Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040957.t1 | XP_013441999.1 | 98.4 | 316 | 5 | 0 | 1 | 316 | 1 | 316 | 5.30E-177 | 630.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040957.t1 | P26690 | 62.9 | 315 | 113 | 4 | 2 | 315 | 3 | 314 | 2.6e-108 | 393.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040957.t1 | A0A072TEP5 | 98.4 | 316 | 5 | 0 | 1 | 316 | 1 | 316 | 3.8e-177 | 630.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003638 | MS.gene040957 | PPI |
| MS.gene98697 | MS.gene040957 | PPI |
| MS.gene008794 | MS.gene040957 | PPI |
| MS.gene91446 | MS.gene040957 | PPI |
| MS.gene008793 | MS.gene040957 | PPI |
| MS.gene53169 | MS.gene040957 | PPI |
| MS.gene93058 | MS.gene040957 | PPI |
| MS.gene62620 | MS.gene040957 | PPI |
| MS.gene056488 | MS.gene040957 | PPI |
| MS.gene97981 | MS.gene040957 | PPI |
| MS.gene54933 | MS.gene040957 | PPI |
| MS.gene93783 | MS.gene040957 | PPI |
| MS.gene87111 | MS.gene040957 | PPI |
| MS.gene93059 | MS.gene040957 | PPI |
| MS.gene72560 | MS.gene040957 | PPI |
| MS.gene99693 | MS.gene040957 | PPI |
| MS.gene056487 | MS.gene040957 | PPI |
| MS.gene55382 | MS.gene040957 | PPI |
| MS.gene040151 | MS.gene040957 | PPI |
| MS.gene040957 | MS.gene93783 | PPI |
| MS.gene062932 | MS.gene040957 | PPI |
| MS.gene95889 | MS.gene040957 | PPI |
| MS.gene50700 | MS.gene040957 | PPI |
| MS.gene23359 | MS.gene040957 | PPI |
| MS.gene42146 | MS.gene040957 | PPI |
| MS.gene97980 | MS.gene040957 | PPI |
| MS.gene024362 | MS.gene040957 | PPI |
| MS.gene42873 | MS.gene040957 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040957.t1 | MTR_0374s0050 | 98.418 | 316 | 5 | 0 | 1 | 316 | 1 | 316 | 0.0 | 640 |
| MS.gene040957.t1 | MTR_3g083130 | 63.987 | 311 | 109 | 3 | 6 | 315 | 7 | 315 | 5.39e-143 | 406 |
| MS.gene040957.t1 | MTR_5g097910 | 63.934 | 305 | 107 | 3 | 1 | 305 | 1 | 302 | 3.63e-130 | 373 |
| MS.gene040957.t1 | MTR_5g097940 | 63.934 | 305 | 107 | 3 | 1 | 305 | 1 | 302 | 3.63e-130 | 373 |
| MS.gene040957.t1 | MTR_5g097900 | 63.934 | 305 | 107 | 3 | 1 | 305 | 1 | 302 | 4.00e-130 | 373 |
| MS.gene040957.t1 | MTR_4g072350 | 52.322 | 323 | 143 | 2 | 1 | 315 | 1 | 320 | 8.54e-116 | 337 |
| MS.gene040957.t1 | MTR_4g072320 | 52.469 | 324 | 137 | 3 | 1 | 316 | 1 | 315 | 1.74e-115 | 336 |
| MS.gene040957.t1 | MTR_6g073110 | 52.025 | 321 | 143 | 2 | 1 | 313 | 1 | 318 | 1.66e-113 | 331 |
| MS.gene040957.t1 | MTR_4g072360 | 50.000 | 324 | 151 | 2 | 1 | 316 | 1 | 321 | 1.11e-110 | 324 |
| MS.gene040957.t1 | MTR_4g036845 | 43.464 | 306 | 158 | 6 | 20 | 315 | 14 | 314 | 2.86e-85 | 259 |
| MS.gene040957.t1 | MTR_8g070095 | 39.482 | 309 | 172 | 5 | 18 | 315 | 14 | 318 | 1.00e-74 | 232 |
| MS.gene040957.t1 | MTR_8g070115 | 38.170 | 317 | 181 | 4 | 8 | 315 | 4 | 314 | 5.62e-71 | 223 |
| MS.gene040957.t1 | MTR_7g063580 | 42.960 | 277 | 141 | 5 | 50 | 315 | 83 | 353 | 8.87e-71 | 223 |
| MS.gene040957.t1 | MTR_4g021350 | 41.368 | 307 | 163 | 7 | 18 | 315 | 14 | 312 | 7.40e-66 | 209 |
| MS.gene040957.t1 | MTR_4g021350 | 41.993 | 281 | 155 | 5 | 18 | 298 | 14 | 286 | 8.20e-65 | 206 |
| MS.gene040957.t1 | MTR_7g070500 | 38.961 | 308 | 168 | 6 | 19 | 315 | 22 | 320 | 1.23e-61 | 199 |
| MS.gene040957.t1 | MTR_7g070500 | 40.433 | 277 | 156 | 4 | 19 | 295 | 22 | 289 | 2.03e-60 | 195 |
