AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037817

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037817.t1 MTR_8g074040 90.115 607 27 1 1 574 1 607 0.0 1132
MS.gene037817.t1 MTR_8g074040 94.888 489 25 0 86 574 1 489 0.0 973
MS.gene037817.t1 MTR_8g074120 80.561 499 95 1 76 574 20 516 0.0 863
MS.gene037817.t1 MTR_5g008800 60.550 545 180 2 43 554 1 543 0.0 718
MS.gene037817.t1 MTR_5g008820 57.353 544 195 3 43 553 1 540 0.0 686
MS.gene037817.t1 MTR_4g121600 48.845 563 244 5 38 556 2 564 0.0 572
MS.gene037817.t1 MTR_2g044180 48.364 550 240 5 51 556 15 564 0.0 555
MS.gene037817.t1 MTR_3g064420 47.748 555 241 5 43 550 1 553 0.0 546
MS.gene037817.t1 MTR_5g076240 48.294 557 235 8 43 553 1 550 0.0 534
MS.gene037817.t1 MTR_2g044180 50.529 473 223 4 95 556 1 473 8.37e-180 516
MS.gene037817.t1 MTR_5g076200 47.957 563 239 9 43 558 1 556 1.88e-176 511
MS.gene037817.t1 MTR_5g076220 48.294 557 234 9 43 552 1 550 1.44e-175 508
MS.gene037817.t1 MTR_0161s0050 47.764 559 240 9 43 554 1 554 3.24e-171 498
MS.gene037817.t1 MTR_5g023730 45.719 549 250 9 44 551 3 544 1.41e-160 470
MS.gene037817.t1 MTR_0803s0020 32.777 479 295 11 67 539 279 736 8.04e-61 218
MS.gene037817.t1 MTR_1g026310 27.291 491 315 12 66 540 85 549 2.46e-44 166
MS.gene037817.t1 MTR_1569s0010 33.524 349 221 7 199 544 188 528 1.72e-43 163
MS.gene037817.t1 MTR_8g039720 26.946 501 306 15 66 540 82 548 3.23e-42 160
MS.gene037817.t1 MTR_2g095510 27.075 506 305 15 67 549 73 537 5.40e-39 150
MS.gene037817.t1 MTR_3g035130 26.916 509 332 13 46 545 32 509 3.10e-38 148
MS.gene037817.t1 MTR_3g460770 25.407 492 324 13 68 546 75 536 5.14e-38 148
MS.gene037817.t1 MTR_4g077900 26.411 496 316 14 67 544 7 471 2.53e-36 142
MS.gene037817.t1 MTR_2g105570 28.056 499 320 17 67 549 72 547 3.05e-36 142
MS.gene037817.t1 MTR_1g090737 26.400 500 310 14 68 548 103 563 7.64e-35 139
MS.gene037817.t1 MTR_5g027500 27.092 502 317 16 67 545 87 562 8.73e-35 139
MS.gene037817.t1 MTR_1g063110 27.778 504 292 15 68 540 75 537 3.55e-34 137
MS.gene037817.t1 MTR_3g088870 26.714 423 271 10 144 552 162 559 6.44e-34 136
MS.gene037817.t1 MTR_4g057730 25.646 503 317 13 68 549 74 540 2.84e-33 134
MS.gene037817.t1 MTR_3g088880 27.540 374 245 9 190 552 199 557 5.80e-33 133
MS.gene037817.t1 MTR_1g073180 26.923 546 327 13 22 546 35 529 6.91e-33 132
MS.gene037817.t1 MTR_4g005750 27.435 503 312 19 67 549 71 540 1.29e-31 129
MS.gene037817.t1 MTR_1g063120 28.226 496 302 17 69 540 76 541 1.71e-31 129
MS.gene037817.t1 MTR_5g007640 25.847 561 336 18 22 549 72 585 1.77e-31 129
MS.gene037817.t1 MTR_5g027480 28.831 385 231 14 184 545 185 549 2.96e-30 125
MS.gene037817.t1 MTR_3g035130 26.362 459 301 10 46 497 32 460 2.33e-29 121
MS.gene037817.t1 MTR_1586s0010 27.557 352 222 10 68 405 89 421 3.12e-29 120
MS.gene037817.t1 MTR_1g073180 26.426 526 316 12 22 527 57 531 7.17e-29 120
MS.gene037817.t1 MTR_4g128337 24.194 496 317 15 68 540 78 537 4.57e-25 109
MS.gene037817.t1 MTR_2g030240 25.095 526 321 17 67 547 46 543 5.97e-25 109
MS.gene037817.t1 MTR_2g095510 26.716 408 236 14 67 452 73 439 2.06e-23 103
MS.gene037817.t1 MTR_4g057730 25.115 434 269 12 67 480 73 470 2.29e-23 103
MS.gene037817.t1 MTR_4g011790 25.831 391 236 12 189 545 223 593 5.47e-23 103
MS.gene037817.t1 MTR_4g011790 25.707 389 235 12 189 543 223 591 1.65e-22 102
MS.gene037817.t1 MTR_7g084850 27.123 424 231 19 191 567 352 744 4.42e-22 101
MS.gene037817.t1 MTR_2g030240 26.633 398 233 14 192 547 69 449 8.92e-22 99.0
MS.gene037817.t1 MTR_4g011790 25.250 400 236 12 189 545 223 602 9.89e-22 99.8
MS.gene037817.t1 MTR_7g109830 23.932 468 272 16 69 474 97 542 1.00e-21 99.8
MS.gene037817.t1 MTR_1054s0020 24.538 595 334 26 1 550 247 771 1.90e-20 96.3
MS.gene037817.t1 MTR_4g013210 25.313 399 232 14 189 545 66 440 5.45e-19 90.1
MS.gene037817.t1 MTR_1g086600 23.667 469 274 15 69 474 119 566 1.02e-18 90.5
MS.gene037817.t1 MTR_1g034360 23.340 467 275 16 69 474 99 543 2.79e-18 89.0
MS.gene037817.t1 MTR_4g057730 23.227 409 272 10 68 463 74 453 4.68e-18 87.4
MS.gene037817.t1 MTR_4g013210 24.603 378 220 14 189 545 66 399 1.42e-17 85.5
MS.gene037817.t1 MTR_4g013210 24.603 378 220 14 189 545 218 551 1.50e-17 86.3
MS.gene037817.t1 MTR_8g099420 24.948 485 272 19 69 487 100 558 1.17e-16 84.0
MS.gene037817.t1 MTR_4g013210 26.036 338 195 11 189 495 218 531 9.22e-15 77.8
MS.gene037817.t1 MTR_1g026430 25.338 296 193 7 66 347 85 366 2.34e-14 75.9
MS.gene037817.t1 MTR_5g009350 24.183 459 251 18 103 493 133 562 2.52e-14 76.3
MS.gene037817.t1 MTR_4g068670 23.028 469 273 17 69 474 98 541 2.69e-14 76.3
MS.gene037817.t1 MTR_5g009350 24.609 447 241 17 103 481 133 551 3.14e-14 75.9
MS.gene037817.t1 MTR_1g026470 25.676 296 192 7 66 347 85 366 3.34e-14 75.1
MS.gene037817.t1 MTR_5g009360 24.605 443 232 19 103 474 7 418 3.38e-14 75.9
MS.gene037817.t1 MTR_5g009350 24.545 440 236 17 103 474 133 544 4.63e-14 75.5
MS.gene037817.t1 MTR_5g009350 24.545 440 236 17 103 474 133 544 4.76e-14 75.5
MS.gene037817.t1 MTR_5g009360 24.831 443 231 19 103 474 133 544 5.71e-14 75.5
MS.gene037817.t1 MTR_8g083170 29.767 215 115 8 312 514 457 647 5.35e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037817.t1 AT2G17650 65.026 569 154 4 30 553 35 603 0.0 751
