Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06986.t1 | XP_003625924.1 | 98.1 | 162 | 3 | 0 | 1 | 162 | 1 | 162 | 3.90E-83 | 317.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06986.t1 | Q8VYN9 | 32.1 | 159 | 91 | 4 | 12 | 158 | 52 | 205 | 1.6e-08 | 60.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06986.t1 | B7FGF4 | 98.1 | 162 | 3 | 0 | 1 | 162 | 1 | 162 | 2.8e-83 | 317.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene06986 | 0.834078 | 3.69E-56 | -1.69E-46 |
| MS.gene049217 | MS.gene06986 | 0.808028 | 3.79E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene06986 | 0.832818 | 7.61E-56 | -1.69E-46 |
| MS.gene049232 | MS.gene06986 | 0.848715 | 5.14E-60 | -1.69E-46 |
| MS.gene049285 | MS.gene06986 | 0.84816 | 7.31E-60 | -1.69E-46 |
| MS.gene049320 | MS.gene06986 | 0.860591 | 1.86E-63 | -1.69E-46 |
| MS.gene049600 | MS.gene06986 | 0.808522 | 2.97E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene06986 | 0.846028 | 2.81E-59 | -1.69E-46 |
| MS.gene05010 | MS.gene06986 | 0.81557 | 8.64E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene06986 | 0.820182 | 7.85E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene06986 | 0.836884 | 7.20E-57 | -1.69E-46 |
| MS.gene050170 | MS.gene06986 | 0.825161 | 5.45E-54 | -1.69E-46 |
| MS.gene050216 | MS.gene06986 | 0.80672 | 7.17E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene06986 | 0.855482 | 6.12E-62 | -1.69E-46 |
| MS.gene050333 | MS.gene06986 | 0.862195 | 6.02E-64 | -1.69E-46 |
| MS.gene050444 | MS.gene06986 | 0.81368 | 2.26E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene06986 | 0.837925 | 3.90E-57 | -1.69E-46 |
| MS.gene050504 | MS.gene06986 | 0.845696 | 3.46E-59 | -1.69E-46 |
| MS.gene050518 | MS.gene06986 | 0.8522 | 5.39E-61 | -1.69E-46 |
| MS.gene050577 | MS.gene06986 | 0.855486 | 6.11E-62 | -1.69E-46 |
| MS.gene050612 | MS.gene06986 | 0.866855 | 2.10E-65 | -1.69E-46 |
| MS.gene050662 | MS.gene06986 | 0.817759 | 2.79E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene06986 | 0.843494 | 1.35E-58 | -1.69E-46 |
| MS.gene050699 | MS.gene06986 | 0.835787 | 1.37E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene06986 | 0.842554 | 2.41E-58 | -1.69E-46 |
| MS.gene05080 | MS.gene06986 | 0.819146 | 1.35E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene06986 | 0.809486 | 1.85E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene06986 | 0.805568 | 1.25E-49 | -1.69E-46 |
| MS.gene050876 | MS.gene06986 | 0.837099 | 6.35E-57 | -1.69E-46 |
| MS.gene050904 | MS.gene06986 | 0.826238 | 3.03E-54 | -1.69E-46 |
