AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038220.t1 MTR_5g090120 98.308 591 9 1 1 591 1 590 0.0 1158
MS.gene038220.t1 MTR_3g449250 77.283 427 94 1 40 463 46 472 0.0 677
MS.gene038220.t1 MTR_3g449250 77.283 427 94 1 40 463 46 472 0.0 677
MS.gene038220.t1 MTR_1g102410 42.640 394 197 6 82 450 45 434 1.40e-94 303
MS.gene038220.t1 MTR_6g056080 43.229 384 203 8 77 450 99 477 4.96e-90 292
MS.gene038220.t1 MTR_2g100230 39.542 349 202 5 91 434 106 450 4.41e-80 261
MS.gene038220.t1 MTR_1g054630 35.477 451 274 8 83 517 156 605 2.58e-76 254
MS.gene038220.t1 MTR_4g105100 38.642 383 215 11 90 463 214 585 1.86e-75 252
MS.gene038220.t1 MTR_3g467550 39.785 372 204 7 69 429 81 443 7.30e-74 245
MS.gene038220.t1 MTR_6g005550 37.322 351 210 5 83 428 167 512 5.38e-73 248
MS.gene038220.t1 MTR_4g114120 35.934 423 245 8 83 483 142 560 6.17e-73 246
MS.gene038220.t1 MTR_3g467550 41.176 340 187 5 101 429 137 474 8.08e-73 243
MS.gene038220.t1 MTR_5g027840 38.810 353 205 8 86 430 109 458 3.19e-72 241
MS.gene038220.t1 MTR_3g083690 36.324 457 261 10 83 520 147 592 4.11e-71 240
MS.gene038220.t1 MTR_2g032630 37.356 348 212 4 86 430 501 845 4.41e-71 248
MS.gene038220.t1 MTR_4g134170 39.452 365 196 7 87 429 293 654 1.58e-69 238
MS.gene038220.t1 MTR_6g005320 39.286 364 196 7 87 429 255 614 1.38e-68 235
MS.gene038220.t1 MTR_7g056830 37.097 372 221 7 85 451 14 377 2.30e-67 226
MS.gene038220.t1 MTR_6g082080 37.097 372 221 7 85 451 14 377 4.31e-67 225
MS.gene038220.t1 MTR_2g438110 32.041 387 230 7 84 456 37 404 1.32e-64 217
MS.gene038220.t1 MTR_1g095810 34.452 447 247 11 91 504 155 588 6.22e-64 220
MS.gene038220.t1 MTR_2g007000 37.326 359 208 7 86 434 509 860 6.35e-64 228
MS.gene038220.t1 MTR_3g467550 40.584 308 170 5 106 402 142 447 2.10e-62 213
MS.gene038220.t1 MTR_7g109720 34.794 388 236 7 51 434 213 587 2.39e-62 220
MS.gene038220.t1 MTR_1g026830 34.783 414 238 9 91 483 157 559 3.07e-62 216
MS.gene038220.t1 MTR_7g076800 32.626 377 241 5 78 451 138 504 6.36e-60 208
MS.gene038220.t1 MTR_2g039960 34.501 371 230 6 85 451 45 406 6.51e-60 205
MS.gene038220.t1 MTR_7g076830 32.626 377 241 5 78 451 140 506 1.27e-59 207
MS.gene038220.t1 MTR_4g105100 38.033 305 175 8 90 388 214 510 5.00e-59 206
MS.gene038220.t1 MTR_7g076820 32.275 378 241 6 78 451 147 513 7.86e-59 205
MS.gene038220.t1 MTR_4g125970 34.409 372 229 8 85 451 45 406 1.32e-58 201
MS.gene038220.t1 MTR_4g125970 34.409 372 229 8 85 451 62 423 1.96e-58 202
MS.gene038220.t1 MTR_8g018400 33.777 376 236 6 85 456 45 411 2.12e-57 198
MS.gene038220.t1 MTR_2g099620 34.043 376 235 6 85 456 29 395 2.22e-57 198
MS.gene038220.t1 MTR_2g099620 34.043 376 235 6 85 456 45 411 2.45e-57 198
MS.gene038220.t1 MTR_2g041140 36.364 374 220 10 84 447 144 509 5.53e-56 202
MS.gene038220.t1 MTR_3g049990 35.190 395 243 8 60 447 131 519 1.40e-55 201
MS.gene038220.t1 MTR_3g071620 31.771 384 231 9 69 426 4 382 1.90e-51 186
MS.gene038220.t1 MTR_4g079320 33.714 350 211 9 85 424 23 361 2.40e-51 189
MS.gene038220.t1 MTR_8g027775 31.635 373 240 9 99 457 120 491 5.71e-50 182
MS.gene038220.t1 MTR_2g066050 35.068 365 219 8 85 440 57 412 1.64e-48 177
MS.gene038220.t1 MTR_8g027780 31.635 373 240 9 99 457 124 495 3.01e-48 177
MS.gene038220.t1 MTR_4g112340 32.410 361 221 12 94 440 110 461 7.07e-47 174
MS.gene038220.t1 MTR_8g027770 31.429 385 244 9 92 457 207 590 6.73e-46 172
MS.gene038220.t1 MTR_3g107420 30.952 378 211 13 106 459 72 423 9.49e-46 167
MS.gene038220.t1 MTR_2g055850 30.978 368 234 9 85 440 95 454 6.86e-45 167
MS.gene038220.t1 MTR_1g012420 30.688 378 212 13 106 459 72 423 1.30e-44 164
MS.gene038220.t1 MTR_6g033070 29.945 364 243 9 80 436 139 497 1.41e-44 166
MS.gene038220.t1 MTR_8g097000 29.140 477 280 17 67 501 270 730 1.80e-44 169
MS.gene038220.t1 MTR_7g057250 32.126 414 206 11 84 425 166 576 4.78e-44 168
MS.gene038220.t1 MTR_4g010565 31.148 366 226 10 106 459 149 500 8.01e-44 164
MS.gene038220.t1 MTR_1g083130 28.706 425 247 10 70 444 15 433 5.55e-42 160
MS.gene038220.t1 MTR_2g063080 27.816 435 237 10 83 449 111 536 7.68e-40 153
MS.gene038220.t1 MTR_0915s0010 32.639 288 181 5 97 381 5 282 3.37e-39 145
MS.gene038220.t1 MTR_6g039840 30.790 367 234 9 85 433 114 478 1.06e-38 151
MS.gene038220.t1 MTR_5g092560 30.952 336 206 9 106 426 101 425 1.70e-38 151
MS.gene038220.t1 MTR_4g059460 27.865 445 246 15 85 455 48 491 1.72e-38 150
MS.gene038220.t1 MTR_4g068990 29.921 381 230 11 84 440 71 438 2.08e-38 151
MS.gene038220.t1 MTR_2g043360 26.754 456 259 14 74 455 34 488 3.49e-38 149
MS.gene038220.t1 MTR_8g027780 31.329 316 203 8 99 400 124 439 1.45e-37 145
MS.gene038220.t1 MTR_7g100820 27.419 372 243 11 91 451 144 499 3.55e-36 143
MS.gene038220.t1 MTR_8g018370 30.899 356 192 10 110 451 2 317 8.55e-36 137
MS.gene038220.t1 MTR_5g069330 29.381 388 247 11 76 451 2 374 2.03e-35 138
MS.gene038220.t1 MTR_5g069330 29.551 379 240 11 85 451 7 370 7.13e-35 137
MS.gene038220.t1 MTR_5g077690 28.235 425 213 14 93 439 41 451 1.12e-34 137
MS.gene038220.t1 MTR_1g046570 29.381 388 220 14 106 451 16 391 9.17e-34 133
MS.gene038220.t1 MTR_1g061970 27.342 395 235 11 110 469 114 491 1.31e-33 134
MS.gene038220.t1 MTR_1g015150 60.345 116 26 3 32 143 4 103 1.28e-32 122
MS.gene038220.t1 MTR_4g112320 31.559 263 167 8 186 440 22 279 3.34e-32 129
MS.gene038220.t1 MTR_6g039840 32.095 296 184 8 153 433 9 302 9.41e-32 129
MS.gene038220.t1 MTR_4g049910 26.196 397 220 12 110 471 89 447 3.39e-29 121
MS.gene038220.t1 MTR_4g077370 36.019 211 118 4 76 278 245 446 4.45e-29 120
MS.gene038220.t1 MTR_4g077370 33.000 200 108 6 80 274 1 179 9.31e-21 95.9
MS.gene038220.t1 MTR_3g118120 26.463 393 248 12 85 442 136 522 3.40e-27 116
MS.gene038220.t1 MTR_2g043360 24.932 365 203 12 161 455 7 370 2.31e-25 110
MS.gene038220.t1 MTR_4g068990 31.050 219 145 4 226 440 11 227 1.89e-23 104
MS.gene038220.t1 MTR_5g092560 31.707 205 135 3 226 426 11 214 3.41e-23 103
MS.gene038220.t1 MTR_1g022305 24.880 418 224 15 85 489 7 347 5.30e-23 102
MS.gene038220.t1 MTR_3g107420 33.871 186 102 5 106 281 72 246 1.40e-22 99.4
MS.gene038220.t1 MTR_4g459350 31.068 206 119 5 85 267 45 250 3.04e-21 94.4
MS.gene038220.t1 MTR_8g042690 24.496 347 230 9 106 434 43 375 2.42e-20 94.7
MS.gene038220.t1 MTR_8g032230 36.000 150 88 4 85 231 14 158 4.25e-19 85.5
MS.gene038220.t1 MTR_4g131750 27.792 385 206 14 81 417 82 442 4.87e-17 84.7
MS.gene038220.t1 MTR_8g079462 28.877 187 119 5 261 439 87 267 5.22e-17 82.8
MS.gene038220.t1 MTR_3g063040 26.857 350 201 16 105 430 19 337 9.50e-14 75.1
MS.gene038220.t1 MTR_1g009617 36.170 94 58 1 358 451 178 269 1.48e-13 73.2
MS.gene038220.t1 MTR_1g102425 32.773 119 70 2 310 428 73 181 3.68e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038220.t1 AT3G22330 66.275 510 148 4 1 486 1 510 0.0 660
MS.gene038220.t1 AT3G22310 60.727 550 137 5 1 511 1 510 0.0 639
MS.gene038220.t1 AT5G26742 65.508 374 125 1 78 447 100 473 1.01e-168 498
MS.gene038220.t1 AT5G26742 65.508 374 125 1 78 447 100 473 1.04e-168 498
MS.gene038220.t1 AT5G26742 66.279 344 112 1 108 447 37 380 7.50e-157 464
MS.gene038220.t1 AT5G62190 45.503 378 193 6 82 450 98 471 5.20e-94 302
MS.gene038220.t1 AT1G55150 39.467 413 220 12 78 467 90 495 1.59e-83 270
MS.gene038220.t1 AT1G55150 39.467 413 220 12 78 467 115 520 1.46e-82 268
MS.gene038220.t1 AT5G63120 38.873 355 208 5 90 439 175 525 1.55e-79 262
MS.gene038220.t1 AT5G14610 37.822 349 204 6 86 429 167 507 7.08e-75 251
MS.gene038220.t1 AT5G14610 37.822 349 204 6 86 429 167 507 8.62e-75 251