MS.gene037817.t1 AT1G20560 59.049 547 189 2 43 554 3 549 0.0 686
MS.gene037817.t1 AT1G20560 62.420 471 175 1 86 554 1 471 0.0 643
MS.gene037817.t1 AT5G16340 49.910 555 232 6 43 556 1 550 0.0 551
MS.gene037817.t1 AT3G16910 48.043 562 247 6 40 556 6 567 0.0 549
MS.gene037817.t1 AT5G16370 49.730 555 233 6 43 556 1 550 0.0 546
MS.gene037817.t1 AT1G66120 48.182 550 241 6 43 550 1 548 0.0 530
MS.gene037817.t1 AT1G76290 47.715 547 243 5 43 553 1 540 1.88e-177 513
MS.gene037817.t1 AT1G21540 47.748 555 237 8 43 550 1 549 6.80e-177 511
MS.gene037817.t1 AT1G21530 46.751 554 243 7 43 550 1 548 8.55e-176 508
MS.gene037817.t1 AT1G75960 48.270 549 238 7 43 550 1 544 1.29e-174 505
MS.gene037817.t1 AT1G21530 46.570 554 242 8 43 550 1 546 1.09e-173 503
MS.gene037817.t1 AT1G65890 45.893 560 246 7 43 550 1 555 1.27e-172 501
MS.gene037817.t1 AT1G65880 45.161 558 254 6 43 550 1 556 6.46e-172 500
MS.gene037817.t1 AT1G77240 46.898 548 247 7 43 550 1 544 1.14e-171 498
MS.gene037817.t1 AT1G68270 41.906 556 244 9 43 550 1 525 5.78e-142 422
MS.gene037817.t1 AT1G20500 27.160 486 307 13 67 537 83 536 7.76e-42 159
MS.gene037817.t1 AT5G63380 28.067 481 308 11 74 547 105 554 1.44e-39 152
MS.gene037817.t1 AT1G20510 26.538 520 313 16 40 540 64 533 8.10e-39 150
MS.gene037817.t1 AT4G05160 26.535 505 314 13 67 549 73 542 2.25e-38 149
MS.gene037817.t1 AT3G48990 28.144 501 315 16 60 545 38 508 1.31e-36 143
MS.gene037817.t1 AT3G21240 26.815 496 317 13 68 546 83 549 7.24e-36 142
MS.gene037817.t1 AT1G20480 25.800 500 321 14 62 540 84 554 3.34e-35 140
MS.gene037817.t1 AT3G21230 27.944 501 323 13 67 552 92 569 6.75e-35 139
MS.gene037817.t1 AT4G19010 25.825 515 318 18 68 559 93 566 9.37e-34 135
MS.gene037817.t1 AT1G62940 26.273 491 322 15 68 546 73 535 1.46e-33 135
MS.gene037817.t1 AT5G38120 27.105 487 303 15 68 537 85 536 9.68e-32 129
MS.gene037817.t1 AT1G20510 26.144 459 271 15 40 480 64 472 1.13e-29 122
MS.gene037817.t1 AT1G51680 25.703 498 327 14 67 546 84 556 1.62e-29 123
MS.gene037817.t1 AT3G21230 27.155 464 301 12 67 516 92 532 2.62e-28 119
MS.gene037817.t1 AT3G21240 26.744 430 270 12 68 481 83 483 1.03e-27 117
MS.gene037817.t1 AT3G21240 26.744 430 270 12 68 481 83 483 1.03e-27 117
MS.gene037817.t1 AT1G65060 23.790 496 332 11 67 546 94 559 1.79e-27 117
MS.gene037817.t1 AT5G38120 26.452 465 291 14 68 516 85 514 2.54e-27 116
MS.gene037817.t1 AT1G51680 25.566 442 295 12 67 495 84 504 2.50e-25 110
MS.gene037817.t1 AT3G21230 28.205 429 271 12 67 481 92 497 4.54e-25 109
MS.gene037817.t1 AT1G30520 24.226 549 318 20 67 557 51 559 1.09e-24 108
MS.gene037817.t1 AT1G30520 24.226 549 318 20 67 557 51 559 1.09e-24 108
MS.gene037817.t1 AT1G20510 25.754 431 252 15 40 452 64 444 2.14e-23 103
MS.gene037817.t1 AT5G38120 26.168 428 267 13 68 480 85 478 2.30e-22 100
MS.gene037817.t1 AT5G38120 26.168 428 267 13 68 480 85 478 2.30e-22 100
MS.gene037817.t1 AT1G51680 25.467 428 285 12 67 481 84 490 2.71e-22 100
MS.gene037817.t1 AT2G47240 24.288 527 279 20 64 499 35 532 3.78e-21 97.8
MS.gene037817.t1 AT2G47240 24.335 526 280 18 64 499 94 591 6.70e-21 97.4
MS.gene037817.t1 AT2G47240 24.335 526 280 18 64 499 94 591 6.70e-21 97.4
MS.gene037817.t1 AT2G47240 24.335 526 280 18 64 499 94 591 6.70e-21 97.4
MS.gene037817.t1 AT5G36880 24.532 587 341 24 47 567 135 685 4.07e-20 95.1
MS.gene037817.t1 AT5G36880 24.532 587 341 24 47 567 135 685 4.07e-20 95.1
MS.gene037817.t1 AT5G36880 24.532 587 341 24 47 567 135 685 4.07e-20 95.1
MS.gene037817.t1 AT5G36880 24.532 587 341 24 47 567 135 685 4.07e-20 95.1
MS.gene037817.t1 AT5G36880 24.605 569 331 22 61 567 203 735 5.03e-20 94.7
MS.gene037817.t1 AT1G64400 24.059 478 266 18 68 477 99 547 1.03e-17 87.4
MS.gene037817.t1 AT1G20490 25.526 380 233 12 67 429 83 429 1.73e-16 82.8
MS.gene037817.t1 AT1G20490 25.526 380 233 12 67 429 83 429 1.73e-16 82.8
MS.gene037817.t1 AT1G49430 24.490 343 182 11 193 476 224 548 3.10e-15 79.3
MS.gene037817.t1 AT1G30520 23.620 453 260 18 67 476 51 460 3.37e-14 75.5
MS.gene037817.t1 AT1G30520 23.620 453 260 18 67 476 51 460 3.37e-14 75.5
MS.gene037817.t1 AT4G11030 26.146 371 182 18 171 477 205 547 3.43e-13 72.8
MS.gene037817.t1 AT5G36880 23.589 496 283 20 47 481 135 595 2.47e-12 70.1
MS.gene037817.t1 AT1G77590 25.000 352 176 13 193 474 100 433 3.97e-12 69.3
MS.gene037817.t1 AT1G77590 25.000 352 176 13 193 474 246 579 5.37e-12 69.3

Find 141 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTCACCTATCAATTTCT+TGG 0.211315 8.2:-30637540 MS.gene037817:CDS
TGTTAAAGATTCTGCTACTA+TGG 0.215289 8.2:-30635426 MS.gene037817:CDS
CTGCGTCTAAACGTGAATTA+AGG 0.255040 8.2:+30636263 None:intergenic
ACATCTTTCCTGTTTATCTT+TGG 0.256071 8.2:-30635877 MS.gene037817:CDS
TTGATTGCTCAAGTAAGTTT+AGG 0.260515 8.2:-30634872 MS.gene037817:CDS
ATCTTACCTGTTGAAGTCTT+TGG 0.261180 8.2:+30634978 None:intergenic
CTTTCCAAGATGGAAGAAAT+TGG 0.264840 8.2:-30635602 MS.gene037817:CDS
TTGGAACAAATATTTGTCTA+AGG 0.272824 8.2:-30635796 MS.gene037817:CDS
TTGAAGGATATAATAATATC+TGG 0.283767 8.2:-30635227 MS.gene037817:CDS
TCAGTAACTAAGACTATAAT+TGG 0.295820 8.2:+30636124 None:intergenic
