Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044379.t1 | XP_003601570.1 | 99 | 315 | 3 | 0 | 1 | 315 | 1 | 315 | 2.70E-173 | 617.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044379.t1 | P26690 | 68.9 | 315 | 97 | 1 | 1 | 315 | 1 | 314 | 3.5e-129 | 462.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044379.t1 | G7J9I2 | 99.0 | 315 | 3 | 0 | 1 | 315 | 1 | 315 | 1.9e-173 | 617.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene97981 | MS.gene044379 | PPI |
| MS.gene044379 | MS.gene53169 | PPI |
| MS.gene54933 | MS.gene044379 | PPI |
| MS.gene044379 | MS.gene008793 | PPI |
| MS.gene044379 | MS.gene024362 | PPI |
| MS.gene044379 | MS.gene91446 | PPI |
| MS.gene044379 | MS.gene008794 | PPI |
| MS.gene044379 | MS.gene95889 | PPI |
| MS.gene044379 | MS.gene98697 | PPI |
| MS.gene044379 | MS.gene93783 | PPI |
| MS.gene044379 | MS.gene93058 | PPI |
| MS.gene044379 | MS.gene55382 | PPI |
| MS.gene50700 | MS.gene044379 | PPI |
| MS.gene044379 | MS.gene99693 | PPI |
| MS.gene23359 | MS.gene044379 | PPI |
| MS.gene003638 | MS.gene044379 | PPI |
| MS.gene62620 | MS.gene044379 | PPI |
| MS.gene056488 | MS.gene044379 | PPI |
| MS.gene044379 | MS.gene056487 | PPI |
| MS.gene044379 | MS.gene062932 | PPI |
| MS.gene044379 | MS.gene42146 | PPI |
| MS.gene93059 | MS.gene044379 | PPI |
| MS.gene044379 | MS.gene42873 | PPI |
| MS.gene044379 | MS.gene87111 | PPI |
| MS.gene72560 | MS.gene044379 | PPI |
| MS.gene044379 | MS.gene97980 | PPI |
| MS.gene040151 | MS.gene044379 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044379.t1 | MTR_3g083130 | 99.048 | 315 | 3 | 0 | 1 | 315 | 1 | 315 | 0.0 | 637 |
| MS.gene044379.t1 | MTR_5g097900 | 68.506 | 308 | 96 | 1 | 7 | 314 | 6 | 312 | 4.86e-154 | 434 |
| MS.gene044379.t1 | MTR_5g097910 | 68.182 | 308 | 97 | 1 | 7 | 314 | 6 | 312 | 1.12e-153 | 433 |
| MS.gene044379.t1 | MTR_5g097940 | 68.182 | 308 | 97 | 1 | 7 | 314 | 6 | 312 | 1.12e-153 | 433 |
| MS.gene044379.t1 | MTR_0374s0050 | 62.857 | 315 | 114 | 3 | 3 | 315 | 2 | 315 | 5.74e-143 | 406 |
| MS.gene044379.t1 | MTR_4g072320 | 50.633 | 316 | 138 | 5 | 7 | 313 | 6 | 312 | 2.05e-106 | 313 |
| MS.gene044379.t1 | MTR_6g073110 | 51.325 | 302 | 136 | 4 | 6 | 302 | 5 | 300 | 1.09e-103 | 306 |
| MS.gene044379.t1 | MTR_4g072350 | 49.686 | 318 | 144 | 6 | 7 | 313 | 6 | 318 | 1.86e-103 | 306 |
| MS.gene044379.t1 | MTR_4g072360 | 48.910 | 321 | 148 | 6 | 4 | 313 | 3 | 318 | 1.46e-102 | 303 |
| MS.gene044379.t1 | MTR_4g036845 | 40.328 | 305 | 168 | 7 | 21 | 315 | 14 | 314 | 6.42e-75 | 233 |
| MS.gene044379.t1 | MTR_8g070095 | 40.702 | 285 | 165 | 3 | 20 | 302 | 15 | 297 | 7.36e-71 | 223 |
| MS.gene044379.t1 | MTR_4g021350 | 45.230 | 283 | 149 | 5 | 20 | 302 | 15 | 291 | 1.91e-69 | 219 |
| MS.gene044379.t1 | MTR_8g070115 | 40.656 | 305 | 167 | 5 | 20 | 315 | 15 | 314 | 8.52e-68 | 214 |
