intergenic |
ATAGATGGATGGTTCCACAC+AGG | 0.705801 | 1.3:+61348775 | MS.gene20877:CDS |
GTTAGACTAATAATATCTGG+AGG | 0.707528 | 1.3:+61348176 | MS.gene20877:CDS |
TGTGGTGAGATATGTGTCAG+AGG | 0.711445 | 1.3:+61348697 | MS.gene20877:CDS |
CCACATGGAGGAGTTCCAAG+AGG | 0.716589 | 1.3:-61348679 | None:intergenic |
ACACATATCTCACCACATGG+AGG | 0.748292 | 1.3:-61348691 | None:intergenic |
TGGCACAACTAAATCCAGTG+AGG | 0.766617 | 1.3:+61347602 | MS.gene20877:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 61342741 | 61350827 | 61342741 | ID=MS.gene20877 |
chr1.3 | mRNA | 61342741 | 61350827 | 61342741 | ID=MS.gene20877.t1;Parent=MS.gene20877 |
chr1.3 | exon | 61342741 | 61342910 | 61342741 | ID=MS.gene20877.t1.exon1;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61342741 | 61342910 | 61342741 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61342974 | 61343037 | 61342974 | ID=MS.gene20877.t1.exon2;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61342974 | 61343037 | 61342974 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61343153 | 61343242 | 61343153 | ID=MS.gene20877.t1.exon3;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61343153 | 61343242 | 61343153 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61343548 | 61343604 | 61343548 | ID=MS.gene20877.t1.exon4;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61343548 | 61343604 | 61343548 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61343714 | 61343762 | 61343714 | ID=MS.gene20877.t1.exon5;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61343714 | 61343762 | 61343714 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61343849 | 61343925 | 61343849 | ID=MS.gene20877.t1.exon6;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61343849 | 61343925 | 61343849 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61344065 | 61344104 | 61344065 | ID=MS.gene20877.t1.exon7;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61344065 | 61344104 | 61344065 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61344210 | 61344304 | 61344210 | ID=MS.gene20877.t1.exon8;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61344210 | 61344304 | 61344210 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61345160 | 61345327 | 61345160 | ID=MS.gene20877.t1.exon9;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61345160 | 61345327 | 61345160 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61345435 | 61345545 | 61345435 | ID=MS.gene20877.t1.exon10;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61345435 | 61345545 | 61345435 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61347380 | 61347467 | 61347380 | ID=MS.gene20877.t1.exon11;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61347380 | 61347467 | 61347380 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61347587 | 61347653 | 61347587 | ID=MS.gene20877.t1.exon12;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61347587 | 61347653 | 61347587 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61347983 | 61348058 | 61347983 | ID=MS.gene20877.t1.exon13;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61347983 | 61348058 | 61347983 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61348152 | 61348269 | 61348152 | ID=MS.gene20877.t1.exon14;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61348152 | 61348269 | 61348152 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61348551 | 61348796 | 61348551 | ID=MS.gene20877.t1.exon15;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61348551 | 61348796 | 61348551 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61348896 | 61349035 | 61348896 | ID=MS.gene20877.t1.exon16;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61348896 | 61349035 | 61348896 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61349144 | 61349326 | 61349144 | ID=MS.gene20877.t1.exon17;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61349144 | 61349326 | 61349144 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61349867 | 61349986 | 61349867 | ID=MS.gene20877.t1.exon18;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61349867 | 61349986 | 61349867 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
chr1.3 | exon | 61350774 | 61350827 | 61350774 | ID=MS.gene20877.t1.exon19;Parent=MS.gene20877.t1 |
chr1.3 | CDS | 61350774 | 61350827 | 61350774 | ID=cds.MS.gene20877.t1;Parent=MS.gene20877.t1 |
Gene Sequence |
Protein sequence |