AAAACCAATTTCTTCCATCT+TGG 0.317177 8.2:+30635598 None:intergenic
TGATTGCTCAAGTAAGTTTA+GGG 0.331155 8.2:-30634871 MS.gene037817:CDS
TGGGGAGTAGCAGCACAATT+TGG 0.331468 8.2:-30635815 MS.gene037817:CDS
GGAGGCAATGTGTCCCATTC+AGG 0.340063 8.2:+30635512 None:intergenic
TGCCCGGCCGGATGATCATT+GGG 0.342377 8.2:-30635129 MS.gene037817:CDS
AGATACAAAAGTATATTCTA+AGG 0.349253 8.2:-30634959 MS.gene037817:CDS
TAACGGTTGGTGTCTCCCTT+GGG 0.360859 8.2:-30635834 MS.gene037817:CDS
AAGGGAGAAAGCCAAGGCTT+TGG 0.366184 8.2:-30634940 MS.gene037817:CDS
GAGGTGTAATTTATACTTAT+AGG 0.373028 8.2:+30635989 None:intergenic
TTCATCTTCGATCTATCTTC+AGG 0.373461 8.2:+30635491 None:intergenic
TCATACATTGCAGGGACATT+AGG 0.376737 8.2:+30636328 None:intergenic
TTGCCCGGCCGGATGATCAT+TGG 0.377948 8.2:-30635130 MS.gene037817:CDS
CAACTACTTGAAATTGTTCA+AGG 0.388634 8.2:-30636184 MS.gene037817:CDS
AGTTTAGATAAGCACCTCTA+TGG 0.391742 8.2:+30635930 None:intergenic
TGGCTGTAGACAACTCCTTT+AGG 0.394653 8.2:+30635950 None:intergenic
ATAGGATCCCATTCACTTTG+TGG 0.397745 8.2:+30636007 None:intergenic
GTAACGGTTGGTGTCTCCCT+TGG 0.401622 8.2:-30635835 MS.gene037817:CDS
TGCGTCTAAACGTGAATTAA+GGG 0.406587 8.2:+30636264 None:intergenic
AGGGAGAAAGCCAAGGCTTT+GGG 0.413494 8.2:-30634939 MS.gene037817:CDS
TAATAGAAGTTGGGCATAAC+GGG 0.417435 8.2:-30636045 MS.gene037817:CDS
GGAACATTCCAAAGATAAAC+AGG 0.421281 8.2:+30635869 None:intergenic
TGACAACATAATTCAGCATA+AGG 0.422148 8.2:-30635750 MS.gene037817:CDS
GATCTTGAAGATGTTGTTCA+TGG 0.424492 8.2:+30637706 None:intergenic
GTAGTTGATAGTCTGCAAAA+AGG 0.431822 8.2:+30636200 None:intergenic
GATATGCCAAAGACTTCAAC+AGG 0.435736 8.2:-30634984 MS.gene037817:CDS
AACAGTTCTACTCTTTCAAA+TGG 0.436859 8.2:-30635900 MS.gene037817:CDS
GATTCCCATGATCCTCGATC+AGG 0.438903 8.2:+30637602 None:intergenic
TGATGGCTACATTGAAGTTA+AGG 0.439022 8.2:-30635255 MS.gene037817:CDS
TATGAGAAGCTAATAGAAGT+TGG 0.440482 8.2:-30636055 MS.gene037817:CDS
TTGAGGCTGCAGTAGTTGCC+CGG 0.441780 8.2:-30635145 MS.gene037817:CDS
TTCGTAACTCGTTGATGTAA+TGG 0.443548 8.2:+30636078 None:intergenic
CGTTGTTCCATTGTAACGGT+TGG 0.445064 8.2:-30635847 MS.gene037817:CDS
GCTCTCTCCAAGAAATTGAT+AGG 0.445103 8.2:+30637533 None:intergenic
ACATCTTCAAGATCATGCTT+TGG 0.448016 8.2:-30637697 MS.gene037817:CDS
TAGTGAAGCCACAAAGTGAA+TGG 0.448098 8.2:-30636015 MS.gene037817:CDS
TGAAGGATATAATAATATCT+GGG 0.456431 8.2:-30635226 MS.gene037817:CDS
GTTGGCGAGATAATGTTTAG+AGG 0.461622 8.2:-30635377 MS.gene037817:CDS
AAGACGGTTGGTTTCATAGT+GGG 0.468317 8.2:-30635298 MS.gene037817:CDS
TGAATTAAGGGTACAAAGAA+TGG 0.469384 8.2:+30636276 None:intergenic
TGAAATTGTTCAAGGAGCAT+TGG 0.470769 8.2:-30636176 MS.gene037817:CDS
TGTGGTGGGTTGATCTGAAG+TGG 0.473456 8.2:+30637660 None:intergenic
CTAATAGAAGTTGGGCATAA+CGG 0.475017 8.2:-30636046 MS.gene037817:CDS
AAATGCAGCTCATACATTGC+AGG 0.475944 8.2:+30636319 None:intergenic
GGCTGCAGTAGTTGCCCGGC+CGG 0.476236 8.2:-30635141 MS.gene037817:CDS
TGAAGTTAAGGATAGATTGA+AGG 0.489316 8.2:-30635243 MS.gene037817:CDS
TTGACAGAAACGTACGGTCC+GGG 0.489607 8.2:-30635554 MS.gene037817:CDS
TGGACCCTGATCGAGGATCA+TGG 0.491101 8.2:-30637607 MS.gene037817:CDS
GTTTGAGAATTTACGTGAGA+AGG 0.492230 8.2:+30637637 None:intergenic
TTGGAAAGAATCTGCGGCGG+TGG 0.493138 8.2:+30635617 None:intergenic
ATGAGAAGCTAATAGAAGTT+GGG 0.497621 8.2:-30636054 MS.gene037817:CDS
AGGCAAACGTTCCCTACAAA+AGG 0.497964 8.2:+30635040 None:intergenic
GAAAGAATCTGCGGCGGTGG+AGG 0.498335 8.2:+30635620 None:intergenic
GCCGCAGATTCTTTCCAAGA+TGG 0.503569 8.2:-30635612 MS.gene037817:CDS
TGTTCCACATGTGGCATTGG+AGG 0.506794 8.2:-30635456 MS.gene037817:CDS
TTGTGCGTGGAGACCTGAAT+GGG 0.513038 8.2:-30635525 MS.gene037817:CDS
CAAAGAATGGCTCCAGCCAT+TGG 0.516988 8.2:+30636289 None:intergenic
AGTGAAGCCACAAAGTGAAT+GGG 0.517210 8.2:-30636014 MS.gene037817:CDS
GTTTGACCCCAATGATCATC+CGG 0.518947 8.2:+30635122 None:intergenic
GACCCCAATGATCATCCGGC+CGG 0.519096 8.2:+30635126 None:intergenic
TTTAGTGTTTCACACCTCTA+CGG 0.519830 8.2:-30635578 MS.gene037817:CDS
CATTTCGCAGTACCAATGGC+TGG 0.521714 8.2:-30636301 MS.gene037817:CDS
ATAGATCGAAGATGAAAGCT+AGG 0.522512 8.2:-30635484 MS.gene037817:CDS
AGATATACTTCCCAAAGCCT+TGG 0.523261 8.2:+30634929 None:intergenic
TCGAGGATCATGGGAATCAA+TGG 0.525623 8.2:-30637597 MS.gene037817:CDS
TTCACGTTTAGACGCAGCTA+TGG 0.527995 8.2:-30636257 MS.gene037817:CDS
AGGTGTTCCACATGTGGCAT+TGG 0.528910 8.2:-30635459 MS.gene037817:CDS
GTGGTGGGTTGATCTGAAGT+GGG 0.531074 8.2:+30637661 None:intergenic
AATTGTGCTGCTACTCCCCA+AGG 0.538317 8.2:+30635818 None:intergenic
GGACCCTGATCGAGGATCAT+GGG 0.538947 8.2:-30637606 MS.gene037817:CDS
AAGAAGCTTTCAAAGACGGT+TGG 0.539313 8.2:-30635310 MS.gene037817:CDS
AAAGACGGTTGGTTTCATAG+TGG 0.542816 8.2:-30635299 MS.gene037817:CDS
GTTCCGTTGTTCCATTGTAA+CGG 0.543334 8.2:-30635851 MS.gene037817:CDS
ATAAGTATAAATTACACCTC+AGG 0.544690 8.2:-30635986 MS.gene037817:CDS
AGAATCATGTTAAGCACTGT+AGG 0.544967 8.2:+30635707 None:intergenic
CTTGACAGAAACGTACGGTC+CGG 0.546972 8.2:-30635555 MS.gene037817:CDS
TAGTCATCCGGCTGTTCTTG+AGG 0.550756 8.2:-30635162 MS.gene037817:CDS
ACCCCAATGATCATCCGGCC+GGG 0.552569 8.2:+30635127 None:intergenic
GGAACCACATCAAGACCTAA+AGG 0.555101 8.2:-30635965 MS.gene037817:CDS