| MS.gene040957.t1 | MTR_4g021410 | 41.445 | 263 | 140 | 4 | 41 | 303 | 35 | 283 | 9.64e-59 | 191 |
| MS.gene040957.t1 | MTR_4g021410 | 41.473 | 258 | 137 | 4 | 46 | 303 | 3 | 246 | 7.30e-58 | 187 |
| MS.gene040957.t1 | MTR_4g021450 | 39.437 | 284 | 149 | 5 | 41 | 315 | 35 | 304 | 3.91e-56 | 184 |
| MS.gene040957.t1 | MTR_4g072060 | 37.584 | 298 | 170 | 7 | 20 | 307 | 11 | 302 | 9.12e-56 | 183 |
| MS.gene040957.t1 | MTR_4g021410 | 41.818 | 220 | 115 | 3 | 84 | 303 | 1 | 207 | 4.29e-46 | 155 |
| MS.gene040957.t1 | MTR_4g021450 | 39.834 | 241 | 123 | 4 | 84 | 315 | 1 | 228 | 3.01e-44 | 151 |
| MS.gene040957.t1 | MTR_6g072650 | 46.309 | 149 | 50 | 2 | 175 | 315 | 10 | 136 | 2.48e-37 | 130 |
| MS.gene040957.t1 | MTR_4g021450 | 38.043 | 184 | 101 | 3 | 141 | 315 | 6 | 185 | 1.28e-36 | 130 |
| MS.gene040957.t1 | MTR_6g072710 | 52.336 | 107 | 51 | 0 | 193 | 299 | 1 | 107 | 4.21e-32 | 115 |
| MS.gene040957.t1 | MTR_3g449790 | 25.581 | 301 | 161 | 9 | 45 | 309 | 83 | 356 | 3.15e-17 | 81.6 |
| MS.gene040957.t1 | MTR_3g449790 | 25.581 | 301 | 167 | 10 | 45 | 309 | 83 | 362 | 7.99e-16 | 77.4 |
| MS.gene040957.t1 | MTR_3g092140 | 23.793 | 290 | 166 | 9 | 45 | 297 | 79 | 350 | 3.92e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040957.t1 | AT1G59960 | 51.385 | 325 | 148 | 3 | 1 | 315 | 1 | 325 | 1.04e-122 | 355 |
| MS.gene040957.t1 | AT1G59950 | 55.082 | 305 | 128 | 2 | 20 | 315 | 15 | 319 | 1.04e-115 | 337 |
| MS.gene040957.t1 | AT5G62420 | 44.771 | 306 | 155 | 5 | 20 | 315 | 14 | 315 | 5.88e-85 | 258 |
| MS.gene040957.t1 | AT2G37770 | 43.310 | 284 | 149 | 3 | 41 | 315 | 34 | 314 | 1.55e-77 | 239 |
| MS.gene040957.t1 | AT2G37790 | 40.850 | 306 | 167 | 4 | 18 | 315 | 14 | 313 | 2.44e-77 | 239 |
| MS.gene040957.t1 | AT2G37760 | 40.984 | 305 | 161 | 4 | 20 | 315 | 16 | 310 | 2.49e-74 | 231 |
| MS.gene040957.t1 | AT2G37760 | 40.984 | 305 | 161 | 4 | 20 | 315 | 16 | 310 | 2.49e-74 | 231 |
| MS.gene040957.t1 | AT2G37760 | 42.049 | 283 | 154 | 3 | 18 | 300 | 14 | 286 | 3.32e-74 | 230 |
| MS.gene040957.t1 | AT2G37760 | 42.049 | 283 | 154 | 3 | 18 | 300 | 14 | 286 | 3.32e-74 | 230 |
| MS.gene040957.t1 | AT2G37760 | 42.199 | 282 | 153 | 3 | 18 | 299 | 14 | 285 | 3.69e-74 | 230 |
| MS.gene040957.t1 | AT3G53880 | 41.007 | 278 | 152 | 3 | 47 | 315 | 40 | 314 | 2.25e-72 | 226 |
| MS.gene040957.t1 | AT3G53880 | 42.063 | 252 | 143 | 2 | 47 | 298 | 40 | 288 | 1.08e-69 | 219 |
| MS.gene040957.t1 | AT5G01670 | 38.111 | 307 | 170 | 6 | 20 | 315 | 24 | 321 | 1.57e-69 | 219 |
| MS.gene040957.t1 | AT5G01670 | 35.030 | 334 | 170 | 7 | 20 | 315 | 24 | 348 | 1.66e-63 | 204 |
| MS.gene040957.t1 | AT2G37760 | 40.769 | 260 | 142 | 3 | 65 | 315 | 8 | 264 | 2.90e-61 | 196 |
| MS.gene040957.t1 | AT2G37760 | 40.769 | 260 | 142 | 3 | 65 | 315 | 8 | 264 | 2.90e-61 | 196 |
| MS.gene040957.t1 | AT2G21250 | 35.235 | 298 | 177 | 7 | 20 | 307 | 11 | 302 | 5.08e-60 | 194 |
| MS.gene040957.t1 | AT2G21260 | 36.111 | 288 | 168 | 6 | 20 | 297 | 11 | 292 | 1.22e-59 | 193 |
| MS.gene040957.t1 | AT2G37770 | 45.977 | 174 | 91 | 2 | 41 | 214 | 34 | 204 | 1.12e-48 | 164 |
| MS.gene040957.t1 | AT2G21250 | 35.808 | 229 | 131 | 6 | 20 | 238 | 11 | 233 | 6.06e-44 | 150 |
| MS.gene040957.t1 | AT2G21260 | 33.333 | 219 | 134 | 4 | 89 | 297 | 8 | 224 | 1.25e-40 | 142 |
| MS.gene040957.t1 | AT1G06690 | 28.247 | 308 | 164 | 10 | 38 | 309 | 87 | 373 | 1.77e-23 | 99.8 |
