AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005494


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005494.t1 MTR_1g086600 95.448 659 26 2 1 656 23 680 0.0 1289
MS.gene005494.t1 MTR_7g109830 79.573 656 134 0 1 656 1 656 0.0 1122
MS.gene005494.t1 MTR_8g099420 51.302 653 318 0 2 654 5 657 0.0 704
MS.gene005494.t1 MTR_5g009350 51.613 651 315 0 4 654 6 656 0.0 698
MS.gene005494.t1 MTR_5g009350 51.558 642 311 0 4 645 6 647 0.0 689
MS.gene005494.t1 MTR_5g009360 50.689 653 322 0 2 654 4 656 0.0 683
MS.gene005494.t1 MTR_1g034360 47.926 651 337 2 4 653 5 654 0.0 643
MS.gene005494.t1 MTR_4g068670 47.086 652 339 3 4 653 5 652 0.0 630
MS.gene005494.t1 MTR_5g009350 49.466 562 282 1 4 563 6 567 0.0 581
MS.gene005494.t1 MTR_5g009350 50.926 540 265 0 4 543 6 545 0.0 579
MS.gene005494.t1 MTR_5g009360 51.154 520 254 0 135 654 11 530 0.0 541
MS.gene005494.t1 MTR_1g104810 38.629 642 372 11 24 656 60 688 8.16e-135 412
MS.gene005494.t1 MTR_1g104810 39.303 603 349 9 59 656 31 621 6.50e-133 404
MS.gene005494.t1 MTR_1g030290 33.333 645 384 14 46 654 62 696 1.01e-102 328
MS.gene005494.t1 MTR_3g087980 31.934 667 407 13 22 652 37 692 2.98e-99 319
MS.gene005494.t1 MTR_3g082660 31.163 645 394 14 47 652 93 726 4.25e-88 290
MS.gene005494.t1 MTR_3g084450 27.628 666 398 18 46 653 81 720 1.06e-51 191
MS.gene005494.t1 MTR_3g084470 27.410 664 399 18 46 653 79 715 3.16e-48 181
MS.gene005494.t1 MTR_8g083170 26.457 669 404 19 46 653 83 724 8.19e-48 179
MS.gene005494.t1 MTR_3g084450 29.412 476 276 13 221 653 54 512 2.42e-43 163
MS.gene005494.t1 MTR_5g007640 26.482 506 274 19 78 567 98 521 3.08e-24 107
MS.gene005494.t1 MTR_1g063110 28.358 335 182 12 221 547 191 475 9.13e-24 106
MS.gene005494.t1 MTR_5g008820 22.793 487 302 13 78 549 41 468 5.13e-23 103
MS.gene005494.t1 MTR_1g063120 26.179 424 225 14 221 629 195 545 2.19e-22 102
MS.gene005494.t1 MTR_2g095510 27.841 352 181 12 221 565 186 471 1.06e-21 99.8
MS.gene005494.t1 MTR_1569s0010 24.000 600 347 23 47 608 1 529 2.22e-21 98.6
MS.gene005494.t1 MTR_2g095510 28.013 307 162 10 221 520 186 440 3.93e-21 97.4
MS.gene005494.t1 MTR_4g005750 26.230 488 269 17 78 547 54 468 1.13e-20 96.7
MS.gene005494.t1 MTR_4g057730 27.381 336 180 13 221 547 189 469 1.37e-20 95.9
MS.gene005494.t1 MTR_4g057730 27.273 352 183 13 221 565 189 474 1.52e-20 96.3
MS.gene005494.t1 MTR_4g128337 25.180 556 299 22 66 597 50 512 5.75e-20 94.4
MS.gene005494.t1 MTR_1g026310 25.826 333 193 11 220 547 204 487 2.40e-19 92.4
MS.gene005494.t1 MTR_4g057730 27.508 309 161 12 221 520 189 443 3.68e-19 91.3
MS.gene005494.t1 MTR_4g121600 22.651 596 344 18 78 640 47 558 1.04e-18 90.5
MS.gene005494.t1 MTR_3g064420 23.926 489 288 19 78 542 41 469 1.71e-18 89.7
MS.gene005494.t1 MTR_2g044180 22.619 588 354 17 78 640 47 558 1.81e-18 89.7
MS.gene005494.t1 MTR_5g008800 21.926 488 307 12 78 549 41 470 4.66e-18 88.6
MS.gene005494.t1 MTR_8g074040 22.360 483 297 13 79 542 84 507 4.81e-18 88.6
MS.gene005494.t1 MTR_1g090737 26.761 355 182 10 221 565 212 498 1.13e-17 87.4
MS.gene005494.t1 MTR_8g074120 24.842 475 264 17 103 546 19 431 1.40e-17 86.7
MS.gene005494.t1 MTR_2g044180 23.164 531 307 17 135 640 13 467 3.21e-16 82.4
MS.gene005494.t1 MTR_2g105570 35.294 170 99 8 385 547 310 475 5.69e-15 78.6
MS.gene005494.t1 MTR_8g074040 25.000 364 195 12 198 542 85 389 1.18e-14 77.4
MS.gene005494.t1 MTR_5g023730 30.137 219 132 8 414 615 329 543 1.27e-13 74.3
MS.gene005494.t1 MTR_4g077900 32.530 166 106 5 385 547 243 405 7.68e-12 68.6