| MS.gene050986 | MS.gene06986 | 0.830041 | 3.67E-55 | -1.69E-46 |
| MS.gene051317 | MS.gene06986 | 0.824279 | 8.80E-54 | -1.69E-46 |
| MS.gene051509 | MS.gene06986 | 0.800903 | 1.16E-48 | -1.69E-46 |
| MS.gene051949 | MS.gene06986 | 0.815241 | 1.02E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene06986 | 0.823541 | 1.31E-53 | -1.69E-46 |
| MS.gene052482 | MS.gene06986 | 0.826614 | 2.46E-54 | -1.69E-46 |
| MS.gene052486 | MS.gene06986 | 0.837643 | 4.61E-57 | -1.69E-46 |
| MS.gene052504 | MS.gene06986 | 0.811973 | 5.35E-51 | -1.69E-46 |
| MS.gene052506 | MS.gene06986 | 0.839735 | 1.33E-57 | -1.69E-46 |
| MS.gene052822 | MS.gene06986 | 0.85841 | 8.40E-63 | -1.69E-46 |
| MS.gene052916 | MS.gene06986 | 0.86935 | 3.31E-66 | -1.69E-46 |
| MS.gene053203 | MS.gene06986 | 0.801332 | 9.47E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene06986 | 0.813716 | 2.22E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene06986 | 0.817842 | 2.67E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene06986 | 0.81794 | 2.54E-52 | -1.69E-46 |
| MS.gene053626 | MS.gene06986 | 0.806955 | 6.40E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene06986 | 0.837389 | 5.35E-57 | -1.69E-46 |
| MS.gene054595 | MS.gene06986 | 0.803207 | 3.89E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene06986 | 0.84186 | 3.68E-58 | -1.69E-46 |
| MS.gene05470 | MS.gene06986 | 0.810748 | 9.88E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene06986 | 0.857105 | 2.05E-62 | -1.69E-46 |
| MS.gene055251 | MS.gene06986 | -0.8112 | 7.88E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene06986 | 0.845389 | 4.19E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene06986 | 0.846632 | 1.92E-59 | -1.69E-46 |
| MS.gene055577 | MS.gene06986 | 0.811533 | 6.68E-51 | -1.69E-46 |
| MS.gene055634 | MS.gene06986 | 0.825117 | 5.58E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene06986 | 0.812162 | 4.87E-51 | -1.69E-46 |
| MS.gene055748 | MS.gene06986 | 0.842403 | 2.64E-58 | -1.69E-46 |
| MS.gene055750 | MS.gene06986 | 0.867445 | 1.36E-65 | -1.69E-46 |
| MS.gene055751 | MS.gene06986 | 0.860504 | 1.97E-63 | -1.69E-46 |
| MS.gene055776 | MS.gene06986 | 0.860669 | 1.76E-63 | -1.69E-46 |
| MS.gene055849 | MS.gene06986 | 0.862339 | 5.44E-64 | -1.69E-46 |
| MS.gene05589 | MS.gene06986 | 0.841912 | 3.56E-58 | -1.69E-46 |
| MS.gene056046 | MS.gene06986 | 0.807851 | 4.13E-50 | -1.69E-46 |
| MS.gene056487 | MS.gene06986 | 0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene06986 | 0.870544 | 1.35E-66 | -1.69E-46 |