MS.gene038220.t1 AT5G14610 35.079 382 238 5 86 462 175 551 1.01e-74 251
MS.gene038220.t1 AT3G01540 37.006 354 213 5 86 434 164 512 1.73e-74 249
MS.gene038220.t1 AT5G14610 39.385 325 187 5 105 424 55 374 3.68e-74 246
MS.gene038220.t1 AT5G14610 39.385 325 187 5 105 424 55 374 3.68e-74 246
MS.gene038220.t1 AT2G42520 36.750 400 236 8 83 466 162 560 3.07e-73 246
MS.gene038220.t1 AT2G42520 36.750 400 236 8 83 466 162 560 3.07e-73 246
MS.gene038220.t1 AT2G42520 36.750 400 236 8 83 466 162 560 3.07e-73 246
MS.gene038220.t1 AT3G58570 36.500 400 237 7 83 466 149 547 3.26e-73 247
MS.gene038220.t1 AT5G14610 36.043 369 226 5 99 462 248 611 3.99e-73 248
MS.gene038220.t1 AT3G01540 36.020 397 242 7 86 475 164 555 1.15e-72 244
MS.gene038220.t1 AT3G01540 36.020 397 242 7 86 475 164 555 1.15e-72 244
MS.gene038220.t1 AT3G01540 36.020 397 242 7 86 475 164 555 1.15e-72 244
MS.gene038220.t1 AT1G20920 36.855 407 237 11 86 480 197 595 1.63e-72 249
MS.gene038220.t1 AT1G20920 37.255 408 234 12 86 480 535 933 5.02e-71 248
MS.gene038220.t1 AT1G20920 37.255 408 234 12 86 480 535 933 5.02e-71 248
MS.gene038220.t1 AT1G20920 37.255 408 234 12 86 480 535 933 5.02e-71 248
MS.gene038220.t1 AT1G20920 37.255 408 234 12 86 480 535 933 5.02e-71 248
MS.gene038220.t1 AT1G20920 37.255 408 234 12 86 480 535 933 5.02e-71 248
MS.gene038220.t1 AT1G20920 37.255 408 234 12 86 480 535 933 5.02e-71 248
MS.gene038220.t1 AT1G31970 41.691 343 186 8 98 429 132 471 1.36e-70 237
MS.gene038220.t1 AT3G58510 35.753 372 226 5 105 463 176 547 4.28e-69 235
MS.gene038220.t1 AT3G58510 35.753 372 226 5 105 463 176 547 4.28e-69 235
MS.gene038220.t1 AT3G58510 35.753 372 226 5 105 463 176 547 4.28e-69 235
MS.gene038220.t1 AT3G06480 36.963 349 212 5 86 430 441 785 4.69e-68 239
MS.gene038220.t1 AT2G33730 38.889 360 195 7 87 424 320 676 4.07e-67 232
MS.gene038220.t1 AT5G60990 34.977 426 255 9 83 490 12 433 1.83e-66 224
MS.gene038220.t1 AT3G19760 32.419 401 231 8 70 456 32 406 4.86e-66 221
MS.gene038220.t1 AT2G47330 36.693 387 220 9 58 434 213 584 4.75e-65 227
MS.gene038220.t1 AT5G14610 35.821 335 200 7 86 415 175 499 9.87e-63 215
MS.gene038220.t1 AT5G63120 38.387 310 182 5 90 394 175 480 1.54e-62 214
MS.gene038220.t1 AT5G63120 38.387 310 182 5 90 394 175 480 1.54e-62 214
MS.gene038220.t1 AT5G63120 38.387 310 182 5 90 394 175 480 1.54e-62 214
MS.gene038220.t1 AT5G63120 38.487 304 178 5 90 388 175 474 1.83e-62 214
MS.gene038220.t1 AT5G51280 33.557 447 259 11 91 513 157 589 3.79e-62 216
MS.gene038220.t1 AT4G00660 32.891 377 240 5 78 451 129 495 4.81e-61 211
MS.gene038220.t1 AT4G00660 32.891 377 240 5 78 451 129 495 4.81e-61 211
MS.gene038220.t1 AT4G33370 33.784 444 259 10 91 513 108 537 1.70e-60 210
MS.gene038220.t1 AT1G51380 31.759 381 227 7 85 451 27 388 2.50e-60 206
MS.gene038220.t1 AT3G61240 32.637 383 233 7 78 451 122 488 2.05e-59 206
MS.gene038220.t1 AT3G61240 32.637 383 233 7 78 451 122 488 2.05e-59 206
MS.gene038220.t1 AT2G45810 33.247 385 241 7 78 458 152 524 2.86e-59 206
MS.gene038220.t1 AT3G09620 33.663 404 225 9 86 480 403 772 4.14e-59 213
MS.gene038220.t1 AT3G09620 33.663 404 225 9 86 480 402 771 4.40e-59 213
MS.gene038220.t1 AT1G72730 33.842 393 246 7 69 456 29 412 4.92e-59 203
MS.gene038220.t1 AT3G13920 34.483 377 232 8 85 456 44 410 9.89e-59 202
MS.gene038220.t1 AT1G28180 36.076 316 191 5 115 424 8 318 1.68e-58 200
MS.gene038220.t1 AT3G13920 34.483 377 232 8 85 456 34 400 2.48e-58 201
MS.gene038220.t1 AT1G16280 33.413 419 255 9 64 470 43 449 8.54e-58 201
MS.gene038220.t1 AT3G13920 34.483 377 227 9 85 456 44 405 8.81e-58 199
MS.gene038220.t1 AT1G71370 33.994 353 222 5 84 426 20 371 1.08e-57 203
MS.gene038220.t1 AT3G06480 35.443 316 196 5 86 397 441 752 4.72e-57 205
MS.gene038220.t1 AT3G13920 34.332 367 226 8 85 446 44 400 5.62e-57 197
MS.gene038220.t1 AT3G13920 34.332 367 226 8 85 446 48 404 8.03e-57 197
MS.gene038220.t1 AT1G54270 34.301 379 230 9 85 456 44 410 3.09e-56 195
MS.gene038220.t1 AT4G16630 36.290 372 222 9 84 447 171 535 7.03e-56 202
MS.gene038220.t1 AT1G54270 34.301 379 225 10 85 456 44 405 2.82e-55 192
MS.gene038220.t1 AT5G05450 32.869 359 221 7 87 426 23 380 5.82e-54 193
MS.gene038220.t1 AT1G77030 33.623 345 218 6 85 424 33 371 1.97e-53 196
MS.gene038220.t1 AT3G18600 32.877 365 229 10 85 440 94 451 6.44e-52 187
MS.gene038220.t1 AT5G08610 32.546 381 232 12 92 453 394 768 8.50e-52 191
MS.gene038220.t1 AT5G65900 33.875 369 221 12 85 440 159 517 2.80e-51 187
MS.gene038220.t1 AT5G63630 31.759 381 245 8 92 458 260 639 5.11e-50 184
MS.gene038220.t1 AT5G63630 31.759 381 245 8 92 458 66 445 1.94e-49 179
MS.gene038220.t1 AT5G08620 32.540 378 230 12 95 453 95 466 2.15e-48 177
MS.gene038220.t1 AT3G02065 30.602 415 253 10 47 431 56 465 3.86e-48 176
MS.gene038220.t1 AT3G02065 30.602 415 253 10 47 431 56 465 3.86e-48 176
MS.gene038220.t1 AT1G63250 32.865 356 224 10 87 427 335 690 2.69e-46 175
MS.gene038220.t1 AT3G02065 32.416 327 207 9 114 431 7 328 1.06e-45 166
MS.gene038220.t1 AT2G07750 33.146 356 223 10 87 427 382 737 2.18e-45 172
MS.gene038220.t1 AT5G11170 31.025 361 233 10 106 459 72 423 5.29e-45 165
MS.gene038220.t1 AT5G11200 31.025 361 233 10 106 459 72 423 5.29e-45 165
MS.gene038220.t1 AT5G11170 31.322 348 223 10 119 459 2 340 6.77e-43 157
MS.gene038220.t1 AT1G12770 27.338 417 250 7 84 447 114 530 2.38e-42 160
MS.gene038220.t1 AT1G12770 27.338 417 250 7 84 447 114 530 2.38e-42 160
MS.gene038220.t1 AT3G16840 31.281 406 203 13 106 439 217 618 3.57e-41 160
MS.gene038220.t1 AT3G16840 31.281 406 203 13 106 439 216 617 3.73e-41 160
MS.gene038220.t1 AT4G09730 31.551 374 222 12 84 432 116 480 2.11e-40 156
MS.gene038220.t1 AT5G11200 28.333 420 246 13 87 459 53 464 1.11e-39 151
MS.gene038220.t1 AT5G54910 29.919 371 237 10 83 440 74 434 3.14e-39 154
MS.gene038220.t1 AT4G15850 27.273 440 234 11 94 457 45 474 8.30e-39 150
MS.gene038220.t1 AT1G71280 32.911 316 179 8 84 392 21 310 4.59e-38 144
MS.gene038220.t1 AT5G11200 27.990 418 230 14 106 459 72 482 6.13e-38 147
MS.gene038220.t1 AT1G71280 32.808 317 180 8 84 393 21 311 1.17e-36 142
MS.gene038220.t1 AT2G40700 27.465 426 231 11 106 455 57 480 3.46e-36 143
MS.gene038220.t1 AT3G09720 27.049 366 252 7 91 451 152 507 6.20e-35 139
MS.gene038220.t1 AT3G09720 27.049 366 252 7 91 451 152 507 6.20e-35 139
MS.gene038220.t1 AT4G34910 28.052 385 223 7 84 418 50 430 2.62e-33 135
MS.gene038220.t1 AT1G51380 31.556 225 144 4 85 307 27 243 7.52e-31 122
MS.gene038220.t1 AT3G53110 27.907 344 219 11 118 441 132 466 3.56e-30 124
MS.gene038220.t1 AT3G06980 27.595 395 246 13 82 442 376 764 4.26e-30 126
MS.gene038220.t1 AT1G51380 32.110 218 133 4 70 285 19 223 7.28e-30 120
MS.gene038220.t1 AT1G51380 32.110 218 133 4 70 285 19 223 8.68e-30 119
MS.gene038220.t1 AT1G28180 35.652 115 70 2 109 219 2 116 3.19e-15 72.8
MS.gene038220.t1 AT1G59990 37.143 105 64 2 327 430 426 529 1.90e-11 67.4
MS.gene038220.t1 AT1G59990 37.143 105 64 2 327 430 426 529 1.95e-11 67.4

Find 173 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGATACTATCTGTGTTTA+TGG 0.088373 5.4:+71236962 MS.gene038220:CDS
AACAAATATCTCTGAATTAT+TGG 0.139299 5.4:-71239200 None:intergenic
CTACGAGTCGGCGCCTAATT+TGG 0.150060 5.4:+71236943 MS.gene038220:CDS
TCCTTTGGTTCCGGTGATTC+AGG 0.244361 5.4:+71240151 MS.gene038220:CDS
GGATCCTCTGGCTTTGGTTT+TGG 0.250641 5.4:+71236880 MS.gene038220:CDS
GGTGGATTCGGTGGTGGTTT+TGG 0.258955 5.4:+71240253 MS.gene038220:CDS
TTCAGCAAACAAGGTGGTTT+TGG 0.273712 5.4:+71240202 MS.gene038220:CDS