TTTCTTGGAGAGAGCAGCAA+AGG 0.556171 8.2:-30637525 MS.gene037817:intron
GGAACGTTTGCCTCACTACA+TGG 0.557015 8.2:-30635030 MS.gene037817:CDS
AGGTCTTGATGTGGTTCCTG+AGG 0.568782 8.2:+30635970 None:intergenic
AGAAAACATTAGCTCGGTCG+AGG 0.571304 8.2:-30635201 MS.gene037817:CDS
TTGGCGAGATAATGTTTAGA+GGG 0.571382 8.2:-30635376 MS.gene037817:CDS
TTTGTGCGTGGAGACCTGAA+TGG 0.574282 8.2:-30635526 MS.gene037817:CDS
ACAGAAGAAGCTTTCAAAGA+CGG 0.574932 8.2:-30635314 MS.gene037817:CDS
AGGGATTTCCCGTGGAGATG+TGG 0.577445 8.2:-30637402 MS.gene037817:intron
CACAGCTCACCACATCTCCA+CGG 0.579071 8.2:+30637393 None:intergenic
ATGGAAAGTGTTCCAGCTGA+CGG 0.581881 8.2:-30635407 MS.gene037817:CDS
ACTGCAGCCTCAAGAACAGC+CGG 0.582629 8.2:+30635155 None:intergenic
ACTAAAACCTTGTGATTGAG+TGG 0.583931 8.2:+30635659 None:intergenic
ACAAAGGAACAGAGTTTGCA+TGG 0.584294 8.2:+30637558 None:intergenic
ACGTTTCTGTCAAGCCGTAG+AGG 0.586594 8.2:+30635564 None:intergenic
ATCTTCGATCTATCTTCAGG+AGG 0.587113 8.2:+30635494 None:intergenic
GATACAAAAGTATATTCTAA+GGG 0.589675 8.2:-30634958 MS.gene037817:CDS
AACGGTTGGTGTCTCCCTTG+GGG 0.591004 8.2:-30635833 MS.gene037817:CDS
ATTCCCATGATCCTCGATCA+GGG 0.594502 8.2:+30637603 None:intergenic
GGAGACACCAACCGTTACAA+TGG 0.594634 8.2:+30635840 None:intergenic
AGACGGTTGGTTTCATAGTG+GGG 0.597730 8.2:-30635297 MS.gene037817:CDS
GGAGTTGTCTACAGCCATAG+AGG 0.598094 8.2:-30635944 MS.gene037817:CDS
GGATCATGGGAATCAATGGA+AGG 0.598769 8.2:-30637593 MS.gene037817:CDS
GCTGCATTTCGCAGTACCAA+TGG 0.599815 8.2:-30636305 MS.gene037817:CDS
AAGAAATTGATAGGTGACAA+AGG 0.602595 8.2:+30637542 None:intergenic
AGGGACATTAGGTGCTAATG+TGG 0.602955 8.2:+30636339 None:intergenic
AATGCAGCTCATACATTGCA+GGG 0.604689 8.2:+30636320 None:intergenic
AGAATTTACGTGAGAAGGTG+TGG 0.607162 8.2:+30637642 None:intergenic
CTAGCTGTGAAACACGCTGA+TGG 0.608624 8.2:-30635272 MS.gene037817:CDS
GAAGGATATAATAATATCTG+GGG 0.608654 8.2:-30635225 MS.gene037817:CDS
ACAGCTCACCACATCTCCAC+GGG 0.608729 8.2:+30637394 None:intergenic
TTTACGTGAGAAGGTGTGGT+GGG 0.610369 8.2:+30637646 None:intergenic
TGACAGAAACGTACGGTCCG+GGG 0.611856 8.2:-30635553 MS.gene037817:CDS
ATTTCCTCCAATGCCACATG+TGG 0.612307 8.2:+30635452 None:intergenic
AACTCCTTTAGGTCTTGATG+TGG 0.612702 8.2:+30635961 None:intergenic
TCAGCATAAGGTGACACACA+TGG 0.617333 8.2:-30635738 MS.gene037817:CDS
TCCATCTTGGAAAGAATCTG+CGG 0.617449 8.2:+30635611 None:intergenic
TAGGCAAGGTGTTCCACATG+TGG 0.619834 8.2:-30635465 MS.gene037817:CDS
ATTTACGTGAGAAGGTGTGG+TGG 0.623936 8.2:+30637645 None:intergenic
CAGCATAAGGTGACACACAT+GGG 0.635328 8.2:-30635737 MS.gene037817:CDS
TATTCTAAGGGAGAAAGCCA+AGG 0.641157 8.2:-30634946 MS.gene037817:CDS
ATGTTGTCAAATATGTTCTG+TGG 0.641889 8.2:+30635764 None:intergenic
GATCATGGGAATCAATGGAA+GGG 0.644377 8.2:-30637592 MS.gene037817:CDS
AGAGGGAATACAGTGATGAG+TGG 0.648241 8.2:-30635359 MS.gene037817:CDS
ATTGTGCTGCTACTCCCCAA+GGG 0.658501 8.2:+30635819 None:intergenic
GCCCGGCCGGATGATCATTG+GGG 0.659512 8.2:-30635128 MS.gene037817:CDS
TACGGCTTGACAGAAACGTA+CGG 0.665460 8.2:-30635560 MS.gene037817:CDS
TAGAAAGCCACTCAATCACA+AGG 0.673527 8.2:-30635666 MS.gene037817:CDS
TCGAAGATGAAAGCTAGGCA+AGG 0.673733 8.2:-30635479 MS.gene037817:CDS
ACCCAGTTAGGGATTTCCCG+TGG 0.675926 8.2:-30637410 MS.gene037817:intron
CAACCGTTACAATGGAACAA+CGG 0.684490 8.2:+30635848 None:intergenic
AAGGATATAATAATATCTGG+GGG 0.684665 8.2:-30635224 MS.gene037817:CDS
CATAAGGTGACACACATGGG+AGG 0.698519 8.2:-30635734 MS.gene037817:CDS
ATCTTGGAAAGAATCTGCGG+CGG 0.711902 8.2:+30635614 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTGCTTATGAACTTT+AGG - chr8.2:30636058-30636077 MS.gene037817:CDS 20.0%
!! GGAAAAAACTAAACTAAATT+CGG + chr8.2:30636154-30636173 None:intergenic 20.0%
!! GGAAAATTTAGATTATACAT+TGG - chr8.2:30635697-30635716 MS.gene037817:CDS 20.0%
!! GGTAATGTAAACTTATTATA+CGG - chr8.2:30635549-30635568 MS.gene037817:CDS 20.0%
!! TGAAGGATATAATAATATCT+GGG - chr8.2:30637344-30637363 MS.gene037817:intron 20.0%
!! TTGAAGGATATAATAATATC+TGG - chr8.2:30637343-30637362 MS.gene037817:intron 20.0%
!!! AGATACAAAAGTATATTCTA+AGG - chr8.2:30637611-30637630 MS.gene037817:CDS 20.0%
!!! ATTTTACTTTGACAATGTTT+CGG - chr8.2:30635230-30635249 MS.gene037817:CDS 20.0%
!!! GATACAAAAGTATATTCTAA+GGG - chr8.2:30637612-30637631 MS.gene037817:CDS 20.0%
!!! TAAATTCTCAAACTTTTCTA+TGG - chr8.2:30634943-30634962 MS.gene037817:CDS 20.0%
! AAGGATATAATAATATCTGG+GGG - chr8.2:30637346-30637365 MS.gene037817:intron 25.0%
! ATAAGTATAAATTACACCTC+AGG - chr8.2:30636584-30636603 MS.gene037817:intron 25.0%
! ATATTTATGTAAGCGCTATA+AGG + chr8.2:30635409-30635428 None:intergenic 25.0%
! GAAGGATATAATAATATCTG+GGG - chr8.2:30637345-30637364 MS.gene037817:intron 25.0%
! GAGGTGTAATTTATACTTAT+AGG + chr8.2:30636584-30636603 None:intergenic 25.0%
! GTTAATAATAAGCGCTATTA+TGG + chr8.2:30635385-30635404 None:intergenic 25.0%
! TCAGTAACTAAGACTATAAT+TGG + chr8.2:30636449-30636468 None:intergenic 25.0%
! TCTGCTACTATTAAATTCTA+AGG - chr8.2:30636101-30636120 MS.gene037817:CDS 25.0%
! TGTGCTATAATTAGGATTAT+AGG - chr8.2:30635822-30635841 MS.gene037817:CDS 25.0%
! TTGGAACAAATATTTGTCTA+AGG - chr8.2:30636774-30636793 MS.gene037817:intron 25.0%
!! AACAGATTTTTCACAATTCA+AGG + chr8.2:30637677-30637696 None:intergenic 25.0%
