AlfalfaGEDB | MS.gene036511

M. sativa cultivar XinJiangDaYe / MS.gene036511

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF12854.10 PF13041.9 PF14432.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036511.t1	RHN64245.1	95.8	519	22	0	1	519	84	602	8.60E-294	1018.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036511.t1	Q8VYH0	59.5	528	204	5	1	519	90	616	5.9e-182	638.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036511.t1	A0A396IK83	95.8	519	22	0	1	519	84	602	6.2e-294	1018.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene016742	MS.gene036511	PPI
MS.gene016743	MS.gene036511	PPI
MS.gene023128	MS.gene036511	PPI
MS.gene032521	MS.gene036511	PPI
MS.gene036511	MS.gene81617	PPI
MS.gene036511	MS.gene069945	PPI
MS.gene036511	MS.gene065924	PPI
MS.gene036511	MS.gene070503	PPI
MS.gene036511	MS.gene028325	PPI
MS.gene036511	MS.gene44729	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036511.t1	MTR_4g119420	93.256	519	22	1	1	519	84	589	0.0	988
MS.gene036511.t1	MTR_4g119420	31.325	249	159	4	21	263	3	245	8.59e-26	111
MS.gene036511.t1	MTR_4g119420	23.204	181	135	2	155	335	35	211	2.45e-12	69.7
MS.gene036511.t1	MTR_2g101710	42.524	515	290	5	5	519	112	620	1.26e-136	409
MS.gene036511.t1	MTR_2g101710	26.557	305	211	6	30	328	32	329	3.69e-29	122
MS.gene036511.t1	MTR_1g059720	40.153	523	300	7	1	519	61	574	2.44e-136	406
MS.gene036511.t1	MTR_1g059720	25.091	275	200	4	61	335	20	288	1.76e-22	101
MS.gene036511.t1	MTR_1g007610	40.840	524	290	9	5	519	156	668	7.69e-134	403
MS.gene036511.t1	MTR_1g007610	35.526	228	143	2	39	263	89	315	2.57e-34	137
MS.gene036511.t1	MTR_1g007610	24.194	248	175	5	140	378	88	331	1.68e-12	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036511.t1	AT4G15720	59.470	528	204	5	1	519	90	616	0.0	647
MS.gene036511.t1	AT4G15720	27.273	319	216	6	43	354	31	340	4.42e-24	106
MS.gene036511.t1	AT4G37170	41.346	520	299	5	1	519	177	691	1.09e-133	404
MS.gene036511.t1	AT4G37170	28.571	357	218	4	31	356	75	425	3.43e-37	146
MS.gene036511.t1	AT3G23330	40.077	519	306	4	1	519	93	606	2.80e-133	400
MS.gene036511.t1	AT3G23330	28.947	266	180	4	92	353	83	343	3.24e-27	115
MS.gene036511.t1	AT3G13770	40.691	521	302	6	1	519	113	628	3.00e-133	400
MS.gene036511.t1	AT3G13770	31.429	315	202	5	44	354	55	359	1.95e-40	155
MS.gene036511.t1	AT3G23330	40.077	519	306	4	1	519	202	715	2.17e-132	401
MS.gene036511.t1	AT3G23330	24.936	393	250	6	1	353	65	452	4.30e-35	140

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Find 134 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACCAAGACACAACATT+TGG	0.391473	8.1:+8936880	None:intergenic
AACATCAACAAACACCAACC+CGG	0.614682	8.1:+8935595	None:intergenic
AACTCCATGAATGAGAAATA+TGG	0.208399	8.1:-8936088	MS.gene036511:CDS
AAGAATTCATGCACTTGTTG+AGG	0.527105	8.1:-8936707	MS.gene036511:CDS
AAGACCAAGACACAACATTT+GGG	0.469540	8.1:+8936881	None:intergenic
AAGAGGCATAGTGCCATATT+GGG	0.463932	8.1:+8936826	None:intergenic
AAGATGATGCTTTATTGTGG+GGG	0.682123	8.1:-8935958	MS.gene036511:CDS
AAGCAGTTGGATTGAGATAA+AGG	0.336811	8.1:-8935738	MS.gene036511:CDS
AAGGGAGAATGAAAGAGAGG+GGG	0.704008	8.1:-8935634	MS.gene036511:CDS
AATAGAATCAAACCAACAAG+TGG	0.625292	8.1:-8935870	MS.gene036511:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCCATGAATGAGAAATA+TGG	-	chr8.1:8936153-8936172	MS.gene036511:CDS	30.0%
AATAGAATCAAACCAACAAG+TGG	-	chr8.1:8936371-8936390	MS.gene036511:CDS	30.0%
ACTCCATGAATGAGAAATAT+GGG	-	chr8.1:8936154-8936173	MS.gene036511:CDS	30.0%
ATCACTACTTATTCACAGAA+TGG	-	chr8.1:8935691-8935710	MS.gene036511:CDS	30.0%
ATTCAGGGCTTATTGATAAA+GGG	-	chr8.1:8936118-8936137	MS.gene036511:CDS	30.0%
CAAGTTCTTCATTATTCTGA+TGG	+	chr8.1:8936760-8936779	None:intergenic	30.0%
CCCTATACTTCAATAATTGT+TGG	-	chr8.1:8935982-8936001	MS.gene036511:CDS	30.0%
CTGCATAACATGAAATGATT+CGG	+	chr8.1:8935775-8935794	None:intergenic	30.0%
CTTCCCTAATTGATATGTAT+GGG	-	chr8.1:8935590-8935609	MS.gene036511:CDS	30.0%
TAAACTCACAATTTCCTCTT+TGG	+	chr8.1:8936682-8936701	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	8935352	8936911	8935352	ID=MS.gene036511
chr8.1	mRNA	8935352	8936911	8935352	ID=MS.gene036511.t1;Parent=MS.gene036511
chr8.1	exon	8935352	8936911	8935352	ID=MS.gene036511.t1.exon1;Parent=MS.gene036511.t1
chr8.1	CDS	8935352	8936911	8935352	ID=cds.MS.gene036511.t1;Parent=MS.gene036511.t1