| MS.gene044379.t1 | MTR_7g063580 | 41.311 | 305 | 164 | 5 | 20 | 315 | 55 | 353 | 6.65e-67 | 213 |
| MS.gene044379.t1 | MTR_4g021350 | 44.765 | 277 | 147 | 5 | 20 | 296 | 15 | 285 | 1.28e-66 | 211 |
| MS.gene044379.t1 | MTR_4g021410 | 41.118 | 304 | 156 | 5 | 20 | 315 | 16 | 304 | 1.48e-64 | 206 |
| MS.gene044379.t1 | MTR_7g070500 | 37.134 | 307 | 172 | 7 | 21 | 315 | 23 | 320 | 1.31e-62 | 201 |
| MS.gene044379.t1 | MTR_4g021450 | 40.461 | 304 | 158 | 5 | 20 | 315 | 16 | 304 | 1.26e-61 | 198 |
| MS.gene044379.t1 | MTR_4g021410 | 41.455 | 275 | 140 | 4 | 49 | 315 | 6 | 267 | 1.76e-60 | 194 |
| MS.gene044379.t1 | MTR_7g070500 | 38.545 | 275 | 160 | 5 | 21 | 294 | 23 | 289 | 3.89e-60 | 194 |
| MS.gene044379.t1 | MTR_4g072060 | 37.171 | 304 | 175 | 6 | 20 | 312 | 10 | 308 | 1.64e-52 | 175 |
| MS.gene044379.t1 | MTR_4g021410 | 41.250 | 240 | 121 | 3 | 84 | 315 | 1 | 228 | 2.83e-49 | 164 |
| MS.gene044379.t1 | MTR_4g021450 | 40.833 | 240 | 122 | 3 | 84 | 315 | 1 | 228 | 2.74e-47 | 159 |
| MS.gene044379.t1 | MTR_4g021450 | 39.130 | 184 | 101 | 2 | 140 | 315 | 5 | 185 | 1.61e-39 | 137 |
| MS.gene044379.t1 | MTR_6g072650 | 45.333 | 150 | 46 | 5 | 175 | 313 | 10 | 134 | 7.96e-29 | 108 |
| MS.gene044379.t1 | MTR_6g072710 | 47.788 | 113 | 54 | 2 | 193 | 302 | 1 | 111 | 1.17e-26 | 101 |
| MS.gene044379.t1 | MTR_3g449790 | 25.000 | 308 | 162 | 10 | 39 | 308 | 77 | 353 | 2.15e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044379.t1 | AT1G59960 | 51.692 | 325 | 138 | 7 | 6 | 315 | 5 | 325 | 5.18e-114 | 333 |
| MS.gene044379.t1 | AT1G59950 | 52.681 | 317 | 138 | 5 | 10 | 315 | 4 | 319 | 7.11e-109 | 320 |
| MS.gene044379.t1 | AT5G01670 | 40.645 | 310 | 159 | 9 | 20 | 315 | 23 | 321 | 3.74e-73 | 228 |
| MS.gene044379.t1 | AT2G37790 | 42.105 | 304 | 163 | 6 | 20 | 315 | 15 | 313 | 4.85e-72 | 225 |
| MS.gene044379.t1 | AT2G37770 | 41.503 | 306 | 163 | 6 | 20 | 315 | 15 | 314 | 1.62e-71 | 224 |
| MS.gene044379.t1 | AT5G62420 | 39.869 | 306 | 169 | 7 | 21 | 315 | 14 | 315 | 7.94e-71 | 222 |
| MS.gene044379.t1 | AT5G01670 | 37.389 | 337 | 159 | 10 | 20 | 315 | 23 | 348 | 3.24e-67 | 214 |
| MS.gene044379.t1 | AT2G37760 | 39.016 | 305 | 168 | 5 | 20 | 315 | 15 | 310 | 2.21e-66 | 211 |
| MS.gene044379.t1 | AT2G37760 | 39.016 | 305 | 168 | 5 | 20 | 315 | 15 | 310 | 2.21e-66 | 211 |
| MS.gene044379.t1 | AT2G37760 | 41.071 | 280 | 155 | 4 | 20 | 298 | 15 | 285 | 4.05e-66 | 209 |
| MS.gene044379.t1 | AT2G37760 | 40.426 | 282 | 158 | 4 | 20 | 300 | 15 | 287 | 6.97e-66 | 209 |
| MS.gene044379.t1 | AT2G37760 | 40.426 | 282 | 158 | 4 | 20 | 300 | 15 | 287 | 6.97e-66 | 209 |
| MS.gene044379.t1 | AT3G53880 | 37.908 | 306 | 174 | 6 | 20 | 315 | 15 | 314 | 2.21e-62 | 201 |
| MS.gene044379.t1 | AT3G53880 | 38.129 | 278 | 166 | 4 | 20 | 296 | 15 | 287 | 2.36e-58 | 190 |
| MS.gene044379.t1 | AT2G21250 | 34.539 | 304 | 183 | 6 | 20 | 312 | 10 | 308 | 1.31e-57 | 188 |
