Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76146.t1 | XP_024632592.1 | 97.7 | 575 | 13 | 0 | 1 | 575 | 1 | 575 | 0.00E+00 | 1189.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76146.t1 | Q43089 | 88.2 | 552 | 59 | 3 | 1 | 549 | 1 | 549 | 8.5e-299 | 1026.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76146.t1 | A0A396JIU3 | 97.7 | 575 | 13 | 0 | 1 | 575 | 1 | 575 | 0.0e+00 | 1189.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene76146 | -0.804483 | 2.11E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene76146 | -0.802656 | 5.06E-49 | -1.69E-46 |
| MS.gene049281 | MS.gene76146 | 0.807609 | 4.65E-50 | -1.69E-46 |
| MS.gene049312 | MS.gene76146 | 0.82684 | 2.18E-54 | -1.69E-46 |
| MS.gene049320 | MS.gene76146 | -0.805422 | 1.35E-49 | -1.69E-46 |
| MS.gene049573 | MS.gene76146 | 0.817698 | 2.88E-52 | -1.69E-46 |
| MS.gene049627 | MS.gene76146 | -0.803635 | 3.17E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene76146 | -0.801241 | 9.88E-49 | -1.69E-46 |
| MS.gene050129 | MS.gene76146 | 0.816225 | 6.17E-52 | -1.69E-46 |
| MS.gene050363 | MS.gene76146 | 0.840625 | 7.77E-58 | -1.69E-46 |
| MS.gene050381 | MS.gene76146 | 0.891434 | 3.99E-74 | -1.69E-46 |
| MS.gene050463 | MS.gene76146 | 0.810357 | 1.20E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene76146 | -0.841377 | 4.93E-58 | -1.69E-46 |
| MS.gene050528 | MS.gene76146 | 0.80763 | 4.60E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene76146 | -0.800078 | 1.71E-48 | -1.69E-46 |
| MS.gene050612 | MS.gene76146 | -0.816582 | 5.13E-52 | -1.69E-46 |
| MS.gene05080 | MS.gene76146 | -0.808211 | 3.46E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene76146 | -0.836295 | 1.02E-56 | -1.69E-46 |
| MS.gene050871 | MS.gene76146 | -0.838466 | 2.83E-57 | -1.69E-46 |
| MS.gene050883 | MS.gene76146 | 0.859644 | 3.59E-63 | -1.69E-46 |
| MS.gene051044 | MS.gene76146 | 0.804 | 2.66E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene76146 | 0.800118 | 1.67E-48 | -1.69E-46 |
| MS.gene051127 | MS.gene76146 | 0.83368 | 4.64E-56 | -1.69E-46 |
| MS.gene05141 | MS.gene76146 | 0.873136 | 1.86E-67 | -1.69E-46 |
| MS.gene05142 | MS.gene76146 | 0.820119 | 8.12E-53 | -1.69E-46 |
| MS.gene051946 | MS.gene76146 | 0.992109 | 2.36E-191 | -1.69E-46 |
| MS.gene052015 | MS.gene76146 | 0.802129 | 6.49E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene76146 | -0.828079 | 1.10E-54 | -1.69E-46 |
| MS.gene05234 | MS.gene76146 | 0.835157 | 1.98E-56 | -1.69E-46 |
| MS.gene052482 | MS.gene76146 | -0.814141 | 1.79E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene76146 | -0.827518 | 1.50E-54 | -1.69E-46 |
| MS.gene052566 | MS.gene76146 | 0.814313 | 1.64E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene76146 | -0.812583 | 3.94E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene76146 | -0.824886 | 6.33E-54 | -1.69E-46 |
| MS.gene053420 | MS.gene76146 | 0.827403 | 1.60E-54 | -1.69E-46 |
| MS.gene053549 | MS.gene76146 | 0.86153 | 9.62E-64 | -1.69E-46 |
| MS.gene053561 | MS.gene76146 | 0.846489 | 2.10E-59 | -1.69E-46 |
| MS.gene053826 | MS.gene76146 | 0.804452 | 2.15E-49 | -1.69E-46 |
| MS.gene054003 | MS.gene76146 | -0.819543 | 1.10E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene76146 | -0.801895 | 7.26E-49 | -1.69E-46 |
| MS.gene054708 | MS.gene76146 | 0.844414 | 7.67E-59 | -1.69E-46 |
| MS.gene054954 | MS.gene76146 | -0.806745 | 7.09E-50 | -1.69E-46 |
| MS.gene055124 | MS.gene76146 | 0.824447 | 8.03E-54 | -1.69E-46 |
| MS.gene055139 | MS.gene76146 | 0.822793 | 1.96E-53 | -1.69E-46 |
| MS.gene055154 | MS.gene76146 | 0.829042 | 6.42E-55 | -1.69E-46 |
| MS.gene055202 | MS.gene76146 | 0.844342 | 8.02E-59 | -1.69E-46 |
| MS.gene055362 | MS.gene76146 | -0.80915 | 2.18E-50 | -1.69E-46 |
| MS.gene055401 | MS.gene76146 | 0.807076 | 6.03E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene76146 | -0.830439 | 2.93E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene76146 | -0.829433 | 5.16E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene76146 | -0.813187 | 2.91E-51 | -1.69E-46 |