MS.gene005494.t1 MTR_1g073180 30.909 165 109 5 385 547 300 461 2.48e-11 67.0
MS.gene005494.t1 MTR_1g073180 30.909 165 109 5 385 547 322 483 2.62e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005494.t1 AT2G47240 66.006 656 223 0 1 656 1 656 0.0 944
MS.gene005494.t1 AT2G47240 66.006 656 223 0 1 656 1 656 0.0 944
MS.gene005494.t1 AT2G47240 66.006 656 223 0 1 656 1 656 0.0 944
MS.gene005494.t1 AT2G47240 66.164 597 202 0 60 656 1 597 0.0 868
MS.gene005494.t1 AT4G23850 49.466 655 331 0 2 656 5 659 0.0 699
MS.gene005494.t1 AT4G11030 50.612 654 321 2 2 654 5 657 0.0 688
MS.gene005494.t1 AT1G64400 50.077 651 324 1 4 653 6 656 0.0 680
MS.gene005494.t1 AT1G49430 47.604 647 337 2 8 652 11 657 0.0 627
MS.gene005494.t1 AT1G49430 45.935 492 265 1 8 498 11 502 2.51e-158 466
MS.gene005494.t1 AT5G27600 39.297 626 363 9 36 656 78 691 3.99e-142 431
MS.gene005494.t1 AT3G05970 41.120 625 351 9 36 655 78 690 6.51e-142 430
MS.gene005494.t1 AT1G77590 32.555 642 385 14 46 652 62 690 4.09e-102 326
MS.gene005494.t1 AT2G04350 31.163 645 394 13 47 652 86 719 2.00e-91 299
MS.gene005494.t1 AT2G04350 31.163 645 394 13 47 652 86 719 2.00e-91 299
MS.gene005494.t1 AT1G77590 33.514 555 335 12 119 652 3 544 2.82e-90 291
MS.gene005494.t1 AT3G23790 26.706 674 404 20 40 653 79 722 4.16e-51 189
MS.gene005494.t1 AT4G14070 25.672 670 403 19 42 652 93 726 1.17e-47 179
MS.gene005494.t1 AT2G47245 61.290 93 36 0 3 95 36 128 1.70e-32 122
MS.gene005494.t1 AT1G66120 24.853 511 286 13 78 562 41 479 3.74e-24 107
MS.gene005494.t1 AT2G17650 25.096 522 281 15 78 565 88 533 2.93e-23 105
MS.gene005494.t1 AT1G21530 25.519 482 288 15 78 544 42 467 3.08e-23 104
MS.gene005494.t1 AT1G21530 25.311 482 287 15 78 544 42 465 5.38e-22 100
MS.gene005494.t1 AT3G16910 23.980 588 347 19 78 640 49 561 5.62e-22 100
MS.gene005494.t1 AT1G65060 26.975 519 266 23 78 573 77 505 1.19e-21 99.8
MS.gene005494.t1 AT1G20560 23.347 484 295 12 78 542 43 469 1.89e-21 99.0
MS.gene005494.t1 AT1G65060 27.253 466 241 20 78 521 77 466 2.38e-21 98.2
MS.gene005494.t1 AT1G65890 23.699 519 282 17 78 562 41 479 3.83e-21 98.2
MS.gene005494.t1 AT1G65880 23.838 495 280 15 78 542 41 468 8.62e-21 97.1
MS.gene005494.t1 AT1G51680 26.950 564 313 23 66 611 57 539 1.72e-20 95.9
MS.gene005494.t1 AT4G19010 29.167 336 178 13 221 547 205 489 1.79e-20 96.3
MS.gene005494.t1 AT1G77240 24.089 494 288 18 78 547 41 471 1.72e-19 92.8
MS.gene005494.t1 AT1G51680 27.063 521 291 22 66 565 57 509 1.82e-19 92.8
MS.gene005494.t1 AT4G05160 28.205 351 181 12 221 565 191 476 3.07e-19 92.0
MS.gene005494.t1 AT1G51680 27.200 500 278 21 66 547 57 488 4.25e-19 91.3
MS.gene005494.t1 AT1G20560 25.905 359 194 10 200 542 89 391 1.24e-17 86.7
MS.gene005494.t1 AT5G63380 27.711 332 184 13 221 547 205 485 2.18e-16 83.2
MS.gene005494.t1 AT3G21230 31.797 217 131 6 385 598 331 533 3.32e-16 82.8
MS.gene005494.t1 AT3G21230 32.547 212 126 6 385 593 331 528 4.94e-16 82.0
MS.gene005494.t1 AT3G21230 34.337 166 105 4 385 547 331 495 6.47e-15 78.2
MS.gene005494.t1 AT5G16370 32.948 173 99 8 388 547 302 470 3.58e-13 73.2
MS.gene005494.t1 AT5G16340 32.370 173 100 7 388 547 302 470 8.76e-13 71.6
MS.gene005494.t1 AT5G38120 25.238 420 239 17 221 635 200 549 4.38e-12 69.7
MS.gene005494.t1 AT5G38120 26.645 304 167 13 221 520 200 451 7.52e-12 68.6
MS.gene005494.t1 AT5G38120 26.645 304 167 13 221 520 200 451 8.43e-12 68.6
MS.gene005494.t1 AT5G38120 26.645 304 167 13 221 520 200 451 8.43e-12 68.6