| MS.gene044379.t1 | AT2G21260 | 35.417 | 288 | 170 | 6 | 20 | 296 | 10 | 292 | 7.85e-57 | 186 |
| MS.gene044379.t1 | AT2G37760 | 38.168 | 262 | 150 | 4 | 63 | 315 | 6 | 264 | 4.37e-54 | 177 |
| MS.gene044379.t1 | AT2G37760 | 38.168 | 262 | 150 | 4 | 63 | 315 | 6 | 264 | 4.37e-54 | 177 |
| MS.gene044379.t1 | AT2G37770 | 45.833 | 192 | 99 | 3 | 20 | 211 | 15 | 201 | 3.24e-48 | 163 |
| MS.gene044379.t1 | AT2G21250 | 36.681 | 229 | 129 | 6 | 20 | 237 | 10 | 233 | 4.54e-43 | 148 |
| MS.gene044379.t1 | AT2G21260 | 31.797 | 217 | 135 | 4 | 89 | 294 | 8 | 222 | 4.94e-35 | 127 |
| MS.gene044379.t1 | AT1G06690 | 25.763 | 295 | 166 | 7 | 39 | 297 | 88 | 365 | 2.13e-17 | 82.4 |
| MS.gene044379.t1 | AT5G53580 | 25.267 | 281 | 154 | 12 | 45 | 287 | 80 | 342 | 5.96e-12 | 66.2 |
Find 82 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTGTTACTTCTAAATTA+TGG | 0.129563 | 3.3:-69939780 | MS.gene044379:CDS |
| AGCCTCTTCTTGATGATCTA+TGG | 0.232119 | 3.3:-69938761 | MS.gene044379:CDS |
| CTTTGATGAGTCTCTCTTGA+TGG | 0.239320 | 3.3:+69938793 | None:intergenic |
| AATCAAAGATTTGCAAGTTT+TGG | 0.245163 | 3.3:+69938856 | None:intergenic |
| TCACCTGGTTTAGTAGTAAT+TGG | 0.253992 | 3.3:+69939564 | None:intergenic |
| CTTTGTTACTTCTAAATTAT+GGG | 0.275213 | 3.3:-69939779 | MS.gene044379:CDS |
| ATGTCTATAACCTTGTTTGA+TGG | 0.330198 | 3.3:+69939897 | None:intergenic |
| ACAATCTCTGATACTTCAAT+AGG | 0.347637 | 3.3:+69939531 | None:intergenic |
| AAAACTTGCAAATCTTTGAT+TGG | 0.362637 | 3.3:-69938854 | MS.gene044379:CDS |
| AACCTTGTTTGATGGCTTCA+AGG | 0.381003 | 3.3:+69939905 | None:intergenic |
| CCCTGCTAGCACCTTTCCTA+AGG | 0.387480 | 3.3:+69939159 | None:intergenic |
| CAATGATATACTCAAAGAAT+TGG | 0.390203 | 3.3:-69939117 | MS.gene044379:CDS |
| GTAACCTTACTGGTTGCTTC+CGG | 0.403522 | 3.3:+69939943 | None:intergenic |
| TTTCCGTTGTCCGGTGGAGG+AGG | 0.424568 | 3.3:+69939993 | None:intergenic |
| TTGGCCAATGGATCAAAATA+AGG | 0.425035 | 3.3:+69939583 | None:intergenic |
| CTTAGAGATTTCTGCAGAGC+AGG | 0.429110 | 3.3:+69939727 | None:intergenic |
| CTGCTCTGCAGAAATCTCTA+AGG | 0.431594 | 3.3:-69939726 | MS.gene044379:intron |
| GTTGCTAGCTCCAATGGCTT+TGG | 0.432705 | 3.3:+69939449 | None:intergenic |
| CCCTTAGGAAAGGTGCTAGC+AGG | 0.441076 | 3.3:-69939160 | MS.gene044379:CDS |
| GAGGAGGGGAGGACTACTTC+AGG | 0.445285 | 3.3:+69940009 | None:intergenic |
| CAATCTCTGATACTTCAATA+GGG | 0.455333 | 3.3:+69939532 | None:intergenic |
| GTTTCTCTTGTTGCCATCCA+AGG | 0.461119 | 3.3:+69939231 | None:intergenic |
| TTCCGTTGTCCGGTGGAGGA+GGG | 0.463761 | 3.3:+69939994 | None:intergenic |
| GACTCTTCAACTAGAATACT+TGG | 0.468397 | 3.3:-69939607 | MS.gene044379:CDS |
| AAAATGCCGGTGATGGGCCT+CGG | 0.468907 | 3.3:-69939973 | MS.gene044379:CDS |
| TTTGATGCAGCTGCTGCATA+TGG | 0.474976 | 3.3:-69939874 | MS.gene044379:CDS |
| TCCGTTGTCCGGTGGAGGAG+GGG | 0.476698 | 3.3:+69939995 | None:intergenic |