| MS.gene040957.t1 | AT5G53580 | 24.567 | 289 | 157 | 12 | 45 | 293 | 80 | 347 | 1.01e-12 | 68.6 |
Find 78 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCCTGAAATTAGAATATT+TGG | 0.170879 | 1.1:-38080903 | MS.gene040957:CDS |
| GCTCTTCAACTTGGTCTAAT+TGG | 0.184953 | 1.1:-38082209 | MS.gene040957:CDS |
| GGTCCAAATATTCTAATTTC+AGG | 0.242698 | 1.1:+38080900 | None:intergenic |
| TCAGTGTGAAGCCTGGAAAT+TGG | 0.295904 | 1.1:-38080856 | MS.gene040957:CDS |
| TTGTGTTCATTCCTAACCTT+TGG | 0.306436 | 1.1:-38079970 | MS.gene040957:CDS |
| TTTGACACTGCATCAATATA+TGG | 0.316665 | 1.1:-38082266 | MS.gene040957:CDS |
| ATGGAAGAATGCCAGAAATT+AGG | 0.323344 | 1.1:-38080773 | MS.gene040957:CDS |
| ATTGTCAGTAACCCAAAGTT+TGG | 0.339991 | 1.1:+38082160 | None:intergenic |
| ACTACCCCAACTGGCCCCTT+TGG | 0.355628 | 1.1:+38080368 | None:intergenic |
| CTTTATCACCTCCAAACTTT+GGG | 0.360927 | 1.1:-38082171 | MS.gene040957:CDS |
| ATAACCGCTTTCTCTCCTTT+AGG | 0.371890 | 1.1:-38080393 | MS.gene040957:CDS |
| AGCTTCTTCTGATGCCAAAC+TGG | 0.376503 | 1.1:+38080447 | None:intergenic |
| TGTGTTCATTCCTAACCTTT+GGG | 0.382649 | 1.1:-38079969 | MS.gene040957:CDS |
| AGGAGCCAAAGGGGCCAGTT+GGG | 0.383611 | 1.1:-38080373 | MS.gene040957:CDS |
| GTAATTGAAGCTATCAAATC+AGG | 0.391570 | 1.1:-38082299 | MS.gene040957:CDS |
| TCTTTATCACCTCCAAACTT+TGG | 0.397007 | 1.1:-38082172 | MS.gene040957:CDS |
| GTTTCCCCATCCCAAAGGTT+AGG | 0.400915 | 1.1:+38079959 | None:intergenic |
| TACGGCAATTCCCAATTTCC+AGG | 0.402725 | 1.1:+38080845 | None:intergenic |
| ATTTGCTATCATTCCTCCTT+CGG | 0.405885 | 1.1:-38080690 | MS.gene040957:CDS |
| CACTGGCATGTTGCATTGGT+TGG | 0.406407 | 1.1:+38082379 | None:intergenic |
| TATGGCTCAGAAGAGGCTTT+AGG | 0.410339 | 1.1:-38082248 | MS.gene040957:CDS |
| AAAACTTGGAAATATTTGAT+TGG | 0.411973 | 1.1:-38080060 | MS.gene040957:CDS |
| CAGTGTGAAGCCTGGAAATT+GGG | 0.412320 | 1.1:-38080855 | MS.gene040957:CDS |
| TTAGGCCTTACAAAATCTAT+AGG | 0.420838 | 1.1:-38080755 | MS.gene040957:CDS |
| TTCATTCCTAACCTTTGGGA+TGG | 0.431912 | 1.1:-38079965 | MS.gene040957:CDS |
| AACTTCATTACTACCCCAAC+TGG | 0.445320 | 1.1:+38080359 | None:intergenic |
| GTATGAGCAAGGGGTGACTA+TGG | 0.448857 | 1.1:-38080116 | MS.gene040957:CDS |
| TGTTATAGGTATGTCTTAGA+TGG | 0.449565 | 1.1:-38080141 | MS.gene040957:intron |
| TTCTCTCCTTTAGGAGCCAA+AGG | 0.450688 | 1.1:-38080384 | MS.gene040957:CDS |
| GTCCAAATATTCTAATTTCA+GGG | 0.456988 | 1.1:+38080901 | None:intergenic |
| TGGACCTTTATTTGATCCAC+TGG | 0.459426 | 1.1:-38080883 | MS.gene040957:CDS |
| TTGGGGTAGTAATGAAGTTA+TGG | 0.468928 | 1.1:-38080355 | MS.gene040957:CDS |
| CATTCCTAACCTTTGGGATG+GGG | 0.471590 | 1.1:-38079963 | MS.gene040957:CDS |
| AACATGCCAGTGATAGCATT+TGG | 0.478930 | 1.1:-38082368 | MS.gene040957:CDS |
| TCTCTCCTTTAGGAGCCAAA+GGG | 0.478990 | 1.1:-38080383 | MS.gene040957:CDS |
| AACAGATTCGTGTCAACAAT+GGG | 0.479432 | 1.1:-38079997 | MS.gene040957:CDS |
| TGGAGTGATTTCTGAAGAGC+AGG | 0.480636 | 1.1:+38082119 | None:intergenic |
| AGGTTAGGAATGAACACAAC+TGG | 0.482133 | 1.1:+38079974 | None:intergenic |
| GGAGAGAATGAAGCAAAACT+TGG | 0.486339 | 1.1:-38080074 | MS.gene040957:CDS |
| TAGGAGCCAAAGGGGCCAGT+TGG | 0.490078 | 1.1:-38080374 | MS.gene040957:CDS |
| TCATTCCTAACCTTTGGGAT+GGG | 0.502283 | 1.1:-38079964 | MS.gene040957:CDS |
| AAGATTTCAGCACAACTTGA+GGG | 0.504815 | 1.1:+38082405 | None:intergenic |