| MS.gene056510 | MS.gene06986 | 0.843958 | 1.02E-58 | -1.69E-46 |
| MS.gene056549 | MS.gene06986 | 0.818925 | 1.52E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene06986 | 0.863762 | 1.98E-64 | -1.69E-46 |
| MS.gene056692 | MS.gene06986 | 0.836908 | 7.10E-57 | -1.69E-46 |
| MS.gene057076 | MS.gene06986 | 0.81756 | 3.10E-52 | -1.69E-46 |
| MS.gene05753 | MS.gene06986 | 0.821426 | 4.06E-53 | -1.69E-46 |
| MS.gene057687 | MS.gene06986 | 0.807317 | 5.36E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene06986 | 0.808706 | 2.71E-50 | -1.69E-46 |
| MS.gene057857 | MS.gene06986 | 0.802193 | 6.30E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene06986 | -0.801516 | 8.68E-49 | -1.69E-46 |
| MS.gene058382 | MS.gene06986 | -0.800039 | 1.74E-48 | -1.69E-46 |
| MS.gene058419 | MS.gene06986 | 0.869142 | 3.87E-66 | -1.69E-46 |
| MS.gene058773 | MS.gene06986 | 0.818032 | 2.42E-52 | -1.69E-46 |
| MS.gene058838 | MS.gene06986 | 0.804827 | 1.79E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene06986 | 0.83842 | 2.91E-57 | -1.69E-46 |
| MS.gene059079 | MS.gene06986 | 0.818143 | 2.29E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene06986 | 0.818704 | 1.71E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene06986 | 0.842601 | 2.34E-58 | -1.69E-46 |
| MS.gene059703 | MS.gene06986 | -0.8035 | 3.39E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene06986 | 0.824372 | 8.36E-54 | -1.69E-46 |
| MS.gene059756 | MS.gene06986 | 0.800974 | 1.12E-48 | -1.69E-46 |
| MS.gene059865 | MS.gene06986 | 0.871377 | 7.16E-67 | -1.69E-46 |
| MS.gene06000 | MS.gene06986 | 0.809711 | 1.65E-50 | -1.69E-46 |
| MS.gene060526 | MS.gene06986 | 0.803499 | 3.39E-49 | -1.69E-46 |
| MS.gene060703 | MS.gene06986 | 0.842651 | 2.27E-58 | -1.69E-46 |
| MS.gene060762 | MS.gene06986 | 0.844307 | 8.20E-59 | -1.69E-46 |
| MS.gene060778 | MS.gene06986 | 0.837821 | 4.15E-57 | -1.69E-46 |
| MS.gene06077 | MS.gene06986 | 0.818885 | 1.55E-52 | -1.69E-46 |
| MS.gene06097 | MS.gene06986 | 0.801026 | 1.09E-48 | -1.69E-46 |
| MS.gene060982 | MS.gene06986 | 0.881412 | 2.45E-70 | -1.69E-46 |
| MS.gene061044 | MS.gene06986 | -0.806805 | 6.88E-50 | -1.69E-46 |
| MS.gene061134 | MS.gene06986 | 0.804891 | 1.74E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene06986 | 0.803272 | 3.77E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92557 | MS.gene06986 | PPI |
| MS.gene06986 | MS.gene005525 | PPI |
| MS.gene07276 | MS.gene06986 | PPI |
| MS.gene73234 | MS.gene06986 | PPI |
