Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005494.t1 | RHN81006.1 | 98.8 | 657 | 7 | 1 | 1 | 656 | 1 | 657 | 0.00E+00 | 1329.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005494.t1 | O22898 | 66.1 | 655 | 222 | 0 | 1 | 655 | 1 | 655 | 5.3e-273 | 941.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005494.t1 | A0A396JRT1 | 98.8 | 657 | 7 | 1 | 1 | 656 | 1 | 657 | 0.0e+00 | 1329.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005494.t1 | MTR_1g086600 | 95.448 | 659 | 26 | 2 | 1 | 656 | 23 | 680 | 0.0 | 1289 |
MS.gene005494.t1 | MTR_7g109830 | 79.573 | 656 | 134 | 0 | 1 | 656 | 1 | 656 | 0.0 | 1122 |
MS.gene005494.t1 | MTR_8g099420 | 51.302 | 653 | 318 | 0 | 2 | 654 | 5 | 657 | 0.0 | 704 |
MS.gene005494.t1 | MTR_5g009350 | 51.613 | 651 | 315 | 0 | 4 | 654 | 6 | 656 | 0.0 | 698 |
MS.gene005494.t1 | MTR_5g009350 | 51.558 | 642 | 311 | 0 | 4 | 645 | 6 | 647 | 0.0 | 689 |
MS.gene005494.t1 | MTR_5g009360 | 50.689 | 653 | 322 | 0 | 2 | 654 | 4 | 656 | 0.0 | 683 |
MS.gene005494.t1 | MTR_1g034360 | 47.926 | 651 | 337 | 2 | 4 | 653 | 5 | 654 | 0.0 | 643 |
MS.gene005494.t1 | MTR_4g068670 | 47.086 | 652 | 339 | 3 | 4 | 653 | 5 | 652 | 0.0 | 630 |
MS.gene005494.t1 | MTR_5g009350 | 49.466 | 562 | 282 | 1 | 4 | 563 | 6 | 567 | 0.0 | 581 |
MS.gene005494.t1 | MTR_5g009350 | 50.926 | 540 | 265 | 0 | 4 | 543 | 6 | 545 | 0.0 | 579 |
MS.gene005494.t1 | MTR_5g009360 | 51.154 | 520 | 254 | 0 | 135 | 654 | 11 | 530 | 0.0 | 541 |
MS.gene005494.t1 | MTR_1g104810 | 38.629 | 642 | 372 | 11 | 24 | 656 | 60 | 688 | 8.16e-135 | 412 |
MS.gene005494.t1 | MTR_1g104810 | 39.303 | 603 | 349 | 9 | 59 | 656 | 31 | 621 | 6.50e-133 | 404 |
MS.gene005494.t1 | MTR_1g030290 | 33.333 | 645 | 384 | 14 | 46 | 654 | 62 | 696 | 1.01e-102 | 328 |
MS.gene005494.t1 | MTR_3g087980 | 31.934 | 667 | 407 | 13 | 22 | 652 | 37 | 692 | 2.98e-99 | 319 |
MS.gene005494.t1 | MTR_3g082660 | 31.163 | 645 | 394 | 14 | 47 | 652 | 93 | 726 | 4.25e-88 | 290 |
MS.gene005494.t1 | MTR_3g084450 | 27.628 | 666 | 398 | 18 | 46 | 653 | 81 | 720 | 1.06e-51 | 191 |
MS.gene005494.t1 | MTR_3g084470 | 27.410 | 664 | 399 | 18 | 46 | 653 | 79 | 715 | 3.16e-48 | 181 |
MS.gene005494.t1 | MTR_8g083170 | 26.457 | 669 | 404 | 19 | 46 | 653 | 83 | 724 | 8.19e-48 | 179 |
MS.gene005494.t1 | MTR_3g084450 | 29.412 | 476 | 276 | 13 | 221 | 653 | 54 | 512 | 2.42e-43 | 163 |
MS.gene005494.t1 | MTR_5g007640 | 26.482 | 506 | 274 | 19 | 78 | 567 | 98 | 521 | 3.08e-24 | 107 |
MS.gene005494.t1 | MTR_1g063110 | 28.358 | 335 | 182 | 12 | 221 | 547 | 191 | 475 | 9.13e-24 | 106 |
MS.gene005494.t1 | MTR_5g008820 | 22.793 | 487 | 302 | 13 | 78 | 549 | 41 | 468 | 5.13e-23 | 103 |
MS.gene005494.t1 | MTR_1g063120 | 26.179 | 424 | 225 | 14 | 221 | 629 | 195 | 545 | 2.19e-22 | 102 |
MS.gene005494.t1 | MTR_2g095510 | 27.841 | 352 | 181 | 12 | 221 | 565 | 186 | 471 | 1.06e-21 | 99.8 |
MS.gene005494.t1 | MTR_1569s0010 | 24.000 | 600 | 347 | 23 | 47 | 608 | 1 | 529 | 2.22e-21 | 98.6 |