| AGGTGGAGATGAATCCAGTT+TGG | 0.508462 | 1.1:-38080461 | MS.gene040957:CDS |
| TGGCCGATCAGTGTGAAGCC+TGG | 0.510496 | 1.1:-38080863 | MS.gene040957:CDS |
| CTATCACTGGCATGTTGCAT+TGG | 0.517036 | 1.1:+38082375 | None:intergenic |
| CTTACTTGATTGACCGAAGG+AGG | 0.519682 | 1.1:+38080677 | None:intergenic |
| GTCAGTAACCCAAAGTTTGG+AGG | 0.520736 | 1.1:+38082163 | None:intergenic |
| CTGGCCCCTTTGGCTCCTAA+AGG | 0.523489 | 1.1:+38080378 | None:intergenic |
| GTTATTAACTCTTCAGCATA+CGG | 0.525285 | 1.1:+38080827 | None:intergenic |
| AAAAGAATACTGTGAAGCAA+AGG | 0.527118 | 1.1:-38080424 | MS.gene040957:CDS |
| GAAAGGAGTGTGGACATCAA+TGG | 0.528937 | 1.1:-38080792 | MS.gene040957:CDS |
| GAAGATTTCAGCACAACTTG+AGG | 0.530579 | 1.1:+38082404 | None:intergenic |
| TTTCCAGGCTTCACACTGAT+CGG | 0.538948 | 1.1:+38080860 | None:intergenic |
| ACATGGCAAATATATTGCTC+AGG | 0.539501 | 1.1:-38080301 | MS.gene040957:intron |
| GGAGCCAAAGGGGCCAGTTG+GGG | 0.542781 | 1.1:-38080372 | MS.gene040957:CDS |
| TCGGCCAGTGGATCAAATAA+AGG | 0.543601 | 1.1:+38080879 | None:intergenic |
| AAACAGATTCGTGTCAACAA+TGG | 0.549643 | 1.1:-38079998 | MS.gene040957:CDS |
| AAAGAATACTGTGAAGCAAA+GGG | 0.552823 | 1.1:-38080423 | MS.gene040957:CDS |
| CTTAGATGGTTGTATGAGCA+AGG | 0.553980 | 1.1:-38080127 | MS.gene040957:CDS |
| ATAGAAGAAGCTCTTCAACT+TGG | 0.557954 | 1.1:-38082218 | MS.gene040957:CDS |
| ATAACCACATTTGATCTGAA+AGG | 0.559708 | 1.1:-38080809 | MS.gene040957:CDS |
| GCGGTACCAAATGCTATCAC+TGG | 0.564066 | 1.1:+38082362 | None:intergenic |
| CACTCCTTTCAGATCAAATG+TGG | 0.582449 | 1.1:+38080805 | None:intergenic |
| ATCGTTGTTTGTTACAGCTG+CGG | 0.583633 | 1.1:+38082343 | None:intergenic |
| TGGCTTACTTGATTGACCGA+AGG | 0.592154 | 1.1:+38080674 | None:intergenic |
| CTTAAGTTTCCCCATCCCAA+AGG | 0.597848 | 1.1:+38079954 | None:intergenic |
| AAGCAAATTGCAGAGGAACA+TGG | 0.600046 | 1.1:-38080318 | MS.gene040957:CDS |
| ATCAATATATGGCTCAGAAG+AGG | 0.615079 | 1.1:-38082255 | MS.gene040957:CDS |
| GGCTCCTAAAGGAGAGAAAG+CGG | 0.617316 | 1.1:+38080389 | None:intergenic |
| AGAGCAGGAAGAACAAGATG+AGG | 0.626023 | 1.1:+38082134 | None:intergenic |
| TAGATGGTTGTATGAGCAAG+GGG | 0.628862 | 1.1:-38080125 | MS.gene040957:CDS |
| TTAGATGGTTGTATGAGCAA+GGG | 0.638177 | 1.1:-38080126 | MS.gene040957:CDS |
| CTCTCCTTTAGGAGCCAAAG+GGG | 0.646505 | 1.1:-38080382 | MS.gene040957:CDS |
| GCTTCACACTGATCGGCCAG+TGG | 0.653185 | 1.1:+38080867 | None:intergenic |
| GGCTGTGAAGAGCTACAACA+AGG | 0.663022 | 1.1:-38080095 | MS.gene040957:CDS |
| CATTTGATCTGAAAGGAGTG+TGG | 0.668530 | 1.1:-38080802 | MS.gene040957:CDS |
| AATACTCAAGCAAATTGCAG+AGG | 0.683311 | 1.1:-38080325 | MS.gene040957:CDS |
| GCAGCTGTAACAAACAACGA+TGG | 0.716105 | 1.1:-38082341 | MS.gene040957:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATTGTTATAAATCAT+AGG | - | chr1.1:38081091-38081110 | MS.gene040957:intron | 10.0% |
| !!! | AAGAAAAGTATTATATTATA+TGG | + | chr1.1:38080949-38080968 | None:intergenic | 10.0% |
| !!! | ATATATATAAATTTTTGTCT+TGG | - | chr1.1:38080321-38080340 | MS.gene040957:CDS | 10.0% |
| !!! | TAAAAATAGAATCATATTTT+TGG | + | chr1.1:38080546-38080565 | None:intergenic | 10.0% |
| !! | CTTTAAATAATGATAATTTC+CGG | + | chr1.1:38080596-38080615 | None:intergenic | 15.0% |
| !! | GAAATTATCATTATTTAAAG+TGG | - | chr1.1:38080596-38080615 | MS.gene040957:intron | 15.0% |