| MS.gene06986 | MS.gene037687 | PPI |
| MS.gene20798 | MS.gene06986 | PPI |
| MS.gene048106 | MS.gene06986 | PPI |
| MS.gene20848 | MS.gene06986 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06986.t1 | MTR_7g108830 | 98.148 | 162 | 3 | 0 | 1 | 162 | 1 | 162 | 1.35e-116 | 327 |
| MS.gene06986.t1 | MTR_8g058620 | 98.148 | 162 | 3 | 0 | 1 | 162 | 1 | 162 | 1.35e-116 | 327 |
| MS.gene06986.t1 | MTR_1g088640 | 66.667 | 168 | 49 | 3 | 1 | 162 | 1 | 167 | 3.51e-77 | 227 |
| MS.gene06986.t1 | MTR_1g088640 | 66.867 | 166 | 49 | 3 | 1 | 162 | 1 | 164 | 1.35e-76 | 225 |
| MS.gene06986.t1 | MTR_1g088620 | 89.855 | 69 | 7 | 0 | 94 | 162 | 218 | 286 | 1.15e-36 | 128 |
| MS.gene06986.t1 | MTR_1g087200 | 42.500 | 160 | 79 | 6 | 6 | 158 | 5 | 158 | 6.23e-33 | 114 |
| MS.gene06986.t1 | MTR_1g083950 | 40.741 | 162 | 89 | 4 | 1 | 159 | 1 | 158 | 6.80e-33 | 115 |
| MS.gene06986.t1 | MTR_1g054750 | 36.905 | 168 | 93 | 4 | 7 | 162 | 21 | 187 | 1.56e-29 | 107 |
| MS.gene06986.t1 | MTR_1g054765 | 38.506 | 174 | 88 | 5 | 7 | 162 | 2 | 174 | 3.61e-29 | 105 |
| MS.gene06986.t1 | MTR_5g065980 | 39.181 | 171 | 88 | 5 | 1 | 156 | 1 | 170 | 3.06e-26 | 98.2 |
| MS.gene06986.t1 | MTR_5g065980 | 38.824 | 170 | 88 | 5 | 1 | 156 | 1 | 168 | 7.26e-26 | 97.4 |
| MS.gene06986.t1 | MTR_5g065980 | 34.667 | 150 | 82 | 5 | 1 | 136 | 1 | 148 | 1.17e-13 | 65.9 |
| MS.gene06986.t1 | MTR_2g034200 | 28.144 | 167 | 92 | 4 | 12 | 162 | 9 | 163 | 1.54e-12 | 62.4 |
| MS.gene06986.t1 | MTR_5g077130 | 31.288 | 163 | 96 | 6 | 4 | 156 | 1 | 157 | 1.55e-12 | 62.4 |
| MS.gene06986.t1 | MTR_5g077130 | 33.333 | 156 | 87 | 7 | 12 | 156 | 9 | 158 | 2.29e-12 | 62.0 |
| MS.gene06986.t1 | MTR_4g064933 | 30.719 | 153 | 96 | 4 | 12 | 157 | 9 | 158 | 7.36e-12 | 60.5 |
| MS.gene06986.t1 | MTR_7g065770 | 32.911 | 158 | 96 | 5 | 6 | 156 | 3 | 157 | 8.92e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06986.t1 | AT2G47710 | 67.284 | 162 | 51 | 2 | 1 | 161 | 1 | 161 | 8.06e-72 | 213 |
| MS.gene06986.t1 | AT3G11930 | 39.506 | 162 | 85 | 4 | 10 | 159 | 35 | 195 | 3.06e-34 | 119 |
| MS.gene06986.t1 | AT3G11930 | 39.264 | 163 | 85 | 4 | 10 | 159 | 35 | 196 | 4.54e-34 | 119 |
| MS.gene06986.t1 | AT3G11930 | 39.024 | 164 | 85 | 4 | 10 | 159 | 35 | 197 | 7.02e-34 | 118 |
| MS.gene06986.t1 | AT1G09740 | 42.767 | 159 | 80 | 4 | 10 | 159 | 10 | 166 | 6.91e-33 | 115 |
| MS.gene06986.t1 | AT1G09740 | 42.767 | 159 | 80 | 4 | 10 | 159 | 10 | 166 | 6.91e-33 | 115 |
| MS.gene06986.t1 | AT3G58450 | 39.103 | 156 | 84 | 5 | 11 | 159 | 33 | 184 | 6.23e-29 | 105 |