!! ACAGATTTTTCACAATTCAA+GGG + chr8.2:30637676-30637695 None:intergenic 25.0%
!! TCTAGAAAAATGACTGTTTT+AGG + chr8.2:30637568-30637587 None:intergenic 25.0%
!!! ATGGTTCTTTGAAGTATAAT+TGG - chr8.2:30635095-30635114 MS.gene037817:CDS 25.0%
!!! TGGTTCTTTGAAGTATAATT+GGG - chr8.2:30635096-30635115 MS.gene037817:CDS 25.0%
!!! TTCATTTGTTTTTCTGTTAC+TGG + chr8.2:30636030-30636049 None:intergenic 25.0%
AAAACCAATTTCTTCCATCT+TGG + chr8.2:30636975-30636994 None:intergenic 30.0%
AAATGTTCCATAGAGTAAAG+TGG - chr8.2:30635956-30635975 MS.gene037817:CDS 30.0%
AAATTAACCTCTCTCCAATA+GGG + chr8.2:30635878-30635897 None:intergenic 30.0%
AACAGTTCTACTCTTTCAAA+TGG - chr8.2:30636670-30636689 MS.gene037817:intron 30.0%
AAGAAATTGATAGGTGACAA+AGG + chr8.2:30635031-30635050 None:intergenic 30.0%
AATTAACCTTTGATCCAAAC+AGG - chr8.2:30635501-30635520 MS.gene037817:CDS 30.0%
ACATCTTTCCTGTTTATCTT+TGG - chr8.2:30636693-30636712 MS.gene037817:intron 30.0%
ATGAGAAGCTAATAGAAGTT+GGG - chr8.2:30636516-30636535 MS.gene037817:intron 30.0%
ATGTTGTCAAATATGTTCTG+TGG + chr8.2:30636809-30636828 None:intergenic 30.0%
CAACTACTTGAAATTGTTCA+AGG - chr8.2:30636386-30636405 MS.gene037817:intron 30.0%
GTAGTACATGTGCTATAATT+AGG - chr8.2:30635814-30635833 MS.gene037817:CDS 30.0%
TATGAGAAGCTAATAGAAGT+TGG - chr8.2:30636515-30636534 MS.gene037817:intron 30.0%
TGAAGTTAAGGATAGATTGA+AGG - chr8.2:30637327-30637346 MS.gene037817:intron 30.0%
TGACAACATAATTCAGCATA+AGG - chr8.2:30636820-30636839 MS.gene037817:intron 30.0%
TGATTGCTCAAGTAAGTTTA+GGG - chr8.2:30637699-30637718 MS.gene037817:CDS 30.0%
TGTTAAAGATTCTGCTACTA+TGG - chr8.2:30637144-30637163 MS.gene037817:intron 30.0%
TTGATTGCTCAAGTAAGTTT+AGG - chr8.2:30637698-30637717 MS.gene037817:CDS 30.0%
TTTGTCACCTATCAATTTCT+TGG - chr8.2:30635030-30635049 MS.gene037817:CDS 30.0%
! AACTGTTTTGTATAGTCATC+CGG - chr8.2:30637396-30637415 MS.gene037817:intron 30.0%
! AAGAAATAATCGCCTTTTGT+AGG - chr8.2:30637518-30637537 MS.gene037817:intron 30.0%
! AGAAATAATCGCCTTTTGTA+GGG - chr8.2:30637519-30637538 MS.gene037817:intron 30.0%
! ATTTTCCGATCTCTAATCAA+CGG + chr8.2:30635684-30635703 None:intergenic 30.0%
! CAGATTTTTCACAATTCAAG+GGG + chr8.2:30637675-30637694 None:intergenic 30.0%
! TGAATTAAGGGTACAAAGAA+TGG + chr8.2:30636297-30636316 None:intergenic 30.0%
!! GGTTCTTTGAAGTATAATTG+GGG - chr8.2:30635097-30635116 MS.gene037817:CDS 30.0%
AACTGTGTGAACCTAATCAA+CGG + chr8.2:30635640-30635659 None:intergenic 35.0%
ACAGAAGAAGCTTTCAAAGA+CGG - chr8.2:30637256-30637275 MS.gene037817:intron 35.0%
ACATCTTCAAGATCATGCTT+TGG - chr8.2:30634873-30634892 MS.gene037817:CDS 35.0%
ACTAAAACCTTGTGATTGAG+TGG + chr8.2:30636914-30636933 None:intergenic 35.0%
AGTTTAGATAAGCACCTCTA+TGG + chr8.2:30636643-30636662 None:intergenic 35.0%
ATAGATCGAAGATGAAAGCT+AGG - chr8.2:30637086-30637105 MS.gene037817:intron 35.0%
ATAGCACATGTACTACGATT+TGG + chr8.2:30635810-30635829 None:intergenic 35.0%
ATCTTACCTGTTGAAGTCTT+TGG + chr8.2:30637595-30637614 None:intergenic 35.0%
CAAATTAACCTCTCTCCAAT+AGG + chr8.2:30635879-30635898 None:intergenic 35.0%
CACACAGTTTGATGCAATAA+GGG - chr8.2:30635651-30635670 MS.gene037817:CDS 35.0%
CTAATAGAAGTTGGGCATAA+CGG - chr8.2:30636524-30636543 MS.gene037817:intron 35.0%
CTTTCCAAGATGGAAGAAAT+TGG - chr8.2:30636968-30636987 MS.gene037817:intron 35.0%
GACAGAACATCACTTGTTTA+TGG - chr8.2:30635076-30635095 MS.gene037817:CDS 35.0%
GCTTATGAACTTTAGGTGAA+GGG - chr8.2:30636065-30636084 MS.gene037817:CDS 35.0%
GGAACATTCCAAAGATAAAC+AGG + chr8.2:30636704-30636723 None:intergenic 35.0%
GTTTGAGAATTTACGTGAGA+AGG + chr8.2:30634936-30634955 None:intergenic 35.0%
TAATAGAAGTTGGGCATAAC+GGG - chr8.2:30636525-30636544 MS.gene037817:intron 35.0%
TCACACAGTTTGATGCAATA+AGG - chr8.2:30635650-30635669 MS.gene037817:CDS 35.0%
TGATGGCTACATTGAAGTTA+AGG - chr8.2:30637315-30637334 MS.gene037817:intron 35.0%
TGCGTCTAAACGTGAATTAA+GGG + chr8.2:30636309-30636328 None:intergenic 35.0%
TGCTTATGAACTTTAGGTGA+AGG - chr8.2:30636064-30636083 MS.gene037817:CDS 35.0%
TTCATCTTCGATCTATCTTC+AGG + chr8.2:30637082-30637101 None:intergenic 35.0%
TTCGTAACTCGTTGATGTAA+TGG + chr8.2:30636495-30636514 None:intergenic 35.0%
TTCTTTCTTCTCTGCACAAT+TGG + chr8.2:30635938-30635957 None:intergenic 35.0%
TTGACAATGTTTCGGATTTG+TGG - chr8.2:30635238-30635257 MS.gene037817:CDS 35.0%
TTGGCGAGATAATGTTTAGA+GGG - chr8.2:30637194-30637213 MS.gene037817:intron 35.0%
TTTAGTGTTTCACACCTCTA+CGG - chr8.2:30636992-30637011 MS.gene037817:intron 35.0%
TTTGATGCAATAAGGGATCT+TGG - chr8.2:30635658-30635677 MS.gene037817:CDS 35.0%
! AGAATCATGTTAAGCACTGT+AGG + chr8.2:30636866-30636885 None:intergenic 35.0%
! TGAAATTGTTCAAGGAGCAT+TGG - chr8.2:30636394-30636413 MS.gene037817:intron 35.0%
! TTCAGCTTCAAAAAAGCACA+AGG + chr8.2:30637475-30637494 None:intergenic 35.0%
!! GTAGTTGATAGTCTGCAAAA+AGG + chr8.2:30636373-30636392 None:intergenic 35.0%
!!! CTTTTTTGAAGCTGAAAGAG+GGG - chr8.2:30637479-30637498 MS.gene037817:intron 35.0%
!!! GCTTTTTTGAAGCTGAAAGA+GGG - chr8.2:30637478-30637497 MS.gene037817:intron 35.0%
!!! TGCTTTTTTGAAGCTGAAAG+AGG - chr8.2:30637477-30637496 MS.gene037817:intron 35.0%
!!! TGGCGCATGTTTTAAAGTTT+TGG - chr8.2:30635528-30635547 MS.gene037817:CDS 35.0%