GGTGGTGGCGGTGGTGGATT+TGG 0.301297 5.4:+71239962 MS.gene038220:CDS
GGCGGTGGTGGATTTGGTGG+TGG 0.314193 5.4:+71239968 MS.gene038220:CDS
AAGATCAATCCAGGACTCTT+AGG 0.323614 5.4:+71239284 MS.gene038220:CDS
GATGCTTCAAGTTGGGTTCC+AGG 0.324647 5.4:+71237132 MS.gene038220:CDS
TTTAGTGGTGGCGGCAGATT+TGG 0.327034 5.4:+71239941 MS.gene038220:CDS
GAGATATTTGTTCACCGATC+TGG 0.335060 5.4:+71239211 MS.gene038220:CDS
CAGATGAGGCAGCTTGATTA+TGG 0.339395 5.4:+71237004 MS.gene038220:CDS
TGGATACTATCTGTGTTTAT+GGG 0.339756 5.4:+71236963 MS.gene038220:CDS
ACACAGATAGTATCCAAATT+AGG 0.347866 5.4:-71236956 None:intergenic
TCTGGTCGTTTCGGCTCCTT+TGG 0.349279 5.4:+71240136 MS.gene038220:CDS
TTGCCACTAAAACATTAAAA+TGG 0.351701 5.4:-71237988 None:intergenic
CAGAGAGAAAGGACGCTTGC+TGG 0.360452 5.4:+71237953 MS.gene038220:CDS
TCTGGTGGATCAAGCTCATA+TGG 0.363972 5.4:+71240088 MS.gene038220:CDS
ACAAATATCTCTGAATTATT+GGG 0.364531 5.4:-71239199 None:intergenic
AGGAAAGGATCCTCTGGCTT+TGG 0.365920 5.4:+71236874 MS.gene038220:CDS
GCGGTGGTGGATTTGGTGGT+GGG 0.366128 5.4:+71239969 MS.gene038220:CDS
AGAAGGCATACTTTAATTAG+AGG 0.367974 5.4:-71237710 None:intergenic
CGTTTCGGCTCCTTTGGTTC+CGG 0.369745 5.4:+71240142 MS.gene038220:CDS
TCGGGTAAACCTGGCGCATT+TGG 0.373148 5.4:+71240286 MS.gene038220:CDS
TCAGGATATTGTCGCTGCTT+TGG 0.375607 5.4:+71236159 MS.gene038220:CDS
ATATCTTCTCCACATCTTCC+TGG 0.375700 5.4:-71237150 None:intergenic
CGGTGGTGGATTTGGTGGTG+GGG 0.391305 5.4:+71239970 MS.gene038220:CDS
TCTGGAGGCTACAGTAATTC+AGG 0.391318 5.4:+71240028 MS.gene038220:CDS
GACCTCAGTGGCGGCGGTGG+TGG 0.391926 5.4:-71235975 None:intergenic
AATCTCGGCGGCGGCGGGGA+TGG 0.397597 5.4:-71235945 None:intergenic
GGTGGCGGTGGTGGATTTGG+TGG 0.399718 5.4:+71239965 MS.gene038220:CDS
GGAAGATGTGGAGAAGATAT+TGG 0.401318 5.4:+71237153 MS.gene038220:CDS
AAGAGAATCTCGGCGGCGGC+GGG 0.401354 5.4:-71235950 None:intergenic
GCCTCATCTGTTGAGAGATC+GGG 0.401835 5.4:-71236991 None:intergenic
TGGTGGATTCGGTGGTGGTT+CGG 0.403624 5.4:+71240222 MS.gene038220:CDS
ATTATTGATCTTCTTAATAG+AGG 0.404477 5.4:+71237058 MS.gene038220:CDS
AGATTTGGTGGTGGCGGTGG+TGG 0.413951 5.4:+71239956 MS.gene038220:CDS
GTCTTGAGATCGCGAAGCTT+GGG 0.415828 5.4:+71236131 MS.gene038220:CDS
CGCTCTGGTGGATTCGGTGG+TGG 0.416984 5.4:+71240247 MS.gene038220:CDS
TCGGATCGCTCTGGTGGATT+CGG 0.418018 5.4:+71240241 MS.gene038220:CDS
GCTTCTTCTGCTTCTCGCGC+TGG 0.418631 5.4:+71236052 MS.gene038220:CDS
AGAAGAAGCGCGGAATAGTA+AGG 0.421344 5.4:-71236038 None:intergenic
TGCCGTTGATACTGCATCAC+TGG 0.421898 5.4:+71239913 MS.gene038220:CDS
CTTACAAGATCAATGGTTAG+AGG 0.422373 5.4:-71237265 None:intergenic
AGTAGATCTGGTGGATCCTC+TGG 0.426899 5.4:+71240175 MS.gene038220:CDS
GGTGGTGGATTTGGTGGTGG+GGG 0.429754 5.4:+71239971 MS.gene038220:CDS
CATTTGGTGATCGTCGTGGC+AGG 0.437006 5.4:+71240302 MS.gene038220:CDS
CTGAATGATCTTATCCATGA+TGG 0.442475 5.4:-71236459 None:intergenic
ACGGACCTCAGTGGCGGCGG+TGG 0.446279 5.4:-71235978 None:intergenic
TTCTTCAAAACGAAAAGCTT+CGG 0.447487 5.4:-71236083 None:intergenic
GACTAGAGAACTTGCGAAGC+AGG 0.450743 5.4:+71236907 MS.gene038220:CDS
GCATCACTGGGCGGATTTAG+TGG 0.451004 5.4:+71239926 MS.gene038220:CDS
TAATTGAACGCAAACCTGAA+TGG 0.452768 5.4:-71236209 None:intergenic
CTTCGTCAAGAATAACAAAC+TGG 0.453802 5.4:-71237102 None:intergenic
GGATCAAGCTCTGGTCGTTT+CGG 0.456113 5.4:+71240127 MS.gene038220:CDS
CGCGAAGCTTGGGATTTCTC+AGG 0.456686 5.4:+71236141 MS.gene038220:CDS
GGCAGATTTGGTGGTGGCGG+TGG 0.457234 5.4:+71239953 MS.gene038220:CDS
GAACTCACAAGATCAACATT+AGG 0.457570 5.4:-71238040 None:intergenic
CGGGGATGGTTCGCCGTGAG+AGG 0.459848 5.4:-71235931 None:intergenic
TGCCTCATCTGTTGAGAGAT+CGG 0.462495 5.4:-71236992 None:intergenic
AATTGAACGCAAACCTGAAT+GGG 0.465119 5.4:-71236208 None:intergenic
CCGATCAGATGCTTCAAGTT+GGG 0.465196 5.4:+71237125 MS.gene038220:CDS
TCATATGGTGAAAATAGATA+TGG 0.472539 5.4:+71240103 MS.gene038220:CDS
GAAGAGAATCTCGGCGGCGG+CGG 0.473316 5.4:-71235951 None:intergenic
GGTGATTCAGGCAGTAGATC+TGG 0.473447 5.4:+71240163 MS.gene038220:CDS
CTCAATAGTCCTAAGAGTCC+TGG 0.473742 5.4:-71239293 None:intergenic
GGTCTTGAGATCGCGAAGCT+TGG 0.475328 5.4:+71236130 MS.gene038220:CDS
GGTCGAGCAAGAACAGGAAC+TGG 0.480998 5.4:+71236413 MS.gene038220:CDS
GTTCACCGATCTGGACGAAC+TGG 0.481054 5.4:+71239220 MS.gene038220:CDS
ATGATTGGTCGAGCAAGAAC+AGG 0.484418 5.4:+71236407 MS.gene038220:CDS
ATATCACGACCTTGCATAGC+AGG 0.484798 5.4:-71236386 None:intergenic
GTTAACTGCTTTATCCAAGT+TGG 0.487113 5.4:-71237223 None:intergenic
CAGCAAGCGTCCTTTCTCTC+TGG 0.489715 5.4:-71237952 None:intergenic
GGCGGCAGATTTGGTGGTGG+CGG 0.491791 5.4:+71239950 MS.gene038220:CDS
CTCAATACTTACAAGATCAA+TGG 0.494638 5.4:-71237272 None:intergenic
GCAACTGATGTTGCTTCACG+TGG 0.496446 5.4:+71238007 MS.gene038220:CDS
GGGGATGGTTCGCCGTGAGA+GGG 0.505588 5.4:-71235930 None:intergenic
GGATACTATCTGTGTTTATG+GGG 0.508750 5.4:+71236964 MS.gene038220:CDS
TCTCTGCAACAATGCCAACT+TGG 0.508889 5.4:+71237209 MS.gene038220:CDS
GTCGCTGCTTTGGAGAAGAA+AGG 0.510304 5.4:+71236169 MS.gene038220:CDS
CAGGCGAGGAAAGGATCCTC+TGG 0.511594 5.4:+71236868 MS.gene038220:intron
AGGACTATTGAGCGCGATGT+AGG 0.511681 5.4:+71239304 MS.gene038220:CDS
AGTGGTGGCGGCAGATTTGG+TGG 0.513908 5.4:+71239944 MS.gene038220:CDS
ACGCTTGCTGGCTTCAGAAA+CGG 0.518321 5.4:+71237965 MS.gene038220:CDS
TATCACAAGTCCAGAGAGAA+AGG 0.521107 5.4:+71237942 MS.gene038220:CDS
GCCGATCAGATGCTTCAAGT+TGG 0.521989 5.4:+71237124 MS.gene038220:CDS
AGATATGGCGGATCAAGCTC+TGG 0.522047 5.4:+71240118 MS.gene038220:CDS
TTTATACACAAGATCAATCC+AGG 0.523638 5.4:+71239275 MS.gene038220:CDS
GGGTTGTGATTTAGAGTGAA+AGG 0.523987 5.4:-71236017 None:intergenic
ACTGGTCGTGCTGGTAAGAA+AGG 0.525068 5.4:+71239238 MS.gene038220:CDS
TCTGGACGAACTGGTCGTGC+TGG 0.526650 5.4:+71239229 MS.gene038220:CDS
ATTCAGTTTAATGCTAAACA+TGG 0.536360 5.4:+71236476 MS.gene038220:CDS
CTCTTGTAGGAACATGCAAA+AGG 0.540991 5.4:+71237821 MS.gene038220:intron
TCTGATGCGTATGTCAAAGC+AGG 0.544061 5.4:+71237677 MS.gene038220:CDS
CTGGGCGGATTTAGTGGTGG+CGG 0.546376 5.4:+71239932 MS.gene038220:CDS
TCTGATCAGAAGCTGGCAGA+TGG 0.549161 5.4:+71237632 MS.gene038220:CDS
GTGACGGACCTCAGTGGCGG+CGG 0.550652 5.4:-71235981 None:intergenic
TTTGTTGGTGGCCGTTCTGG+AGG 0.551399 5.4:+71240013 MS.gene038220:CDS
AGATCTACTGCCTGAATCAC+CGG 0.553069 5.4:-71240161 None:intergenic
GGTGGTGGTTCGGATCGCTC+TGG 0.559716 5.4:+71240232 MS.gene038220:CDS
CTGGTTCAAGACAATCTGGA+GGG 0.560009 5.4:+71240059 MS.gene038220:CDS
CGCGAGAAGCAGAAGAAGCG+CGG 0.560768 5.4:-71236048 None:intergenic
GGTTCAAGACAATCTGGAGG+GGG 0.561002 5.4:+71240061 MS.gene038220:CDS
TGGAGATTCTGATCAGAAGC+TGG 0.561614 5.4:+71237625 MS.gene038220:CDS
GCCTGAATCACCGGAACCAA+AGG 0.562334 5.4:-71240152 None:intergenic
TCTCCATGCAATGCCTCACA+TGG 0.563344 5.4:-71237917 None:intergenic
TCTGAGGATAGTGGTAATCA+TGG 0.564698 5.4:-71235894 None:intergenic
CGACGATCACCAAATGCGCC+AGG 0.570480 5.4:-71240295 None:intergenic
ACTTGCGAAGCAGGTTGAGA+AGG 0.572880 5.4:+71236916 MS.gene038220:CDS
GATATAGCGGTTGGTACACC+TGG 0.573775 5.4:+71237031 MS.gene038220:CDS
TTCAGTTTAATGCTAAACAT+GGG 0.574341 5.4:+71236477 MS.gene038220:CDS
TGAATGATCTTATCCATGAT+GGG 0.576602 5.4:-71236458 None:intergenic
AGAAGCGCGTCTGAGGATAG+TGG 0.577060 5.4:-71235903 None:intergenic
GATACTATCTGTGTTTATGG+GGG 0.577073 5.4:+71236965 MS.gene038220:CDS
CCCAACTTGAAGCATCTGAT+CGG 0.577618 5.4:-71237125 None:intergenic
TTGATATGGCAGGCGAGGAA+AGG 0.578026 5.4:+71236859 MS.gene038220:intron
AGATCTGGTGGATCCTCTGG+TGG 0.579065 5.4:+71240178 MS.gene038220:CDS
TCGAAATCGAATAGCGATGA+GGG 0.579604 5.4:+71236109 MS.gene038220:CDS