| GCCTCTTCTTGATGATCTAT+GGG | 0.483427 | 3.3:-69938760 | MS.gene044379:CDS |
| CCTGCTAGCACCTTTCCTAA+GGG | 0.491638 | 3.3:+69939160 | None:intergenic |
| TGAGAAGTTGCTAGCTCCAA+TGG | 0.493072 | 3.3:+69939443 | None:intergenic |
| ACAACGGAAAATGCCGGTGA+TGG | 0.497720 | 3.3:-69939980 | MS.gene044379:CDS |
| CTTGGTCTCACCAAAGCCAT+TGG | 0.503945 | 3.3:-69939459 | MS.gene044379:CDS |
| TCAATTACTTGATTCACTGC+AGG | 0.507920 | 3.3:+69939378 | None:intergenic |
| TTTGGCAGATTTGTCTTCGA+TGG | 0.511955 | 3.3:-69938935 | MS.gene044379:intron |
| GAAAGGTGTGTGGACATCAT+TGG | 0.513831 | 3.3:-69939496 | MS.gene044379:CDS |
| ATTGCAGAAGCACTTAAACT+TGG | 0.516828 | 3.3:-69939826 | MS.gene044379:CDS |
| CAACGGAAAATGCCGGTGAT+GGG | 0.522929 | 3.3:-69939979 | MS.gene044379:CDS |
| TAACTGCCTTCTCACCCCTT+AGG | 0.527768 | 3.3:-69939175 | MS.gene044379:CDS |
| CCTTAGGAAAGGTGCTAGCA+GGG | 0.529822 | 3.3:-69939159 | MS.gene044379:CDS |
| ATAGGGTATTTAACTTCACC+TGG | 0.535676 | 3.3:+69939549 | None:intergenic |
| TTGCTTCCGGTGCGGTGCCG+AGG | 0.538965 | 3.3:+69939956 | None:intergenic |
| GTAGTCCTCCCCTCCTCCAC+CGG | 0.540364 | 3.3:-69940003 | MS.gene044379:CDS |
| TTGATTCACTGCAGGAGGGA+TGG | 0.540989 | 3.3:+69939386 | None:intergenic |
| ACCTTTCCTAAGGGGTGAGA+AGG | 0.541355 | 3.3:+69939169 | None:intergenic |
| GTTGTCCGGTGGAGGAGGGG+AGG | 0.547684 | 3.3:+69939998 | None:intergenic |
| AGGTGGAAGTCAACCTTGGA+TGG | 0.547815 | 3.3:-69939244 | MS.gene044379:CDS |
| GATGGGCCTCGGCACCGCAC+CGG | 0.552144 | 3.3:-69939962 | MS.gene044379:CDS |
| TATTGAAGTATCAGAGATTG+TGG | 0.554195 | 3.3:-69939529 | MS.gene044379:CDS |
| AGGACTACTTCAGGGACTGT+AGG | 0.556376 | 3.3:+69940018 | None:intergenic |
| TAGATCATCAAGAAGAGGCT+TGG | 0.556426 | 3.3:+69938764 | None:intergenic |
| TCATCAAGAAGAGGCTTGGT+TGG | 0.556818 | 3.3:+69938768 | None:intergenic |
| AGAGCAGGAACAATGAGCTC+AGG | 0.564156 | 3.3:+69939742 | None:intergenic |
| ATTACTTGATTCACTGCAGG+AGG | 0.566545 | 3.3:+69939381 | None:intergenic |
| TCCCCTCCTCCACCGGACAA+CGG | 0.566967 | 3.3:-69939996 | MS.gene044379:CDS |
| GCGGTGCCGAGGCCCATCAC+CGG | 0.568831 | 3.3:+69939967 | None:intergenic |
| TAATAGGTGGAAGTCAACCT+TGG | 0.576953 | 3.3:-69939248 | MS.gene044379:intron |
| GTTTAGTAGTAATTGGCCAA+TGG | 0.578679 | 3.3:+69939571 | None:intergenic |
| TGCAGGAGGGATGGTTGCAA+AGG | 0.578968 | 3.3:+69939395 | None:intergenic |
| TCCCATAGATCATCAAGAAG+AGG | 0.583002 | 3.3:+69938759 | None:intergenic |
| CGCACCGGAAGCAACCAGTA+AGG | 0.584380 | 3.3:-69939947 | MS.gene044379:CDS |
| ACATGGCAAGACTATAGCTC+AGG | 0.585566 | 3.3:-69939087 | MS.gene044379:intron |
| CTTCGATGGCTATATGAGCA+AGG | 0.590577 | 3.3:-69938921 | MS.gene044379:CDS |
| GTCCTTGAAGCCATCAAACA+AGG | 0.591634 | 3.3:-69939907 | MS.gene044379:CDS |
| CACCGGACAACGGAAAATGC+CGG | 0.597803 | 3.3:-69939986 | MS.gene044379:CDS |
| CAGGGGTGCTAATTTAGTGA+TGG | 0.600153 | 3.3:-69939141 | MS.gene044379:CDS |
| AGGAGGGGAGGACTACTTCA+GGG | 0.602610 | 3.3:+69940010 | None:intergenic |