| MS.gene056310 | MS.gene76146 | 0.867843 | 1.01E-65 | -1.69E-46 |
| MS.gene056311 | MS.gene76146 | 0.87075 | 1.15E-66 | -1.69E-46 |
| MS.gene056313 | MS.gene76146 | 0.876491 | 1.34E-68 | -1.69E-46 |
| MS.gene056408 | MS.gene76146 | 0.837455 | 5.15E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene76146 | -0.816693 | 4.85E-52 | -1.69E-46 |
| MS.gene056510 | MS.gene76146 | -0.825983 | 3.48E-54 | -1.69E-46 |
| MS.gene056550 | MS.gene76146 | 0.813932 | 1.99E-51 | -1.69E-46 |
| MS.gene057014 | MS.gene76146 | 0.94107 | 7.87E-101 | -1.69E-46 |
| MS.gene058157 | MS.gene76146 | -0.821189 | 4.61E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene76146 | 0.842103 | 3.17E-58 | -1.69E-46 |
| MS.gene058173 | MS.gene76146 | 0.833358 | 5.58E-56 | -1.69E-46 |
| MS.gene058175 | MS.gene76146 | 0.841987 | 3.40E-58 | -1.69E-46 |
| MS.gene05837 | MS.gene76146 | -0.844118 | 9.21E-59 | -1.69E-46 |
| MS.gene058493 | MS.gene76146 | 0.817904 | 2.59E-52 | -1.69E-46 |
| MS.gene058494 | MS.gene76146 | 0.805745 | 1.15E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene76146 | -0.804637 | 1.96E-49 | -1.69E-46 |
| MS.gene058630 | MS.gene76146 | 0.801198 | 1.01E-48 | -1.69E-46 |
| MS.gene058773 | MS.gene76146 | -0.805098 | 1.57E-49 | -1.69E-46 |
| MS.gene05884 | MS.gene76146 | 0.817125 | 3.88E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene76146 | -0.829553 | 4.83E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene76146 | -0.810958 | 8.90E-51 | -1.69E-46 |
| MS.gene059223 | MS.gene76146 | 0.855444 | 6.28E-62 | -1.69E-46 |
| MS.gene059236 | MS.gene76146 | 0.819609 | 1.06E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene76146 | -0.811687 | 6.18E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene76146 | -0.815573 | 8.63E-52 | -1.69E-46 |
| MS.gene060187 | MS.gene76146 | 0.833365 | 5.56E-56 | -1.69E-46 |
| MS.gene060482 | MS.gene76146 | -0.806815 | 6.85E-50 | -1.69E-46 |
| MS.gene060595 | MS.gene76146 | 0.835815 | 1.35E-56 | -1.69E-46 |
| MS.gene06077 | MS.gene76146 | -0.850756 | 1.38E-60 | -1.69E-46 |
| MS.gene060982 | MS.gene76146 | -0.807755 | 4.33E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76146.t1 | MTR_2g099950 | 97.217 | 575 | 13 | 1 | 1 | 575 | 1 | 572 | 0.0 | 1158 |
| MS.gene76146.t1 | MTR_2g099950 | 98.428 | 509 | 8 | 0 | 67 | 575 | 1 | 509 | 0.0 | 1042 |
| MS.gene76146.t1 | MTR_8g017410 | 78.261 | 575 | 120 | 3 | 3 | 575 | 4 | 575 | 0.0 | 942 |
| MS.gene76146.t1 | MTR_8g017410 | 79.457 | 516 | 102 | 2 | 62 | 575 | 16 | 529 | 0.0 | 864 |
| MS.gene76146.t1 | MTR_5g066380 | 62.651 | 581 | 192 | 11 | 8 | 575 | 6 | 574 | 0.0 | 738 |
| MS.gene76146.t1 | MTR_8g017410 | 74.940 | 419 | 100 | 3 | 3 | 419 | 4 | 419 | 0.0 | 654 |
| MS.gene76146.t1 | MTR_7g105050 | 56.216 | 555 | 234 | 6 | 23 | 574 | 25 | 573 | 0.0 | 632 |
| MS.gene76146.t1 | MTR_1g059700 | 55.635 | 559 | 231 | 9 | 23 | 575 | 21 | 568 | 0.0 | 621 |
| MS.gene76146.t1 | MTR_1g015910 | 55.056 | 534 | 233 | 4 | 44 | 574 | 42 | 571 | 0.0 | 612 |
| MS.gene76146.t1 | MTR_1g015970 | 53.493 | 544 | 246 | 4 | 34 | 574 | 6 | 545 | 0.0 | 607 |
| MS.gene76146.t1 | MTR_1g015910 | 54.457 | 516 | 228 | 4 | 62 | 574 | 17 | 528 | 0.0 | 580 |
| MS.gene76146.t1 | MTR_1g015980 | 49.275 | 552 | 265 | 9 | 33 | 574 | 5 | 551 | 0.0 | 548 |
| MS.gene76146.t1 | MTR_4g101630 | 48.120 | 532 | 262 | 8 | 48 | 574 | 112 | 634 | 8.74e-164 | 481 |
| MS.gene76146.t1 | MTR_3g008530 | 45.936 | 529 | 275 | 7 | 48 | 574 | 104 | 623 | 2.65e-157 | 464 |
| MS.gene76146.t1 | MTR_4g101630 | 47.308 | 520 | 260 | 8 | 60 | 574 | 12 | 522 | 7.66e-156 | 457 |
| MS.gene76146.t1 | MTR_1g015940 | 46.622 | 444 | 207 | 5 | 77 | 517 | 54 | 470 | 4.55e-139 | 412 |
| MS.gene76146.t1 | MTR_1g015920 | 37.838 | 74 | 45 | 1 | 281 | 354 | 34 | 106 | 4.00e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76146.t1 | AT3G13790 | 64.965 | 568 | 187 | 7 | 17 | 575 | 20 | 584 | 0.0 | 758 |