AAATGCAGCTCATACATTGC+AGG + chr8.2:30636254-30636273 None:intergenic 40.0%
AACTCCTTTAGGTCTTGATG+TGG + chr8.2:30636612-30636631 None:intergenic 40.0%
AAGAAGCTTTCAAAGACGGT+TGG - chr8.2:30637260-30637279 MS.gene037817:intron 40.0%
AATGCAGCTCATACATTGCA+GGG + chr8.2:30636253-30636272 None:intergenic 40.0%
ACAAAGGAACAGAGTTTGCA+TGG + chr8.2:30635015-30635034 None:intergenic 40.0%
ACTTATTATACGGTCCGTCA+CGG - chr8.2:30635559-30635578 MS.gene037817:CDS 40.0%
AGAATTTACGTGAGAAGGTG+TGG + chr8.2:30634931-30634950 None:intergenic 40.0%
AGATATACTTCCCAAAGCCT+TGG + chr8.2:30637644-30637663 None:intergenic 40.0%
AGGTGAAGGGATAGTTTCTT+GGG - chr8.2:30636078-30636097 MS.gene037817:CDS 40.0%
AGTGAAGCCACAAAGTGAAT+GGG - chr8.2:30636556-30636575 MS.gene037817:intron 40.0%
ATAGGATCCCATTCACTTTG+TGG + chr8.2:30636566-30636585 None:intergenic 40.0%
ATCTTCGATCTATCTTCAGG+AGG + chr8.2:30637079-30637098 None:intergenic 40.0%
CAACCGTTACAATGGAACAA+CGG + chr8.2:30636725-30636744 None:intergenic 40.0%
CAATGTCCTGTTTGGATCAA+AGG + chr8.2:30635510-30635529 None:intergenic 40.0%
CATCAGTGAAACATCTATGC+TGG + chr8.2:30636183-30636202 None:intergenic 40.0%
CCATAGAGTAAAGTGGATGT+GGG - chr8.2:30635963-30635982 MS.gene037817:CDS 40.0%
CTGCGTCTAAACGTGAATTA+AGG + chr8.2:30636310-30636329 None:intergenic 40.0%
CTTCTTCTCTTACCCAGTTA+GGG - chr8.2:30635149-30635168 MS.gene037817:CDS 40.0%
CTTGCTTCGTGAAAAACGAA+AGG - chr8.2:30636418-30636437 MS.gene037817:intron 40.0%
CTTTGATCCAAACAGGACAT+TGG - chr8.2:30635508-30635527 MS.gene037817:CDS 40.0%
GATATGCCAAAGACTTCAAC+AGG - chr8.2:30637586-30637605 MS.gene037817:CDS 40.0%
GATCATGGGAATCAATGGAA+GGG - chr8.2:30634978-30634997 MS.gene037817:CDS 40.0%
GCTCTCTCCAAGAAATTGAT+AGG + chr8.2:30635040-30635059 None:intergenic 40.0%
GTTCCGTTGTTCCATTGTAA+CGG - chr8.2:30636719-30636738 MS.gene037817:intron 40.0%
GTTGGCGAGATAATGTTTAG+AGG - chr8.2:30637193-30637212 MS.gene037817:intron 40.0%
TAGAAAGCCACTCAATCACA+AGG - chr8.2:30636904-30636923 MS.gene037817:intron 40.0%
TAGGTGAAGGGATAGTTTCT+TGG - chr8.2:30636077-30636096 MS.gene037817:CDS 40.0%
TAGTGAAGCCACAAAGTGAA+TGG - chr8.2:30636555-30636574 MS.gene037817:intron 40.0%
TCATACATTGCAGGGACATT+AGG + chr8.2:30636245-30636264 None:intergenic 40.0%
TCCATAGAGTAAAGTGGATG+TGG - chr8.2:30635962-30635981 MS.gene037817:CDS 40.0%
TCCATCTTGGAAAGAATCTG+CGG + chr8.2:30636962-30636981 None:intergenic 40.0%
! ATTCCATGTCGTTTGCAAAC+AGG - chr8.2:30636205-30636224 MS.gene037817:CDS 40.0%
! CTTTTAACCCTATTGGAGAG+AGG - chr8.2:30635868-30635887 MS.gene037817:CDS 40.0%
! TATTCTAAGGGAGAAAGCCA+AGG - chr8.2:30637624-30637643 MS.gene037817:CDS 40.0%
! TGAGACAACGTTGATGAGTT+TGG + chr8.2:30635123-30635142 None:intergenic 40.0%
! TGCTGCACTTTTAACCCTAT+TGG - chr8.2:30635861-30635880 MS.gene037817:CDS 40.0%
! TTTTTCACAATTCAAGGGGC+TGG + chr8.2:30637671-30637690 None:intergenic 40.0%
!! AAAGACGGTTGGTTTCATAG+TGG - chr8.2:30637271-30637290 MS.gene037817:intron 40.0%
!! AAGACGGTTGGTTTCATAGT+GGG - chr8.2:30637272-30637291 MS.gene037817:intron 40.0%
!! AAGGTTTTAGTGATGACAGG+TGG - chr8.2:30636923-30636942 MS.gene037817:intron 40.0%
!! CACAAGGTTTTAGTGATGAC+AGG - chr8.2:30636920-30636939 MS.gene037817:intron 40.0%
AAACATCTATGCTGGAGTGC+AGG + chr8.2:30636175-30636194 None:intergenic 45.0%
ACCTAATACCGCAAGCAATC+CGG + chr8.2:30635588-30635607 None:intergenic 45.0%
ACTGTCCGATCTCAAATCGA+TGG + chr8.2:30635748-30635767 None:intergenic 45.0%
AGAAAACATTAGCTCGGTCG+AGG - chr8.2:30637369-30637388 MS.gene037817:intron 45.0%
AGAGGGAATACAGTGATGAG+TGG - chr8.2:30637211-30637230 MS.gene037817:intron 45.0%
AGGCAAACGTTCCCTACAAA+AGG + chr8.2:30637533-30637552 None:intergenic 45.0%
AGGGACATTAGGTGCTAATG+TGG + chr8.2:30636234-30636253 None:intergenic 45.0%
AGTGACGCAATAGAGGATCT+TGG - chr8.2:30635614-30635633 MS.gene037817:CDS 45.0%
ATCTTGGAAAGAATCTGCGG+CGG + chr8.2:30636959-30636978 None:intergenic 45.0%
ATTCCCATGATCCTCGATCA+GGG + chr8.2:30634970-30634989 None:intergenic 45.0%
ATTTCCTCCAATGCCACATG+TGG + chr8.2:30637121-30637140 None:intergenic 45.0%
CAACATCCTGCTATAACAGC+AGG - chr8.2:30635780-30635799 MS.gene037817:CDS 45.0%
CAACCTGTTTGCAAACGACA+TGG + chr8.2:30636211-30636230 None:intergenic 45.0%
CAGCATAAGGTGACACACAT+GGG - chr8.2:30636833-30636852 MS.gene037817:intron 45.0%
CCCACATCCACTTTACTCTA+TGG + chr8.2:30635966-30635985 None:intergenic 45.0%
CGTTGTTCCATTGTAACGGT+TGG - chr8.2:30636723-30636742 MS.gene037817:intron 45.0%
CTTATTATACGGTCCGTCAC+GGG - chr8.2:30635560-30635579 MS.gene037817:CDS 45.0%
GCTATTATGGCGAGAGCTTA+TGG + chr8.2:30635372-30635391 None:intergenic 45.0%
GCTTCTTCTCTTACCCAGTT+AGG - chr8.2:30635148-30635167 MS.gene037817:CDS 45.0%
GGAACCACATCAAGACCTAA+AGG - chr8.2:30636605-30636624 MS.gene037817:intron 45.0%
GGATCATGGGAATCAATGGA+AGG - chr8.2:30634977-30634996 MS.gene037817:CDS 45.0%
GGATTTCCTGCTGTTATAGC+AGG + chr8.2:30635789-30635808 None:intergenic 45.0%
GTTTGACCCCAATGATCATC+CGG + chr8.2:30637451-30637470 None:intergenic 45.0%
TACGGCTTGACAGAAACGTA+CGG - chr8.2:30637010-30637029 MS.gene037817:intron 45.0%
TCAGCATAAGGTGACACACA+TGG - chr8.2:30636832-30636851 MS.gene037817:intron 45.0%