| TTAAGAGCTATGACAAGGAG+AGG | 0.604664 | 3.3:-69938884 | MS.gene044379:CDS |
| GCCTTCTCACCCCTTAGGAA+AGG | 0.609336 | 3.3:-69939170 | MS.gene044379:CDS |
| AAAGAATTGGCTGATGCACA+TGG | 0.613616 | 3.3:-69939104 | MS.gene044379:CDS |
| CTTTGATTGGTCATTGACTG+AGG | 0.619859 | 3.3:-69938841 | MS.gene044379:CDS |
| CTTACTGGTTGCTTCCGGTG+CGG | 0.628936 | 3.3:+69939948 | None:intergenic |
| CTGCTAGCACCTTTCCTAAG+GGG | 0.635830 | 3.3:+69939161 | None:intergenic |
| TGTGGTTAAGAGCTATGACA+AGG | 0.641038 | 3.3:-69938889 | MS.gene044379:CDS |
| CATCAAGAGAGACTCATCAA+AGG | 0.641861 | 3.3:-69938792 | MS.gene044379:CDS |
| TGGCCAATTACTACTAAACC+AGG | 0.647399 | 3.3:-69939567 | MS.gene044379:CDS |
| ATTGTGGAATTTGATATGAA+AGG | 0.649138 | 3.3:-69939513 | MS.gene044379:CDS |
| GAAACTTAGAGCCTTCTGCA+AGG | 0.650710 | 3.3:-69939213 | MS.gene044379:CDS |
| CTTAGGAAAGGTGCTAGCAG+GGG | 0.654145 | 3.3:-69939158 | MS.gene044379:CDS |
| CTGCAAGGAAAAGTGTATTG+TGG | 0.655539 | 3.3:-69939198 | MS.gene044379:CDS |
| TTACTTGATTCACTGCAGGA+GGG | 0.664815 | 3.3:+69939382 | None:intergenic |
| AATTTGATATGAAAGGTGTG+TGG | 0.691006 | 3.3:-69939506 | MS.gene044379:CDS |
| TGCAGCTGCTGCATATGGTG+TGG | 0.691514 | 3.3:-69939869 | MS.gene044379:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAATGTCACAATACTT+TGG | - | chr3.3:69939826-69939845 | MS.gene044379:CDS | 20.0% |
| !! | ACATATGAAATCATGTAAAA+TGG | + | chr3.3:69939461-69939480 | None:intergenic | 20.0% |
| !! | TATATAATATGATCTTAGCA+TGG | - | chr3.3:69939724-69939743 | MS.gene044379:intron | 20.0% |
| !!! | AAATTAATTTGGATCCTAAT+AGG | - | chr3.3:69939515-69939534 | MS.gene044379:CDS | 20.0% |
| !!! | CTTTGTTACTTCTAAATTAT+GGG | - | chr3.3:69939000-69939019 | MS.gene044379:intron | 20.0% |
| !!! | TCTTTGTTACTTCTAAATTA+TGG | - | chr3.3:69938999-69939018 | MS.gene044379:intron | 20.0% |
| ! | AAAACTTGCAAATCTTTGAT+TGG | - | chr3.3:69939925-69939944 | MS.gene044379:CDS | 25.0% |
| ! | ATTGTGGAATTTGATATGAA+AGG | - | chr3.3:69939266-69939285 | MS.gene044379:intron | 25.0% |
| ! | CAATGATATACTCAAAGAAT+TGG | - | chr3.3:69939662-69939681 | MS.gene044379:intron | 25.0% |
| !! | AATCAAAGATTTGCAAGTTT+TGG | + | chr3.3:69939926-69939945 | None:intergenic | 25.0% |
| AATCACTCCAAATTAGAAGT+TGG | + | chr3.3:69939751-69939770 | None:intergenic | 30.0% | |
| ACAATCTCTGATACTTCAAT+AGG | + | chr3.3:69939251-69939270 | None:intergenic | 30.0% | |
| CAATCTCTGATACTTCAATA+GGG | + | chr3.3:69939250-69939269 | None:intergenic | 30.0% | |
| TTGGAAGAATGTCAAAAACT+TGG | - | chr3.3:69939302-69939321 | MS.gene044379:intron | 30.0% | |
| ! | AATTTGATATGAAAGGTGTG+TGG | - | chr3.3:69939273-69939292 | MS.gene044379:intron | 30.0% |
| ! | ATCTTTTGTAGTAACCTTAC+TGG | + | chr3.3:69938849-69938868 | None:intergenic | 30.0% |
| ! | ATGTCTATAACCTTGTTTGA+TGG | + | chr3.3:69938885-69938904 | None:intergenic | 30.0% |