| MS.gene06986.t1 | AT3G11930 | 33.862 | 189 | 85 | 5 | 10 | 159 | 35 | 222 | 5.77e-28 | 103 |
| MS.gene06986.t1 | AT5G49050 | 45.833 | 120 | 62 | 3 | 1 | 119 | 33 | 150 | 1.25e-27 | 100 |
| MS.gene06986.t1 | AT3G58450 | 38.037 | 163 | 83 | 6 | 11 | 159 | 33 | 191 | 1.00e-26 | 100 |
| MS.gene06986.t1 | AT3G62550 | 38.323 | 167 | 83 | 6 | 1 | 157 | 1 | 157 | 2.90e-26 | 97.8 |
| MS.gene06986.t1 | AT1G68300 | 35.948 | 153 | 90 | 5 | 7 | 156 | 10 | 157 | 1.86e-22 | 88.2 |
Find 32 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCACCATGCTTCTATTT+TGG | 0.216579 | 7.3:-6304841 | MS.gene06986:CDS |
| TGAGATCAGTGTTTGGGTTT+TGG | 0.228710 | 7.3:+6304354 | None:intergenic |
| TCTACTAATGTTGGCTTCAT+AGG | 0.275135 | 7.3:-6305515 | MS.gene06986:CDS |
| TGAATGGACTCTGGATCATT+TGG | 0.356319 | 7.3:-6305597 | MS.gene06986:CDS |
| ACAAGAACAAGTTTGAAGAT+TGG | 0.363933 | 7.3:+6305557 | None:intergenic |
| GTTGTAGGTAGTCATGGTTA+TGG | 0.387360 | 7.3:-6304819 | MS.gene06986:CDS |
| TTAGCACATACGCTCTTGAA+TGG | 0.393024 | 7.3:-6305613 | MS.gene06986:CDS |
| AGCCAGTGAGATCAGTGTTT+GGG | 0.402587 | 7.3:+6304348 | None:intergenic |
| TTCAAATCGGCCTCCACAAT+AGG | 0.409491 | 7.3:+6305367 | None:intergenic |
| ATTAGTAGAAGGAGAAGGTT+TGG | 0.417086 | 7.3:+6305529 | None:intergenic |
| AACAAGTTTGAAGATTGGAT+TGG | 0.418326 | 7.3:+6305562 | None:intergenic |
| CAGCCAGTGAGATCAGTGTT+TGG | 0.432645 | 7.3:+6304347 | None:intergenic |
| TATTAAAATTACCGATCTCT+TGG | 0.443273 | 7.3:+6305300 | None:intergenic |
| ATGGTTATGGAGCTATAAAA+AGG | 0.449333 | 7.3:-6304806 | MS.gene06986:intron |
| ACAAGTTTGAAGATTGGATT+GGG | 0.449888 | 7.3:+6305563 | None:intergenic |
| CCTTCTCCTTCTACTAATGT+TGG | 0.462856 | 7.3:-6305524 | MS.gene06986:CDS |
| ATGAAGCCAACATTAGTAGA+AGG | 0.466396 | 7.3:+6305518 | None:intergenic |
| CGCTGAGATATTACCTATTG+TGG | 0.517301 | 7.3:-6305380 | MS.gene06986:CDS |
| ATACGCTCTTGAATGGACTC+TGG | 0.555617 | 7.3:-6305606 | MS.gene06986:CDS |
| AGACGTAGTAGTGGAAGTTG+TGG | 0.557524 | 7.3:-6304901 | MS.gene06986:CDS |
| GTAGTAGTGGAAGTTGTGGA+TGG | 0.560904 | 7.3:-6304897 | MS.gene06986:CDS |
| AGAAATCTGCACCAAGAGAT+CGG | 0.569017 | 7.3:-6305311 | MS.gene06986:intron |
| CCAACATTAGTAGAAGGAGA+AGG | 0.571033 | 7.3:+6305524 | None:intergenic |
| AATGTTGGCTTCATAGGCCC+TGG | 0.571494 | 7.3:-6305509 | MS.gene06986:intron |
| AAATGTTCTTTGTGATGCTG+TGG | 0.577056 | 7.3:-6304865 | MS.gene06986:CDS |
| GAGAAGCAAGTGATGGTGGT+CGG | 0.595765 | 7.3:-6305653 | MS.gene06986:CDS |
| TCAGGTAAAAGACGTAGTAG+TGG | 0.600049 | 7.3:-6304910 | MS.gene06986:intron |