| MS.gene76146.t1 | AT3G13790 | 64.437 | 568 | 187 | 8 | 17 | 575 | 20 | 581 | 0.0 | 746 |
| MS.gene76146.t1 | AT1G55120 | 58.076 | 582 | 220 | 7 | 4 | 575 | 7 | 574 | 0.0 | 694 |
| MS.gene76146.t1 | AT3G13790 | 65.571 | 517 | 167 | 6 | 67 | 575 | 1 | 514 | 0.0 | 691 |
| MS.gene76146.t1 | AT3G13790 | 65.571 | 517 | 167 | 6 | 67 | 575 | 1 | 514 | 0.0 | 691 |
| MS.gene76146.t1 | AT3G13790 | 65.571 | 517 | 167 | 6 | 67 | 575 | 1 | 514 | 0.0 | 691 |
| MS.gene76146.t1 | AT1G55120 | 59.546 | 529 | 202 | 6 | 57 | 575 | 8 | 534 | 0.0 | 649 |
| MS.gene76146.t1 | AT3G13784 | 55.440 | 579 | 233 | 10 | 3 | 572 | 9 | 571 | 0.0 | 647 |
| MS.gene76146.t1 | AT1G55120 | 59.501 | 521 | 199 | 6 | 65 | 575 | 17 | 535 | 0.0 | 642 |
| MS.gene76146.t1 | AT1G55120 | 59.387 | 522 | 200 | 6 | 64 | 575 | 40 | 559 | 0.0 | 641 |
| MS.gene76146.t1 | AT3G13784 | 55.095 | 579 | 235 | 10 | 3 | 572 | 9 | 571 | 0.0 | 640 |
| MS.gene76146.t1 | AT3G13784 | 54.922 | 579 | 233 | 11 | 3 | 572 | 9 | 568 | 0.0 | 635 |
| MS.gene76146.t1 | AT3G13784 | 57.471 | 522 | 208 | 8 | 60 | 572 | 2 | 518 | 0.0 | 613 |
| MS.gene76146.t1 | AT3G52600 | 53.713 | 579 | 249 | 7 | 6 | 571 | 9 | 581 | 0.0 | 605 |
| MS.gene76146.t1 | AT2G36190 | 54.093 | 562 | 239 | 7 | 23 | 571 | 27 | 582 | 0.0 | 597 |
| MS.gene76146.t1 | AT3G52600 | 55.258 | 523 | 218 | 6 | 62 | 571 | 8 | 527 | 0.0 | 567 |
| MS.gene76146.t1 | AT3G52600 | 55.019 | 518 | 217 | 6 | 67 | 571 | 1 | 515 | 0.0 | 558 |
| MS.gene76146.t1 | AT5G11920 | 49.720 | 535 | 256 | 8 | 48 | 575 | 17 | 545 | 2.33e-179 | 518 |
| MS.gene76146.t1 | AT5G11920 | 49.031 | 516 | 250 | 8 | 67 | 575 | 1 | 510 | 5.97e-166 | 482 |
| MS.gene76146.t1 | AT1G62660 | 47.948 | 536 | 265 | 10 | 48 | 575 | 106 | 635 | 7.23e-162 | 476 |
| MS.gene76146.t1 | AT1G12240 | 45.287 | 541 | 273 | 10 | 48 | 575 | 121 | 651 | 5.76e-156 | 462 |
| MS.gene76146.t1 | AT1G62660 | 47.126 | 522 | 262 | 10 | 62 | 575 | 22 | 537 | 1.50e-152 | 449 |
| MS.gene76146.t1 | AT5G11920 | 51.467 | 375 | 170 | 7 | 48 | 416 | 17 | 385 | 1.62e-127 | 381 |
| MS.gene76146.t1 | AT1G62660 | 45.455 | 473 | 244 | 10 | 111 | 575 | 3 | 469 | 4.22e-127 | 382 |
| MS.gene76146.t1 | AT1G62660 | 45.455 | 473 | 244 | 10 | 111 | 575 | 3 | 469 | 4.22e-127 | 382 |
Find 132 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTCTTCTCTCTCATTTA+TGG | 0.118372 | 2.3:+3826950 | MS.gene76146:CDS |
| AAATAAATGCAAGTTCATTT+AGG | 0.163015 | 2.3:+3828110 | MS.gene76146:CDS |
| TCATTTGAAGTGAAAGATTT+TGG | 0.181984 | 2.3:+3829403 | MS.gene76146:CDS |
| AAGAGAGTTAGCAATAAAAT+TGG | 0.204427 | 2.3:-3826935 | None:intergenic |
| TTGTTATATGCTTTCAATAA+TGG | 0.210493 | 2.3:+3830335 | MS.gene76146:CDS |
| CAGATATCAACATAAGAATT+TGG | 0.218589 | 2.3:+3829576 | MS.gene76146:CDS |
| CAATCCAAAAGGTGCTGTTT+GGG | 0.272533 | 2.3:+3827808 | MS.gene76146:CDS |
| ACTGAATTAACACCAGTAAT+TGG | 0.279878 | 2.3:-3829121 | None:intergenic |
| GGGTATTGGAGGGTATTAAT+TGG | 0.290155 | 2.3:+3828163 | MS.gene76146:CDS |
| ACCTTGGTTGGCCAATTGAC+TGG | 0.299819 | 2.3:-3829076 | None:intergenic |
| AATAAATGCAAGTTCATTTA+GGG | 0.302444 | 2.3:+3828111 | MS.gene76146:CDS |
| AAACATGATCACTATTTGAT+TGG | 0.304462 | 2.3:+3828409 | MS.gene76146:CDS |
| CATTCAGTGGTGGAGAGTTT+TGG | 0.312021 | 2.3:+3830248 | MS.gene76146:CDS |
| ACATGTGCTTAAGGTTAGTT+TGG | 0.312368 | 2.3:+3828378 | MS.gene76146:CDS |
| TTAGGGACCCAACAACTTCT+TGG | 0.314057 | 2.3:+3828128 | MS.gene76146:CDS |
| AGACTATTCCAAGGGCTATC+TGG | 0.320133 | 2.3:+3828987 | MS.gene76146:intron |
| AGCTGAATGTAAAGGATGTT+TGG | 0.327426 | 2.3:-3828254 | None:intergenic |
| TTTCCCCAAACAGCACCTTT+TGG | 0.327751 | 2.3:-3827812 | None:intergenic |
| GGTGAATTGATTCCAATTAC+TGG | 0.339584 | 2.3:+3829109 | MS.gene76146:CDS |
| CAAAAGGGTGCATCAGTAAA+AGG | 0.341096 | 2.3:+3829475 | MS.gene76146:CDS |
| ACAATCCAAAAGGTGCTGTT+TGG | 0.345736 | 2.3:+3827807 | MS.gene76146:CDS |