MS.gene005494.t1 | MTR_2g095510 | 28.013 | 307 | 162 | 10 | 221 | 520 | 186 | 440 | 3.93e-21 | 97.4 |
MS.gene005494.t1 | MTR_4g005750 | 26.230 | 488 | 269 | 17 | 78 | 547 | 54 | 468 | 1.13e-20 | 96.7 |
MS.gene005494.t1 | MTR_4g057730 | 27.381 | 336 | 180 | 13 | 221 | 547 | 189 | 469 | 1.37e-20 | 95.9 |
MS.gene005494.t1 | MTR_4g057730 | 27.273 | 352 | 183 | 13 | 221 | 565 | 189 | 474 | 1.52e-20 | 96.3 |
MS.gene005494.t1 | MTR_4g128337 | 25.180 | 556 | 299 | 22 | 66 | 597 | 50 | 512 | 5.75e-20 | 94.4 |
MS.gene005494.t1 | MTR_1g026310 | 25.826 | 333 | 193 | 11 | 220 | 547 | 204 | 487 | 2.40e-19 | 92.4 |
MS.gene005494.t1 | MTR_4g057730 | 27.508 | 309 | 161 | 12 | 221 | 520 | 189 | 443 | 3.68e-19 | 91.3 |
MS.gene005494.t1 | MTR_4g121600 | 22.651 | 596 | 344 | 18 | 78 | 640 | 47 | 558 | 1.04e-18 | 90.5 |
MS.gene005494.t1 | MTR_3g064420 | 23.926 | 489 | 288 | 19 | 78 | 542 | 41 | 469 | 1.71e-18 | 89.7 |
MS.gene005494.t1 | MTR_2g044180 | 22.619 | 588 | 354 | 17 | 78 | 640 | 47 | 558 | 1.81e-18 | 89.7 |
MS.gene005494.t1 | MTR_5g008800 | 21.926 | 488 | 307 | 12 | 78 | 549 | 41 | 470 | 4.66e-18 | 88.6 |
MS.gene005494.t1 | MTR_8g074040 | 22.360 | 483 | 297 | 13 | 79 | 542 | 84 | 507 | 4.81e-18 | 88.6 |
MS.gene005494.t1 | MTR_1g090737 | 26.761 | 355 | 182 | 10 | 221 | 565 | 212 | 498 | 1.13e-17 | 87.4 |
MS.gene005494.t1 | MTR_8g074120 | 24.842 | 475 | 264 | 17 | 103 | 546 | 19 | 431 | 1.40e-17 | 86.7 |
MS.gene005494.t1 | MTR_2g044180 | 23.164 | 531 | 307 | 17 | 135 | 640 | 13 | 467 | 3.21e-16 | 82.4 |
MS.gene005494.t1 | MTR_2g105570 | 35.294 | 170 | 99 | 8 | 385 | 547 | 310 | 475 | 5.69e-15 | 78.6 |
MS.gene005494.t1 | MTR_8g074040 | 25.000 | 364 | 195 | 12 | 198 | 542 | 85 | 389 | 1.18e-14 | 77.4 |
MS.gene005494.t1 | MTR_5g023730 | 30.137 | 219 | 132 | 8 | 414 | 615 | 329 | 543 | 1.27e-13 | 74.3 |
MS.gene005494.t1 | MTR_4g077900 | 32.530 | 166 | 106 | 5 | 385 | 547 | 243 | 405 | 7.68e-12 | 68.6 |
MS.gene005494.t1 | MTR_1g073180 | 30.909 | 165 | 109 | 5 | 385 | 547 | 300 | 461 | 2.48e-11 | 67.0 |
MS.gene005494.t1 | MTR_1g073180 | 30.909 | 165 | 109 | 5 | 385 | 547 | 322 | 483 | 2.62e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005494.t1 | AT2G47240 | 66.006 | 656 | 223 | 0 | 1 | 656 | 1 | 656 | 0.0 | 944 |
MS.gene005494.t1 | AT2G47240 | 66.006 | 656 | 223 | 0 | 1 | 656 | 1 | 656 | 0.0 | 944 |
MS.gene005494.t1 | AT2G47240 | 66.006 | 656 | 223 | 0 | 1 | 656 | 1 | 656 | 0.0 | 944 |
MS.gene005494.t1 | AT2G47240 | 66.164 | 597 | 202 | 0 | 60 | 656 | 1 | 597 | 0.0 | 868 |
MS.gene005494.t1 | AT4G23850 | 49.466 | 655 | 331 | 0 | 2 | 656 | 5 | 659 | 0.0 | 699 |
MS.gene005494.t1 | AT4G11030 | 50.612 | 654 | 321 | 2 | 2 | 654 | 5 | 657 | 0.0 | 688 |
MS.gene005494.t1 | AT1G64400 | 50.077 | 651 | 324 | 1 | 4 | 653 | 6 | 656 | 0.0 | 680 |
MS.gene005494.t1 | AT1G49430 | 47.604 | 647 | 337 | 2 | 8 | 652 | 11 | 657 | 0.0 | 627 |
MS.gene005494.t1 | AT1G49430 | 45.935 | 492 | 265 | 1 | 8 | 498 | 11 | 502 | 2.51e-158 | 466 |
MS.gene005494.t1 | AT5G27600 | 39.297 | 626 | 363 | 9 | 36 | 656 | 78 | 691 | 3.99e-142 | 431 |