MS.gene005494.t1 AT1G75960 34.615 156 87 7 402 544 314 467 8.85e-12 68.6
MS.gene005494.t1 AT1G68270 32.402 179 92 8 388 547 275 443 3.27e-11 66.6
MS.gene005494.t1 AT1G62940 26.716 408 230 16 218 606 179 536 6.51e-11 65.9

Find 139 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTAAGATTTGGGTATA+TGG 0.208667 1.1:+64302333 MS.gene005494:intron
CATAGGAGGGAATTCATTTC+TGG 0.221124 1.1:-64296510 None:intergenic
ACGAATTGATTCCATGTATA+TGG 0.245820 1.1:-64297967 None:intergenic
ATACTTACATCTTCAACTAT+TGG 0.314643 1.1:-64302219 None:intergenic
ATTACCTTTCAATCTCTTAG+AGG 0.321844 1.1:-64297778 None:intergenic
AGACCCGCTTCCATTTGATA+TGG 0.328595 1.1:+64303115 MS.gene005494:CDS
GTGGAACCATCCATCTATTA+TGG 0.334919 1.1:-64301968 None:intergenic
TTCTTCAATCTCAGAGCTTA+AGG 0.341131 1.1:-64301394 None:intergenic
TGTGTTAAAACAACACCTTT+AGG 0.342951 1.1:-64298921 None:intergenic
TATTTAAGATTTGGGTATAT+GGG 0.344059 1.1:+64302334 MS.gene005494:intron
TTGGTCGAGGGAACATAGTT+TGG 0.346788 1.1:-64302451 None:intergenic
CAACATGCTCAAGTATTATA+AGG 0.357038 1.1:+64303178 MS.gene005494:CDS
CAGTGAAGGTTGAGGAAGGA+AGG 0.365875 1.1:+64296435 MS.gene005494:CDS
GTCAAGTATTTGTCCTCCTT+TGG 0.368480 1.1:+64298851 MS.gene005494:CDS
ATAGCACATATTTCTTCAAT+TGG 0.372743 1.1:-64302470 None:intergenic
TCCTGATTTCACCTCTGCTT+GGG 0.376030 1.1:+64296535 MS.gene005494:CDS
TTATTAGCAACATCTTCATT+TGG 0.377802 1.1:-64302393 None:intergenic
ATGAAGATGTTGCTAATAAG+TGG 0.378171 1.1:+64302397 MS.gene005494:CDS
TTGTATGTCTTCCAAACATA+TGG 0.379295 1.1:-64296845 None:intergenic
CATAGATAGGACCATATGTT+TGG 0.379474 1.1:+64296834 MS.gene005494:intron
CCTAGCATGCACATTTCATC+TGG 0.398573 1.1:-64301787 None:intergenic
GAAGGATCTGAATGCGTTGC+TGG 0.399764 1.1:+64300274 MS.gene005494:intron
ACAAAAGAAGCCATAATAGA+TGG 0.412059 1.1:+64301958 MS.gene005494:CDS
GAGAGAAGGTTACGGTAAAC+AGG 0.419962 1.1:-64296488 None:intergenic
ATCCTGATTTCACCTCTGCT+TGG 0.423007 1.1:+64296534 MS.gene005494:CDS
CCAGTGAGGAGAACAGTCTT+TGG 0.427412 1.1:+64300485 MS.gene005494:CDS
TTTAACACATGAAAACGTAT+TGG 0.428986 1.1:+64298935 MS.gene005494:CDS
ATAATCCTCATAATACCATT+AGG 0.434153 1.1:-64302114 None:intergenic
CATCTGTTGGTTACTATCAC+GGG 0.436909 1.1:+64299176 MS.gene005494:CDS
TGCTTCCTAATGGTATTATG+AGG 0.438775 1.1:+64302109 MS.gene005494:CDS
TGGTTTAATTCCAGCGTTTG+TGG 0.443623 1.1:-64297947 None:intergenic
TCCCAAGCAGAGGTGAAATC+AGG 0.444690 1.1:-64296536 None:intergenic
CAGAAATGAATTCCCTCCTA+TGG 0.449905 1.1:+64296511 MS.gene005494:CDS
CGTGTTAGACTAATAATATC+TGG 0.450794 1.1:+64301363 MS.gene005494:CDS
AACGTATTGGCTTTAGTAAG+AGG 0.459025 1.1:+64298948 MS.gene005494:CDS
ATGGAATCAATTCGTACAAA+AGG 0.460579 1.1:+64297975 MS.gene005494:CDS
CGATCAAGGATGTGAGCTAA+AGG 0.462061 1.1:-64299121 None:intergenic
TCAAGATAAGAAGGTTAAAG+AGG 0.465855 1.1:+64297591 MS.gene005494:CDS
CCAAAGACTGTTCTCCTCAC+TGG 0.471510 1.1:-64300485 None:intergenic
TCTGGAAATGTAAGAGTAGT+TGG 0.472023 1.1:-64301769 None:intergenic
AAGTCTCTTTCCATATCAAA+TGG 0.472138 1.1:-64303125 None:intergenic
AGAGGATTGTAACCCATGTC+TGG 0.475731 1.1:-64301859 None:intergenic
CATGGAACAATTTGAGGACA+AGG 0.478090 1.1:+64298983 MS.gene005494:CDS
GAATAGCTTCAAGTCAATAC+TGG 0.479819 1.1:+64302356 MS.gene005494:CDS
AAAGATGAGGCCACAAACGC+TGG 0.481975 1.1:+64297937 MS.gene005494:CDS
TTCCGTAACGGTGCATCTGT+TGG 0.484448 1.1:+64299163 MS.gene005494:CDS
ATTGGAGAAATGCTTCCTAA+TGG 0.484911 1.1:+64302099 MS.gene005494:CDS
CCAGATGAAATGTGCATGCT+AGG 0.486775 1.1:+64301787 MS.gene005494:CDS