| !! | TGATACTATTAAGTTAATAT+TGG | + | chr1.1:38081406-38081425 | None:intergenic | 15.0% |
| !! | TTTAGAAAAAATAATACTTG+TGG | - | chr1.1:38080904-38080923 | MS.gene040957:CDS | 15.0% |
| !!! | AGAATTATTTGTATGATTTT+TGG | + | chr1.1:38080444-38080463 | None:intergenic | 15.0% |
| !!! | TAATAATTCTAAGTTGATAA+AGG | + | chr1.1:38080300-38080319 | None:intergenic | 15.0% |
| !! | AAAACTTGGAAATATTTGAT+TGG | - | chr1.1:38082317-38082336 | MS.gene040957:CDS | 20.0% |
| !! | TTAAATTAAAATTGAGCAAC+CGG | - | chr1.1:38080574-38080593 | MS.gene040957:intron | 20.0% |
| !! | TTAATAGTATCAAAACAACA+TGG | - | chr1.1:38081414-38081433 | MS.gene040957:intron | 20.0% |
| !!! | GATATATAAAAGTTTGTTAG+AGG | + | chr1.1:38081306-38081325 | None:intergenic | 20.0% |
| !!! | TTATGATGTTTTTGTTGATA+TGG | + | chr1.1:38080982-38081001 | None:intergenic | 20.0% |
| !!! | TTTTCTTTACATCATAAAGT+TGG | - | chr1.1:38080393-38080412 | MS.gene040957:CDS | 20.0% |
| ! | AAGTTTAAGAACTTGATAGA+GGG | - | chr1.1:38081149-38081168 | MS.gene040957:intron | 25.0% |
| ! | AATTACAAAGTGATACTACA+TGG | + | chr1.1:38081840-38081859 | None:intergenic | 25.0% |
| ! | ATATTAATGCCACCAAATAT+AGG | - | chr1.1:38081896-38081915 | MS.gene040957:intron | 25.0% |
| ! | ATTAATATCCGATTAGAATG+TGG | + | chr1.1:38081884-38081903 | None:intergenic | 25.0% |
| ! | GATATTCTTAACATCATCAT+TGG | - | chr1.1:38082213-38082232 | MS.gene040957:CDS | 25.0% |
| ! | GTCCAAATATTCTAATTTCA+GGG | + | chr1.1:38081479-38081498 | None:intergenic | 25.0% |
| ! | TAACTGATAGAAACTCAAAA+TGG | + | chr1.1:38082105-38082124 | None:intergenic | 25.0% |
| ! | TAAGTTTAAGAACTTGATAG+AGG | - | chr1.1:38081148-38081167 | MS.gene040957:intron | 25.0% |
| ! | TCATAGAAACGGTTATAAAA+TGG | + | chr1.1:38080634-38080653 | None:intergenic | 25.0% |
| !!! | ATATCCTAAACTTTTGAGAT+AGG | - | chr1.1:38080772-38080791 | MS.gene040957:CDS | 25.0% |
| !!! | GTATGATTTTTGGATTAGAA+TGG | + | chr1.1:38080434-38080453 | None:intergenic | 25.0% |
| !!! | TTAGAGGTTTTTTCTTTACT+CGG | + | chr1.1:38081290-38081309 | None:intergenic | 25.0% |
| AAAAGAATACTGTGAAGCAA+AGG | - | chr1.1:38081953-38081972 | MS.gene040957:intron | 30.0% | |
| AAAGAATACTGTGAAGCAAA+GGG | - | chr1.1:38081954-38081973 | MS.gene040957:intron | 30.0% | |
| ACTAAGTATCAGAGTTTCAA+AGG | + | chr1.1:38080714-38080733 | None:intergenic | 30.0% | |
| AGTTTAAGAACTTGATAGAG+GGG | - | chr1.1:38081150-38081169 | MS.gene040957:intron | 30.0% | |
| ATAACCACATTTGATCTGAA+AGG | - | chr1.1:38081568-38081587 | MS.gene040957:intron | 30.0% | |
| ATGATCACTGGAATTTGAAA+AGG | + | chr1.1:38081342-38081361 | None:intergenic | 30.0% | |
| CAATCATTGAAAATGATCAC+TGG | + | chr1.1:38081354-38081373 | None:intergenic | 30.0% | |
| GACCCTGAAATTAGAATATT+TGG | - | chr1.1:38081474-38081493 | MS.gene040957:intron | 30.0% | |
| GGTCCAAATATTCTAATTTC+AGG | + | chr1.1:38081480-38081499 | None:intergenic | 30.0% | |
| GTAATTGAAGCTATCAAATC+AGG | - | chr1.1:38080078-38080097 | MS.gene040957:CDS | 30.0% | |
| GTATCCTATCTCAAAAGTTT+AGG | + | chr1.1:38080779-38080798 | None:intergenic | 30.0% | |
| GTTATTAACTCTTCAGCATA+CGG | + | chr1.1:38081553-38081572 | None:intergenic | 30.0% | |
| TAAATCATAGGATCAAAGAG+AGG | - | chr1.1:38081103-38081122 | MS.gene040957:intron | 30.0% | |
| TATGTTTGACCTAACTTCAA+AGG | + | chr1.1:38080671-38080690 | None:intergenic | 30.0% | |