| TCTCAACCGTCAGATATAAA+AGG | 0.347684 | 2.3:+3827905 | MS.gene76146:CDS |
| GTATCAAGACCAATGGTTAA+TGG | 0.350255 | 2.3:-3828331 | None:intergenic |
| GCTATCTGGCTTCATAAATC+AGG | 0.355554 | 2.3:+3829001 | MS.gene76146:CDS |
| TATCCATTTGTCCAATAATT+CGG | 0.361523 | 2.3:-3829431 | None:intergenic |
| GAGAATGATATGACCACATA+TGG | 0.363306 | 2.3:+3829733 | MS.gene76146:CDS |
| AATGGATTCTTATTTAATAC+AGG | 0.363548 | 2.3:-3828313 | None:intergenic |
| AAGTGATAGGCAGTTCTATA+AGG | 0.365296 | 2.3:-3827058 | None:intergenic |
| TTGATGATGGGAAGAATAGA+AGG | 0.368169 | 2.3:+3828539 | MS.gene76146:CDS |
| ACTTCCAACCTCTCAAGAAT+TGG | 0.373141 | 2.3:+3827077 | MS.gene76146:CDS |
| ATTCCAGTGTACAAAATTGC+TGG | 0.375276 | 2.3:-3827968 | None:intergenic |
| TTCCTAGCCAAGAAGTTGTT+GGG | 0.375289 | 2.3:-3828135 | None:intergenic |
| GGCTCAGCAACAATACTTCC+AGG | 0.375946 | 2.3:+3827938 | MS.gene76146:CDS |
| AAAGGTGGTGTTGGACCATT+TGG | 0.375969 | 2.3:+3829493 | MS.gene76146:CDS |
| TATCAAAGGATCTTGTGAAT+TGG | 0.395856 | 2.3:+3827855 | MS.gene76146:CDS |
| CTGCACGTGCTTGCTTCTAA+AGG | 0.407854 | 2.3:+3829517 | MS.gene76146:CDS |
| TGGAAGCAAAATACATAGAA+AGG | 0.411550 | 2.3:+3828183 | MS.gene76146:CDS |
| CAAGATCCTTTGATACTGAA+TGG | 0.413406 | 2.3:-3827847 | None:intergenic |
| GATATAAAAGGTTGTTGGTC+AGG | 0.418374 | 2.3:+3827917 | MS.gene76146:CDS |
| AACATGGTGGGTAGCTTCAA+TGG | 0.424077 | 2.3:-3826987 | None:intergenic |
| TTACATTCAGCTGAAGGAAC+AGG | 0.425951 | 2.3:+3828265 | MS.gene76146:CDS |
| CCTCCCTTGATCACCTTGGT+TGG | 0.427224 | 2.3:-3829088 | None:intergenic |
| CCTTGGTTGGCCAATTGACT+GGG | 0.427404 | 2.3:-3829075 | None:intergenic |
| AGGCCGAATTATTGGACAAA+TGG | 0.428825 | 2.3:+3829428 | MS.gene76146:CDS |
| AACATGATCACTATTTGATT+GGG | 0.429903 | 2.3:+3828410 | MS.gene76146:CDS |
| GCAACAGTAGGTTCCATCAA+TGG | 0.434493 | 2.3:-3828082 | None:intergenic |
| TAGAAGGATCTTGTTGGGTT+GGG | 0.438565 | 2.3:+3828555 | MS.gene76146:CDS |
| CTTGAGAGGTTGGAAGTGAT+AGG | 0.439207 | 2.3:-3827071 | None:intergenic |
| TTTGTAGGACCAATGAGATA+TGG | 0.447970 | 2.3:+3827758 | MS.gene76146:intron |
| AGATCACAAGATTGAATGCT+TGG | 0.449911 | 2.3:+3830372 | MS.gene76146:CDS |
| AAGAATAGAAGGATCTTGTT+GGG | 0.450720 | 2.3:+3828550 | MS.gene76146:CDS |
| ACTTCTTGGCTAGGAAAAGA+TGG | 0.450839 | 2.3:+3828142 | MS.gene76146:CDS |
| TACATTAGCAATCCATGATA+AGG | 0.451158 | 2.3:+3830310 | MS.gene76146:CDS |
| GGCTAGGAAAAGATGGGTAT+TGG | 0.451915 | 2.3:+3828149 | MS.gene76146:CDS |
| TACGTATGAACCCAGTCAAT+TGG | 0.452564 | 2.3:+3829065 | MS.gene76146:CDS |
| GAAGAATAGAAGGATCTTGT+TGG | 0.453865 | 2.3:+3828549 | MS.gene76146:CDS |
| AAAATTGCTGGTTTGCCACC+TGG | 0.460562 | 2.3:-3827956 | None:intergenic |
| TGATGTTAAACATGTGCTTA+AGG | 0.467725 | 2.3:+3828369 | MS.gene76146:CDS |
| TTATCCTCAAATCCATTATC+CGG | 0.468101 | 2.3:-3828463 | None:intergenic |
| TTTCCTAGCCAAGAAGTTGT+TGG | 0.468993 | 2.3:-3828136 | None:intergenic |
| GATGTCAAGAAAGGATGGTC+TGG | 0.472931 | 2.3:+3828604 | MS.gene76146:CDS |
| TTGGCCAACCAAGGTGATCA+AGG | 0.481677 | 2.3:+3829084 | MS.gene76146:CDS |
| TTTATATCTGACGGTTGAGA+TGG | 0.484965 | 2.3:-3827902 | None:intergenic |
| TGTTCCGGATAATGGATTTG+AGG | 0.485113 | 2.3:+3828459 | MS.gene76146:CDS |
| CATATAACAAAGCCTTATCA+TGG | 0.485853 | 2.3:-3830322 | None:intergenic |
| CTGACCCATTACTTAGAGAA+TGG | 0.488472 | 2.3:+3828041 | MS.gene76146:CDS |
| TCTTGTGAATTGGACACCAT+TGG | 0.493731 | 2.3:+3827865 | MS.gene76146:CDS |
| TTCACCTCCCTTGATCACCT+TGG | 0.496200 | 2.3:-3829092 | None:intergenic |
| AAGATGAACTCTCAAGAGTT+CGG | 0.497881 | 2.3:-3827012 | None:intergenic |
| ATAGAAGGATCTTGTTGGGT+TGG | 0.498018 | 2.3:+3828554 | MS.gene76146:CDS |
| TGGGACTTATGATACTGTTA+AGG | 0.500179 | 2.3:+3828429 | MS.gene76146:CDS |
| TGATCCAATTCTTGAGAGGT+TGG | 0.501083 | 2.3:-3827081 | None:intergenic |
| TTCTACCAATACAATCCAAA+AGG | 0.504711 | 2.3:+3827797 | MS.gene76146:CDS |
| TTATGAAGCCAGATAGCCCT+TGG | 0.506124 | 2.3:-3828995 | None:intergenic |