AGAAGATCAATAATTCGTCC+AGG 0.580562 5.4:-71237049 None:intergenic
AGAGAATCTCGGCGGCGGCG+GGG 0.583155 5.4:-71235949 None:intergenic
AGTTGGGTTCCAGGAAGATG+TGG 0.583757 5.4:+71237141 MS.gene038220:CDS
GATCGCTCTGGTGGATTCGG+TGG 0.584846 5.4:+71240244 MS.gene038220:CDS
CACGACCAGTTCGTCCAGAT+CGG 0.587763 5.4:-71239225 None:intergenic
GGTGGTTCGGATCGCTCTGG+TGG 0.588004 5.4:+71240235 MS.gene038220:CDS
GGGTTGAAGAAGCGCGTCTG+AGG 0.591518 5.4:-71235910 None:intergenic
ATGAGAGTTTGTCTCTCAGT+GGG 0.594672 5.4:-71237184 None:intergenic
TCATCGCTATTCGATTTCGA+AGG 0.595547 5.4:-71236106 None:intergenic
ATGCAAGGTCGTGATATGAT+TGG 0.596643 5.4:+71236392 MS.gene038220:CDS
ATTTGGTGATCGTCGTGGCA+GGG 0.597318 5.4:+71240303 MS.gene038220:CDS
GAAGAAGCGCGGAATAGTAA+GGG 0.597324 5.4:-71236037 None:intergenic
GTGCTGGAACCTGCTATGCA+AGG 0.597518 5.4:+71236377 MS.gene038220:CDS
TCTGGTGGATTCAGCAAACA+AGG 0.597677 5.4:+71240193 MS.gene038220:CDS
GCCCAGTGATGCAGTATCAA+CGG 0.599175 5.4:-71239915 None:intergenic
CTCCACCACCGCCGCCACTG+AGG 0.601203 5.4:+71235973 MS.gene038220:CDS
CACCAACAAAAGAACCAGAT+CGG 0.603698 5.4:-71240000 None:intergenic
GCCGTTGATACTGCATCACT+GGG 0.604878 5.4:+71239914 MS.gene038220:CDS
GAGGCTACAGTAATTCAGGC+GGG 0.607727 5.4:+71240032 MS.gene038220:CDS
AGGATCTTGCTGTGAGGTGA+CGG 0.611114 5.4:-71235997 None:intergenic
ATTCCATGTGAGGCATTGCA+TGG 0.611273 5.4:+71237914 MS.gene038220:CDS
GGAGAAGAGAATCTCGGCGG+CGG 0.613460 5.4:-71235954 None:intergenic
TATGGTGTTGATATAGCGGT+TGG 0.615411 5.4:+71237022 MS.gene038220:CDS
GGTGGTGGAGAAGAGAATCT+CGG 0.623069 5.4:-71235960 None:intergenic
GGTGGCGGCAGATTTGGTGG+TGG 0.628826 5.4:+71239947 MS.gene038220:CDS
TGATTATGGTGTTGATATAG+CGG 0.635851 5.4:+71237018 MS.gene038220:CDS
GGAGGCTACAGTAATTCAGG+CGG 0.636585 5.4:+71240031 MS.gene038220:CDS
TTGTAGGAACATGCAAAAGG+AGG 0.637081 5.4:+71237824 MS.gene038220:intron
CCCCGATCTCTCAACAGATG+AGG 0.638550 5.4:+71236990 MS.gene038220:CDS
TCTGGTTCAAGACAATCTGG+AGG 0.644868 5.4:+71240058 MS.gene038220:CDS
TCACTGGGCGGATTTAGTGG+TGG 0.646109 5.4:+71239929 MS.gene038220:CDS
CCTCATCTGTTGAGAGATCG+GGG 0.649386 5.4:-71236990 None:intergenic
TGAGAAGGAATTCTACGAGT+CGG 0.649678 5.4:+71236931 MS.gene038220:CDS
TGGTTCAAGACAATCTGGAG+GGG 0.649848 5.4:+71240060 MS.gene038220:CDS
TTCAAAACGAAAAGCTTCGG+CGG 0.649977 5.4:-71236080 None:intergenic
TATGGTGAAAATAGATATGG+CGG 0.650568 5.4:+71240106 MS.gene038220:CDS
CATGAGAGTTTGTCTCTCAG+TGG 0.652328 5.4:-71237185 None:intergenic
TTCGAAATCGAATAGCGATG+AGG 0.652697 5.4:+71236108 MS.gene038220:CDS
GATTCAGGCAGTAGATCTGG+TGG 0.657314 5.4:+71240166 MS.gene038220:CDS
TTGTTTGCTGAATCCACCAG+AGG 0.663460 5.4:-71240191 None:intergenic
TGCTTCGCAAGTTCTCTAGT+CGG 0.663905 5.4:-71236905 None:intergenic
AATTACTGTAGCCTCCAGAA+CGG 0.666725 5.4:-71240024 None:intergenic
CAACTGATGTTGCTTCACGT+GGG 0.668416 5.4:+71238008 MS.gene038220:CDS
GGCGCCAAAACCAAAGCCAG+AGG 0.670484 5.4:-71236884 None:intergenic
GACGCTGATCGAATATCACA+TGG 0.675934 5.4:+71237878 MS.gene038220:CDS
GAGGTGACGGACCTCAGTGG+CGG 0.677602 5.4:-71235984 None:intergenic
GCGCTTCTTCAACCCTCTCA+CGG 0.678157 5.4:+71235918 MS.gene038220:CDS
GGCGCATTTGGTGATCGTCG+TGG 0.680089 5.4:+71240298 MS.gene038220:CDS
GTTGATACTGCATCACTGGG+CGG 0.682139 5.4:+71239917 MS.gene038220:CDS
TGTGAGGTGACGGACCTCAG+TGG 0.713390 5.4:-71235987 None:intergenic
GGTGGATTCAGCAAACAAGG+TGG 0.720028 5.4:+71240196 MS.gene038220:CDS
GGTGGAGAAGAGAATCTCGG+CGG 0.777683 5.4:-71235957 None:intergenic
AGTGAAAGGATCTTGCTGTG+AGG 0.785087 5.4:-71236003 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATGGAATAAAATATAT+TGG - chr5.4:71238104-71238123 None:intergenic 10.0%
!! TAAAAAAATAAATTAACAAC+TGG - chr5.4:71239828-71239847 None:intergenic 10.0%
!! TTTATATCTGTATTAATATA+TGG - chr5.4:71238119-71238138 None:intergenic 10.0%
!!! AAAGTTTACATTTTTTTTTT+TGG + chr5.4:71236836-71236855 MS.gene038220:intron 10.0%
!!! AAATTTTTGTATATGAATTT+AGG + chr5.4:71237486-71237505 MS.gene038220:intron 10.0%
!!! AATAAATGTTTTTTTGTTTT+CGG + chr5.4:71238835-71238854 MS.gene038220:intron 10.0%
!! AAAATTAGATATTAGAATCT+TGG + chr5.4:71238864-71238883 MS.gene038220:intron 15.0%
!! AATATAATATGAAAACAAGT+GGG - chr5.4:71239571-71239590 None:intergenic 15.0%
!! AATGATATAATAATAACTTG+AGG - chr5.4:71239765-71239784 None:intergenic 15.0%
!! TTATTATTTAACTATCTCTA+TGG + chr5.4:71238701-71238720 MS.gene038220:intron 15.0%
!! TTGATTGATAGAAAAAATTT+GGG + chr5.4:71237420-71237439 MS.gene038220:intron 15.0%
!! TTTGATTGATAGAAAAAATT+TGG + chr5.4:71237419-71237438 MS.gene038220:intron 15.0%
!!! AAACATTTTTTTGTTATAAC+AGG - chr5.4:71238152-71238171 None:intergenic 15.0%
!!! AAATGAAGTTAAATTGTTTT+TGG + chr5.4:71236660-71236679 MS.gene038220:intron 15.0%
!!! AACATTTTTTTGTTATAACA+GGG - chr5.4:71238151-71238170 None:intergenic 15.0%
!!! ACATGCATTAATTTTTTATT+TGG + chr5.4:71238520-71238539 MS.gene038220:intron 15.0%
!!! ATTTTTTTTTTTGGTTGATA+TGG + chr5.4:71236845-71236864 MS.gene038220:intron 15.0%
!! AACAAATATCTCTGAATTAT+TGG - chr5.4:71239203-71239222 None:intergenic 20.0%
!! AATGTTATAATATTCCATTG+TGG - chr5.4:71237401-71237420 None:intergenic 20.0%
!! ACAAATATCTCTGAATTATT+GGG - chr5.4:71239202-71239221 None:intergenic 20.0%
!! AGAAATTAGACTACATTTAA+AGG + chr5.4:71239429-71239448 MS.gene038220:intron 20.0%
!! ATTATTGATCTTCTTAATAG+AGG + chr5.4:71237058-71237077 MS.gene038220:CDS 20.0%
!! CAGAAAAATAGTAATAAACA+AGG - chr5.4:71239404-71239423 None:intergenic 20.0%
!! CTAATAATCTAAATTTAGTC+TGG + chr5.4:71239521-71239540 MS.gene038220:intron 20.0%
!! GAAATTAGACTACATTTAAA+GGG + chr5.4:71239430-71239449 MS.gene038220:intron 20.0%
!! GAATATAATATGAAAACAAG+TGG - chr5.4:71239572-71239591 None:intergenic 20.0%
!! GAGAAATATTTGGATTTAAA+TGG + chr5.4:71238343-71238362 MS.gene038220:intron 20.0%
!! GTAACTTATTACACTAATTT+AGG - chr5.4:71239075-71239094 None:intergenic 20.0%
!! GTTTGTTCTTTAGATATTAT+TGG + chr5.4:71236499-71236518 MS.gene038220:intron 20.0%
!!! AATTTGTTGAATTTTGTAGA+GGG + chr5.4:71236352-71236371 MS.gene038220:intron 20.0%
!!! AATTTTTTATTTGGAAGTTC+AGG + chr5.4:71238529-71238548 MS.gene038220:intron 20.0%
!!! ATACATTTTGGAACATTATT+AGG + chr5.4:71238996-71239015 MS.gene038220:intron 20.0%
!!! CTTGTTTATTACTATTTTTC+TGG + chr5.4:71239402-71239421 MS.gene038220:intron 20.0%
!!! GAACATTATTAGGTTTTTTT+TGG + chr5.4:71239006-71239025 MS.gene038220:intron 20.0%
!!! GTATAATCTATAAACTGTTT+TGG + chr5.4:71236682-71236701 MS.gene038220:intron 20.0%
!!! TAATTTGTTGAATTTTGTAG+AGG + chr5.4:71236351-71236370 MS.gene038220:intron 20.0%
!!! TAGTTTCAACATTTTAATCA+TGG - chr5.4:71237346-71237365 None:intergenic 20.0%
! AAAGATACCAATTACACTAT+GGG - chr5.4:71236809-71236828 None:intergenic 25.0%
! AAATTGAGAGGATTATATGA+TGG - chr5.4:71237778-71237797 None:intergenic 25.0%
! AATATTTGGATTTAAATGGC+CGG + chr5.4:71238347-71238366 MS.gene038220:intron 25.0%
! AATGAACACTTCAAAACATT+AGG - chr5.4:71238612-71238631 None:intergenic 25.0%
! ATATTAGAATCTTGGATGTA+AGG + chr5.4:71238872-71238891 MS.gene038220:intron 25.0%
! ATGAAAATGGATAATATGCA+GGG - chr5.4:71239353-71239372 None:intergenic 25.0%
! ATTCAGTTTAATGCTAAACA+TGG + chr5.4:71236476-71236495 MS.gene038220:CDS 25.0%
! CCAAATATTTCTCTTAGATT+TGG - chr5.4:71238336-71238355 None:intergenic 25.0%
! CCAAATCTAAGAGAAATATT+TGG + chr5.4:71238333-71238352 MS.gene038220:intron 25.0%
! CTATTTAACTGTGAACTTAT+TGG + chr5.4:71237593-71237612 MS.gene038220:intron 25.0%
! TAAAGATACCAATTACACTA+TGG - chr5.4:71236810-71236829 None:intergenic 25.0%