| TTCAGAGAAGCAAGTGATGG+TGG | 0.623921 | 7.3:-6305657 | MS.gene06986:CDS |
| CTACAACCAAAATAGAAGCA+TGG | 0.624553 | 7.3:+6304835 | None:intergenic |
| AGTTTCAGAGAAGCAAGTGA+TGG | 0.653690 | 7.3:-6305660 | MS.gene06986:CDS |
| TGAGATATTACCTATTGTGG+AGG | 0.658611 | 7.3:-6305377 | MS.gene06986:CDS |
| CACAATAGGTAATATCTCAG+CGG | 0.686848 | 7.3:+6305381 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTTCTTTCATTAAATAA+AGG | + | chr7.3:6304949-6304968 | None:intergenic | 15.0% |
| !!! | TATTCTCTCATTTTTTATTT+TGG | - | chr7.3:6304748-6304767 | MS.gene06986:intron | 15.0% |
| !! | AATATATATACAAACATACC+AGG | + | chr7.3:6304539-6304558 | None:intergenic | 20.0% |
| !! | ATATATATACAAACATACCA+GGG | + | chr7.3:6304538-6304557 | None:intergenic | 20.0% |
| !! | TAACTTATTATCAATGTCAA+TGG | + | chr7.3:6305372-6305391 | None:intergenic | 20.0% |
| ! | AGTCTGATAAATACTTATAC+TGG | - | chr7.3:6305303-6305322 | MS.gene06986:intron | 25.0% |
| ! | TATTAAAATTACCGATCTCT+TGG | + | chr7.3:6304730-6304749 | None:intergenic | 25.0% |
| ! | TTGTAACAATGTTTATTCAG+CGG | - | chr7.3:6304620-6304639 | MS.gene06986:intron | 25.0% |
| !!! | ACTAGCTTTTTCTTTATATC+AGG | - | chr7.3:6305099-6305118 | MS.gene06986:intron | 25.0% |
| AACAAGTTTGAAGATTGGAT+TGG | + | chr7.3:6304468-6304487 | None:intergenic | 30.0% | |
| AATGCAATAGCATGATAACT+GGG | + | chr7.3:6305264-6305283 | None:intergenic | 30.0% | |
| ACAAGAACAAGTTTGAAGAT+TGG | + | chr7.3:6304473-6304492 | None:intergenic | 30.0% | |
| ACAAGTTTGAAGATTGGATT+GGG | + | chr7.3:6304467-6304486 | None:intergenic | 30.0% | |
| ACCAATATAATCTCAAACGT+AGG | - | chr7.3:6305516-6305535 | MS.gene06986:CDS | 30.0% | |
| ATACTGTGTATGCATACATA+TGG | - | chr7.3:6305064-6305083 | MS.gene06986:intron | 30.0% | |
| ATGGTTATGGAGCTATAAAA+AGG | - | chr7.3:6305221-6305240 | MS.gene06986:intron | 30.0% | |
| ATGTAACTTTGCATTTGCTT+AGG | + | chr7.3:6304985-6305004 | None:intergenic | 30.0% | |
| CCAATATAATCTCAAACGTA+GGG | - | chr7.3:6305517-6305536 | MS.gene06986:CDS | 30.0% | |
| TGAAACTGCATTTATTTGCA+GGG | - | chr7.3:6305582-6305601 | MS.gene06986:CDS | 30.0% | |
| TGTAACAATGTTTATTCAGC+GGG | - | chr7.3:6304621-6304640 | MS.gene06986:intron | 30.0% | |
| TTGAAACTGCATTTATTTGC+AGG | - | chr7.3:6305581-6305600 | MS.gene06986:CDS | 30.0% | |
| ! | AGTAGCAGTTCTTTTCAAAT+CGG | + | chr7.3:6304676-6304695 | None:intergenic | 30.0% |
| !! | GATTGGTGGAAAGTTATTTT+TGG | - | chr7.3:6304855-6304874 | MS.gene06986:CDS | 30.0% |
| !!! | GGAAAGTTATTTTTGGAGTT+TGG | - | chr7.3:6304862-6304881 | MS.gene06986:CDS | 30.0% |