Gene Sequence

>MS.gene036511

ATGTCTCACCCAAATGTTGTGTCTTGGTCTTTGCTTATGGCTGGTTATGTCAGACAGGGTCAACCCAATATGGCACTATGCCTCTTCCATCAAATGCAAGGAACGTTGGTTATGCCAAACGAATTCACTTTTTCCACTCTCGTTAATGCGTGTTCTATTCTTGCTAATATTGAGATTGGCAGAAGAATTCATGCACTTGTTGAGGTTTTTGGTTATCATTCTGATCTTGTTGTGTGTTCTTCCCTAATTGATATGTATGGGAAATGTAACTGTGTTGAGGAGGCGCGGATGATTTTTGACTTTATGTGGGTAAAGAATGTGGTTTCTTGGACTTCCATGATCACTACTTATTCACAGAATGGACAAGGGCATCTTGCTCTACAATTGTTCAGGGAATTCAATCATATCAAGATGAATAAACCGAATCATTTCATGTTATGCAGTGCAGTCACCGCTTGTGCTAGCTTGGGGAGGCTAGGTTCGGGGAAGATCACTCATGGTGTGGTTATCCGTCTTGGACACGATGCAAGTGATGTGGTTGCTAGTGCACTTGTGGATATGTATGCTAAATGTGGTTGTGTCAGCTATTCTGACAAAGTCTTTAGGAGAATAGTCAATCCTTCAGTGGTTCCCTATACTTCAATAATTGTTGGTGCTGCAAAGTATGGACTTGGAAAATTGTCTTTAAGACTATTTCAGGAAATGGTTGATAGAAGAATAAAACCAAATGGCATCACTTTTGTTGGGGTCTTACATGCTTGCAGCCATTCAGGGCTTATTGATAAAGGGCTTGAGCTTTTTAACTCCATGAATGAGAAATATGGGGTGATGCCAGATGCAAGACATTATACATGCATTGTAGATATGCTTGGTCGAATTGGGCGTATAGATGAGGCATATCAGCTAGCAAAATCAGTTCAAGTTGGAAGTGAAGATGATGCTTTATTGTGGGGGACACTTCTTTCAGCTAGTAGGATTCATGGTAGAGTAGACATTGCCATTGAAGCGAGCAATCGGGTAATAGAATCAAACCAACAAGTGGCAGCTGCATATGTTACATTGTCCAACACTTATGCATTGGCAGGGGATTGGGAAAATGCTCATAATCTACGATCTGAAATGAAGCGTACCGGAGTTTATAAGGAACCCGGAAGCAGTTGGATTGAGATAAAGGATTCAACATATTTGTTCCATGCTGGAGACTTATCTAAGTGCAGTCAAAAGAGGGGGATACTAAGCTTGCTAAGGGAACTGGAAGGGAGAATGAAAGAGAGGGGGCATGTGGGAGTGACTACCGGGTTGGTGTTTGTTGATGTTGAAGAGGAAGCCAAAGAGGAAATTGTGAGTTTACACAGTGAGAAACTTGCATTGGCGTTTGGGTTATTAAACACACCTAAAGGAATCACCATCAGAATAATGAAGAACTTGAGAATGTGCAGGGATTGCCATGAAGCCTTTAACCTTATTAGTGATATTGTAGAGAGAGAATTTGTTGTGAGAGATGTGAACAGATTTCATCATTTCAAAAATGGATCATGCTCGTGCGGAGATTTTTGGTAA

Protein sequence

>MS.gene036511.t1

MSHPNVVSWSLLMAGYVRQGQPNMALCLFHQMQGTLVMPNEFTFSTLVNACSILANIEIGRRIHALVEVFGYHSDLVVCSSLIDMYGKCNCVEEARMIFDFMWVKNVVSWTSMITTYSQNGQGHLALQLFREFNHIKMNKPNHFMLCSAVTACASLGRLGSGKITHGVVIRLGHDASDVVASALVDMYAKCGCVSYSDKVFRRIVNPSVVPYTSIIVGAAKYGLGKLSLRLFQEMVDRRIKPNGITFVGVLHACSHSGLIDKGLELFNSMNEKYGVMPDARHYTCIVDMLGRIGRIDEAYQLAKSVQVGSEDDALLWGTLLSASRIHGRVDIAIEASNRVIESNQQVAAAYVTLSNTYALAGDWENAHNLRSEMKRTGVYKEPGSSWIEIKDSTYLFHAGDLSKCSQKRGILSLLRELEGRMKERGHVGVTTGLVFVDVEEEAKEEIVSLHSEKLALAFGLLNTPKGITIRIMKNLRMCRDCHEAFNLISDIVEREFVVRDVNRFHHFKNGSCSCGDFW