| ! | TATTGAAGTATCAGAGATTG+TGG | - | chr3.3:69939250-69939269 | MS.gene044379:intron | 30.0% |
| ! | TTAATTTGGATCCTAATAGG+TGG | - | chr3.3:69939518-69939537 | MS.gene044379:CDS | 30.0% |
| GACTCTTCAACTAGAATACT+TGG | - | chr3.3:69939172-69939191 | MS.gene044379:CDS | 35.0% | |
| GTTTAGTAGTAATTGGCCAA+TGG | + | chr3.3:69939211-69939230 | None:intergenic | 35.0% | |
| TATGGTGTGGAAAAATCTGT+TGG | - | chr3.3:69938923-69938942 | MS.gene044379:CDS | 35.0% | |
| TCAATTACTTGATTCACTGC+AGG | + | chr3.3:69939404-69939423 | None:intergenic | 35.0% | |
| TCACCTGGTTTAGTAGTAAT+TGG | + | chr3.3:69939218-69939237 | None:intergenic | 35.0% | |
| TTGGCCAATGGATCAAAATA+AGG | + | chr3.3:69939199-69939218 | None:intergenic | 35.0% | |
| ! | AATACACTTTTCCTTGCAGA+AGG | + | chr3.3:69939580-69939599 | None:intergenic | 35.0% |
| ! | ATAGGGTATTTAACTTCACC+TGG | + | chr3.3:69939233-69939252 | None:intergenic | 35.0% |
| !! | ATTGCAGAAGCACTTAAACT+TGG | - | chr3.3:69938953-69938972 | MS.gene044379:intron | 35.0% |
| !!! | GTATACATGCTTGTTTTTGC+AGG | - | chr3.3:69939150-69939169 | MS.gene044379:CDS | 35.0% |
| !!! | TGGACCTTATTTTGATCCAT+TGG | - | chr3.3:69939192-69939211 | MS.gene044379:CDS | 35.0% |
| AAAGAATTGGCTGATGCACA+TGG | - | chr3.3:69939675-69939694 | MS.gene044379:intron | 40.0% | |
| ATTACTTGATTCACTGCAGG+AGG | + | chr3.3:69939401-69939420 | None:intergenic | 40.0% | |
| CATCAAGAGAGACTCATCAA+AGG | - | chr3.3:69939987-69940006 | MS.gene044379:CDS | 40.0% | |
| CTTTGATGAGTCTCTCTTGA+TGG | + | chr3.3:69939989-69940008 | None:intergenic | 40.0% | |
| GCATGGACCAACTTCTAATT+TGG | - | chr3.3:69939741-69939760 | MS.gene044379:CDS | 40.0% | |
| TAATAGGTGGAAGTCAACCT+TGG | - | chr3.3:69939531-69939550 | MS.gene044379:CDS | 40.0% | |
| TAGATCATCAAGAAGAGGCT+TGG | + | chr3.3:69940018-69940037 | None:intergenic | 40.0% | |
| TCCCATAGATCATCAAGAAG+AGG | + | chr3.3:69940023-69940042 | None:intergenic | 40.0% | |
| TGGCCAATTACTACTAAACC+AGG | - | chr3.3:69939212-69939231 | MS.gene044379:CDS | 40.0% | |
| TGTGGTTAAGAGCTATGACA+AGG | - | chr3.3:69939890-69939909 | MS.gene044379:CDS | 40.0% | |
| TTAAGAGCTATGACAAGGAG+AGG | - | chr3.3:69939895-69939914 | MS.gene044379:CDS | 40.0% | |
| TTACTTGATTCACTGCAGGA+GGG | + | chr3.3:69939400-69939419 | None:intergenic | 40.0% | |
| TTTGGCAGATTTGTCTTCGA+TGG | - | chr3.3:69939844-69939863 | MS.gene044379:CDS | 40.0% | |
| ! | AACCTTGTTTGATGGCTTCA+AGG | + | chr3.3:69938877-69938896 | None:intergenic | 40.0% |
| ! | AAGGTTGACTTCCACCTATT+AGG | + | chr3.3:69939532-69939551 | None:intergenic | 40.0% |
| ! | AGCCTCTTCTTGATGATCTA+TGG | - | chr3.3:69940018-69940037 | MS.gene044379:CDS | 40.0% |
| ! | CTGCAAGGAAAAGTGTATTG+TGG | - | chr3.3:69939581-69939600 | MS.gene044379:CDS | 40.0% |
| ! | CTTTGATTGGTCATTGACTG+AGG | - | chr3.3:69939938-69939957 | MS.gene044379:CDS | 40.0% |
| ! | GCCTCTTCTTGATGATCTAT+GGG | - | chr3.3:69940019-69940038 | MS.gene044379:CDS | 40.0% |