ACATCCTCAAAACCGCATGC+TGG 0.486879 1.1:+64296668 MS.gene005494:CDS
CATCCTCAAAACCGCATGCT+GGG 0.489805 1.1:+64296669 MS.gene005494:CDS
CACTGTTTGCTGGTGTACCA+CGG 0.492544 1.1:+64300321 MS.gene005494:CDS
GGATGGCGTAAAATTGTTGA+TGG 0.493101 1.1:+64296690 MS.gene005494:CDS
AGTGAAGGTTGAGGAAGGAA+GGG 0.493768 1.1:+64296436 MS.gene005494:CDS
GCATCTGTTGGTTACTATCA+CGG 0.494616 1.1:+64299175 MS.gene005494:CDS
TTAAAGCCAACACTGTTTGC+TGG 0.495412 1.1:+64300311 MS.gene005494:CDS
CTCAAAACCGCATGCTGGGA+TGG 0.496069 1.1:+64296673 MS.gene005494:CDS
AATCTTGTTAAGCTTTCTCA+AGG 0.500570 1.1:+64302150 MS.gene005494:CDS
TAATGAAGTGAAGCCCACTA+TGG 0.502558 1.1:-64297902 None:intergenic
CATATTTCTTCAATTGGTCG+AGG 0.507382 1.1:-64302464 None:intergenic
ATTCTTCAATACAACGATCA+AGG 0.508652 1.1:-64299135 None:intergenic
CATTTCTGGAGAGAAGGTTA+CGG 0.511492 1.1:-64296496 None:intergenic
GCGTAAAATTGTTGATGGAA+AGG 0.513370 1.1:+64296695 MS.gene005494:CDS
CAAGGTCCTTACCATAGCCT+TGG 0.519011 1.1:-64301449 None:intergenic
AAGGTTGAGGAAGGAAGGGA+AGG 0.520875 1.1:+64296440 MS.gene005494:CDS
GACATGGGTTACAATCCTCT+TGG 0.525689 1.1:+64301862 MS.gene005494:CDS
GTATTATGAGGATTATTGAC+AGG 0.526644 1.1:+64302121 MS.gene005494:CDS
CCTCTATGAAATTAGTTGAA+GGG 0.527464 1.1:+64303065 MS.gene005494:intron
CTGGAATTAAACCATATACA+TGG 0.532708 1.1:+64297956 MS.gene005494:CDS
GGAATTCATTTCTGGAGAGA+AGG 0.533444 1.1:-64296502 None:intergenic
AATAAGTGGGCATATGCAAA+TGG 0.534338 1.1:+64302411 MS.gene005494:CDS
GTATATATCCTAGGGGACAT+TGG 0.534838 1.1:+64302081 MS.gene005494:intron
AAGGAGGACAAATACTTGAC+GGG 0.536225 1.1:-64298848 None:intergenic
TGTATTCAATGAATTGCGGC+TGG 0.537145 1.1:+64301828 MS.gene005494:CDS
GATCAAGGATGTGAGCTAAA+GGG 0.537448 1.1:-64299120 None:intergenic
AACCAACAGATGCACCGTTA+CGG 0.537936 1.1:-64299165 None:intergenic
GAGGTGAAATCAGGATCCAT+AGG 0.539078 1.1:-64296527 None:intergenic
ATTTGATATGGAAAGAGACT+TGG 0.545381 1.1:+64303127 MS.gene005494:CDS
ACTGTTTGCTGGTGTACCAC+GGG 0.547054 1.1:+64300322 MS.gene005494:CDS
GCCTTTGTATGCCAAGGCTA+TGG 0.547652 1.1:+64301438 MS.gene005494:CDS
GGCTACACTTACAGCCATAG+TGG 0.547898 1.1:+64297888 MS.gene005494:intron
AAGGGATTTGAACATATCAA+AGG 0.551479 1.1:+64303083 MS.gene005494:CDS
ATTGGCTTTAGTAAGAGGAA+TGG 0.559105 1.1:+64298953 MS.gene005494:CDS
AAAGGAGGACAAATACTTGA+CGG 0.560929 1.1:-64298849 None:intergenic
TGCACAATAATGTATACAAG+TGG 0.561176 1.1:+64298885 MS.gene005494:CDS
TTTCCATATCAAATGGAAGC+GGG 0.571957 1.1:-64303118 None:intergenic
ATGTATACAAGTGGAACTAG+TGG 0.575171 1.1:+64298894 MS.gene005494:CDS
TCCACAATGGATTATCGCAA+TGG 0.583541 1.1:+64297267 MS.gene005494:CDS
ACTTGTGCCTTTGTATGCCA+AGG 0.583881 1.1:+64301432 MS.gene005494:CDS
AAATCCTCTAAGAGATTGAA+AGG 0.590421 1.1:+64297774 MS.gene005494:CDS
GTGAAATCAGGATCCATAGG+AGG 0.591865 1.1:-64296524 None:intergenic
AGATCTTCTAGCCTTCAGAA+AGG 0.595184 1.1:+64301151 MS.gene005494:CDS
TGAAGATGTTGCTAATAAGT+GGG 0.599300 1.1:+64302398 MS.gene005494:CDS
ACCATAGCCTTGGCATACAA+AGG 0.601421 1.1:-64301439 None:intergenic
AAGAAGCCATAATAGATGGA+TGG 0.604745 1.1:+64301962 MS.gene005494:CDS
ATATTTCTTCAATTGGTCGA+GGG 0.606785 1.1:-64302463 None:intergenic
CATTAGGTTAAAGCAAGGCT+AGG 0.612184 1.1:+64301336 MS.gene005494:intron
CACACCATTAGGTTAAAGCA+AGG 0.612761 1.1:+64301331 MS.gene005494:intron
GATGTGAGCTAAAGGGAGGA+AGG 0.614011 1.1:-64299113 None:intergenic
GTGCATATGTCATGAGCCAA+AGG 0.615739 1.1:-64298867 None:intergenic
ATGTGCATGCTAGGCAATGT+TGG 0.618977 1.1:+64301796 MS.gene005494:CDS