| AAATGTTCTTTGTGATGCTG+TGG | - | chr7.3:6305162-6305181 | MS.gene06986:intron | 35.0% | |
| ATGAAGCCAACATTAGTAGA+AGG | + | chr7.3:6304512-6304531 | None:intergenic | 35.0% | |
| ATTAGTAGAAGGAGAAGGTT+TGG | + | chr7.3:6304501-6304520 | None:intergenic | 35.0% | |
| CAATGCAATAGCATGATAAC+TGG | + | chr7.3:6305265-6305284 | None:intergenic | 35.0% | |
| CACAATAGGTAATATCTCAG+CGG | + | chr7.3:6304649-6304668 | None:intergenic | 35.0% | |
| CATTGCGATAATAGCGTTAA+AGG | - | chr7.3:6305280-6305299 | MS.gene06986:intron | 35.0% | |
| CCTCTATATTCCTATGGATT+GGG | + | chr7.3:6304831-6304850 | None:intergenic | 35.0% | |
| CTACAACCAAAATAGAAGCA+TGG | + | chr7.3:6305195-6305214 | None:intergenic | 35.0% | |
| TCCTCTATATTCCTATGGAT+TGG | + | chr7.3:6304832-6304851 | None:intergenic | 35.0% | |
| TGAGATATTACCTATTGTGG+AGG | - | chr7.3:6304650-6304669 | MS.gene06986:intron | 35.0% | |
| TTGCATTTGCTTAGGAACTA+AGG | + | chr7.3:6304977-6304996 | None:intergenic | 35.0% | |
| ! | CCCTACGTTTGAGATTATAT+TGG | + | chr7.3:6305520-6305539 | None:intergenic | 35.0% |
| !! | TCTACTAATGTTGGCTTCAT+AGG | - | chr7.3:6304512-6304531 | MS.gene06986:intron | 35.0% |
| !! | TTTATTTGCAGGGCTGTTTT+AGG | - | chr7.3:6305592-6305611 | MS.gene06986:CDS | 35.0% |
| !!! | ATTTTGGTTGTAGGTAGTCA+TGG | - | chr7.3:6305202-6305221 | MS.gene06986:intron | 35.0% |
| !!! | CATGCTTCTATTTTGGTTGT+AGG | - | chr7.3:6305193-6305212 | MS.gene06986:intron | 35.0% |
| AGAAATCTGCACCAAGAGAT+CGG | - | chr7.3:6304716-6304735 | MS.gene06986:intron | 40.0% | |
| AGACTAATCTCCCAATCCAT+AGG | - | chr7.3:6304818-6304837 | MS.gene06986:CDS | 40.0% | |
| AGGAATATAGAGGAGTGGAT+TGG | - | chr7.3:6304838-6304857 | MS.gene06986:CDS | 40.0% | |
| AGTTTCAGAGAAGCAAGTGA+TGG | - | chr7.3:6304367-6304386 | MS.gene06986:CDS | 40.0% | |
| CCAACATTAGTAGAAGGAGA+AGG | + | chr7.3:6304506-6304525 | None:intergenic | 40.0% | |
| CCCAATCCATAGGAATATAG+AGG | - | chr7.3:6304828-6304847 | MS.gene06986:CDS | 40.0% | |
| CCTTCTCCTTCTACTAATGT+TGG | - | chr7.3:6304503-6304522 | MS.gene06986:intron | 40.0% | |
| CGCTGAGATATTACCTATTG+TGG | - | chr7.3:6304647-6304666 | MS.gene06986:intron | 40.0% | |
| GTTGTAGGTAGTCATGGTTA+TGG | - | chr7.3:6305208-6305227 | MS.gene06986:intron | 40.0% | |
| TAAAGGAAGAACAGAGCTAG+TGG | + | chr7.3:6304932-6304951 | None:intergenic | 40.0% | |
| TCAGGTAAAAGACGTAGTAG+TGG | - | chr7.3:6305117-6305136 | MS.gene06986:intron | 40.0% | |
| TCCACTCCTCTATATTCCTA+TGG | + | chr7.3:6304837-6304856 | None:intergenic | 40.0% | |
| TCCATAGGAATATAGAGGAG+TGG | - | chr7.3:6304833-6304852 | MS.gene06986:CDS | 40.0% | |