| TGATCACTGGAATTTGAAAA+GGG | + | chr1.1:38081341-38081360 | None:intergenic | 30.0% | |
| TGTTATAGGTATGTCTTAGA+TGG | - | chr1.1:38082236-38082255 | MS.gene040957:CDS | 30.0% | |
| TTAGGCCTTACAAAATCTAT+AGG | - | chr1.1:38081622-38081641 | MS.gene040957:intron | 30.0% | |
| TTGTGCATGAAATACTCAAT+TGG | + | chr1.1:38082156-38082175 | None:intergenic | 30.0% | |
| TTTGACACTGCATCAATATA+TGG | - | chr1.1:38080111-38080130 | MS.gene040957:CDS | 30.0% | |
| ! | AAGGTAAGAATTTTGCTTAC+TGG | + | chr1.1:38080281-38080300 | None:intergenic | 30.0% |
| ! | ATTTTGTAAGGCCTAATTTC+TGG | + | chr1.1:38081618-38081637 | None:intergenic | 30.0% |
| ! | TGACTCCTATAGATTTTGTA+AGG | + | chr1.1:38081630-38081649 | None:intergenic | 30.0% |
| !! | AACATCATCATTGGTGTTAT+AGG | - | chr1.1:38082222-38082241 | MS.gene040957:CDS | 30.0% |
| !! | TAGTTTGTTGATTCTCTAGT+AGG | + | chr1.1:38081245-38081264 | None:intergenic | 30.0% |
| AAACAGATTCGTGTCAACAA+TGG | - | chr1.1:38082379-38082398 | MS.gene040957:CDS | 35.0% | |
| AACAGATTCGTGTCAACAAT+GGG | - | chr1.1:38082380-38082399 | MS.gene040957:CDS | 35.0% | |
| AAGATTTCAGCACAACTTGA+GGG | + | chr1.1:38079975-38079994 | None:intergenic | 35.0% | |
| AATACTCAAGCAAATTGCAG+AGG | - | chr1.1:38082052-38082071 | MS.gene040957:intron | 35.0% | |
| ACAAGACTAGTGAAAGAGAA+AGG | + | chr1.1:38081754-38081773 | None:intergenic | 35.0% | |
| ACATGGCAAATATATTGCTC+AGG | - | chr1.1:38082076-38082095 | MS.gene040957:intron | 35.0% | |
| AGTGACATAGATGAGCTTAT+TGG | + | chr1.1:38081726-38081745 | None:intergenic | 35.0% | |
| ATAGAAGAAGCTCTTCAACT+TGG | - | chr1.1:38080159-38080178 | MS.gene040957:intron | 35.0% | |
| ATCAATATATGGCTCAGAAG+AGG | - | chr1.1:38080122-38080141 | MS.gene040957:CDS | 35.0% | |
| ATGGAAGAATGCCAGAAATT+AGG | - | chr1.1:38081604-38081623 | MS.gene040957:intron | 35.0% | |
| ATTGTCAGTAACCCAAAGTT+TGG | + | chr1.1:38080220-38080239 | None:intergenic | 35.0% | |
| CGTACGAGTATCATATGATA+CGG | - | chr1.1:38080741-38080760 | MS.gene040957:CDS | 35.0% | |
| CTTTATCACCTCCAAACTTT+GGG | - | chr1.1:38080206-38080225 | MS.gene040957:intron | 35.0% | |
| GAGTTCAAAGCTCATAGAAA+CGG | + | chr1.1:38080645-38080664 | None:intergenic | 35.0% | |
| GATTCATCTCCACCTATATT+TGG | + | chr1.1:38081911-38081930 | None:intergenic | 35.0% | |
| TAGTATCAAAACAACATGGC+CGG | - | chr1.1:38081418-38081437 | MS.gene040957:intron | 35.0% | |
| TCTTTATCACCTCCAAACTT+TGG | - | chr1.1:38080205-38080224 | MS.gene040957:intron | 35.0% | |
| TGAAACTCTGATACTTAGTG+CGG | - | chr1.1:38080715-38080734 | MS.gene040957:CDS | 35.0% | |
| TGTGTTCATTCCTAACCTTT+GGG | - | chr1.1:38082408-38082427 | MS.gene040957:CDS | 35.0% | |
| TTAATGCCACCAAATATAGG+TGG | - | chr1.1:38081899-38081918 | MS.gene040957:intron | 35.0% | |
| TTAGATGGTTGTATGAGCAA+GGG | - | chr1.1:38082251-38082270 | MS.gene040957:CDS | 35.0% | |
| TTGGGGTAGTAATGAAGTTA+TGG | - | chr1.1:38082022-38082041 | MS.gene040957:intron | 35.0% | |
| TTGTGTTCATTCCTAACCTT+TGG | - | chr1.1:38082407-38082426 | MS.gene040957:CDS | 35.0% | |
| TTTGACCTAACTTCAAAGGA+CGG | + | chr1.1:38080667-38080686 | None:intergenic | 35.0% | |
| !! | ATTTGCTATCATTCCTCCTT+CGG | - | chr1.1:38081687-38081706 | MS.gene040957:intron | 35.0% |
| !! | CTAGTCTTGTAGTTTAACGT+CGG | - | chr1.1:38081764-38081783 | MS.gene040957:intron | 35.0% |