MS.gene005494.t1 | AT3G05970 | 41.120 | 625 | 351 | 9 | 36 | 655 | 78 | 690 | 6.51e-142 | 430 |
MS.gene005494.t1 | AT1G77590 | 32.555 | 642 | 385 | 14 | 46 | 652 | 62 | 690 | 4.09e-102 | 326 |
MS.gene005494.t1 | AT2G04350 | 31.163 | 645 | 394 | 13 | 47 | 652 | 86 | 719 | 2.00e-91 | 299 |
MS.gene005494.t1 | AT2G04350 | 31.163 | 645 | 394 | 13 | 47 | 652 | 86 | 719 | 2.00e-91 | 299 |
MS.gene005494.t1 | AT1G77590 | 33.514 | 555 | 335 | 12 | 119 | 652 | 3 | 544 | 2.82e-90 | 291 |
MS.gene005494.t1 | AT3G23790 | 26.706 | 674 | 404 | 20 | 40 | 653 | 79 | 722 | 4.16e-51 | 189 |
MS.gene005494.t1 | AT4G14070 | 25.672 | 670 | 403 | 19 | 42 | 652 | 93 | 726 | 1.17e-47 | 179 |
MS.gene005494.t1 | AT2G47245 | 61.290 | 93 | 36 | 0 | 3 | 95 | 36 | 128 | 1.70e-32 | 122 |
MS.gene005494.t1 | AT1G66120 | 24.853 | 511 | 286 | 13 | 78 | 562 | 41 | 479 | 3.74e-24 | 107 |
MS.gene005494.t1 | AT2G17650 | 25.096 | 522 | 281 | 15 | 78 | 565 | 88 | 533 | 2.93e-23 | 105 |
MS.gene005494.t1 | AT1G21530 | 25.519 | 482 | 288 | 15 | 78 | 544 | 42 | 467 | 3.08e-23 | 104 |
MS.gene005494.t1 | AT1G21530 | 25.311 | 482 | 287 | 15 | 78 | 544 | 42 | 465 | 5.38e-22 | 100 |
MS.gene005494.t1 | AT3G16910 | 23.980 | 588 | 347 | 19 | 78 | 640 | 49 | 561 | 5.62e-22 | 100 |
MS.gene005494.t1 | AT1G65060 | 26.975 | 519 | 266 | 23 | 78 | 573 | 77 | 505 | 1.19e-21 | 99.8 |
MS.gene005494.t1 | AT1G20560 | 23.347 | 484 | 295 | 12 | 78 | 542 | 43 | 469 | 1.89e-21 | 99.0 |
MS.gene005494.t1 | AT1G65060 | 27.253 | 466 | 241 | 20 | 78 | 521 | 77 | 466 | 2.38e-21 | 98.2 |
MS.gene005494.t1 | AT1G65890 | 23.699 | 519 | 282 | 17 | 78 | 562 | 41 | 479 | 3.83e-21 | 98.2 |
MS.gene005494.t1 | AT1G65880 | 23.838 | 495 | 280 | 15 | 78 | 542 | 41 | 468 | 8.62e-21 | 97.1 |
MS.gene005494.t1 | AT1G51680 | 26.950 | 564 | 313 | 23 | 66 | 611 | 57 | 539 | 1.72e-20 | 95.9 |
MS.gene005494.t1 | AT4G19010 | 29.167 | 336 | 178 | 13 | 221 | 547 | 205 | 489 | 1.79e-20 | 96.3 |
MS.gene005494.t1 | AT1G77240 | 24.089 | 494 | 288 | 18 | 78 | 547 | 41 | 471 | 1.72e-19 | 92.8 |
MS.gene005494.t1 | AT1G51680 | 27.063 | 521 | 291 | 22 | 66 | 565 | 57 | 509 | 1.82e-19 | 92.8 |
MS.gene005494.t1 | AT4G05160 | 28.205 | 351 | 181 | 12 | 221 | 565 | 191 | 476 | 3.07e-19 | 92.0 |
MS.gene005494.t1 | AT1G51680 | 27.200 | 500 | 278 | 21 | 66 | 547 | 57 | 488 | 4.25e-19 | 91.3 |
MS.gene005494.t1 | AT1G20560 | 25.905 | 359 | 194 | 10 | 200 | 542 | 89 | 391 | 1.24e-17 | 86.7 |
MS.gene005494.t1 | AT5G63380 | 27.711 | 332 | 184 | 13 | 221 | 547 | 205 | 485 | 2.18e-16 | 83.2 |
MS.gene005494.t1 | AT3G21230 | 31.797 | 217 | 131 | 6 | 385 | 598 | 331 | 533 | 3.32e-16 | 82.8 |
MS.gene005494.t1 | AT3G21230 | 32.547 | 212 | 126 | 6 | 385 | 593 | 331 | 528 | 4.94e-16 | 82.0 |
MS.gene005494.t1 | AT3G21230 | 34.337 | 166 | 105 | 4 | 385 | 547 | 331 | 495 | 6.47e-15 | 78.2 |
MS.gene005494.t1 | AT5G16370 | 32.948 | 173 | 99 | 8 | 388 | 547 | 302 | 470 | 3.58e-13 | 73.2 |
MS.gene005494.t1 | AT5G16340 | 32.370 | 173 | 100 | 7 | 388 | 547 | 302 | 470 | 8.76e-13 | 71.6 |