| TTAGCACATACGCTCTTGAA+TGG | - | chr7.3:6304414-6304433 | MS.gene06986:CDS | 40.0% | |
| ! | TGAATGGACTCTGGATCATT+TGG | - | chr7.3:6304430-6304449 | MS.gene06986:intron | 40.0% |
| !! | AATATAGAGGAGTGGATTGG+TGG | - | chr7.3:6304841-6304860 | MS.gene06986:CDS | 40.0% |
| !! | GAAGCACCATGCTTCTATTT+TGG | - | chr7.3:6305186-6305205 | MS.gene06986:intron | 40.0% |
| AAGAACAGAGCTAGTGGAAG+TGG | + | chr7.3:6304926-6304945 | None:intergenic | 45.0% | |
| ACACCTTCAACCTAAGGTGT+CGG | - | chr7.3:6305472-6305491 | MS.gene06986:intron | 45.0% | |
| ACACTCACAATGTCAGACAC+TGG | - | chr7.3:6305447-6305466 | MS.gene06986:intron | 45.0% | |
| TTCAAATCGGCCTCCACAAT+AGG | + | chr7.3:6304663-6304682 | None:intergenic | 45.0% | |
| TTCAGAGAAGCAAGTGATGG+TGG | - | chr7.3:6304370-6304389 | MS.gene06986:CDS | 45.0% | |
| ! | AGACGTAGTAGTGGAAGTTG+TGG | - | chr7.3:6305126-6305145 | MS.gene06986:intron | 45.0% |
| ! | ATACGCTCTTGAATGGACTC+TGG | - | chr7.3:6304421-6304440 | MS.gene06986:CDS | 45.0% |
| ! | GTAGTAGTGGAAGTTGTGGA+TGG | - | chr7.3:6305130-6305149 | MS.gene06986:intron | 45.0% |
| CTGGACACACCTTCAACCTA+AGG | - | chr7.3:6305466-6305485 | MS.gene06986:intron | 50.0% | |
| !! | AATGTTGGCTTCATAGGCCC+TGG | - | chr7.3:6304518-6304537 | MS.gene06986:intron | 50.0% |
| !! | GAGAAGCAAGTGATGGTGGT+CGG | - | chr7.3:6304374-6304393 | MS.gene06986:CDS | 50.0% |
| !! | GCACCGACACCTTAGGTTGA+AGG | + | chr7.3:6305478-6305497 | None:intergenic | 55.0% |
| !! | GTACGTAGCACCGACACCTT+AGG | + | chr7.3:6305485-6305504 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6304359 | 6305690 | 6304359 | ID=MS.gene06986 |
| chr7.3 | mRNA | 6304359 | 6305690 | 6304359 | ID=MS.gene06986.t1;Parent=MS.gene06986 |
| chr7.3 | exon | 6305510 | 6305690 | 6305510 | ID=MS.gene06986.t1.exon1;Parent=MS.gene06986.t1 |
| chr7.3 | CDS | 6305510 | 6305690 | 6305510 | ID=cds.MS.gene06986.t1;Parent=MS.gene06986.t1 |
| chr7.3 | exon | 6305312 | 6305409 | 6305312 | ID=MS.gene06986.t1.exon2;Parent=MS.gene06986.t1 |
| chr7.3 | CDS | 6305312 | 6305409 | 6305312 | ID=cds.MS.gene06986.t1;Parent=MS.gene06986.t1 |
| chr7.3 | exon | 6304807 | 6304928 | 6304807 | ID=MS.gene06986.t1.exon3;Parent=MS.gene06986.t1 |
| chr7.3 | CDS | 6304807 | 6304928 | 6304807 | ID=cds.MS.gene06986.t1;Parent=MS.gene06986.t1 |
| chr7.3 | exon | 6304359 | 6304446 | 6304359 | ID=MS.gene06986.t1.exon4;Parent=MS.gene06986.t1 |
| chr7.3 | CDS | 6304359 | 6304446 | 6304359 | ID=cds.MS.gene06986.t1;Parent=MS.gene06986.t1 |
| Gene Sequence |
| Protein sequence |