| AATGTGTTGAGATATGATTA+TGG | 0.507273 | 2.3:+3828490 | MS.gene76146:CDS |
| GCAAGCACGTGCAGACCAAA+TGG | 0.509880 | 2.3:-3829508 | None:intergenic |
| TTATATCTGACGGTTGAGAT+GGG | 0.511411 | 2.3:-3827901 | None:intergenic |
| CGTCAGATATAAAAGGTTGT+TGG | 0.511481 | 2.3:+3827912 | MS.gene76146:CDS |
| ATAAGGTTGATCGTGATTTG+AGG | 0.514989 | 2.3:-3827041 | None:intergenic |
| TACTGGTGTTAATTCAGTAC+AGG | 0.515915 | 2.3:+3829126 | MS.gene76146:CDS |
| AATAAGAATCCATTAACCAT+TGG | 0.517810 | 2.3:+3828322 | MS.gene76146:CDS |
| TAGGAAAAGATGGGTATTGG+AGG | 0.517843 | 2.3:+3828152 | MS.gene76146:CDS |
| TCATGTGCAGCGATCAAAGC+AGG | 0.519327 | 2.3:+3829602 | MS.gene76146:CDS |
| ACATGGTGGGTAGCTTCAAT+GGG | 0.520184 | 2.3:-3826986 | None:intergenic |
| TAAAGTCCTCCATATCTCAT+TGG | 0.522533 | 2.3:-3827767 | None:intergenic |
| GAAGCTGTCACTAAGAACTT+TGG | 0.524205 | 2.3:+3829786 | MS.gene76146:CDS |
| GGAAGCAAAATACATAGAAA+GGG | 0.524791 | 2.3:+3828184 | MS.gene76146:CDS |
| AAGATCCTTTGATACTGAAT+GGG | 0.527419 | 2.3:-3827846 | None:intergenic |
| CAAAACTCTCCACCACTGAA+TGG | 0.531049 | 2.3:-3830247 | None:intergenic |
| CAGGGAAACAGTTGGTGCAA+TGG | 0.536764 | 2.3:+3829020 | MS.gene76146:CDS |
| GCATCAGTAAAAGGTGGTGT+TGG | 0.545185 | 2.3:+3829484 | MS.gene76146:CDS |
| CTGTTTGGGGAAATATTGTG+TGG | 0.551490 | 2.3:+3827822 | MS.gene76146:CDS |
| CAGCTGAAGGAACAGGAATG+TGG | 0.551552 | 2.3:+3828272 | MS.gene76146:CDS |
| TATCTGACGGTTGAGATGGG+TGG | 0.553345 | 2.3:-3827898 | None:intergenic |
| TGAATTTGCAGACTATTCCA+AGG | 0.553988 | 2.3:+3828978 | MS.gene76146:intron |
| GTTCCTTCAGCTGAATGTAA+AGG | 0.562040 | 2.3:-3828262 | None:intergenic |
| AGCTGAAGGAACAGGAATGT+GGG | 0.562527 | 2.3:+3828273 | MS.gene76146:CDS |
| AGTGACAGCTTCTCATGAAG+TGG | 0.562807 | 2.3:-3829775 | None:intergenic |
| CATCCTTTACATTCAGCTGA+AGG | 0.563353 | 2.3:+3828259 | MS.gene76146:CDS |
| TTATCATGGATTGCTAATGT+AGG | 0.564154 | 2.3:-3830308 | None:intergenic |
| GTTGTTGATGATGTCAAGAA+AGG | 0.565288 | 2.3:+3828595 | MS.gene76146:CDS |
| CTATCTGGCTTCATAAATCA+GGG | 0.565560 | 2.3:+3829002 | MS.gene76146:CDS |
| CCGTTGATCCAATTCTTGAG+AGG | 0.568960 | 2.3:-3827085 | None:intergenic |
| GGTCTTGATACATCTATGAA+TGG | 0.571013 | 2.3:+3828343 | MS.gene76146:CDS |
| CTTCTTGGCTAGGAAAAGAT+GGG | 0.573803 | 2.3:+3828143 | MS.gene76146:CDS |
| TCTCAAGAGTTCGGTAAACA+TGG | 0.574499 | 2.3:-3827003 | None:intergenic |
| GACCCAACAACTTCTTGGCT+AGG | 0.588645 | 2.3:+3828133 | MS.gene76146:CDS |
| GTGGGCCCATTCAGTATCAA+AGG | 0.592486 | 2.3:+3827841 | MS.gene76146:CDS |
| ATCCACAAAAGTCCCATATG+TGG | 0.593272 | 2.3:-3829746 | None:intergenic |
| AGAATGATATGACCACATAT+GGG | 0.594872 | 2.3:+3829734 | MS.gene76146:CDS |
| CAAGAGTTCGGTAAACATGG+TGG | 0.598399 | 2.3:-3827000 | None:intergenic |
| CATAGATGTATCAAGACCAA+TGG | 0.605287 | 2.3:-3828338 | None:intergenic |
| CCCAGTCAATTGGCCAACCA+AGG | 0.606107 | 2.3:+3829075 | MS.gene76146:CDS |
| TGGCCAACCAAGGTGATCAA+GGG | 0.606547 | 2.3:+3829085 | MS.gene76146:CDS |
| TGTTTGGGGAAATATTGTGT+GGG | 0.611046 | 2.3:+3827823 | MS.gene76146:CDS |
| GTGACAGCTTCTCATGAAGT+GGG | 0.617462 | 2.3:-3829774 | None:intergenic |
| AAGAGTTCGGTAAACATGGT+GGG | 0.619926 | 2.3:-3826999 | None:intergenic |
| GTAGGACCAATGAGATATGG+AGG | 0.621441 | 2.3:+3827761 | MS.gene76146:intron |
| TCATAAATCAGGGAAACAGT+TGG | 0.623557 | 2.3:+3829012 | MS.gene76146:CDS |
| GGGTGGATTGCATGATCCAA+TGG | 0.626420 | 2.3:-3827881 | None:intergenic |
| ACAGATTGACCATTCAGTGG+TGG | 0.630975 | 2.3:+3830238 | MS.gene76146:intron |
| CCTCTCAAGAATTGGATCAA+CGG | 0.632578 | 2.3:+3827085 | MS.gene76146:CDS |
| AATGGACATGCAGACCCCAA+TGG | 0.633436 | 2.3:+3827237 | MS.gene76146:intron |
| TTGATGATGTCAAGAAAGGA+TGG | 0.633579 | 2.3:+3828599 | MS.gene76146:CDS |
| AATCCAAAAGGTGCTGTTTG+GGG | 0.637524 | 2.3:+3827809 | MS.gene76146:CDS |
| GAATTTGCAGACTATTCCAA+GGG | 0.640212 | 2.3:+3828979 | MS.gene76146:intron |
| AGGAAAAGATGGGTATTGGA+GGG | 0.661351 | 2.3:+3828153 | MS.gene76146:CDS |