TCGAAGATGAAAGCTAGGCA+AGG - chr8.2:30637091-30637110 MS.gene037817:intron 45.0%
TCGAGGATCATGGGAATCAA+TGG - chr8.2:30634973-30634992 MS.gene037817:CDS 45.0%
TGGCTGTAGACAACTCCTTT+AGG + chr8.2:30636623-30636642 None:intergenic 45.0%
TGGGGGAGAAAACATTAGCT+CGG - chr8.2:30637363-30637382 MS.gene037817:intron 45.0%
TTATTATACGGTCCGTCACG+GGG - chr8.2:30635561-30635580 MS.gene037817:CDS 45.0%
TTCACACAGTGACGCAATAG+AGG - chr8.2:30635607-30635626 MS.gene037817:CDS 45.0%
TTCACGTTTAGACGCAGCTA+TGG - chr8.2:30636313-30636332 MS.gene037817:CDS 45.0%
TTTCTTGGAGAGAGCAGCAA+AGG - chr8.2:30635045-30635064 MS.gene037817:CDS 45.0%
! ATTTACGTGAGAAGGTGTGG+TGG + chr8.2:30634928-30634947 None:intergenic 45.0%
! CTTGGCCGTTGATTAGAGAT+CGG - chr8.2:30635676-30635695 MS.gene037817:CDS 45.0%
! TTTACGTGAGAAGGTGTGGT+GGG + chr8.2:30634927-30634946 None:intergenic 45.0%
! TTTTCTATGGACCCTGATCG+AGG - chr8.2:30634956-30634975 MS.gene037817:CDS 45.0%
!! AGACGGTTGGTTTCATAGTG+GGG - chr8.2:30637273-30637292 MS.gene037817:intron 45.0%
!! ATGGAAAGTGTTCCAGCTGA+CGG - chr8.2:30637163-30637182 MS.gene037817:intron 45.0%
!! GTCAGCCATCGATTTGAGAT+CGG - chr8.2:30635740-30635759 MS.gene037817:CDS 45.0%
!! TTGCTTTTGAATGCTCGAGC+AGG + chr8.2:30636346-30636365 None:intergenic 45.0%
!!! GTTTTAGGAGCCATGTAGTG+AGG + chr8.2:30637553-30637572 None:intergenic 45.0%
AAGGGAGAAAGCCAAGGCTT+TGG - chr8.2:30637630-30637649 MS.gene037817:CDS 50.0%
ACATGCGCCAATGTCCTGTT+TGG + chr8.2:30635518-30635537 None:intergenic 50.0%
ACGTTTCTGTCAAGCCGTAG+AGG + chr8.2:30637009-30637028 None:intergenic 50.0%
AGGGAGAAAGCCAAGGCTTT+GGG - chr8.2:30637631-30637650 MS.gene037817:CDS 50.0%
AGGTCTTGATGTGGTTCCTG+AGG + chr8.2:30636603-30636622 None:intergenic 50.0%
AGGTGTTCCACATGTGGCAT+TGG - chr8.2:30637111-30637130 MS.gene037817:intron 50.0%
CAAAGAATGGCTCCAGCCAT+TGG + chr8.2:30636284-30636303 None:intergenic 50.0%
CATAAGGTGACACACATGGG+AGG - chr8.2:30636836-30636855 MS.gene037817:intron 50.0%
CATTTCGCAGTACCAATGGC+TGG - chr8.2:30636269-30636288 MS.gene037817:CDS 50.0%
CCAGCTGACGGAAAAACAGT+TGG - chr8.2:30637175-30637194 MS.gene037817:intron 50.0%
CCTAATACCGCAAGCAATCC+GGG + chr8.2:30635587-30635606 None:intergenic 50.0%
CTAGCTGTGAAACACGCTGA+TGG - chr8.2:30637298-30637317 MS.gene037817:intron 50.0%
CTTGACAGAAACGTACGGTC+CGG - chr8.2:30637015-30637034 MS.gene037817:intron 50.0%
GATTCCCATGATCCTCGATC+AGG + chr8.2:30634971-30634990 None:intergenic 50.0%
GCCGCAGATTCTTTCCAAGA+TGG - chr8.2:30636958-30636977 MS.gene037817:intron 50.0%
GCTGCATTTCGCAGTACCAA+TGG - chr8.2:30636265-30636284 MS.gene037817:CDS 50.0%
GGAACGTTTGCCTCACTACA+TGG - chr8.2:30637540-30637559 MS.gene037817:CDS 50.0%
GGAGACACCAACCGTTACAA+TGG + chr8.2:30636733-30636752 None:intergenic 50.0%
GGAGTTGTCTACAGCCATAG+AGG - chr8.2:30636626-30636645 MS.gene037817:intron 50.0%
TAGTCATCCGGCTGTTCTTG+AGG - chr8.2:30637408-30637427 MS.gene037817:intron 50.0%
TCCACGGGAAATCCCTAACT+GGG + chr8.2:30635164-30635183 None:intergenic 50.0%
TGGGGAGTAGCAGCACAATT+TGG - chr8.2:30636755-30636774 MS.gene037817:intron 50.0%
TTGACAGAAACGTACGGTCC+GGG - chr8.2:30637016-30637035 MS.gene037817:intron 50.0%
TTGTGCGTGGAGACCTGAAT+GGG - chr8.2:30637045-30637064 MS.gene037817:intron 50.0%
TTTGTGCGTGGAGACCTGAA+TGG - chr8.2:30637044-30637063 MS.gene037817:intron 50.0%
! AATTGTGCTGCTACTCCCCA+AGG + chr8.2:30636755-30636774 None:intergenic 50.0%
! ATTGTGCTGCTACTCCCCAA+GGG + chr8.2:30636754-30636773 None:intergenic 50.0%
! GAGGATCTTGGCCGTTGATT+AGG - chr8.2:30635626-30635645 MS.gene037817:CDS 50.0%
! TAACGGTTGGTGTCTCCCTT+GGG - chr8.2:30636736-30636755 MS.gene037817:intron 50.0%
! TAGGCAAGGTGTTCCACATG+TGG - chr8.2:30637105-30637124 MS.gene037817:intron 50.0%
! TGTTCCACATGTGGCATTGG+AGG - chr8.2:30637114-30637133 MS.gene037817:intron 50.0%
!! CCAACTGTTTTTCCGTCAGC+TGG + chr8.2:30637178-30637197 None:intergenic 50.0%
!! GTGGTGGGTTGATCTGAAGT+GGG + chr8.2:30634912-30634931 None:intergenic 50.0%
!! TGTGGTGGGTTGATCTGAAG+TGG + chr8.2:30634913-30634932 None:intergenic 50.0%
ACAGCTCACCACATCTCCAC+GGG + chr8.2:30635179-30635198 None:intergenic 55.0%
ACCCAGTTAGGGATTTCCCG+TGG - chr8.2:30635160-30635179 MS.gene037817:CDS 55.0%
ACTGCAGCCTCAAGAACAGC+CGG + chr8.2:30637418-30637437 None:intergenic 55.0%
AGGGATTTCCCGTGGAGATG+TGG - chr8.2:30635168-30635187 MS.gene037817:CDS 55.0%
CACAGCTCACCACATCTCCA+CGG + chr8.2:30635180-30635199 None:intergenic 55.0%
CCCGGATTGCTTGCGGTATT+AGG - chr8.2:30635584-30635603 MS.gene037817:CDS 55.0%
CTCCACGCACAAAAACTCCC+CGG + chr8.2:30637037-30637056 None:intergenic 55.0%
CTCCACGGGAAATCCCTAAC+TGG + chr8.2:30635165-30635184 None:intergenic 55.0%
GGACCCTGATCGAGGATCAT+GGG - chr8.2:30634964-30634983 MS.gene037817:CDS 55.0%
GGAGGCAATGTGTCCCATTC+AGG + chr8.2:30637061-30637080 None:intergenic 55.0%
TGACAGAAACGTACGGTCCG+GGG - chr8.2:30637017-30637036 MS.gene037817:intron 55.0%
TGGACCCTGATCGAGGATCA+TGG - chr8.2:30634963-30634982 MS.gene037817:CDS 55.0%
TTGAGGCTGCAGTAGTTGCC+CGG - chr8.2:30637425-30637444 MS.gene037817:intron 55.0%
TTGGAAAGAATCTGCGGCGG+TGG + chr8.2:30636956-30636975 None:intergenic 55.0%
! AACGGTTGGTGTCTCCCTTG+GGG - chr8.2:30636737-30636756 MS.gene037817:intron 55.0%
! GTAACGGTTGGTGTCTCCCT+TGG - chr8.2:30636735-30636754 MS.gene037817:intron 55.0%