! TAAAGATTGACAGATGAAAA+TGG - chr5.4:71239366-71239385 None:intergenic 25.0%
! TACATTGTCTTATCTTATGA+AGG - chr5.4:71237467-71237486 None:intergenic 25.0%
! TATTAGAATCTTGGATGTAA+GGG + chr5.4:71238873-71238892 MS.gene038220:intron 25.0%
! TCATATGGTGAAAATAGATA+TGG + chr5.4:71240103-71240122 MS.gene038220:CDS 25.0%
! TTCAGTTTAATGCTAAACAT+GGG + chr5.4:71236477-71236496 MS.gene038220:CDS 25.0%
! TTGCCACTAAAACATTAAAA+TGG - chr5.4:71237991-71238010 None:intergenic 25.0%
! TTGGTTGAAACTAAATTGAT+GGG - chr5.4:71239639-71239658 None:intergenic 25.0%
! TTTGAATTGAAGCTAGATAT+AGG + chr5.4:71236560-71236579 MS.gene038220:intron 25.0%
!! CATAACATTTTATCATCAAC+CGG - chr5.4:71238369-71238388 None:intergenic 25.0%
!! TATGGTCATTTAGAAGTATA+TGG + chr5.4:71237522-71237541 MS.gene038220:intron 25.0%
!! TTGTTTTCACAATTCTGTAT+AGG - chr5.4:71239727-71239746 None:intergenic 25.0%
!!! AACTTATAAAAGCATTGACA+AGG + chr5.4:71238245-71238264 MS.gene038220:intron 25.0%
!!! ATTAGTAACTTGAGTTTTGT+CGG - chr5.4:71239506-71239525 None:intergenic 25.0%
!!! GTTATTTTTTTGTATGCATC+TGG + chr5.4:71239030-71239049 MS.gene038220:intron 25.0%
!!! TTATATGATGGATCATTAGT+TGG - chr5.4:71237766-71237785 None:intergenic 25.0%
!!! TTCAACATTTTAATCATGGT+AGG - chr5.4:71237342-71237361 None:intergenic 25.0%
AAAATGTTTAGTCCCATCTT+AGG + chr5.4:71238163-71238182 MS.gene038220:intron 30.0%
ACACAGATAGTATCCAAATT+AGG - chr5.4:71236959-71236978 None:intergenic 30.0%
ATAACTTTACGATGTCAATG+GGG - chr5.4:71238081-71238100 None:intergenic 30.0%
ATTAGAATCTTGGATGTAAG+GGG + chr5.4:71238874-71238893 MS.gene038220:intron 30.0%
ATTTAACTATCTCTATGGCA+CGG + chr5.4:71238706-71238725 MS.gene038220:intron 30.0%
CATAATGAATCACCTATATG+AGG - chr5.4:71239174-71239193 None:intergenic 30.0%
CTCAATACTTACAAGATCAA+TGG - chr5.4:71237275-71237294 None:intergenic 30.0%
GAAGAGAAAACAAAATTGAG+AGG - chr5.4:71237790-71237809 None:intergenic 30.0%
GAATGAAAACATTAAGAGCT+AGG - chr5.4:71239701-71239720 None:intergenic 30.0%
GATAACTTTACGATGTCAAT+GGG - chr5.4:71238082-71238101 None:intergenic 30.0%
GATGAAAATGGATAATATGC+AGG - chr5.4:71239354-71239373 None:intergenic 30.0%
GTGTGTTCTTGTATCTTAAT+GGG + chr5.4:71238957-71238976 MS.gene038220:intron 30.0%
GTTGGTTGAAACTAAATTGA+TGG - chr5.4:71239640-71239659 None:intergenic 30.0%
TATGGTGAAAATAGATATGG+CGG + chr5.4:71240106-71240125 MS.gene038220:CDS 30.0%
TCGAAAAATAATCCTCTTGT+AGG + chr5.4:71237808-71237827 MS.gene038220:intron 30.0%
TGAATGATCTTATCCATGAT+GGG - chr5.4:71236461-71236480 None:intergenic 30.0%
TGCTAGAATGAAATTACATG+TGG + chr5.4:71239611-71239630 MS.gene038220:intron 30.0%
TGGATACTATCTGTGTTTAT+GGG + chr5.4:71236963-71236982 MS.gene038220:CDS 30.0%
TTCTTCAAAACGAAAAGCTT+CGG - chr5.4:71236086-71236105 None:intergenic 30.0%
TTGGATACTATCTGTGTTTA+TGG + chr5.4:71236962-71236981 MS.gene038220:CDS 30.0%
TTTATACACAAGATCAATCC+AGG + chr5.4:71239275-71239294 MS.gene038220:CDS 30.0%
! AGAAGGCATACTTTAATTAG+AGG - chr5.4:71237713-71237732 None:intergenic 30.0%
! CATTGATCTTGTAAGTATTG+AGG + chr5.4:71237273-71237292 MS.gene038220:intron 30.0%
!! AACATTTTAATCATGGTAGG+AGG - chr5.4:71237339-71237358 None:intergenic 30.0%
!! GTTCATGGTTCTATACATTT+TGG + chr5.4:71238984-71239003 MS.gene038220:intron 30.0%
!! TATAAAAGCATTGACAAGGA+GGG + chr5.4:71238249-71238268 MS.gene038220:intron 30.0%
!! TGATTATGGTGTTGATATAG+CGG + chr5.4:71237018-71237037 MS.gene038220:CDS 30.0%
!! TTATAAAAGCATTGACAAGG+AGG + chr5.4:71238248-71238267 MS.gene038220:intron 30.0%
!!! CATTTTGTTATTGTGTGAAC+TGG + chr5.4:71238481-71238500 MS.gene038220:intron 30.0%
!!! TTGAGCTTTTTTCCTCATAT+AGG + chr5.4:71239159-71239178 MS.gene038220:intron 30.0%
!!! TTTTTTTTGGTTGATATGGC+AGG + chr5.4:71236849-71236868 MS.gene038220:intron 30.0%
AATTGAACGCAAACCTGAAT+GGG - chr5.4:71236211-71236230 None:intergenic 35.0%
ACCTATTAACTGTCGTAGTA+AGG + chr5.4:71237367-71237386 MS.gene038220:intron 35.0%
AGAAGATCAATAATTCGTCC+AGG - chr5.4:71237052-71237071 None:intergenic 35.0%
ATGAATTTAGGAAGCCGTTA+TGG + chr5.4:71237498-71237517 MS.gene038220:intron 35.0%
CTAAATGACCATAGCCATAA+CGG - chr5.4:71237515-71237534 None:intergenic 35.0%
CTGAATGATCTTATCCATGA+TGG - chr5.4:71236462-71236481 None:intergenic 35.0%
CTTACAAGATCAATGGTTAG+AGG - chr5.4:71237268-71237287 None:intergenic 35.0%
CTTCGTCAAGAATAACAAAC+TGG - chr5.4:71237105-71237124 None:intergenic 35.0%
GAACACTTCAAAACATTAGG+AGG - chr5.4:71238609-71238628 None:intergenic 35.0%
GAACTCACAAGATCAACATT+AGG - chr5.4:71238043-71238062 None:intergenic 35.0%
GATACTATCTGTGTTTATGG+GGG + chr5.4:71236965-71236984 MS.gene038220:CDS 35.0%
GGATAACTTTACGATGTCAA+TGG - chr5.4:71238083-71238102 None:intergenic 35.0%
GGATACTATCTGTGTTTATG+GGG + chr5.4:71236964-71236983 MS.gene038220:CDS 35.0%
GGTGTGTTCTTGTATCTTAA+TGG + chr5.4:71238956-71238975 MS.gene038220:intron 35.0%
GTGAAAAACACAACTCTTGT+TGG - chr5.4:71239658-71239677 None:intergenic 35.0%
GTTAACTGCTTTATCCAAGT+TGG - chr5.4:71237226-71237245 None:intergenic 35.0%
TAACTTTACGATGTCAATGG+GGG - chr5.4:71238080-71238099 None:intergenic 35.0%
TAATTGAACGCAAACCTGAA+TGG - chr5.4:71236212-71236231 None:intergenic 35.0%
TACATCTGCAAGGGAAATAT+TGG + chr5.4:71238812-71238831 MS.gene038220:intron 35.0%
TTATGTTCTCTCCTACTTTC+TGG + chr5.4:71238437-71238456 MS.gene038220:intron 35.0%
! ACTGGAAAAACTCTTGCTTT+TGG + chr5.4:71236431-71236450 MS.gene038220:CDS 35.0%
! AGATCAACAGTCAGTCATTT+TGG + chr5.4:71237559-71237578 MS.gene038220:intron 35.0%
! ATTCAGGTTTGCGTTCAATT+AGG + chr5.4:71236211-71236230 MS.gene038220:intron 35.0%
! ATTTGGACTGAGATTTTCCT+TGG - chr5.4:71238319-71238338 None:intergenic 35.0%
! CAATGGTTAGAGGATTTTTC+AGG - chr5.4:71237258-71237277 None:intergenic 35.0%
! TCTGGAAGTCTTTTGTGTTT+AGG + chr5.4:71238935-71238954 MS.gene038220:intron 35.0%
! TGTAGGCTGTAAATTTTCAG+AGG + chr5.4:71239321-71239340 MS.gene038220:CDS 35.0%
! TTCAGGTTTGCGTTCAATTA+GGG + chr5.4:71236212-71236231 MS.gene038220:intron 35.0%
!! ATCTTAATGGGTTCTGTTCA+TGG + chr5.4:71238969-71238988 MS.gene038220:intron 35.0%
!! CGGCCATTTTAATGTTTTAG+TGG + chr5.4:71237985-71238004 MS.gene038220:CDS 35.0%
!! CTGGAAAAACTCTTGCTTTT+GGG + chr5.4:71236432-71236451 MS.gene038220:CDS 35.0%
!!! TTTTCTGGTTCAAGACAATC+TGG + chr5.4:71240055-71240074 MS.gene038220:CDS 35.0%
AAACAGGCCCATAGTGTAAT+TGG + chr5.4:71236799-71236818 MS.gene038220:intron 40.0%
AAAGACTTCCAGATCATTCG+TGG - chr5.4:71238928-71238947 None:intergenic 40.0%
AACCTGAATGGGAAAAAGCT+TGG - chr5.4:71236200-71236219 None:intergenic 40.0%
AACTTTACGATGTCAATGGG+GGG - chr5.4:71238079-71238098 None:intergenic 40.0%
AAGATCAATCCAGGACTCTT+AGG + chr5.4:71239284-71239303 MS.gene038220:CDS 40.0%
AATGGGGGGAAAAAGGTAAA+AGG - chr5.4:71238065-71238084 None:intergenic 40.0%
AATTACTGTAGCCTCCAGAA+CGG - chr5.4:71240027-71240046 None:intergenic 40.0%
AGCTAGATATAGGCTCTGTT+TGG + chr5.4:71236570-71236589 MS.gene038220:intron 40.0%
ATATCTTCTCCACATCTTCC+TGG - chr5.4:71237153-71237172 None:intergenic 40.0%
ATGAGAGTTTGTCTCTCAGT+GGG - chr5.4:71237187-71237206 None:intergenic 40.0%
ATGCAAGGTCGTGATATGAT+TGG + chr5.4:71236392-71236411 MS.gene038220:CDS 40.0%
ATGCTGTCTGAGCTTCAAAT+GGG + chr5.4:71238762-71238781 MS.gene038220:intron 40.0%
ATGTATCACCCACCTAAGAT+GGG - chr5.4:71238178-71238197 None:intergenic 40.0%
ATGTTTAGTCCCATCTTAGG+TGG + chr5.4:71238166-71238185 MS.gene038220:intron 40.0%
CAACAGACTATCCAGAAAGT+AGG - chr5.4:71238451-71238470 None:intergenic 40.0%
CACCAACAAAAGAACCAGAT+CGG - chr5.4:71240003-71240022 None:intergenic 40.0%
CTCAACTCTTACATCTGCAA+GGG + chr5.4:71238803-71238822 MS.gene038220:intron 40.0%