| AAGGGTGCATCAGTAAAAGG+TGG | 0.677299 | 2.3:+3829478 | MS.gene76146:CDS |
| CCAACCAAGGTGATCAAGGG+AGG | 0.681398 | 2.3:+3829088 | MS.gene76146:CDS |
| TTGACAGATTGACCATTCAG+TGG | 0.705722 | 2.3:+3830235 | MS.gene76146:intron |
| GAGGATTGAACTAACCATTG+GGG | 0.713756 | 2.3:-3827251 | None:intergenic |
| TCAGCAACAATACTTCCAGG+TGG | 0.756866 | 2.3:+3827941 | MS.gene76146:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATAAAAAATAAT+TGG | + | chr2.3:3828900-3828919 | MS.gene76146:intron | 0.0% |
| !!! | ATTATTTTTTATTTTTTTTA+AGG | - | chr2.3:3828900-3828919 | None:intergenic | 0.0% |
| !! | AAAATTCACTTTAATATAAA+AGG | - | chr2.3:3827734-3827753 | None:intergenic | 10.0% |
| !!! | GATATGATTTTTAATTTTTT+AGG | + | chr2.3:3828753-3828772 | MS.gene76146:intron | 10.0% |
| !!! | GTTTTAATTTTACTAATTTA+TGG | + | chr2.3:3829818-3829837 | MS.gene76146:intron | 10.0% |
| !! | AATTATTGGTACATAATTTA+AGG | - | chr2.3:3829640-3829659 | None:intergenic | 15.0% |
| !!! | AAAGTAAAAATTTTGTTGAT+TGG | + | chr2.3:3828224-3828243 | MS.gene76146:CDS | 15.0% |
| !!! | AAATAGTTTATTGATTTCTT+TGG | + | chr2.3:3829964-3829983 | MS.gene76146:intron | 15.0% |
| !!! | AAGTAAAAATTTTGTTGATT+GGG | + | chr2.3:3828225-3828244 | MS.gene76146:CDS | 15.0% |
| !!! | ATATCTTTTAATACTTTGAT+AGG | + | chr2.3:3829695-3829714 | MS.gene76146:intron | 15.0% |
| !!! | GATGTTTTGTTTTTTTTTTT+TGG | + | chr2.3:3827667-3827686 | MS.gene76146:intron | 15.0% |
| !!! | TAACTTTGTTTTGAAATTAT+TGG | - | chr2.3:3829654-3829673 | None:intergenic | 15.0% |
| !! | AAATAAATGCAAGTTCATTT+AGG | + | chr2.3:3828110-3828129 | MS.gene76146:CDS | 20.0% |
| !! | AAATACAACCTATATAAGAA+AGG | + | chr2.3:3829306-3829325 | MS.gene76146:intron | 20.0% |
| !! | AATAAATGCAAGTTCATTTA+GGG | + | chr2.3:3828111-3828130 | MS.gene76146:CDS | 20.0% |
| !! | AATACAACCTATATAAGAAA+GGG | + | chr2.3:3829307-3829326 | MS.gene76146:intron | 20.0% |
| !! | GAAAGTGGTATAAAAAAATT+GGG | - | chr2.3:3827324-3827343 | None:intergenic | 20.0% |
| !! | TGAAAGTGGTATAAAAAAAT+TGG | - | chr2.3:3827325-3827344 | None:intergenic | 20.0% |
| !! | TTGTTATATGCTTTCAATAA+TGG | + | chr2.3:3830335-3830354 | MS.gene76146:CDS | 20.0% |
| !! | TTTAATACAGGAAAAAAATC+AGG | - | chr2.3:3828304-3828323 | None:intergenic | 20.0% |
| !!! | AAAATTTGTTAAATAGTCCA+GGG | - | chr2.3:3827570-3827589 | None:intergenic | 20.0% |
| !!! | AAATTTAAAACATGTGTCAT+CGG | - | chr2.3:3830093-3830112 | None:intergenic | 20.0% |
| !!! | AAGTGAATTTTTGTTTTTGT+AGG | + | chr2.3:3827743-3827762 | MS.gene76146:intron | 20.0% |
| !!! | AATGGATTCTTATTTAATAC+AGG | - | chr2.3:3828316-3828335 | None:intergenic | 20.0% |
| !!! | AGCATTGATATTTAACAAAT+GGG | - | chr2.3:3827351-3827370 | None:intergenic | 20.0% |
| !!! | ATAGTTTTTACATGTCAATA+TGG | + | chr2.3:3829157-3829176 | MS.gene76146:intron | 20.0% |
| !!! | CAAAATTTGCTAACTTTATA+TGG | + | chr2.3:3830006-3830025 | MS.gene76146:intron | 20.0% |
| !!! | CATATAAAGTTAGCAAATTT+TGG | - | chr2.3:3830008-3830027 | None:intergenic | 20.0% |
| !!! | CTAAAACATTTTTTGATGAT+GGG | + | chr2.3:3828527-3828546 | MS.gene76146:CDS | 20.0% |
| !!! | TAAAATTTGTTAAATAGTCC+AGG | - | chr2.3:3827571-3827590 | None:intergenic | 20.0% |
| !!! | TAGCATTGATATTTAACAAA+TGG | - | chr2.3:3827352-3827371 | None:intergenic | 20.0% |
| !!! | TCTAAAACATTTTTTGATGA+TGG | + | chr2.3:3828526-3828545 | MS.gene76146:CDS | 20.0% |
| !!! | TTTTGAACTTGATGATTATT+TGG | - | chr2.3:3827998-3828017 | None:intergenic | 20.0% |
| ! | AAACATGATCACTATTTGAT+TGG | + | chr2.3:3828409-3828428 | MS.gene76146:CDS | 25.0% |
| ! | AACATGATCACTATTTGATT+GGG | + | chr2.3:3828410-3828429 | MS.gene76146:CDS | 25.0% |
| ! | AAGAGAGTTAGCAATAAAAT+TGG | - | chr2.3:3826938-3826957 | None:intergenic | 25.0% |
| ! | AATAAGAATCCATTAACCAT+TGG | + | chr2.3:3828322-3828341 | MS.gene76146:CDS | 25.0% |
| ! | AATGTGTTGAGATATGATTA+TGG | + | chr2.3:3828490-3828509 | MS.gene76146:CDS | 25.0% |
| ! | AATTGTTATATACTAGTGCA+TGG | + | chr2.3:3828923-3828942 | MS.gene76146:intron | 25.0% |