GCTTCTGCTTTAAAAGCATG+TGG 0.622653 1.1:+64296896 MS.gene005494:CDS
GACAGACACAACCTTTCTGA+AGG 0.623817 1.1:-64301162 None:intergenic
CTTTCCATATCAAATGGAAG+CGG 0.623939 1.1:-64303119 None:intergenic
ATCTACAGCTGTGAGAAACA+AGG 0.630405 1.1:+64302503 MS.gene005494:CDS
GGAACTAGTGGAGATCCTAA+AGG 0.633228 1.1:+64298906 MS.gene005494:CDS
TAACTGTATTCAATGAATTG+CGG 0.635370 1.1:+64301824 MS.gene005494:CDS
CCTGAAAATATCCCAAGCAG+AGG 0.639200 1.1:-64296546 None:intergenic
ACAATGGATTATCGCAATGG+AGG 0.642131 1.1:+64297270 MS.gene005494:CDS
GGGCTTCACTTCATTAACTG+AGG 0.642336 1.1:+64297909 MS.gene005494:CDS
AAACTTGGTTGGATGAACAA+AGG 0.643154 1.1:+64301098 MS.gene005494:CDS
CTGACACATATCTCACCACA+TGG 0.645144 1.1:-64301892 None:intergenic
TAGGTTAAAGCAAGGCTAGG+TGG 0.646689 1.1:+64301339 MS.gene005494:intron
AACTGAGGAAGAGAAAGATG+AGG 0.647032 1.1:+64297924 MS.gene005494:CDS
GCTGGAGGAAGTTCCAGACA+TGG 0.647892 1.1:+64301846 MS.gene005494:CDS
GGTACACCAGCAAACAGTGT+TGG 0.650079 1.1:-64300317 None:intergenic
TCCATTGCGATAATCCATTG+TGG 0.654182 1.1:-64297268 None:intergenic
TGAAATCAGGATCCATAGGA+GGG 0.655083 1.1:-64296523 None:intergenic
TTACCAAGTGTGTCATAGAG+AGG 0.657682 1.1:-64297431 None:intergenic
ATATGTTTGGAAGACATACA+AGG 0.657772 1.1:+64296847 MS.gene005494:CDS
GCTACACTTACAGCCATAGT+GGG 0.658633 1.1:+64297889 MS.gene005494:intron
CTGGAGGAAGTTCCAGACAT+GGG 0.659695 1.1:+64301847 MS.gene005494:CDS
TTCAGGTATCAAGAAAGCAG+TGG 0.659983 1.1:+64300451 MS.gene005494:intron
ATGGATCTAACTGTCCACAA+TGG 0.660741 1.1:+64297254 MS.gene005494:CDS
ATTCAATGAATTGCGGCTGG+AGG 0.661838 1.1:+64301831 MS.gene005494:CDS
CATATGTCATGAGCCAAAGG+AGG 0.664582 1.1:-64298864 None:intergenic
GTGCCTCTCTATGACACACT+TGG 0.668273 1.1:+64297428 MS.gene005494:CDS
TTACTTTGTGTAGATGACTG+TGG 0.670138 1.1:+64299075 MS.gene005494:intron
CCAGGTTTGACAGAAACATG+TGG 0.679060 1.1:+64301745 MS.gene005494:intron
GGATCTGAATGCGTTGCTGG+AGG 0.681374 1.1:+64300277 MS.gene005494:intron
CAAGGATGTGAGCTAAAGGG+AGG 0.681394 1.1:-64299117 None:intergenic
GAAGAGAAAATCAACCTGTG+TGG 0.682894 1.1:-64301987 None:intergenic
ATCTGTTGGTTACTATCACG+GGG 0.686386 1.1:+64299177 MS.gene005494:CDS
CCTCTTGGAACTCCTCCATG+TGG 0.694715 1.1:+64301877 MS.gene005494:CDS
ATAGATGGATGGTTCCACAC+AGG 0.705801 1.1:+64301973 MS.gene005494:CDS
GTTAGACTAATAATATCTGG+AGG 0.707528 1.1:+64301366 MS.gene005494:CDS
TGTGGTGAGATATGTGTCAG+AGG 0.711445 1.1:+64301895 MS.gene005494:CDS
CCACATGGAGGAGTTCCAAG+AGG 0.716589 1.1:-64301877 None:intergenic
ACACATATCTCACCACATGG+AGG 0.748292 1.1:-64301889 None:intergenic
TGGCACAACTAAATCCAGTG+AGG 0.766617 1.1:+64300471 MS.gene005494:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr1.1 gene 64296422 64303435 64296422 ID=MS.gene005494
chr1.1 mRNA 64296422 64303435 64296422 ID=MS.gene005494.t1;Parent=MS.gene005494
chr1.1 exon 64296422 64296567 64296422 ID=MS.gene005494.t1.exon1;Parent=MS.gene005494.t1
chr1.1 CDS 64296422 64296567 64296422 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64296653 64296716 64296653 ID=MS.gene005494.t1.exon2;Parent=MS.gene005494.t1
chr1.1 CDS 64296653 64296716 64296653 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64296839 64296928 64296839 ID=MS.gene005494.t1.exon3;Parent=MS.gene005494.t1
chr1.1 CDS 64296839 64296928 64296839 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64297235 64297291 64297235 ID=MS.gene005494.t1.exon4;Parent=MS.gene005494.t1