MS.gene005494.t1 | AT5G38120 | 25.238 | 420 | 239 | 17 | 221 | 635 | 200 | 549 | 4.38e-12 | 69.7 |
MS.gene005494.t1 | AT5G38120 | 26.645 | 304 | 167 | 13 | 221 | 520 | 200 | 451 | 7.52e-12 | 68.6 |
MS.gene005494.t1 | AT5G38120 | 26.645 | 304 | 167 | 13 | 221 | 520 | 200 | 451 | 8.43e-12 | 68.6 |
MS.gene005494.t1 | AT5G38120 | 26.645 | 304 | 167 | 13 | 221 | 520 | 200 | 451 | 8.43e-12 | 68.6 |
MS.gene005494.t1 | AT1G75960 | 34.615 | 156 | 87 | 7 | 402 | 544 | 314 | 467 | 8.85e-12 | 68.6 |
MS.gene005494.t1 | AT1G68270 | 32.402 | 179 | 92 | 8 | 388 | 547 | 275 | 443 | 3.27e-11 | 66.6 |
MS.gene005494.t1 | AT1G62940 | 26.716 | 408 | 230 | 16 | 218 | 606 | 179 | 536 | 6.51e-11 | 65.9 |
Find 139 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATTTAAGATTTGGGTATA+TGG | 0.208667 | 1.1:+64302333 | MS.gene005494:intron |
CATAGGAGGGAATTCATTTC+TGG | 0.221124 | 1.1:-64296510 | None:intergenic |
ACGAATTGATTCCATGTATA+TGG | 0.245820 | 1.1:-64297967 | None:intergenic |
ATACTTACATCTTCAACTAT+TGG | 0.314643 | 1.1:-64302219 | None:intergenic |
ATTACCTTTCAATCTCTTAG+AGG | 0.321844 | 1.1:-64297778 | None:intergenic |
AGACCCGCTTCCATTTGATA+TGG | 0.328595 | 1.1:+64303115 | MS.gene005494:CDS |
GTGGAACCATCCATCTATTA+TGG | 0.334919 | 1.1:-64301968 | None:intergenic |
TTCTTCAATCTCAGAGCTTA+AGG | 0.341131 | 1.1:-64301394 | None:intergenic |
TGTGTTAAAACAACACCTTT+AGG | 0.342951 | 1.1:-64298921 | None:intergenic |
TATTTAAGATTTGGGTATAT+GGG | 0.344059 | 1.1:+64302334 | MS.gene005494:intron |
TTGGTCGAGGGAACATAGTT+TGG | 0.346788 | 1.1:-64302451 | None:intergenic |
CAACATGCTCAAGTATTATA+AGG | 0.357038 | 1.1:+64303178 | MS.gene005494:CDS |
CAGTGAAGGTTGAGGAAGGA+AGG | 0.365875 | 1.1:+64296435 | MS.gene005494:CDS |
GTCAAGTATTTGTCCTCCTT+TGG | 0.368480 | 1.1:+64298851 | MS.gene005494:CDS |
ATAGCACATATTTCTTCAAT+TGG | 0.372743 | 1.1:-64302470 | None:intergenic |
TCCTGATTTCACCTCTGCTT+GGG | 0.376030 | 1.1:+64296535 | MS.gene005494:CDS |
TTATTAGCAACATCTTCATT+TGG | 0.377802 | 1.1:-64302393 | None:intergenic |
ATGAAGATGTTGCTAATAAG+TGG | 0.378171 | 1.1:+64302397 | MS.gene005494:CDS |
TTGTATGTCTTCCAAACATA+TGG | 0.379295 | 1.1:-64296845 | None:intergenic |
CATAGATAGGACCATATGTT+TGG | 0.379474 | 1.1:+64296834 | MS.gene005494:intron |
CCTAGCATGCACATTTCATC+TGG | 0.398573 | 1.1:-64301787 | None:intergenic |
GAAGGATCTGAATGCGTTGC+TGG | 0.399764 | 1.1:+64300274 | MS.gene005494:intron |
ACAAAAGAAGCCATAATAGA+TGG | 0.412059 | 1.1:+64301958 | MS.gene005494:CDS |
GAGAGAAGGTTACGGTAAAC+AGG | 0.419962 | 1.1:-64296488 | None:intergenic |
ATCCTGATTTCACCTCTGCT+TGG | 0.423007 | 1.1:+64296534 | MS.gene005494:CDS |
CCAGTGAGGAGAACAGTCTT+TGG | 0.427412 | 1.1:+64300485 | MS.gene005494:CDS |
TTTAACACATGAAAACGTAT+TGG | 0.428986 | 1.1:+64298935 | MS.gene005494:CDS |
ATAATCCTCATAATACCATT+AGG | 0.434153 | 1.1:-64302114 | None:intergenic |
CATCTGTTGGTTACTATCAC+GGG | 0.436909 | 1.1:+64299176 | MS.gene005494:CDS |
TGCTTCCTAATGGTATTATG+AGG | 0.438775 | 1.1:+64302109 | MS.gene005494:CDS |