| ! | AGACAAAAATGACCAAATAT+AGG | - | chr2.3:3830183-3830202 | None:intergenic | 25.0% |
| ! | CAGATATCAACATAAGAATT+TGG | + | chr2.3:3829576-3829595 | MS.gene76146:CDS | 25.0% |
| ! | GATTAAAATATTTAGCGCAA+GGG | - | chr2.3:3827155-3827174 | None:intergenic | 25.0% |
| ! | GGAATCATAAACACAATAAT+TGG | + | chr2.3:3829839-3829858 | MS.gene76146:intron | 25.0% |
| ! | GTTAAATATCAATGCTATAG+AGG | + | chr2.3:3827355-3827374 | MS.gene76146:intron | 25.0% |
| ! | TAACTTTATATGGATGTAGA+TGG | + | chr2.3:3830016-3830035 | MS.gene76146:intron | 25.0% |
| ! | TATCCATTTGTCCAATAATT+CGG | - | chr2.3:3829434-3829453 | None:intergenic | 25.0% |
| ! | TGATATTAACACGTCAATAT+TGG | - | chr2.3:3829204-3829223 | None:intergenic | 25.0% |
| ! | TGATTAAAATATTTAGCGCA+AGG | - | chr2.3:3827156-3827175 | None:intergenic | 25.0% |
| ! | TGTTTGTGTGTAAAATACAA+GGG | - | chr2.3:3827279-3827298 | None:intergenic | 25.0% |
| ! | TTAAATTAATCAATAGTCCC+TGG | + | chr2.3:3827550-3827569 | MS.gene76146:intron | 25.0% |
| !! | AATTTAAAACATGTGTCATC+GGG | - | chr2.3:3830092-3830111 | None:intergenic | 25.0% |
| !! | ATAAAGTTAGCAAATTTTGG+TGG | - | chr2.3:3830005-3830024 | None:intergenic | 25.0% |
| !! | ATGATTTTATCAATACTTCG+TGG | - | chr2.3:3829922-3829941 | None:intergenic | 25.0% |
| !! | CAAATTTTGTGTAGTCAAAA+GGG | + | chr2.3:3829460-3829479 | MS.gene76146:CDS | 25.0% |
| !! | TTTTCCATTCTCTAAGTAAT+GGG | - | chr2.3:3828048-3828067 | None:intergenic | 25.0% |
| !! | TTTTTCCATTCTCTAAGTAA+TGG | - | chr2.3:3828049-3828068 | None:intergenic | 25.0% |
| !!! | ATTTGGTCATTTTTGTCTTT+TGG | + | chr2.3:3830185-3830204 | MS.gene76146:intron | 25.0% |
| !!! | CTTTTGACTACACAAAATTT+GGG | - | chr2.3:3829461-3829480 | None:intergenic | 25.0% |
| !!! | GTGTATTTTTTTTCTTCTAC+AGG | + | chr2.3:3829366-3829385 | MS.gene76146:intron | 25.0% |
| !!! | TAAAGTTAGCAAATTTTGGT+GGG | - | chr2.3:3830004-3830023 | None:intergenic | 25.0% |
| !!! | TCATTTGAAGTGAAAGATTT+TGG | + | chr2.3:3829403-3829422 | MS.gene76146:CDS | 25.0% |
| !!! | TTTATTTTGTTAGCAACAGT+AGG | - | chr2.3:3828097-3828116 | None:intergenic | 25.0% |
| !!! | TTTTGACTACACAAAATTTG+GGG | - | chr2.3:3829460-3829479 | None:intergenic | 25.0% |
| AAGAATAGAAGGATCTTGTT+GGG | + | chr2.3:3828550-3828569 | MS.gene76146:CDS | 30.0% | |
| AAGATCCTTTGATACTGAAT+GGG | - | chr2.3:3827849-3827868 | None:intergenic | 30.0% | |
| AATGCAGAGTTTCCTATATT+TGG | + | chr2.3:3830168-3830187 | MS.gene76146:intron | 30.0% | |
| ACATGTTATGCTGATCAAAA+TGG | + | chr2.3:3827219-3827238 | MS.gene76146:intron | 30.0% | |
| ACTGAATTAACACCAGTAAT+TGG | - | chr2.3:3829124-3829143 | None:intergenic | 30.0% | |
| AGAATGATATGACCACATAT+GGG | + | chr2.3:3829734-3829753 | MS.gene76146:CDS | 30.0% | |
| ATCACCAAAAAATCCATTGA+TGG | + | chr2.3:3828069-3828088 | MS.gene76146:CDS | 30.0% | |
| CAAGCAAAGTAGAAATTAGT+TGG | - | chr2.3:3827186-3827205 | None:intergenic | 30.0% | |
| CAATATTGTATCTCGTATGA+CGG | + | chr2.3:3829222-3829241 | MS.gene76146:intron | 30.0% | |
| GGAAGCAAAATACATAGAAA+GGG | + | chr2.3:3828184-3828203 | MS.gene76146:CDS | 30.0% | |
| GTGTTTGTGTGTAAAATACA+AGG | - | chr2.3:3827280-3827299 | None:intergenic | 30.0% | |
| TAACAAATGGGTAATGAAAG+TGG | - | chr2.3:3827339-3827358 | None:intergenic | 30.0% | |
| TACATTAGCAATCCATGATA+AGG | + | chr2.3:3830310-3830329 | MS.gene76146:CDS | 30.0% | |
| TATCAAAGGATCTTGTGAAT+TGG | + | chr2.3:3827855-3827874 | MS.gene76146:CDS | 30.0% | |
| TGATGTTAAACATGTGCTTA+AGG | + | chr2.3:3828369-3828388 | MS.gene76146:CDS | 30.0% | |
| TGGAAGCAAAATACATAGAA+AGG | + | chr2.3:3828183-3828202 | MS.gene76146:CDS | 30.0% | |
| TTATCCTCAAATCCATTATC+CGG | - | chr2.3:3828466-3828485 | None:intergenic | 30.0% | |
| TTCTACCAATACAATCCAAA+AGG | + | chr2.3:3827797-3827816 | MS.gene76146:CDS | 30.0% | |
| ! | AATGGGTCAGACATATTTTT+GGG | - | chr2.3:3828031-3828050 | None:intergenic | 30.0% |
| ! | ACATCCTGATTTTGTAAAGT+AGG | + | chr2.3:3827424-3827443 | MS.gene76146:intron | 30.0% |