CTCTTGTAGGAACATGCAAA+AGG + chr5.4:71237821-71237840 MS.gene038220:intron 40.0%
CTGTGAACTTATTGGTACCT+AGG + chr5.4:71237601-71237620 MS.gene038220:intron 40.0%
GAACTTATTGGTACCTAGGT+TGG + chr5.4:71237605-71237624 MS.gene038220:intron 40.0%
GAGATATTTGTTCACCGATC+TGG + chr5.4:71239211-71239230 MS.gene038220:CDS 40.0%
GCCTTACTACGACAGTTAAT+AGG - chr5.4:71237371-71237390 None:intergenic 40.0%
GGAAGATGTGGAGAAGATAT+TGG + chr5.4:71237153-71237172 MS.gene038220:CDS 40.0%
TATCACAAGTCCAGAGAGAA+AGG + chr5.4:71237942-71237961 MS.gene038220:CDS 40.0%
TATGCTGTCTGAGCTTCAAA+TGG + chr5.4:71238761-71238780 MS.gene038220:intron 40.0%
TATGTATCACCCACCTAAGA+TGG - chr5.4:71238179-71238198 None:intergenic 40.0%
TCATCGCTATTCGATTTCGA+AGG - chr5.4:71236109-71236128 None:intergenic 40.0%
TCGAAATCGAATAGCGATGA+GGG + chr5.4:71236109-71236128 MS.gene038220:CDS 40.0%
TGAGAAGGAATTCTACGAGT+CGG + chr5.4:71236931-71236950 MS.gene038220:CDS 40.0%
TGGATGTAAGGGGTAATGAT+AGG + chr5.4:71238884-71238903 MS.gene038220:intron 40.0%
TGTTTAGTCCCATCTTAGGT+GGG + chr5.4:71238167-71238186 MS.gene038220:intron 40.0%
TTCAAAACGAAAAGCTTCGG+CGG - chr5.4:71236083-71236102 None:intergenic 40.0%
TTCGAAATCGAATAGCGATG+AGG + chr5.4:71236108-71236127 MS.gene038220:CDS 40.0%
TTGTAGGAACATGCAAAAGG+AGG + chr5.4:71237824-71237843 MS.gene038220:intron 40.0%
! AATAGTCTTGCCGTTATAGG+TGG + chr5.4:71238286-71238305 MS.gene038220:intron 40.0%
! AATGTTATGCGAAAGCGCAT+TGG + chr5.4:71238380-71238399 MS.gene038220:intron 40.0%
! CCTGTTTTGTGAGACTGTTT+GGG - chr5.4:71236786-71236805 None:intergenic 40.0%
! CTTTTGCATGTTCCTACAAG+AGG - chr5.4:71237823-71237842 None:intergenic 40.0%
! GAGAATAGTCTTGCCGTTAT+AGG + chr5.4:71238283-71238302 MS.gene038220:intron 40.0%
! GCAGTATCAACGGCAATTTT+TGG - chr5.4:71239908-71239927 None:intergenic 40.0%
! GGGCACTTTTATAAGACTTG+AGG - chr5.4:71239551-71239570 None:intergenic 40.0%
! GGGTTGTGATTTAGAGTGAA+AGG - chr5.4:71236020-71236039 None:intergenic 40.0%
! TTCAGCAAACAAGGTGGTTT+TGG + chr5.4:71240202-71240221 MS.gene038220:CDS 40.0%
!! ACTTGAGTTTTGTCGGTACT+TGG - chr5.4:71239499-71239518 None:intergenic 40.0%
!! GTCAAAAAGCATTCCATGTG+AGG + chr5.4:71237904-71237923 MS.gene038220:CDS 40.0%
!! TATGGTGTTGATATAGCGGT+TGG + chr5.4:71237022-71237041 MS.gene038220:CDS 40.0%
!!! ATCAGCGTCACGTTTTGTTT+GGG - chr5.4:71237867-71237886 None:intergenic 40.0%
!!! GTGGTGGTTTTGGAGATTTT+CGG + chr5.4:71240263-71240282 MS.gene038220:CDS 40.0%
!!! TGGTTTTGGAGATTTTCGGT+CGG + chr5.4:71240267-71240286 MS.gene038220:CDS 40.0%
AGATCTACTGCCTGAATCAC+CGG - chr5.4:71240164-71240183 None:intergenic 45.0%
ATATCACGACCTTGCATAGC+AGG - chr5.4:71236389-71236408 None:intergenic 45.0%
CAAGGAACGATGGTAACAGA+AGG - chr5.4:71237730-71237749 None:intergenic 45.0%
CAGATGAGGCAGCTTGATTA+TGG + chr5.4:71237004-71237023 MS.gene038220:CDS 45.0%
CATGAGAGTTTGTCTCTCAG+TGG - chr5.4:71237188-71237207 None:intergenic 45.0%
CCCAAACAGTCTCACAAAAC+AGG + chr5.4:71236783-71236802 MS.gene038220:intron 45.0%
CTCAATAGTCCTAAGAGTCC+TGG - chr5.4:71239296-71239315 None:intergenic 45.0%
CTGATCAGAATCTCCAACCT+AGG - chr5.4:71237621-71237640 None:intergenic 45.0%
CTGGTTCAAGACAATCTGGA+GGG + chr5.4:71240059-71240078 MS.gene038220:CDS 45.0%
GACGCTGATCGAATATCACA+TGG + chr5.4:71237878-71237897 MS.gene038220:CDS 45.0%
GCTCAACTCTTACATCTGCA+AGG + chr5.4:71238802-71238821 MS.gene038220:intron 45.0%
GGAAGTTCAGGTCAAGTAAG+TGG + chr5.4:71238541-71238560 MS.gene038220:intron 45.0%
GTAAGGCACATGAACCACAA+TGG + chr5.4:71237384-71237403 MS.gene038220:intron 45.0%
GTTGGAACTAGCACAAGTCA+AGG - chr5.4:71237748-71237767 None:intergenic 45.0%
TAGCACAAGTCAAGGAACGA+TGG - chr5.4:71237740-71237759 None:intergenic 45.0%
TCAGGATATTGTCGCTGCTT+TGG + chr5.4:71236159-71236178 MS.gene038220:CDS 45.0%
TCTCTGCAACAATGCCAACT+TGG + chr5.4:71237209-71237228 MS.gene038220:CDS 45.0%
TCTGATGCGTATGTCAAAGC+AGG + chr5.4:71237677-71237696 MS.gene038220:CDS 45.0%
TCTGGAGGCTACAGTAATTC+AGG + chr5.4:71240028-71240047 MS.gene038220:CDS 45.0%
TGCCTCATCTGTTGAGAGAT+CGG - chr5.4:71236995-71237014 None:intergenic 45.0%
TGCTTCGCAAGTTCTCTAGT+CGG - chr5.4:71236908-71236927 None:intergenic 45.0%
TGGAGATTCTGATCAGAAGC+TGG + chr5.4:71237625-71237644 MS.gene038220:CDS 45.0%
TGGTTCAAGACAATCTGGAG+GGG + chr5.4:71240060-71240079 MS.gene038220:CDS 45.0%
TGGTTTCCCTCCACCTATAA+CGG - chr5.4:71238299-71238318 None:intergenic 45.0%
TTAGGAAGCCGTTATGGCTA+TGG + chr5.4:71237504-71237523 MS.gene038220:intron 45.0%
TTATAGGTGGAGGGAAACCA+AGG + chr5.4:71238299-71238318 MS.gene038220:intron 45.0%
! AATTTTGTAGAGGGCTGTGC+TGG + chr5.4:71236361-71236380 MS.gene038220:intron 45.0%
! AGAAGAAGCGCGGAATAGTA+AGG - chr5.4:71236041-71236060 None:intergenic 45.0%
! AGTGAAAGGATCTTGCTGTG+AGG - chr5.4:71236006-71236025 None:intergenic 45.0%
! ATGATTGGTCGAGCAAGAAC+AGG + chr5.4:71236407-71236426 MS.gene038220:CDS 45.0%
! CAACTGATGTTGCTTCACGT+GGG + chr5.4:71238008-71238027 MS.gene038220:CDS 45.0%
! CCCAACTTGAAGCATCTGAT+CGG - chr5.4:71237128-71237147 None:intergenic 45.0%
! CCGATCAGATGCTTCAAGTT+GGG + chr5.4:71237125-71237144 MS.gene038220:CDS 45.0%
! GAAGAAGCGCGGAATAGTAA+GGG - chr5.4:71236040-71236059 None:intergenic 45.0%
! GCCTGTTTTGTGAGACTGTT+TGG - chr5.4:71236787-71236806 None:intergenic 45.0%
! TCTGGTGGATCAAGCTCATA+TGG + chr5.4:71240088-71240107 MS.gene038220:CDS 45.0%
! TCTGGTTCAAGACAATCTGG+AGG + chr5.4:71240058-71240077 MS.gene038220:CDS 45.0%
! TTGTTTGCTGAATCCACCAG+AGG - chr5.4:71240194-71240213 None:intergenic 45.0%
!! AGTAATTCAGGCGGGTTTTC+TGG + chr5.4:71240040-71240059 MS.gene038220:CDS 45.0%
!! ATTCCATGTGAGGCATTGCA+TGG + chr5.4:71237914-71237933 MS.gene038220:CDS 45.0%
!! CACCAAGCTTTTTCCCATTC+AGG + chr5.4:71236195-71236214 MS.gene038220:CDS 45.0%
!! GATCAGCGTCACGTTTTGTT+TGG - chr5.4:71237868-71237887 None:intergenic 45.0%
!! TCTGGTGGATTCAGCAAACA+AGG + chr5.4:71240193-71240212 MS.gene038220:CDS 45.0%
!!! AGCAAACAAGGTGGTTTTGG+TGG + chr5.4:71240205-71240224 MS.gene038220:CDS 45.0%
!!! CAAGGTGGTTTTGGTGGATT+CGG + chr5.4:71240211-71240230 MS.gene038220:CDS 45.0%
!!! CGATCTGGTTCTTTTGTTGG+TGG + chr5.4:71240001-71240020 MS.gene038220:CDS 45.0%
!!! GGTTTTGGAGATTTTCGGTC+GGG + chr5.4:71240268-71240287 MS.gene038220:CDS 45.0%
!!! TGCTTTTGGGATACCCATCA+TGG + chr5.4:71236445-71236464 MS.gene038220:CDS 45.0%
!!! TTGTTAATTTATTTTTTTAA+TGG + chr5.4:71239829-71239848 MS.gene038220:intron 5.0%
AAGCTGGGAATTAAGGCAGG+AGG - chr5.4:71239464-71239483 None:intergenic 50.0%
AGGACTATTGAGCGCGATGT+AGG + chr5.4:71239304-71239323 MS.gene038220:CDS 50.0%
AGTCTTGCCGTTATAGGTGG+AGG + chr5.4:71238289-71238308 MS.gene038220:intron 50.0%
AGTTGGGTTCCAGGAAGATG+TGG + chr5.4:71237141-71237160 MS.gene038220:CDS 50.0%
CACAGGCAAGCTGGGAATTA+AGG - chr5.4:71239471-71239490 None:intergenic 50.0%
CATTGACAAGGAGGGTAGAC+TGG + chr5.4:71238257-71238276 MS.gene038220:intron 50.0%
CCTCATCTGTTGAGAGATCG+GGG - chr5.4:71236993-71237012 None:intergenic 50.0%
CGATGTCAATGGGGGGAAAA+AGG - chr5.4:71238072-71238091 None:intergenic 50.0%
GACATGCACCACGAATGATC+TGG + chr5.4:71238917-71238936 MS.gene038220:intron 50.0%
GACTAGAGAACTTGCGAAGC+AGG + chr5.4:71236907-71236926 MS.gene038220:CDS 50.0%
GAGGCTACAGTAATTCAGGC+GGG + chr5.4:71240032-71240051 MS.gene038220:CDS 50.0%
GATTCAGGCAGTAGATCTGG+TGG + chr5.4:71240166-71240185 MS.gene038220:CDS 50.0%
GCCCAGTGATGCAGTATCAA+CGG - chr5.4:71239918-71239937 None:intergenic 50.0%
GCCGATCAGATGCTTCAAGT+TGG + chr5.4:71237124-71237143 MS.gene038220:CDS 50.0%
GCCGTTGATACTGCATCACT+GGG + chr5.4:71239914-71239933 MS.gene038220:CDS 50.0%