chr1.1 CDS 64297235 64297291 64297235 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64297401 64297449 64297401 ID=MS.gene005494.t1.exon5;Parent=MS.gene005494.t1
chr1.1 CDS 64297401 64297449 64297401 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64297536 64297612 64297536 ID=MS.gene005494.t1.exon6;Parent=MS.gene005494.t1
chr1.1 CDS 64297536 64297612 64297536 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64297756 64297795 64297756 ID=MS.gene005494.t1.exon7;Parent=MS.gene005494.t1
chr1.1 CDS 64297756 64297795 64297756 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64297902 64297996 64297902 ID=MS.gene005494.t1.exon8;Parent=MS.gene005494.t1
chr1.1 CDS 64297902 64297996 64297902 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64298837 64299004 64298837 ID=MS.gene005494.t1.exon9;Parent=MS.gene005494.t1
chr1.1 CDS 64298837 64299004 64298837 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64299088 64299198 64299088 ID=MS.gene005494.t1.exon10;Parent=MS.gene005494.t1
chr1.1 CDS 64299088 64299198 64299088 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64300278 64300365 64300278 ID=MS.gene005494.t1.exon11;Parent=MS.gene005494.t1
chr1.1 CDS 64300278 64300365 64300278 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64300456 64300522 64300456 ID=MS.gene005494.t1.exon12;Parent=MS.gene005494.t1
chr1.1 CDS 64300456 64300522 64300456 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64301097 64301172 64301097 ID=MS.gene005494.t1.exon13;Parent=MS.gene005494.t1
chr1.1 CDS 64301097 64301172 64301097 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64301342 64301459 64301342 ID=MS.gene005494.t1.exon14;Parent=MS.gene005494.t1
chr1.1 CDS 64301342 64301459 64301342 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64301749 64301994 64301749 ID=MS.gene005494.t1.exon15;Parent=MS.gene005494.t1
chr1.1 CDS 64301749 64301994 64301749 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64302094 64302233 64302094 ID=MS.gene005494.t1.exon16;Parent=MS.gene005494.t1
chr1.1 CDS 64302094 64302233 64302094 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64302342 64302524 64302342 ID=MS.gene005494.t1.exon17;Parent=MS.gene005494.t1
chr1.1 CDS 64302342 64302524 64302342 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64303080 64303199 64303080 ID=MS.gene005494.t1.exon18;Parent=MS.gene005494.t1
chr1.1 CDS 64303080 64303199 64303080 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
chr1.1 exon 64303400 64303435 64303400 ID=MS.gene005494.t1.exon19;Parent=MS.gene005494.t1
chr1.1 CDS 64303400 64303435 64303400 ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1
Gene Sequence

>MS.gene005494

ATGAAGAGCTTTTCAGTGAAGGTTGAGGAAGGAAGGGAAGGAAAAAATGGCATGCTTTCTGTTGGTCCTGTTTACCGTAACCTTCTCTCCAGAAATGAATTCCCTCCTATGGATCCTGATTTCACCTCTGCTTGGGATATTTTCAGGTATTTCATTTCACTTTTTATAAGGTTTGGTGATTTATCAATGCATGGTATTTATTTTTGAATGATTTATCTTAAATAATTGCAGTACGTCTGTCAAAAAACATCCTCAAAACCGCATGCTGGGATGGCGTAAAATTGTTGATGGAAAGGTTCATCTTAATTAATTAATTTATTTTTTAATTTTTAGTGTTATGTAACTTAGGATATGTATTTGTCAAAGAGACGAGACAAGGTAATTGTTTCTTGTTTTGTTTTTGGTTTATGTTCATAGATAGGACCATATGTTTGGAAGACATACAAGGAAGCTTATGATGAAGTTTTACAAATTGCTTCTGCTTTAAAAGCATGTGGTGCTAAATCTGTAAGTGGTTGCAAAAAGTGCTTCACTCATAATGTTTGATTTGAGTTGTGTGCAATCATAATCGTGTGCCGTGTGACTGCATGCATTCAACCACACTGATAATTGTTCAATCAAGATCAGACGGTCCAAATTTCGTATTCGTATTTTAGATTGTAAATCTAGACGGTCCGTATCTTAATCAAATGGTCATCAATGTGGTTGCCTCGCTAAATTGTGACTCCATGTCTATTTACATTATAGTAGATAATAAGTAGTTTCTCTTCCAATGAAATCTTCTCAATGTCTATTATTGATGGTCTTATATAGGGTTCAAAAATTGGAATTTATGGATCTAACTGTCCACAATGGATTATCGCAATGGAGGTTTGTCACTTCTATTAAATCATTGCTTTCTTAAACATTTCTCTATTAATTGTTTCTTTTATAAATGTCATCAAAATTCATAATCATGTTGTTTATAATATTGGCATAGGCTTGTTCTGCACAAAACTTCATTTGTGTGCCTCTCTATGACACACTTGGTAAGTTCTTAGTTCTTACTACAATTGAAATTTCTTCTCTTTAACTTATGGTTCACAATTTTCCTGATTAAGTGCTTTTGATGCAGGTTCTGGTGCTATAAATTTTATCATAGATCATGCAGAAATAGATTATGTTTTTGTTCAAGATAAGAAGGTTAAAGAGGTAATTAAGCATAAAAATTACTTTATTTTTCCTTGATACAAATATTTATTAATGTTAGTTGTATTTCTAAATGAGTTTATATAACATAGATTCAAAGCAGCAATTAATTTTAAGTACTGACCAAAAACATATATTGTCTGCAGCTTTTGAATGCTGACTGTAAATCCTCTAAGAGATTGAAAGGTAATTTACTAAGTTTCAATTTCAATATTGATATGCTCCAGCTAACGATTGAAGGCATTTATGTATGTTATCTAAGTTTGGTTGTTGTATGTGGCTACACTTACAGCCATAGTGGGCTTCACTTCATTAACTGAGGAAGAGAAAGATGAGGCCACAAACGCTGGAATTAAACCATATACATGGAATCAATTCGTACAAAAGGTAGGTGTATGATATTTAAGGAATTTACTATCATTTAATTTATTGAATGATTTATGTTTCAACTTCTTTTTTATATTAGCTATTTGGAAAAATTGAAAAATAAAATAATCCAACCTGAAAGGAGTGGTATAGGGGAAAATGAATTGTCTACAATTGAGATTTCTCTGGATTAAGTTCATAAAATATGCATTTTTTTTTAATTCACAATATAGTGCCTGAAATTTATGCGATCAATGATGTTTAAGGGTATCGCAACTGTAGGGAATCTTGATCCACAATAAGGGAGTGTAACTTTATATATTTGAAATTAAAGTGATACATACATACCTTCAATCAAATCATGCAAGTTATTATTCTATTCTTTAAAAGTTTGTATGACCCCTGAAGTTGACAAAATTAAAATGACACGTACCTTCAATTTAATTTTAGAGCAATGCTATATATCTAGAAAAAAAACATCAAGAATTCTTCAAGAATAAAGAGCAACCAATCACAATGCACTATTTGCCACAATTCAAGGAGGTGTGGCTGAAAAATAGGAAGTGAGCAAATAAATCATGCAATTAAAACTTGCCACATGTGTCTTGAAAAATTCTTGATGCTATTTTTCTAGATAAATAGCATTTTCCTTAATTTCAATCTTCAATCTAATCATGCACTCCATTAGTCTATTTGGAGTGAGGTAAACGTAATTTCTTCTTTCGCACATACTCTTTAATCCAGGAGATCTTAGAATTTACTTTGCACTGACCTTATCAAAAGAAGAAATGTCCAAACATGCATTATAATGTTTCTTCTATTTCTCTATCATTATGATTAATACGAAACATACCTTAACAGGGAAAAGAAAACCCGTCAAGTATTTGTCCTCCTTTGGCTCATGACATATGCACAATAATGTATACAAGTGGAACTAGTGGAGATCCTAAAGGTGTTGTTTTAACACATGAAAACGTATTGGCTTTAGTAAGAGGAATGGATCTTTTCATGGAACAATTTGAGGACAAGGTAACCTAATCTTTAATTCATAAGCTGATCCAGTGACAAATATTGAAATTAACTATATGTAACACGTATTTTACTTTGTGTAGATGACTGTGGATGATGTGTATTTATCCTTCCTCCCTTTAGCTCACATCCTTGATCGTTGTATTGAAGAATATTTTTTCCGTAACGGTGCATCTGTTGGTTACTATCACGGGGTATATTCGTCATCTAATCTCATTAATGTCATGACACGTTATAACGTAGGAGTACTTGTAGAAAGATAGACGGCATGTTAGCCTATTTATTGATCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGTTCTATATATTTTATTATATAATATATGTTTTAATTTAATTTATATGATCATTTCAATTTAAATTATCTTTACTGTCTAAATTTTAGTTTTAATATTCATTATGTATTTGAGTCAAAATAATGTTCAGCATGTTTATAAATTTACATTTAAATTTGAAAAAAAAAAATGTTTTGAAAGAAAATTTGTAAAAGAAATATCTAACGTGGTCATTATTTTTCGAGTTCCACTTAAATACTGTGTGTAGATTTTAAATTAAAAAAAATTAGTTGTTAATATAACTTTTAACACAAATATATATTATTGCATGTCACCACAAAAAAAACAAATATTATTGCATGTGTGATGTGTCATTCTCCTTAAAAAACATTTTGTGAAGAATAATGAGAAGATAGGGAGATAAAGTGTTTACGTAATCTTATTTATAGAACTTTTTGTAAGAAAATGTCTTTCTTCAATATGACTCATATAAATACAAAATAGGGACAGACTACAAAGGCGAAAGTTGAGCTAGAGCGTTGTAAAGCCCCTCTTTACCCCTTACGTATTGAGAATTGCTCATCTCTTATATGTTTTTGCTCATTTCCATTCTATGTGAATTAACTCACACTGAAAAACACATCTACGTAAGTTAACTCATGTTAAAAATACACATGTGTAAACTAACTCACGATCAGCTATTTGACGGAAATGAGCAAAAACGGATAGAAGAAGAGCACAATGTTGTTGAGGGGGACGGTAGGCCCCCGTGGTGCGGTCCAGGGATATTAATATATTAATAGAACCAGCTACACTAACTTAATAGAGAAAATAACTCCTAACTACTTCTAACTAACTTAATATTCGGTAAGTGAGTTAAAAATCTTGAAATTTATGGAATGATTTGCATGAAGGATCTGAATGCGTTGCTGGAGGATTTAAGTGAGTTAAAGCCAACACTGTTTGCTGGTGTACCACGGGTTTTTGAAAAAGTTTATGAAGGCAAGGTCACGCTACAATATAAAATTTATTGTTTTTAATAATTGATTTTATTAGGAAAATAACTTTACAATTAAATGAATTTTGTTTCAGGTATCAAGAAAGCAGTGGCACAACTAAATCCAGTGAGGAGAACAGTCTTTGGCATGCTCTACAACTAGTAAGGGTGGCTATTCTATTGCCTATATTTATTTCTAACTTTAAAAAAAATGGAGAATTATTTTGGATTAAATATAATTTTCATTTCATTACAATTATTAAATTTCTTATTTCAGTTTCTATAAAAAAAAAATTGTAGCAATTTTTTCCCCATTAATTAATTAACCCAACAAATATAAACGAATAGAATTGAAATAAAAATATACTCCCTTGTTTCAAAATGAGTGTCACTTTAGCCAAAAAAATTGTTTCAAAATGAATGTCACTTTACATTTCCAATACAACTTCAATTTTTTTCTTCCAATTTACCCTCAATAAATACTCCAACTTTTCTCCCACACAATTTTCAATGCAACTTTAATTTTGTATTTTTCTTATAAAGTAAGGGCAGTTTAGTAAAAACGTTATATCCAATGATTATTTCATTCTATTTCTTAATCTGTGTGCCAAAGCCTAAAACGACACTCATTTTGAAACGGAGGGAGTATTAAAATTATGGATTTCTTTATGAGGTTGTTTGGTGATTAACATCTTTTTTTTCCCCATTAATAAATCCTATTTTGTGTTTTATACAGTAAACTTGGTTGGATGAACAAAGGATACAAACAGAGAGAAGCATCACGTCTTGCAGATCTTCTAGCCTTCAGAAAGGTTGTGTCTGTCGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCTTCTCTTGAATGTACTAGTAATCTTTCGGACCAATTTCTGAACCTTCTCCTTAACACACCATTAGGTTAAAGCAAGGCTAGGTGGACGTGTTAGACTAATAATATCTGGAGGTGCAGCCTTAAGCTCTGAGATTGAAGAATTCTTGCGTGTCACTACTTGTGCCTTTGTATGCCAAGGCTATGGTAAGGACCTTGGAAGTTGGAACTATCTCAAAAATTGAAAGTTTTTTTTTTGTCACATCTGTCCTTTTTAGTTGGTCCATCGAGTCATTAAAAGTATATTAGAGGACAAATATGATCTATGATTTATAATTTAAAGAATCATTCTGAAATTTAATTAATTTTAGAGGCTAAATTGATAATTAACTATAATATTGTTATGACATATTCCAACTTAACTTAATTTGGACCAAATACTTACATGTACTTTTTACAATACAATGATACACTGACATTAAGGTTAATATTCCAGGTTTGACAGAAACATGTGGACCAACTACTCTTACATTTCCAGATGAAATGTGCATGCTAGGCAATGTTGGTGTTGTAACTGTATTCAATGAATTGCGGCTGGAGGAAGTTCCAGACATGGGTTACAATCCTCTTGGAACTCCTCCATGTGGTGAGATATGTGTCAGAGGCAAAAGTGTTTTCACTGGTTACCATAAAAATCCTGAGTTAACAAAAGAAGCCATAATAGATGGATGGTTCCACACAGGTTGATTTTCTCTTCTCCTGCCTCAAAATATTTCTATTATTTTCTTCTTTGTATGATCTAATGCGATTGTGTTGTGTCATTGTTTGGTATATATCCTAGGGGACATTGGAGAAATGCTTCCTAATGGTATTATGAGGATTATTGACAGGAAGAAGAATCTTGTTAAGCTTTCTCAAGGAGAGTATATAGCACTTGAGTATCTTGAAAATGTTTATACAATCACTCCAATAGTTGAAGATGTAAGTATTTATTTTCACAAGTTCAGTGAACACTTTCTGGTTTTTAGACACTTTTGTCTTCGAGAGTTTTTATTTATTTCATTTTCGTATGTATGTTTTTTATTTAAGATTTGGGTATATGGGAATAGCTTCAAGTCAATACTGGTTGCAGTAGTAGTTCCAAATGAAGATGTTGCTAATAAGTGGGCATATGCAAATGGTCACATATCTTCTTTCTCCAAACTATGTTCCCTCGACCAATTGAAGAAATATGTGCTATCTGAGCTCAAATCTACAGCTGTGAGAAACAAGGTAACACATAGGATAAAGATTAAATGTCTTTTTAGTCTCTATAAATAAATTCACAATTTTTAAGTTAGCCCATGCATAAATTTTGTTCAATTTTAGTCATTATTTTGTTTTTGAAGGCATTAAATGCAGGAACAACAAGTAATATTTTTTTTTTGTTTTTTTTTTGTTGCAAAAACTAATAAAAGTGGAGACTAAAATTTCTATAGGGATCAAACATAAAAAAAAATGTAATTTACTACAAATATATTTAACTCTTAGGATAATAAAAAGTAAATTGAGTAGTGACTCTGTGATTATTTCTCTACCACTATATTGAGTATATTTCTGTATCTAGTGTTATGTGGTAAATCCTGTTACATTAAAATTTTCTTTAGGTATGAACAAAGAAACTTTAAGTTCTTTTTTTTTTTTCAAAGATTTTCAAACCATGCACTATTGATGAAATGATAGACAAAAACGTTAAAAACTTTGATTTTGCAAATTTGTACTACCAAGTTTGGTATGAATCTCAACTGTTTTGTTTCCTTTTCATTTTTTCTGCCTCTATGAAATTAGTTGAAGGGATTTGAACATATCAAAGGCGTAATATTAGACCCGCTTCCATTTGATATGGAAAGAGACTTGGTAACTGCAACATTGAAAAAGAAAAGGAACAACATGCTCAAGTATTATAAGGTATTTGATATTCTCTTTCTTTTCCCTTACTAAGATGTTGTCTTTTTATAATTAGATTAGATATGTATCTTATGTTAAAGAGGGGAGTAATAAGGTTGATATTGGGTTCGATTCTCACCTCGAACAAATAGTAACAAATTACAAATTTAAAAAGAAAGATATATGTTTATGTGCTCACAAATTTGTTGACATTGTAACAGGTTGAGATAGACGAACTATACAAAAGTTTGACTTGA

Protein sequence

>MS.gene005494.t1

MKSFSVKVEEGREGKNGMLSVGPVYRNLLSRNEFPPMDPDFTSAWDIFSTSVKKHPQNRMLGWRKIVDGKIGPYVWKTYKEAYDEVLQIASALKACGAKSGSKIGIYGSNCPQWIIAMEACSAQNFICVPLYDTLGSGAINFIIDHAEIDYVFVQDKKVKELLNADCKSSKRLKAIVGFTSLTEEEKDEATNAGIKPYTWNQFVQKGKENPSSICPPLAHDICTIMYTSGTSGDPKGVVLTHENVLALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRCIEEYFFRNGASVGYYHGDLNALLEDLSELKPTLFAGVPRVFEKVYEGIKKAVAQLNPVRRTVFGMLYNYKLGWMNKGYKQREASRLADLLAFRKVKARLGGRVRLIISGGAALSSEIEEFLRVTTCAFVCQGYGLTETCGPTTLTFPDEMCMLGNVGVVTVFNELRLEEVPDMGYNPLGTPPCGEICVRGKSVFTGYHKNPELTKEAIIDGWFHTGDIGEMLPNGIMRIIDRKKNLVKLSQGEYIALEYLENVYTITPIVEDIWVYGNSFKSILVAVVVPNEDVANKWAYANGHISSFSKLCSLDQLKKYVLSELKSTAVRNKLKGFEHIKGVILDPLPFDMERDLVTATLKKKRNNMLKYYKVEIDELYKSLT