TGGTTTAATTCCAGCGTTTG+TGG | 0.443623 | 1.1:-64297947 | None:intergenic |
TCCCAAGCAGAGGTGAAATC+AGG | 0.444690 | 1.1:-64296536 | None:intergenic |
CAGAAATGAATTCCCTCCTA+TGG | 0.449905 | 1.1:+64296511 | MS.gene005494:CDS |
CGTGTTAGACTAATAATATC+TGG | 0.450794 | 1.1:+64301363 | MS.gene005494:CDS |
AACGTATTGGCTTTAGTAAG+AGG | 0.459025 | 1.1:+64298948 | MS.gene005494:CDS |
ATGGAATCAATTCGTACAAA+AGG | 0.460579 | 1.1:+64297975 | MS.gene005494:CDS |
CGATCAAGGATGTGAGCTAA+AGG | 0.462061 | 1.1:-64299121 | None:intergenic |
TCAAGATAAGAAGGTTAAAG+AGG | 0.465855 | 1.1:+64297591 | MS.gene005494:CDS |
CCAAAGACTGTTCTCCTCAC+TGG | 0.471510 | 1.1:-64300485 | None:intergenic |
TCTGGAAATGTAAGAGTAGT+TGG | 0.472023 | 1.1:-64301769 | None:intergenic |
AAGTCTCTTTCCATATCAAA+TGG | 0.472138 | 1.1:-64303125 | None:intergenic |
AGAGGATTGTAACCCATGTC+TGG | 0.475731 | 1.1:-64301859 | None:intergenic |
CATGGAACAATTTGAGGACA+AGG | 0.478090 | 1.1:+64298983 | MS.gene005494:CDS |
GAATAGCTTCAAGTCAATAC+TGG | 0.479819 | 1.1:+64302356 | MS.gene005494:CDS |
AAAGATGAGGCCACAAACGC+TGG | 0.481975 | 1.1:+64297937 | MS.gene005494:CDS |
TTCCGTAACGGTGCATCTGT+TGG | 0.484448 | 1.1:+64299163 | MS.gene005494:CDS |
ATTGGAGAAATGCTTCCTAA+TGG | 0.484911 | 1.1:+64302099 | MS.gene005494:CDS |
CCAGATGAAATGTGCATGCT+AGG | 0.486775 | 1.1:+64301787 | MS.gene005494:CDS |
ACATCCTCAAAACCGCATGC+TGG | 0.486879 | 1.1:+64296668 | MS.gene005494:CDS |
CATCCTCAAAACCGCATGCT+GGG | 0.489805 | 1.1:+64296669 | MS.gene005494:CDS |
CACTGTTTGCTGGTGTACCA+CGG | 0.492544 | 1.1:+64300321 | MS.gene005494:CDS |
GGATGGCGTAAAATTGTTGA+TGG | 0.493101 | 1.1:+64296690 | MS.gene005494:CDS |
AGTGAAGGTTGAGGAAGGAA+GGG | 0.493768 | 1.1:+64296436 | MS.gene005494:CDS |
GCATCTGTTGGTTACTATCA+CGG | 0.494616 | 1.1:+64299175 | MS.gene005494:CDS |
TTAAAGCCAACACTGTTTGC+TGG | 0.495412 | 1.1:+64300311 | MS.gene005494:CDS |
CTCAAAACCGCATGCTGGGA+TGG | 0.496069 | 1.1:+64296673 | MS.gene005494:CDS |
AATCTTGTTAAGCTTTCTCA+AGG | 0.500570 | 1.1:+64302150 | MS.gene005494:CDS |
TAATGAAGTGAAGCCCACTA+TGG | 0.502558 | 1.1:-64297902 | None:intergenic |
CATATTTCTTCAATTGGTCG+AGG | 0.507382 | 1.1:-64302464 | None:intergenic |
ATTCTTCAATACAACGATCA+AGG | 0.508652 | 1.1:-64299135 | None:intergenic |
CATTTCTGGAGAGAAGGTTA+CGG | 0.511492 | 1.1:-64296496 | None:intergenic |
GCGTAAAATTGTTGATGGAA+AGG | 0.513370 | 1.1:+64296695 | MS.gene005494:CDS |
CAAGGTCCTTACCATAGCCT+TGG | 0.519011 | 1.1:-64301449 | None:intergenic |
AAGGTTGAGGAAGGAAGGGA+AGG | 0.520875 | 1.1:+64296440 | MS.gene005494:CDS |
GACATGGGTTACAATCCTCT+TGG | 0.525689 | 1.1:+64301862 | MS.gene005494:CDS |
GTATTATGAGGATTATTGAC+AGG | 0.526644 | 1.1:+64302121 | MS.gene005494:CDS |
CCTCTATGAAATTAGTTGAA+GGG | 0.527464 | 1.1:+64303065 | MS.gene005494:intron |
CTGGAATTAAACCATATACA+TGG | 0.532708 | 1.1:+64297956 | MS.gene005494:CDS |
GGAATTCATTTCTGGAGAGA+AGG | 0.533444 | 1.1:-64296502 | None:intergenic |
AATAAGTGGGCATATGCAAA+TGG | 0.534338 | 1.1:+64302411 | MS.gene005494:CDS |
GTATATATCCTAGGGGACAT+TGG | 0.534838 | 1.1:+64302081 | MS.gene005494:intron |