GCCTCATCTGTTGAGAGATC+GGG - chr5.4:71236994-71237013 None:intergenic 50.0%
GGAGGCTACAGTAATTCAGG+CGG + chr5.4:71240031-71240050 MS.gene038220:CDS 50.0%
GGTGATTCAGGCAGTAGATC+TGG + chr5.4:71240163-71240182 MS.gene038220:CDS 50.0%
GGTTCAAGACAATCTGGAGG+GGG + chr5.4:71240061-71240080 MS.gene038220:CDS 50.0%
GTCTTGAGATCGCGAAGCTT+GGG + chr5.4:71236131-71236150 MS.gene038220:CDS 50.0%
GTCTTGCCGTTATAGGTGGA+GGG + chr5.4:71238290-71238309 MS.gene038220:intron 50.0%
GTTGATACTGCATCACTGGG+CGG + chr5.4:71239917-71239936 MS.gene038220:CDS 50.0%
TCTCCATGCAATGCCTCACA+TGG - chr5.4:71237920-71237939 None:intergenic 50.0%
TCTGATCAGAAGCTGGCAGA+TGG + chr5.4:71237632-71237651 MS.gene038220:CDS 50.0%
TGCCGTTGATACTGCATCAC+TGG + chr5.4:71239913-71239932 MS.gene038220:CDS 50.0%
TGGTGTTTCACAGGCAAGCT+GGG - chr5.4:71239479-71239498 None:intergenic 50.0%
TTGATATGGCAGGCGAGGAA+AGG + chr5.4:71236859-71236878 MS.gene038220:intron 50.0%
! ACTGGTCGTGCTGGTAAGAA+AGG + chr5.4:71239238-71239257 MS.gene038220:CDS 50.0%
! ACTTGCGAAGCAGGTTGAGA+AGG + chr5.4:71236916-71236935 MS.gene038220:CDS 50.0%
! AGGAAAGGATCCTCTGGCTT+TGG + chr5.4:71236874-71236893 MS.gene038220:CDS 50.0%
! AGGATCTTGCTGTGAGGTGA+CGG - chr5.4:71236000-71236019 None:intergenic 50.0%
! AGTAGATCTGGTGGATCCTC+TGG + chr5.4:71240175-71240194 MS.gene038220:CDS 50.0%
! ATTTGGTGATCGTCGTGGCA+GGG + chr5.4:71240303-71240322 MS.gene038220:CDS 50.0%
! CAATCTGGAGGGGGTTTTTC+TGG + chr5.4:71240070-71240089 MS.gene038220:CDS 50.0%
! GATATAGCGGTTGGTACACC+TGG + chr5.4:71237031-71237050 MS.gene038220:CDS 50.0%
! GATTTTCGGTCGGGTAAACC+TGG + chr5.4:71240277-71240296 MS.gene038220:CDS 50.0%
! GCAACTGATGTTGCTTCACG+TGG + chr5.4:71238007-71238026 MS.gene038220:CDS 50.0%
! GGATCAAGCTCTGGTCGTTT+CGG + chr5.4:71240127-71240146 MS.gene038220:CDS 50.0%
! GGTGGATTCAGCAAACAAGG+TGG + chr5.4:71240196-71240215 MS.gene038220:CDS 50.0%
! TCCTTTGGTTCCGGTGATTC+AGG + chr5.4:71240151-71240170 MS.gene038220:CDS 50.0%
! TTGGTGTTTCACAGGCAAGC+TGG - chr5.4:71239480-71239499 None:intergenic 50.0%
! TTTGGTTGATATGGCAGGCG+AGG + chr5.4:71236854-71236873 MS.gene038220:intron 50.0%
!! ACGCTTGCTGGCTTCAGAAA+CGG + chr5.4:71237965-71237984 MS.gene038220:CDS 50.0%
!! AGATATGGCGGATCAAGCTC+TGG + chr5.4:71240118-71240137 MS.gene038220:CDS 50.0%
!! GATGCTTCAAGTTGGGTTCC+AGG + chr5.4:71237132-71237151 MS.gene038220:CDS 50.0%
!! GGTGGTGGAGAAGAGAATCT+CGG - chr5.4:71235963-71235982 None:intergenic 50.0%
!! GTCGCTGCTTTGGAGAAGAA+AGG + chr5.4:71236169-71236188 MS.gene038220:CDS 50.0%
!! GTCGGTACTTGGTGTTTCAC+AGG - chr5.4:71239488-71239507 None:intergenic 50.0%
!! TTTAGTGGTGGCGGCAGATT+TGG + chr5.4:71239941-71239960 MS.gene038220:CDS 50.0%
!!! GGATCCTCTGGCTTTGGTTT+TGG + chr5.4:71236880-71236899 MS.gene038220:CDS 50.0%
!!! GGCCGATCTGGTTCTTTTGT+TGG + chr5.4:71239998-71240017 MS.gene038220:CDS 50.0%
!!! TCTTTTGTTGGTGGCCGTTC+TGG + chr5.4:71240010-71240029 MS.gene038220:CDS 50.0%
CACGACCAGTTCGTCCAGAT+CGG - chr5.4:71239228-71239247 None:intergenic 55.0%
CAGAGAGAAAGGACGCTTGC+TGG + chr5.4:71237953-71237972 MS.gene038220:CDS 55.0%
CAGCAAGCGTCCTTTCTCTC+TGG - chr5.4:71237955-71237974 None:intergenic 55.0%
CCCCGATCTCTCAACAGATG+AGG + chr5.4:71236990-71237009 MS.gene038220:CDS 55.0%
CGCGAAGCTTGGGATTTCTC+AGG + chr5.4:71236141-71236160 MS.gene038220:CDS 55.0%
CTACGAGTCGGCGCCTAATT+TGG + chr5.4:71236943-71236962 MS.gene038220:CDS 55.0%
GCCTGAATCACCGGAACCAA+AGG - chr5.4:71240155-71240174 None:intergenic 55.0%
GCGCTTCTTCAACCCTCTCA+CGG + chr5.4:71235918-71235937 MS.gene038220:CDS 55.0%
GGCAAGCTGGGAATTAAGGC+AGG - chr5.4:71239467-71239486 None:intergenic 55.0%
GGTCGAGCAAGAACAGGAAC+TGG + chr5.4:71236413-71236432 MS.gene038220:CDS 55.0%
GGTCTTGAGATCGCGAAGCT+TGG + chr5.4:71236130-71236149 MS.gene038220:CDS 55.0%
GGTGGAGAAGAGAATCTCGG+CGG - chr5.4:71235960-71235979 None:intergenic 55.0%
GTGCTGGAACCTGCTATGCA+AGG + chr5.4:71236377-71236396 MS.gene038220:CDS 55.0%
GTTCACCGATCTGGACGAAC+TGG + chr5.4:71239220-71239239 MS.gene038220:CDS 55.0%
TCGGGTAAACCTGGCGCATT+TGG + chr5.4:71240286-71240305 MS.gene038220:CDS 55.0%
TCTGGTCGTTTCGGCTCCTT+TGG + chr5.4:71240136-71240155 MS.gene038220:CDS 55.0%
! AGAAGCGCGTCTGAGGATAG+TGG - chr5.4:71235906-71235925 None:intergenic 55.0%
! AGATCTGGTGGATCCTCTGG+TGG + chr5.4:71240178-71240197 MS.gene038220:CDS 55.0%
! CATTTGGTGATCGTCGTGGC+AGG + chr5.4:71240302-71240321 MS.gene038220:CDS 55.0%
! CGTTTCGGCTCCTTTGGTTC+CGG + chr5.4:71240142-71240161 MS.gene038220:CDS 55.0%
! GCATCACTGGGCGGATTTAG+TGG + chr5.4:71239926-71239945 MS.gene038220:CDS 55.0%
! TCACTGGGCGGATTTAGTGG+TGG + chr5.4:71239929-71239948 MS.gene038220:CDS 55.0%
! TCTGGAGGGGGTTTTTCTGG+TGG + chr5.4:71240073-71240092 MS.gene038220:CDS 55.0%
!! TCGGATCGCTCTGGTGGATT+CGG + chr5.4:71240241-71240260 MS.gene038220:CDS 55.0%
!! TGGTGGATTCGGTGGTGGTT+CGG + chr5.4:71240222-71240241 MS.gene038220:CDS 55.0%
!! TTTGTTGGTGGCCGTTCTGG+AGG + chr5.4:71240013-71240032 MS.gene038220:CDS 55.0%
!!! GGTGGATTCGGTGGTGGTTT+TGG + chr5.4:71240253-71240272 MS.gene038220:CDS 55.0%
!!! GGTGGTTTTGGTGGATTCGG+TGG + chr5.4:71240214-71240233 MS.gene038220:CDS 55.0%
!!! GGTTTTGGTGGATTCGGTGG+TGG + chr5.4:71240217-71240236 MS.gene038220:CDS 55.0%
CAGGCGAGGAAAGGATCCTC+TGG + chr5.4:71236868-71236887 MS.gene038220:intron 60.0%
CGACGATCACCAAATGCGCC+AGG - chr5.4:71240298-71240317 None:intergenic 60.0%
CGCGAGAAGCAGAAGAAGCG+CGG - chr5.4:71236051-71236070 None:intergenic 60.0%
GCTTCTTCTGCTTCTCGCGC+TGG + chr5.4:71236052-71236071 MS.gene038220:CDS 60.0%
GGAGAAGAGAATCTCGGCGG+CGG - chr5.4:71235957-71235976 None:intergenic 60.0%
GGCGCCAAAACCAAAGCCAG+AGG - chr5.4:71236887-71236906 None:intergenic 60.0%
TCTGGACGAACTGGTCGTGC+TGG + chr5.4:71239229-71239248 MS.gene038220:CDS 60.0%
! CTGGGCGGATTTAGTGGTGG+CGG + chr5.4:71239932-71239951 MS.gene038220:CDS 60.0%
! GGCGCATTTGGTGATCGTCG+TGG + chr5.4:71240298-71240317 MS.gene038220:CDS 60.0%
! GGGTTGAAGAAGCGCGTCTG+AGG - chr5.4:71235913-71235932 None:intergenic 60.0%
!! AGATTTGGTGGTGGCGGTGG+TGG + chr5.4:71239956-71239975 MS.gene038220:CDS 60.0%
!! AGTGGTGGCGGCAGATTTGG+TGG + chr5.4:71239944-71239963 MS.gene038220:CDS 60.0%
!! CGGTGGTGGATTTGGTGGTG+GGG + chr5.4:71239970-71239989 MS.gene038220:CDS 60.0%
!! GATCGCTCTGGTGGATTCGG+TGG + chr5.4:71240244-71240263 MS.gene038220:CDS 60.0%
!! GCGGTGGTGGATTTGGTGGT+GGG + chr5.4:71239969-71239988 MS.gene038220:CDS 60.0%
!! GGTGGTGGATTTGGTGGTGG+GGG + chr5.4:71239971-71239990 MS.gene038220:CDS 60.0%
!! TGTGAGGTGACGGACCTCAG+TGG - chr5.4:71235990-71236009 None:intergenic 60.0%
AAGAGAATCTCGGCGGCGGC+GGG - chr5.4:71235953-71235972 None:intergenic 65.0%
GAAGAGAATCTCGGCGGCGG+CGG - chr5.4:71235954-71235973 None:intergenic 65.0%
GGGGATGGTTCGCCGTGAGA+GGG - chr5.4:71235933-71235952 None:intergenic 65.0%
! GGTGGTGGTTCGGATCGCTC+TGG + chr5.4:71240232-71240251 MS.gene038220:CDS 65.0%
! GGTGGTTCGGATCGCTCTGG+TGG + chr5.4:71240235-71240254 MS.gene038220:CDS 65.0%
!! CGCTCTGGTGGATTCGGTGG+TGG + chr5.4:71240247-71240266 MS.gene038220:CDS 65.0%
!! GAGGTGACGGACCTCAGTGG+CGG - chr5.4:71235987-71236006 None:intergenic 65.0%
!! GGATTTGGTGGTGGGGGTGG+TGG + chr5.4:71239977-71239996 MS.gene038220:CDS 65.0%
!! GGCAGATTTGGTGGTGGCGG+TGG + chr5.4:71239953-71239972 MS.gene038220:CDS 65.0%
!! GGCGGCAGATTTGGTGGTGG+CGG + chr5.4:71239950-71239969 MS.gene038220:CDS 65.0%
!! GGCGGTGGTGGATTTGGTGG+TGG + chr5.4:71239968-71239987 MS.gene038220:CDS 65.0%
!! GGTGGATTTGGTGGTGGGGG+TGG + chr5.4:71239974-71239993 MS.gene038220:CDS 65.0%