| !! | TGAGCAAGGATTGACTTTTG+TGG | - | chr3.3:69939872-69939891 | MS.gene044379:CDS | 40.0% |
| ACATGGCAAGACTATAGCTC+AGG | - | chr3.3:69939692-69939711 | MS.gene044379:intron | 45.0% | |
| CTGCTCTGCAGAAATCTCTA+AGG | - | chr3.3:69939053-69939072 | MS.gene044379:intron | 45.0% | |
| CTTAGAGATTTCTGCAGAGC+AGG | + | chr3.3:69939055-69939074 | None:intergenic | 45.0% | |
| CTTCGATGGCTATATGAGCA+AGG | - | chr3.3:69939858-69939877 | MS.gene044379:CDS | 45.0% | |
| GAAACTTAGAGCCTTCTGCA+AGG | - | chr3.3:69939566-69939585 | MS.gene044379:CDS | 45.0% | |
| GTCCTTGAAGCCATCAAACA+AGG | - | chr3.3:69938872-69938891 | MS.gene044379:CDS | 45.0% | |
| GTTTCTCTTGTTGCCATCCA+AGG | + | chr3.3:69939551-69939570 | None:intergenic | 45.0% | |
| TGAGAAGTTGCTAGCTCCAA+TGG | + | chr3.3:69939339-69939358 | None:intergenic | 45.0% | |
| TTTGATGCAGCTGCTGCATA+TGG | - | chr3.3:69938905-69938924 | MS.gene044379:CDS | 45.0% | |
| ! | GAAAGGTGTGTGGACATCAT+TGG | - | chr3.3:69939283-69939302 | MS.gene044379:intron | 45.0% |
| ! | GTAACCTTACTGGTTGCTTC+CGG | + | chr3.3:69938839-69938858 | None:intergenic | 45.0% |
| ! | TCATCAAGAAGAGGCTTGGT+TGG | + | chr3.3:69940014-69940033 | None:intergenic | 45.0% |
| !! | CAGGGGTGCTAATTTAGTGA+TGG | - | chr3.3:69939638-69939657 | MS.gene044379:intron | 45.0% |
| !!! | AATTATTGATTAAATTAATT+TGG | - | chr3.3:69939504-69939523 | MS.gene044379:CDS | 5.0% |
| ACAACGGAAAATGCCGGTGA+TGG | - | chr3.3:69938799-69938818 | MS.gene044379:CDS | 50.0% | |
| ACCTTTCCTAAGGGGTGAGA+AGG | + | chr3.3:69939613-69939632 | None:intergenic | 50.0% | |
| AGAGCAGGAACAATGAGCTC+AGG | + | chr3.3:69939040-69939059 | None:intergenic | 50.0% | |
| AGGACTACTTCAGGGACTGT+AGG | + | chr3.3:69938764-69938783 | None:intergenic | 50.0% | |
| AGGTGGAAGTCAACCTTGGA+TGG | - | chr3.3:69939535-69939554 | MS.gene044379:CDS | 50.0% | |
| CAACGGAAAATGCCGGTGAT+GGG | - | chr3.3:69938800-69938819 | MS.gene044379:CDS | 50.0% | |
| CCTGCTAGCACCTTTCCTAA+GGG | + | chr3.3:69939622-69939641 | None:intergenic | 50.0% | |
| CTGCTAGCACCTTTCCTAAG+GGG | + | chr3.3:69939621-69939640 | None:intergenic | 50.0% | |
| CTTGGTCTCACCAAAGCCAT+TGG | - | chr3.3:69939320-69939339 | MS.gene044379:intron | 50.0% | |
| GTTGCTAGCTCCAATGGCTT+TGG | + | chr3.3:69939333-69939352 | None:intergenic | 50.0% | |
| TAACTGCCTTCTCACCCCTT+AGG | - | chr3.3:69939604-69939623 | MS.gene044379:CDS | 50.0% | |
| TTGATTCACTGCAGGAGGGA+TGG | + | chr3.3:69939396-69939415 | None:intergenic | 50.0% | |
| !! | CCTTAGGAAAGGTGCTAGCA+GGG | - | chr3.3:69939620-69939639 | MS.gene044379:intron | 50.0% |
| !! | CTTAGGAAAGGTGCTAGCAG+GGG | - | chr3.3:69939621-69939640 | MS.gene044379:intron | 50.0% |
| AGGAGGGGAGGACTACTTCA+GGG | + | chr3.3:69938772-69938791 | None:intergenic | 55.0% | |
| CACCGGACAACGGAAAATGC+CGG | - | chr3.3:69938793-69938812 | MS.gene044379:CDS | 55.0% | |