| !! | TAAAATAGTTTTACAGCGCG+CGG | - | chr1.1:38081789-38081808 | MS.gene040957:intron | 35.0% |
| AACATGCCAGTGATAGCATT+TGG | - | chr1.1:38080009-38080028 | MS.gene040957:CDS | 40.0% | |
| AACTTCATTACTACCCCAAC+TGG | + | chr1.1:38082021-38082040 | None:intergenic | 40.0% | |
| AAGCAAATTGCAGAGGAACA+TGG | - | chr1.1:38082059-38082078 | MS.gene040957:intron | 40.0% | |
| AGGTTAGGAATGAACACAAC+TGG | + | chr1.1:38082406-38082425 | None:intergenic | 40.0% | |
| ATAACCGCTTTCTCTCCTTT+AGG | - | chr1.1:38081984-38082003 | MS.gene040957:intron | 40.0% | |
| CACTCCTTTCAGATCAAATG+TGG | + | chr1.1:38081575-38081594 | None:intergenic | 40.0% | |
| CATGAGAGAAGAGACTCAAT+CGG | + | chr1.1:38081035-38081054 | None:intergenic | 40.0% | |
| CATTTGATCTGAAAGGAGTG+TGG | - | chr1.1:38081575-38081594 | MS.gene040957:intron | 40.0% | |
| CTTAGATGGTTGTATGAGCA+AGG | - | chr1.1:38082250-38082269 | MS.gene040957:CDS | 40.0% | |
| GAAACTCTGATACTTAGTGC+GGG | - | chr1.1:38080716-38080735 | MS.gene040957:CDS | 40.0% | |
| GAAGATTTCAGCACAACTTG+AGG | + | chr1.1:38079976-38079995 | None:intergenic | 40.0% | |
| GCAACATGCCACATTCTAAT+CGG | - | chr1.1:38081873-38081892 | MS.gene040957:intron | 40.0% | |
| GCTCTTCAACTTGGTCTAAT+TGG | - | chr1.1:38080168-38080187 | MS.gene040957:intron | 40.0% | |
| GGAGAGAATGAAGCAAAACT+TGG | - | chr1.1:38082303-38082322 | MS.gene040957:CDS | 40.0% | |
| TAGATGGTTGTATGAGCAAG+GGG | - | chr1.1:38082252-38082271 | MS.gene040957:CDS | 40.0% | |
| TCATCTCCACCTATATTTGG+TGG | + | chr1.1:38081908-38081927 | None:intergenic | 40.0% | |
| ! | ATCGTTGTTTGTTACAGCTG+CGG | + | chr1.1:38080037-38080056 | None:intergenic | 40.0% |
| ! | TGGACCTTTATTTGATCCAC+TGG | - | chr1.1:38081494-38081513 | MS.gene040957:intron | 40.0% |
| ! | TTCATTCCTAACCTTTGGGA+TGG | - | chr1.1:38082412-38082431 | MS.gene040957:CDS | 40.0% |
| !! | CTCGGTTAGAGTTTGTTAGT+AGG | + | chr1.1:38081272-38081291 | None:intergenic | 40.0% |
| !! | TCATTCCTAACCTTTGGGAT+GGG | - | chr1.1:38082413-38082432 | MS.gene040957:CDS | 40.0% |
| AGAGCAGGAAGAACAAGATG+AGG | + | chr1.1:38080246-38080265 | None:intergenic | 45.0% | |
| AGCTTCTTCTGATGCCAAAC+TGG | + | chr1.1:38081933-38081952 | None:intergenic | 45.0% | |
| AGGTGGAGATGAATCCAGTT+TGG | - | chr1.1:38081916-38081935 | MS.gene040957:intron | 45.0% | |
| CAATTTCAGACCTTGTGCTC+CGG | + | chr1.1:38081440-38081459 | None:intergenic | 45.0% | |
| CAGTGTGAAGCCTGGAAATT+GGG | - | chr1.1:38081522-38081541 | MS.gene040957:intron | 45.0% | |
| CGATTGAGTCTCTTCTCTCA+TGG | - | chr1.1:38081033-38081052 | MS.gene040957:intron | 45.0% | |
| CTATCACTGGCATGTTGCAT+TGG | + | chr1.1:38080005-38080024 | None:intergenic | 45.0% | |
| CTTACTTGATTGACCGAAGG+AGG | + | chr1.1:38081703-38081722 | None:intergenic | 45.0% | |
| GCAGCTGTAACAAACAACGA+TGG | - | chr1.1:38080036-38080055 | MS.gene040957:CDS | 45.0% | |
| GTCAGTAACCCAAAGTTTGG+AGG | + | chr1.1:38080217-38080236 | None:intergenic | 45.0% | |
| TACGGCAATTCCCAATTTCC+AGG | + | chr1.1:38081535-38081554 | None:intergenic | 45.0% | |
| TATGGCTCAGAAGAGGCTTT+AGG | - | chr1.1:38080129-38080148 | MS.gene040957:CDS | 45.0% | |
| TCAGTGTGAAGCCTGGAAAT+TGG | - | chr1.1:38081521-38081540 | MS.gene040957:intron | 45.0% | |
| TCGGCCAGTGGATCAAATAA+AGG | + | chr1.1:38081501-38081520 | None:intergenic | 45.0% | |
| TGAAATTGATGCCATGCTGC+AGG | - | chr1.1:38081452-38081471 | MS.gene040957:intron | 45.0% | |