!! GGTGGCGGCAGATTTGGTGG+TGG + chr5.4:71239947-71239966 MS.gene038220:CDS 65.0%
!! GGTGGCGGTGGTGGATTTGG+TGG + chr5.4:71239965-71239984 MS.gene038220:CDS 65.0%
!! GGTGGTGGCGGTGGTGGATT+TGG + chr5.4:71239962-71239981 MS.gene038220:CDS 65.0%
AGAGAATCTCGGCGGCGGCG+GGG - chr5.4:71235952-71235971 None:intergenic 70.0%
CGGGGATGGTTCGCCGTGAG+AGG - chr5.4:71235934-71235953 None:intergenic 70.0%
!! GTGACGGACCTCAGTGGCGG+CGG - chr5.4:71235984-71236003 None:intergenic 70.0%
AATCTCGGCGGCGGCGGGGA+TGG - chr5.4:71235948-71235967 None:intergenic 75.0%
ACGGACCTCAGTGGCGGCGG+TGG - chr5.4:71235981-71236000 None:intergenic 75.0%
CTCCACCACCGCCGCCACTG+AGG + chr5.4:71235973-71235992 MS.gene038220:CDS 75.0%
GACCTCAGTGGCGGCGGTGG+TGG - chr5.4:71235978-71235997 None:intergenic 75.0%
! GGTGGGGGTGGTGGCCGATC+TGG + chr5.4:71239986-71240005 MS.gene038220:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 71235896 71240330 71235896 ID=MS.gene038220
chr5.4 mRNA 71235896 71240330 71235896 ID=MS.gene038220.t1;Parent=MS.gene038220
chr5.4 exon 71235896 71236216 71235896 ID=MS.gene038220.t1.exon1;Parent=MS.gene038220.t1
chr5.4 CDS 71235896 71236216 71235896 ID=cds.MS.gene038220.t1;Parent=MS.gene038220.t1
chr5.4 exon 71236371 71236498 71236371 ID=MS.gene038220.t1.exon2;Parent=MS.gene038220.t1
chr5.4 CDS 71236371 71236498 71236371 ID=cds.MS.gene038220.t1;Parent=MS.gene038220.t1
chr5.4 exon 71236871 71237282 71236871 ID=MS.gene038220.t1.exon3;Parent=MS.gene038220.t1
chr5.4 CDS 71236871 71237282 71236871 ID=cds.MS.gene038220.t1;Parent=MS.gene038220.t1
chr5.4 exon 71237623 71237721 71237623 ID=MS.gene038220.t1.exon4;Parent=MS.gene038220.t1
chr5.4 CDS 71237623 71237721 71237623 ID=cds.MS.gene038220.t1;Parent=MS.gene038220.t1
chr5.4 exon 71237830 71238054 71237830 ID=MS.gene038220.t1.exon5;Parent=MS.gene038220.t1
chr5.4 CDS 71237830 71238054 71237830 ID=cds.MS.gene038220.t1;Parent=MS.gene038220.t1
chr5.4 exon 71239181 71239342 71239181 ID=MS.gene038220.t1.exon6;Parent=MS.gene038220.t1
chr5.4 CDS 71239181 71239342 71239181 ID=cds.MS.gene038220.t1;Parent=MS.gene038220.t1
chr5.4 exon 71239902 71240330 71239902 ID=MS.gene038220.t1.exon7;Parent=MS.gene038220.t1
chr5.4 CDS 71239902 71240330 71239902 ID=cds.MS.gene038220.t1;Parent=MS.gene038220.t1
Gene Sequence

>MS.gene038220

ATGATTACCACTATCCTCAGACGCGCTTCTTCAACCCTCTCACGGCGAACCATCCCCGCCGCCGCCGAGATTCTCTTCTCCACCACCGCCGCCACTGAGGTCCGTCACCTCACAGCAAGATCCTTTCACTCTAAATCACAACCCTTACTATTCCGCGCTTCTTCTGCTTCTCGCGCTGGTTACGCCGCCGAAGCTTTTCGTTTTGAAGAACCTTCGAAATCGAATAGCGATGAGGGTCTTGAGATCGCGAAGCTTGGGATTTCTCAGGATATTGTCGCTGCTTTGGAGAAGAAAGGAATCACCAAGCTTTTTCCCATTCAGGTTTGCGTTCAATTAGGGTTTTGACACTAATTACGTAAATTATGATTTGTGATTAATTGTTACTTCTAATTATTAAATTAAGTAAATTTAAGCTGTTGTTAACTTTGTTTATCAAAAAAATAAACTTTATTTGTTAATTTGTTGAATTTTGTAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCAAGAACAGGAACTGGAAAAACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAACATGGGTTTGTTCTTTAGATATTATTGGTTAATTAGTGTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTGAATTGAAGCTAGATATAGGCTCTGTTTGGATAAACAGCTTATTTGCAGCTTATAGCATAAGTGCTTATGTATAAGCTATTTCTATAGCAAAAACTGAAATGAAGTTAAATTGTTTTTGGTATAATCTATAAACTGTTTTGGTTAGATATCTTAGAGAATTTGTGAAAATAAGTTGAAAACAGCTTATGAACAATGTCATAAGCTGTTTTTAGAAGTTCTCCCAAACAGTCTCACAAAACAGGCCCATAGTGTAATTGGTATCTTTAACTGTTAAAGTTTACATTTTTTTTTTTGGTTGATATGGCAGGCGAGGAAAGGATCCTCTGGCTTTGGTTTTGGCGCCGACTAGAGAACTTGCGAAGCAGGTTGAGAAGGAATTCTACGAGTCGGCGCCTAATTTGGATACTATCTGTGTTTATGGGGGTACCCCGATCTCTCAACAGATGAGGCAGCTTGATTATGGTGTTGATATAGCGGTTGGTACACCTGGACGAATTATTGATCTTCTTAATAGAGGTGCTCTAAATTTGAAAGAAGTCCAGTTTGTTATTCTTGACGAAGCCGATCAGATGCTTCAAGTTGGGTTCCAGGAAGATGTGGAGAAGATATTGGAGAGATTACCCACTGAGAGACAAACTCTCATGTTCTCTGCAACAATGCCAACTTGGATAAAGCAGTTAACACGCAATTACCTGAAAAATCCTCTAACCATTGATCTTGTAAGTATTGAGGATATGCATTATTGAAGTTTTGTCAAATGTTGCTTGAATAGCCTCCTACCATGATTAAAATGTTGAAACTAAACCTATTAACTGTCGTAGTAAGGCACATGAACCACAATGGAATATTATAACATTTGATTGATAGAAAAAATTTGGGTTTCAATGAATTTGTTTTCATCCTTCATAAGATAAGACAATGTAAATTTTTGTATATGAATTTAGGAAGCCGTTATGGCTATGGTCATTTAGAAGTATATGGAATGATACTCTTTGAGATCAACAGTCAGTCATTTTGGTTTATTGAATACTATTTAACTGTGAACTTATTGGTACCTAGGTTGGAGATTCTGATCAGAAGCTGGCAGATGGAATTTCACTATACTCGATTCTATCTGATGCGTATGTCAAAGCAGGAATTATTGTTCCTCTAATTAAAGTATGCCTTCTGTTACCATCGTTCCTTGACTTGTGCTAGTTCCAACTAATGATCCATCATATAATCCTCTCAATTTTGTTTTCTCTTCGAAAAATAATCCTCTTGTAGGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACCCAAACAAAACGTGACGCTGATCGAATATCACATGGCATGTCAAAAAGCATTCCATGTGAGGCATTGCATGGAGATATATCACAAGTCCAGAGAGAAAGGACGCTTGCTGGCTTCAGAAACGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTCGATATACCTAATGTTGATCTTGTGAGTTCCTTTTACCTTTTTCCCCCCATTGACATCGTAAAGTTATCCAATATATTTTATTCCATATATTAATACAGATATAAAATGATGTAACCCTGTTATAACAAAAAAATGTTTAGTCCCATCTTAGGTGGGTGATACATACATGTGTGTACATGACTTATAATAGCATTCTTTAAAAAAAAAAAAAAACTTATAAAAGCATTGACAAGGAGGGTAGACTGGTCAGAGAATAGTCTTGCCGTTATAGGTGGAGGGAAACCAAGGAAAATCTCAGTCCAAATCTAAGAGAAATATTTGGATTTAAATGGCCGGTTGATGATAAAATGTTATGCGAAAGCGCATTGGTTGTTTCTGTCATTTGTAGTTCAAGAGAAATCTCTTATGTTCTCTCCTACTTTCTGGATAGTCTGTTGACTATGTACACATTTTGTTATTGTGTGAACTGGATTTTCTATTCTTTGCACATGCATTAATTTTTTATTTGGAAGTTCAGGTCAAGTAAGTGGTAGATTTTAGTGAACAGCTACTGATATTTATCATAAGTATTTCCTCCTAATGTTTTGAAGTGTTCATTTCAGATCATATAGTATTCTTCAAAATTTGCATTACGCATGCTACTTCTGTGCTTCTATAATTTTTTTTGTTATTATTTAACTATCTCTATGGCACGGATTTAAACATTCATTCGTTCATTCTTGTGTGCTATGCTGTCTGAGCTTCAAATGGGATAATTTTGTGACAGATGCTCAACTCTTACATCTGCAAGGGAAATATTGGAATAAATGTTTTTTTGTTTTCGGATGTAGAAAATTAGATATTAGAATCTTGGATGTAAGGGGTAATGATAGGATCAAAAAACGACATGCACCACGAATGATCTGGAAGTCTTTTGTGTTTAGGTGTGTTCTTGTATCTTAATGGGTTCTGTTCATGGTTCTATACATTTTGGAACATTATTAGGTTTTTTTTGGTGTTATTTTTTTGTATGCATCTGGTCTTTTTTGATTTCATATGCCTAAATTAGTGTAATAAGTTACATGCATATGCAAATACTTTAACGCAACAATTTTGTTAATATGTTATTTTCTATATATGTGAAATTTGAGCTTTTTTCCTCATATAGGTGATTCATTATGAACTTCCCAATAATTCAGAGATATTTGTTCACCGATCTGGACGAACTGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTTTATACACAAGATCAATCCAGGACTCTTAGGACTATTGAGCGCGATGTAGGCTGTAAATTTTCAGAGGTACTCTCCCTGCATATTATCCATTTTCATCTGTCAATCTTTATTGCTTGAAGTTGCACCTTGTTTATTACTATTTTTCTGGTTTTAGAAATTAGACTACATTTAAAGGGTAGCATATCCTCCTGCCTTAATTCCCAGCTTGCCTGTGAAACACCAAGTACCGACAAAACTCAAGTTACTAATAATCTAAATTTAGTCTGGCACTCCTCAAGTCTTATAAAAGTGCCCACTTGTTTTCATATTATATTCTGTTTTTAAAGTTTAAAACTGCTAGAATGAAATTACATGTGGAACCCATCAATTTAGTTTCAACCAACAAGAGTTGTGTTTTTCACATTATATTCGAAGTTGTGTTCCTAGCTCTTAATGTTTTCATTCTTTCCTATACAGAATTGTGAAAACAAAGTGATAATTACTATCCTCAAGTTATTATTATATCATTATTTTATTCATAGTGTGATTGTTGCTACAATTACTTTATGCCAGTTGTTAATTTATTTTTTTAATGGTCTGTTAAGATTAATGATCACTCTTTTTTCCAAATATTCACGTTTAACAGTTACCAAAAATTGCCGTTGATACTGCATCACTGGGCGGATTTAGTGGTGGCGGCAGATTTGGTGGTGGCGGTGGTGGATTTGGTGGTGGGGGTGGTGGCCGATCTGGTTCTTTTGTTGGTGGCCGTTCTGGAGGCTACAGTAATTCAGGCGGGTTTTCTGGTTCAAGACAATCTGGAGGGGGTTTTTCTGGTGGATCAAGCTCATATGGTGAAAATAGATATGGCGGATCAAGCTCTGGTCGTTTCGGCTCCTTTGGTTCCGGTGATTCAGGCAGTAGATCTGGTGGATCCTCTGGTGGATTCAGCAAACAAGGTGGTTTTGGTGGATTCGGTGGTGGTTCGGATCGCTCTGGTGGATTCGGTGGTGGTTTTGGAGATTTTCGGTCGGGTAAACCTGGCGCATTTGGTGATCGTCGTGGCAGGGATTAG
Protein sequence

>MS.gene038220.t1

MITTILRRASSTLSRRTIPAAAEILFSTTAATEVRHLTARSFHSKSQPLLFRASSASRAGYAAEAFRFEEPSKSNSDEGLEIAKLGISQDIVAALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGKDPLALVLAPTRELAKQVEKEFYESAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPTERQTLMFSATMPTWIKQLTRNYLKNPLTIDLVGDSDQKLADGISLYSILSDAYVKAGIIVPLIKEHAKGGKCIVFTQTKRDADRISHGMSKSIPCEALHGDISQVQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILVYTQDQSRTLRTIERDVGCKFSELPKIAVDTASLGGFSGGGRFGGGGGGFGGGGGGRSGSFVGGRSGGYSNSGGFSGSRQSGGGFSGGSSSYGENRYGGSSSGRFGSFGSGDSGSRSGGSSGGFSKQGGFGGFGGGSDRSGGFGGGFGDFRSGKPGAFGDRRGRD