AAGGAGGACAAATACTTGAC+GGG | 0.536225 | 1.1:-64298848 | None:intergenic |
TGTATTCAATGAATTGCGGC+TGG | 0.537145 | 1.1:+64301828 | MS.gene005494:CDS |
GATCAAGGATGTGAGCTAAA+GGG | 0.537448 | 1.1:-64299120 | None:intergenic |
AACCAACAGATGCACCGTTA+CGG | 0.537936 | 1.1:-64299165 | None:intergenic |
GAGGTGAAATCAGGATCCAT+AGG | 0.539078 | 1.1:-64296527 | None:intergenic |
ATTTGATATGGAAAGAGACT+TGG | 0.545381 | 1.1:+64303127 | MS.gene005494:CDS |
ACTGTTTGCTGGTGTACCAC+GGG | 0.547054 | 1.1:+64300322 | MS.gene005494:CDS |
GCCTTTGTATGCCAAGGCTA+TGG | 0.547652 | 1.1:+64301438 | MS.gene005494:CDS |
GGCTACACTTACAGCCATAG+TGG | 0.547898 | 1.1:+64297888 | MS.gene005494:intron |
AAGGGATTTGAACATATCAA+AGG | 0.551479 | 1.1:+64303083 | MS.gene005494:CDS |
ATTGGCTTTAGTAAGAGGAA+TGG | 0.559105 | 1.1:+64298953 | MS.gene005494:CDS |
AAAGGAGGACAAATACTTGA+CGG | 0.560929 | 1.1:-64298849 | None:intergenic |
TGCACAATAATGTATACAAG+TGG | 0.561176 | 1.1:+64298885 | MS.gene005494:CDS |
TTTCCATATCAAATGGAAGC+GGG | 0.571957 | 1.1:-64303118 | None:intergenic |
ATGTATACAAGTGGAACTAG+TGG | 0.575171 | 1.1:+64298894 | MS.gene005494:CDS |
TCCACAATGGATTATCGCAA+TGG | 0.583541 | 1.1:+64297267 | MS.gene005494:CDS |
ACTTGTGCCTTTGTATGCCA+AGG | 0.583881 | 1.1:+64301432 | MS.gene005494:CDS |
AAATCCTCTAAGAGATTGAA+AGG | 0.590421 | 1.1:+64297774 | MS.gene005494:CDS |
GTGAAATCAGGATCCATAGG+AGG | 0.591865 | 1.1:-64296524 | None:intergenic |
AGATCTTCTAGCCTTCAGAA+AGG | 0.595184 | 1.1:+64301151 | MS.gene005494:CDS |
TGAAGATGTTGCTAATAAGT+GGG | 0.599300 | 1.1:+64302398 | MS.gene005494:CDS |
ACCATAGCCTTGGCATACAA+AGG | 0.601421 | 1.1:-64301439 | None:intergenic |
AAGAAGCCATAATAGATGGA+TGG | 0.604745 | 1.1:+64301962 | MS.gene005494:CDS |
ATATTTCTTCAATTGGTCGA+GGG | 0.606785 | 1.1:-64302463 | None:intergenic |
CATTAGGTTAAAGCAAGGCT+AGG | 0.612184 | 1.1:+64301336 | MS.gene005494:intron |
CACACCATTAGGTTAAAGCA+AGG | 0.612761 | 1.1:+64301331 | MS.gene005494:intron |
GATGTGAGCTAAAGGGAGGA+AGG | 0.614011 | 1.1:-64299113 | None:intergenic |
GTGCATATGTCATGAGCCAA+AGG | 0.615739 | 1.1:-64298867 | None:intergenic |
ATGTGCATGCTAGGCAATGT+TGG | 0.618977 | 1.1:+64301796 | MS.gene005494:CDS |
GCTTCTGCTTTAAAAGCATG+TGG | 0.622653 | 1.1:+64296896 | MS.gene005494:CDS |
GACAGACACAACCTTTCTGA+AGG | 0.623817 | 1.1:-64301162 | None:intergenic |
CTTTCCATATCAAATGGAAG+CGG | 0.623939 | 1.1:-64303119 | None:intergenic |
ATCTACAGCTGTGAGAAACA+AGG | 0.630405 | 1.1:+64302503 | MS.gene005494:CDS |
GGAACTAGTGGAGATCCTAA+AGG | 0.633228 | 1.1:+64298906 | MS.gene005494:CDS |
TAACTGTATTCAATGAATTG+CGG | 0.635370 | 1.1:+64301824 | MS.gene005494:CDS |
CCTGAAAATATCCCAAGCAG+AGG | 0.639200 | 1.1:-64296546 | None:intergenic |
ACAATGGATTATCGCAATGG+AGG | 0.642131 | 1.1:+64297270 | MS.gene005494:CDS |
GGGCTTCACTTCATTAACTG+AGG | 0.642336 | 1.1:+64297909 | MS.gene005494:CDS |
AAACTTGGTTGGATGAACAA+AGG | 0.643154 | 1.1:+64301098 | MS.gene005494:CDS |
CTGACACATATCTCACCACA+TGG | 0.645144 | 1.1:-64301892 | None:intergenic |
TAGGTTAAAGCAAGGCTAGG+TGG | 0.646689 | 1.1:+64301339 | MS.gene005494:intron |