| CCCTGCTAGCACCTTTCCTA+AGG | + | chr3.3:69939623-69939642 | None:intergenic | 55.0% | |
| GCCTTCTCACCCCTTAGGAA+AGG | - | chr3.3:69939609-69939628 | MS.gene044379:CDS | 55.0% | |
| TGCAGCTGCTGCATATGGTG+TGG | - | chr3.3:69938910-69938929 | MS.gene044379:CDS | 55.0% | |
| TGCAGGAGGGATGGTTGCAA+AGG | + | chr3.3:69939387-69939406 | None:intergenic | 55.0% | |
| ! | CACCGGCATTTTCCGTTGTC+CGG | + | chr3.3:69938798-69938817 | None:intergenic | 55.0% |
| ! | CATTTTCCGTTGTCCGGTGG+AGG | + | chr3.3:69938792-69938811 | None:intergenic | 55.0% |
| ! | CTTACTGGTTGCTTCCGGTG+CGG | + | chr3.3:69938834-69938853 | None:intergenic | 55.0% |
| !! | AAAATGCCGGTGATGGGCCT+CGG | - | chr3.3:69938806-69938825 | MS.gene044379:CDS | 55.0% |
| !! | CCCTTAGGAAAGGTGCTAGC+AGG | - | chr3.3:69939619-69939638 | MS.gene044379:intron | 55.0% |
| CGCACCGGAAGCAACCAGTA+AGG | - | chr3.3:69938832-69938851 | MS.gene044379:CDS | 60.0% | |
| GAGGAGGGGAGGACTACTTC+AGG | + | chr3.3:69938773-69938792 | None:intergenic | 60.0% | |
| TTCCGTTGTCCGGTGGAGGA+GGG | + | chr3.3:69938788-69938807 | None:intergenic | 60.0% | |
| TTTCCGTTGTCCGGTGGAGG+AGG | + | chr3.3:69938789-69938808 | None:intergenic | 60.0% | |
| ! | CGGCATTTTCCGTTGTCCGG+TGG | + | chr3.3:69938795-69938814 | None:intergenic | 60.0% |
| GTAGTCCTCCCCTCCTCCAC+CGG | - | chr3.3:69938776-69938795 | MS.gene044379:CDS | 65.0% | |
| TCCCCTCCTCCACCGGACAA+CGG | - | chr3.3:69938783-69938802 | MS.gene044379:CDS | 65.0% | |
| TCCGTTGTCCGGTGGAGGAG+GGG | + | chr3.3:69938787-69938806 | None:intergenic | 65.0% | |
| GTTGTCCGGTGGAGGAGGGG+AGG | + | chr3.3:69938784-69938803 | None:intergenic | 70.0% | |
| ! | TTGCTTCCGGTGCGGTGCCG+AGG | + | chr3.3:69938826-69938845 | None:intergenic | 70.0% |
| GATGGGCCTCGGCACCGCAC+CGG | - | chr3.3:69938817-69938836 | MS.gene044379:CDS | 75.0% | |
| ! | GCGGTGCCGAGGCCCATCAC+CGG | + | chr3.3:69938815-69938834 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 69938749 | 69940052 | 69938749 | ID=MS.gene044379 |
| chr3.3 | mRNA | 69938749 | 69940052 | 69938749 | ID=MS.gene044379.t1;Parent=MS.gene044379 |
| chr3.3 | exon | 69939727 | 69940052 | 69939727 | ID=MS.gene044379.t1.exon1;Parent=MS.gene044379.t1 |
| chr3.3 | CDS | 69939727 | 69940052 | 69939727 | ID=cds.MS.gene044379.t1;Parent=MS.gene044379.t1 |
| chr3.3 | exon | 69939386 | 69939629 | 69939386 | ID=MS.gene044379.t1.exon2;Parent=MS.gene044379.t1 |
| chr3.3 | CDS | 69939386 | 69939629 | 69939386 | ID=cds.MS.gene044379.t1;Parent=MS.gene044379.t1 |
| chr3.3 | exon | 69939088 | 69939264 | 69939088 | ID=MS.gene044379.t1.exon3;Parent=MS.gene044379.t1 |
| chr3.3 | CDS | 69939088 | 69939264 | 69939088 | ID=cds.MS.gene044379.t1;Parent=MS.gene044379.t1 |
| chr3.3 | exon | 69938749 | 69938949 | 69938749 | ID=MS.gene044379.t1.exon4;Parent=MS.gene044379.t1 |
| chr3.3 | CDS | 69938749 | 69938949 | 69938749 | ID=cds.MS.gene044379.t1;Parent=MS.gene044379.t1 |
| Gene Sequence |
| Protein sequence |