| TGGCTTACTTGATTGACCGA+AGG | + | chr1.1:38081706-38081725 | None:intergenic | 45.0% | |
| TTTCCAGGCTTCACACTGAT+CGG | + | chr1.1:38081520-38081539 | None:intergenic | 45.0% | |
| ! | GAAAGGAGTGTGGACATCAA+TGG | - | chr1.1:38081585-38081604 | MS.gene040957:intron | 45.0% |
| ! | TCTCTCCTTTAGGAGCCAAA+GGG | - | chr1.1:38081994-38082013 | MS.gene040957:intron | 45.0% |
| ! | TGGAGTGATTTCTGAAGAGC+AGG | + | chr1.1:38080261-38080280 | None:intergenic | 45.0% |
| ! | TTCTCTCCTTTAGGAGCCAA+AGG | - | chr1.1:38081993-38082012 | MS.gene040957:intron | 45.0% |
| !! | CATTCCTAACCTTTGGGATG+GGG | - | chr1.1:38082414-38082433 | MS.gene040957:CDS | 45.0% |
| !! | GAACTCCGTCCTTTGAAGTT+AGG | - | chr1.1:38080659-38080678 | MS.gene040957:intron | 45.0% |
| AATTTCAGGGTCCTGCAGCA+TGG | + | chr1.1:38081466-38081485 | None:intergenic | 50.0% | |
| CGGCAGCAATTGAGTAGTCA+CGG | - | chr1.1:38081809-38081828 | MS.gene040957:intron | 50.0% | |
| GCGGTACCAAATGCTATCAC+TGG | + | chr1.1:38080018-38080037 | None:intergenic | 50.0% | |
| GGCTCCTAAAGGAGAGAAAG+CGG | + | chr1.1:38081991-38082010 | None:intergenic | 50.0% | |
| GGCTGTGAAGAGCTACAACA+AGG | - | chr1.1:38082282-38082301 | MS.gene040957:CDS | 50.0% | |
| GTATGAGCAAGGGGTGACTA+TGG | - | chr1.1:38082261-38082280 | MS.gene040957:CDS | 50.0% | |
| GTTTCCCCATCCCAAAGGTT+AGG | + | chr1.1:38082421-38082440 | None:intergenic | 50.0% | |
| ! | CACTGGCATGTTGCATTGGT+TGG | + | chr1.1:38080001-38080020 | None:intergenic | 50.0% |
| ! | CTCTCCTTTAGGAGCCAAAG+GGG | - | chr1.1:38081995-38082014 | MS.gene040957:intron | 50.0% |
| AACAACATGGCCGGAGCACA+AGG | - | chr1.1:38081427-38081446 | MS.gene040957:intron | 55.0% | |
| ACTACCCCAACTGGCCCCTT+TGG | + | chr1.1:38082012-38082031 | None:intergenic | 60.0% | |
| AGGAGCCAAAGGGGCCAGTT+GGG | - | chr1.1:38082004-38082023 | MS.gene040957:intron | 60.0% | |
| GCTTCACACTGATCGGCCAG+TGG | + | chr1.1:38081513-38081532 | None:intergenic | 60.0% | |
| TAGGAGCCAAAGGGGCCAGT+TGG | - | chr1.1:38082003-38082022 | MS.gene040957:intron | 60.0% | |
| TGGCCGATCAGTGTGAAGCC+TGG | - | chr1.1:38081514-38081533 | MS.gene040957:intron | 60.0% | |
| ! | CTGGCCCCTTTGGCTCCTAA+AGG | + | chr1.1:38082002-38082021 | None:intergenic | 60.0% |
| GGAGCCAAAGGGGCCAGTTG+GGG | - | chr1.1:38082005-38082024 | MS.gene040957:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 38079955 | 38082444 | 38079955 | ID=MS.gene040957 |
| chr1.1 | mRNA | 38079955 | 38082444 | 38079955 | ID=MS.gene040957.t1;Parent=MS.gene040957 |
| chr1.1 | exon | 38082119 | 38082444 | 38082119 | ID=MS.gene040957.t1.exon1;Parent=MS.gene040957.t1 |
| chr1.1 | CDS | 38082119 | 38082444 | 38082119 | ID=cds.MS.gene040957.t1;Parent=MS.gene040957.t1 |
| chr1.1 | exon | 38080682 | 38080925 | 38080682 | ID=MS.gene040957.t1.exon2;Parent=MS.gene040957.t1 |
| chr1.1 | CDS | 38080682 | 38080925 | 38080682 | ID=cds.MS.gene040957.t1;Parent=MS.gene040957.t1 |
| chr1.1 | exon | 38080302 | 38080481 | 38080302 | ID=MS.gene040957.t1.exon3;Parent=MS.gene040957.t1 |
| chr1.1 | CDS | 38080302 | 38080481 | 38080302 | ID=cds.MS.gene040957.t1;Parent=MS.gene040957.t1 |
| chr1.1 | exon | 38079955 | 38080155 | 38079955 | ID=MS.gene040957.t1.exon4;Parent=MS.gene040957.t1 |
| chr1.1 | CDS | 38079955 | 38080155 | 38079955 | ID=cds.MS.gene040957.t1;Parent=MS.gene040957.t1 |
| Gene Sequence |
| Protein sequence |