AACTGAGGAAGAGAAAGATG+AGG | 0.647032 | 1.1:+64297924 | MS.gene005494:CDS |
GCTGGAGGAAGTTCCAGACA+TGG | 0.647892 | 1.1:+64301846 | MS.gene005494:CDS |
GGTACACCAGCAAACAGTGT+TGG | 0.650079 | 1.1:-64300317 | None:intergenic |
TCCATTGCGATAATCCATTG+TGG | 0.654182 | 1.1:-64297268 | None:intergenic |
TGAAATCAGGATCCATAGGA+GGG | 0.655083 | 1.1:-64296523 | None:intergenic |
TTACCAAGTGTGTCATAGAG+AGG | 0.657682 | 1.1:-64297431 | None:intergenic |
ATATGTTTGGAAGACATACA+AGG | 0.657772 | 1.1:+64296847 | MS.gene005494:CDS |
GCTACACTTACAGCCATAGT+GGG | 0.658633 | 1.1:+64297889 | MS.gene005494:intron |
CTGGAGGAAGTTCCAGACAT+GGG | 0.659695 | 1.1:+64301847 | MS.gene005494:CDS |
TTCAGGTATCAAGAAAGCAG+TGG | 0.659983 | 1.1:+64300451 | MS.gene005494:intron |
ATGGATCTAACTGTCCACAA+TGG | 0.660741 | 1.1:+64297254 | MS.gene005494:CDS |
ATTCAATGAATTGCGGCTGG+AGG | 0.661838 | 1.1:+64301831 | MS.gene005494:CDS |
CATATGTCATGAGCCAAAGG+AGG | 0.664582 | 1.1:-64298864 | None:intergenic |
GTGCCTCTCTATGACACACT+TGG | 0.668273 | 1.1:+64297428 | MS.gene005494:CDS |
TTACTTTGTGTAGATGACTG+TGG | 0.670138 | 1.1:+64299075 | MS.gene005494:intron |
CCAGGTTTGACAGAAACATG+TGG | 0.679060 | 1.1:+64301745 | MS.gene005494:intron |
GGATCTGAATGCGTTGCTGG+AGG | 0.681374 | 1.1:+64300277 | MS.gene005494:intron |
CAAGGATGTGAGCTAAAGGG+AGG | 0.681394 | 1.1:-64299117 | None:intergenic |
GAAGAGAAAATCAACCTGTG+TGG | 0.682894 | 1.1:-64301987 | None:intergenic |
ATCTGTTGGTTACTATCACG+GGG | 0.686386 | 1.1:+64299177 | MS.gene005494:CDS |
CCTCTTGGAACTCCTCCATG+TGG | 0.694715 | 1.1:+64301877 | MS.gene005494:CDS |
ATAGATGGATGGTTCCACAC+AGG | 0.705801 | 1.1:+64301973 | MS.gene005494:CDS |
GTTAGACTAATAATATCTGG+AGG | 0.707528 | 1.1:+64301366 | MS.gene005494:CDS |
TGTGGTGAGATATGTGTCAG+AGG | 0.711445 | 1.1:+64301895 | MS.gene005494:CDS |
CCACATGGAGGAGTTCCAAG+AGG | 0.716589 | 1.1:-64301877 | None:intergenic |
ACACATATCTCACCACATGG+AGG | 0.748292 | 1.1:-64301889 | None:intergenic |
TGGCACAACTAAATCCAGTG+AGG | 0.766617 | 1.1:+64300471 | MS.gene005494:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 64296422 | 64303435 | 64296422 | ID=MS.gene005494 |
chr1.1 | mRNA | 64296422 | 64303435 | 64296422 | ID=MS.gene005494.t1;Parent=MS.gene005494 |
chr1.1 | exon | 64296422 | 64296567 | 64296422 | ID=MS.gene005494.t1.exon1;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64296422 | 64296567 | 64296422 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64296653 | 64296716 | 64296653 | ID=MS.gene005494.t1.exon2;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64296653 | 64296716 | 64296653 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64296839 | 64296928 | 64296839 | ID=MS.gene005494.t1.exon3;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64296839 | 64296928 | 64296839 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64297235 | 64297291 | 64297235 | ID=MS.gene005494.t1.exon4;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64297235 | 64297291 | 64297235 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64297401 | 64297449 | 64297401 | ID=MS.gene005494.t1.exon5;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64297401 | 64297449 | 64297401 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64297536 | 64297612 | 64297536 | ID=MS.gene005494.t1.exon6;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64297536 | 64297612 | 64297536 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64297756 | 64297795 | 64297756 | ID=MS.gene005494.t1.exon7;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64297756 | 64297795 | 64297756 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64297902 | 64297996 | 64297902 | ID=MS.gene005494.t1.exon8;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64297902 | 64297996 | 64297902 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64298837 | 64299004 | 64298837 | ID=MS.gene005494.t1.exon9;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64298837 | 64299004 | 64298837 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64299088 | 64299198 | 64299088 | ID=MS.gene005494.t1.exon10;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64299088 | 64299198 | 64299088 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64300278 | 64300365 | 64300278 | ID=MS.gene005494.t1.exon11;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64300278 | 64300365 | 64300278 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64300456 | 64300522 | 64300456 | ID=MS.gene005494.t1.exon12;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64300456 | 64300522 | 64300456 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64301097 | 64301172 | 64301097 | ID=MS.gene005494.t1.exon13;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64301097 | 64301172 | 64301097 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64301342 | 64301459 | 64301342 | ID=MS.gene005494.t1.exon14;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64301342 | 64301459 | 64301342 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64301749 | 64301994 | 64301749 | ID=MS.gene005494.t1.exon15;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64301749 | 64301994 | 64301749 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64302094 | 64302233 | 64302094 | ID=MS.gene005494.t1.exon16;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64302094 | 64302233 | 64302094 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64302342 | 64302524 | 64302342 | ID=MS.gene005494.t1.exon17;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64302342 | 64302524 | 64302342 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64303080 | 64303199 | 64303080 | ID=MS.gene005494.t1.exon18;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64303080 | 64303199 | 64303080 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
chr1.1 | exon | 64303400 | 64303435 | 64303400 | ID=MS.gene005494.t1.exon19;Parent=MS.gene005494.t1 |
chr1.1 | CDS | 64303400 | 64303435 | 64303400 | ID=cds.MS.gene005494.t1;Parent=MS.gene005494.t1 |
Gene Sequence |
Protein sequence |