ACCCCAATGATCATCCGGCC+GGG + chr8.2:30637446-30637465 None:intergenic 60.0%
GAAAGAATCTGCGGCGGTGG+AGG + chr8.2:30636953-30636972 None:intergenic 60.0%
GACCCCAATGATCATCCGGC+CGG + chr8.2:30637447-30637466 None:intergenic 60.0%
TGCCCGGCCGGATGATCATT+GGG - chr8.2:30637441-30637460 MS.gene037817:intron 60.0%
TTGCCCGGCCGGATGATCAT+TGG - chr8.2:30637440-30637459 MS.gene037817:intron 60.0%
! GTCCGGGGAGTTTTTGTGCG+TGG - chr8.2:30637032-30637051 MS.gene037817:intron 60.0%
AAGCAATCCGGGCCCCGTGA+CGG + chr8.2:30635576-30635595 None:intergenic 65.0%
GCCCGGCCGGATGATCATTG+GGG - chr8.2:30637442-30637461 MS.gene037817:intron 65.0%
ATACGGTCCGTCACGGGGCC+CGG - chr8.2:30635566-30635585 MS.gene037817:CDS 70.0%
CACGGGGCCCGGATTGCTTG+CGG - chr8.2:30635577-30635596 MS.gene037817:CDS 70.0%
GGCTGCAGTAGTTGCCCGGC+CGG - chr8.2:30637429-30637448 MS.gene037817:intron 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 30634866 30637726 30634866 ID=MS.gene037817
chr8.2 mRNA 30634866 30637726 30634866 ID=MS.gene037817.t1;Parent=MS.gene037817
chr8.2 exon 30637526 30637726 30637526 ID=MS.gene037817.t1.exon1;Parent=MS.gene037817.t1
chr8.2 CDS 30637526 30637726 30637526 ID=cds.MS.gene037817.t1;Parent=MS.gene037817.t1
chr8.2 exon 30637403 30637426 30637403 ID=MS.gene037817.t1.exon2;Parent=MS.gene037817.t1
chr8.2 CDS 30637403 30637426 30637403 ID=cds.MS.gene037817.t1;Parent=MS.gene037817.t1
chr8.2 exon 30634866 30636365 30634866 ID=MS.gene037817.t1.exon3;Parent=MS.gene037817.t1
chr8.2 CDS 30634866 30636365 30634866 ID=cds.MS.gene037817.t1;Parent=MS.gene037817.t1
Gene Sequence

>MS.gene037817

ATGAACAACATCTTCAAGATCATGCTTTGGACTCGTTCTCTAACCCACTTCAGATCAACCCACCACACCTTCTCACGTAAATTCTCAAACTTTTCTATGGACCCTGATCGAGGATCATGGGAATCAATGGAAGGGCTAGTTCATTGCCATGCAAACTCTGTTCCTTTGTCACCTATCAATTTCTTGGAGAGAGCAGCAAAGGTTTGTAGAGACAGAACATCACTTGTTTATGGTTCTTTGAAGTATAATTGGGGCCAAACTCATCAACGTTGTCTCAAACTTGCTTCTTCTCTTACCCAGTTAGGGATTTCCCGTGGAGATGTGGTGAGCTGTGTTACTTTGCTACATGCATGTCTTTCTTTTAATTTTACTTTGACAATGTTTCGGATTTGTGGCGTTTTTGATTCAACTTCTTTGAGTTTATCTACTATATGAGCACTTGTGAACTGTTTGAGAGCTTATAGAAATAATTTATGATGTGTTTGCATGTTTTCAACTTGTTACCATAAGCTCTCGCCATAATAGCGCTTATTATTAACACCTTATAGCGCTTACATAAATATCGTTTGACTTTATTTTATCTTTTATTATAAAAGTAGATTATACACAAACACTATGATAAACGTTCATCGCATAATTAACCTTTGATCCAAACAGGACATTGGCGCATGTTTTAAAGTTTTGGTAATGTAAACTTATTATACGGTCCGTCACGGGGCCCGGATTGCTTGCGGTATTAGGTTCACACAGTGACGCAATAGAGGATCTTGGCCGTTGATTAGGTTCACACAGTTTGATGCAATAAGGGATCTTGGCCGTTGATTAGAGATCGGAAAATTTAGATTATACATTGGTACAAGTAATTAAAAACAATGTCAGCCATCGATTTGAGATCGGACAGTCAAGATCTGTCACAACATCCTGCTATAACAGCAGGAAATCCAAATCGTAGTACATGTGCTATAATTAGGATTATAGGATGTTTCTATAAAATGTGCTGCACTTTTAACCCTATTGGAGAGAGGTTAATTTGCTGTCGCAACATACAGTTTCTATGTATTGTAATTTACCAATTGTGCAGAGAAGAAAGAAATGTTCCATAGAGTAAAGTGGATGTGGGATTTTAATTTGAGCTACTATTTTGAGTTTAAATTTCAGATTCCAGTAACAGAAAAACAAATGAATGAAACAGAAAAATTGCTTATGAACTTTAGGTGAAGGGATAGTTTCTTGGGTCTGCTACTATTAAATTCTAAGGTTGCAAGAGATTCAATTACTTAGATTACCGAATTTAGTTTAGTTTTTTCCTGCACTCCAGCATAGATGTTTCACTGATGCTATTCCATGTCGTTTGCAAACAGGTTGCCACATTAGCACCTAATGTCCCTGCAATGTATGAGCTGCATTTCGCAGTACCAATGGCTGGAGCCATTCTTTGTACCCTTAATTCACGTTTAGACGCAGCTATGGTTTCAGTCCTGCTCGAGCATTCAAAAGCAAAGATCCTTTTTGCAGACTATCAACTACTTGAAATTGTTCAAGGAGCATTGGACTTGCTTCGTGAAAAACGAAAGGAAATGCCAATTATAGTCTTAGTTACTGATTCTGATTGCTCATCTACGATCGCCATTACATCAACGAGTTACGAATATGAGAAGCTAATAGAAGTTGGGCATAACGGGTTCAATATAGTGAAGCCACAAAGTGAATGGGATCCTATAAGTATAAATTACACCTCAGGAACCACATCAAGACCTAAAGGAGTTGTCTACAGCCATAGAGGTGCTTATCTAAACTCTTTAGCAACAGTTCTACTCTTTCAAATGGACATCTTTCCTGTTTATCTTTGGAATGTTCCGTTGTTCCATTGTAACGGTTGGTGTCTCCCTTGGGGAGTAGCAGCACAATTTGGAACAAATATTTGTCTAAGGAAAGTCTCTCCACAGAACATATTTGACAACATAATTCAGCATAAGGTGACACACATGGGAGGAGCTCCTACAGTGCTTAACATGATTCTGAATTCTGCGTCGACTCATAGAAAGCCACTCAATCACAAGGTTTTAGTGATGACAGGTGGTTCACCTCCACCGCCGCAGATTCTTTCCAAGATGGAAGAAATTGGTTTTAGTGTTTCACACCTCTACGGCTTGACAGAAACGTACGGTCCGGGGAGTTTTTGTGCGTGGAGACCTGAATGGGACACATTGCCTCCTGAAGATAGATCGAAGATGAAAGCTAGGCAAGGTGTTCCACATGTGGCATTGGAGGAAATTGATGTTAAAGATTCTGCTACTATGGAAAGTGTTCCAGCTGACGGAAAAACAGTTGGCGAGATAATGTTTAGAGGGAATACAGTGATGAGTGGATATTTTAGAGATTTGAAAGCAACAGAAGAAGCTTTCAAAGACGGTTGGTTTCATAGTGGGGATCTAGCTGTGAAACACGCTGATGGCTACATTGAAGTTAAGGATAGATTGAAGGATATAATAATATCTGGGGGAGAAAACATTAGCTCGGTCGAGGTAGAAACTGTTTTGTATAGTCATCCGGCTGTTCTTGAGGCTGCAGTAGTTGCCCGGCCGGATGATCATTGGGGTCAAACTCCTTGTGCTTTTTTGAAGCTGAAAGAGGGGTTTGATCAAAATGCTCAAGAAATAATCGCCTTTTGTAGGGAACGTTTGCCTCACTACATGGCTCCTAAAACAGTCATTTTTCTAGATATGCCAAAGACTTCAACAGGTAAGATACAAAAGTATATTCTAAGGGAGAAAGCCAAGGCTTTGGGAAGTATATCTACATCCAGCCCCTTGAATTGTGAAAAATCTGTTGTTGATTGCTCAAGTAAGTTTAGGGAATAG
Protein sequence

>MS.gene037817.t1

MNNIFKIMLWTRSLTHFRSTHHTFSRKFSNFSMDPDRGSWESMEGLVHCHANSVPLSPINFLERAAKLGISRGDVVATLAPNVPAMYELHFAVPMAGAILCTLNSRLDAAMVSVLLEHSKAKILFADYQLLEIVQGALDLLREKRKEMPIIVLVTDSDCSSTIAITSTSYEYEKLIEVGHNGFNIVKPQSEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVLLFQMDIFPVYLWNVPLFHCNGWCLPWGVAAQFGTNICLRKVSPQNIFDNIIQHKVTHMGGAPTVLNMILNSASTHRKPLNHKVLVMTGGSPPPPQILSKMEEIGFSVSHLYGLTETYGPGSFCAWRPEWDTLPPEDRSKMKARQGVPHVALEEIDVKDSATMESVPADGKTVGEIMFRGNTVMSGYFRDLKATEEAFKDGWFHSGDLAVKHADGYIEVKDRLKDIIISGGENISSVEVETVLYSHPAVLEAAVVARPDDHWGQTPCAFLKLKEGFDQNAQEIIAFCRERLPHYMAPKTVIFLDMPKTSTGKIQKYILREKAKALGSISTSSPLNCEKSVVDCSSKFRE