| ! | CAACAACCTTTTATATCTGA+CGG | - | chr2.3:3827914-3827933 | None:intergenic | 30.0% |
| ! | CATATAACAAAGCCTTATCA+TGG | - | chr2.3:3830325-3830344 | None:intergenic | 30.0% |
| ! | CATCCTGATTTTGTAAAGTA+GGG | + | chr2.3:3827425-3827444 | MS.gene76146:intron | 30.0% |
| ! | CCAAATTTTGTGTAGTCAAA+AGG | + | chr2.3:3829459-3829478 | MS.gene76146:CDS | 30.0% |
| ! | TCATCCAAAAAGTGTAGAAA+AGG | - | chr2.3:3827694-3827713 | None:intergenic | 30.0% |
| ! | TTATCATGGATTGCTAATGT+AGG | - | chr2.3:3830311-3830330 | None:intergenic | 30.0% |
| !! | AAAAAATTGGGAGTGTTTGA+AGG | - | chr2.3:3827312-3827331 | None:intergenic | 30.0% |
| !! | CCTTTTGACTACACAAAATT+TGG | - | chr2.3:3829462-3829481 | None:intergenic | 30.0% |
| !! | TAATGGGTCAGACATATTTT+TGG | - | chr2.3:3828032-3828051 | None:intergenic | 30.0% |
| !! | TGAAGTGAAAGATTTTGGAA+AGG | + | chr2.3:3829408-3829427 | MS.gene76146:CDS | 30.0% |
| !! | TGTTAAGGATGTTTTTGTTC+CGG | + | chr2.3:3828444-3828463 | MS.gene76146:CDS | 30.0% |
| !!! | AGATTTTCAAGTTCTTTCAC+TGG | - | chr2.3:3829046-3829065 | None:intergenic | 30.0% |
| !!! | TACTTCGTGGTTTTATAATC+AGG | - | chr2.3:3829909-3829928 | None:intergenic | 30.0% |
| AAGAGGATTGAACTAACCAT+TGG | - | chr2.3:3827256-3827275 | None:intergenic | 35.0% | |
| AAGATGAACTCTCAAGAGTT+CGG | - | chr2.3:3827015-3827034 | None:intergenic | 35.0% | |
| AAGTGATAGGCAGTTCTATA+AGG | - | chr2.3:3827061-3827080 | None:intergenic | 35.0% | |
| ACTCTCTTCTCTCTCATTTA+TGG | + | chr2.3:3826950-3826969 | MS.gene76146:CDS | 35.0% | |
| AGAGGATTGAACTAACCATT+GGG | - | chr2.3:3827255-3827274 | None:intergenic | 35.0% | |
| AGATCACAAGATTGAATGCT+TGG | + | chr2.3:3830372-3830391 | MS.gene76146:CDS | 35.0% | |
| AGCTGAATGTAAAGGATGTT+TGG | - | chr2.3:3828257-3828276 | None:intergenic | 35.0% | |
| ATTCCAGTGTACAAAATTGC+TGG | - | chr2.3:3827971-3827990 | None:intergenic | 35.0% | |
| CAAGATCCTTTGATACTGAA+TGG | - | chr2.3:3827850-3827869 | None:intergenic | 35.0% | |
| CATAGATGTATCAAGACCAA+TGG | - | chr2.3:3828341-3828360 | None:intergenic | 35.0% | |
| CGTCAGATATAAAAGGTTGT+TGG | + | chr2.3:3827912-3827931 | MS.gene76146:CDS | 35.0% | |
| GAAGAATAGAAGGATCTTGT+TGG | + | chr2.3:3828549-3828568 | MS.gene76146:CDS | 35.0% | |
| GAATTTGCAGACTATTCCAA+GGG | + | chr2.3:3828979-3828998 | MS.gene76146:intron | 35.0% | |
| GAGAATGATATGACCACATA+TGG | + | chr2.3:3829733-3829752 | MS.gene76146:CDS | 35.0% | |
| GATATAAAAGGTTGTTGGTC+AGG | + | chr2.3:3827917-3827936 | MS.gene76146:CDS | 35.0% | |
| GCATGTACCCTTTCTTATAT+AGG | - | chr2.3:3829317-3829336 | None:intergenic | 35.0% | |
| GGTCTTGATACATCTATGAA+TGG | + | chr2.3:3828343-3828362 | MS.gene76146:CDS | 35.0% | |
| GTATCAAGACCAATGGTTAA+TGG | - | chr2.3:3828334-3828353 | None:intergenic | 35.0% | |
| TAAAGTCCTCCATATCTCAT+TGG | - | chr2.3:3827770-3827789 | None:intergenic | 35.0% | |
| TCATAAATCAGGGAAACAGT+TGG | + | chr2.3:3829012-3829031 | MS.gene76146:CDS | 35.0% | |
| TCTCAACCGTCAGATATAAA+AGG | + | chr2.3:3827905-3827924 | MS.gene76146:CDS | 35.0% | |
| TGAATTTGCAGACTATTCCA+AGG | + | chr2.3:3828978-3828997 | MS.gene76146:intron | 35.0% | |
| TGATCAGCATAACATGTCAA+AGG | - | chr2.3:3827216-3827235 | None:intergenic | 35.0% | |
| TGGGACTTATGATACTGTTA+AGG | + | chr2.3:3828429-3828448 | MS.gene76146:CDS | 35.0% | |
| TGTCCCTACTTTACAAAATC+AGG | - | chr2.3:3827431-3827450 | None:intergenic | 35.0% | |
| TGTGTAAAATACAAGGGAAG+AGG | - | chr2.3:3827273-3827292 | None:intergenic | 35.0% | |
| TGTTTGGGGAAATATTGTGT+GGG | + | chr2.3:3827823-3827842 | MS.gene76146:CDS | 35.0% | |
| TTATATCTGACGGTTGAGAT+GGG | - | chr2.3:3827904-3827923 | None:intergenic | 35.0% | |
| TTTATATCTGACGGTTGAGA+TGG | - | chr2.3:3827905-3827924 | None:intergenic | 35.0% | |
| TTTGTAGGACCAATGAGATA+TGG | + | chr2.3:3827758-3827777 | MS.gene76146:intron | 35.0% | |
| ! | AAACCAGCAATTTTGTACAC+TGG | + | chr2.3:3827965-3827984 | MS.gene76146:CDS | 35.0% |
| ! | ACATGTGCTTAAGGTTAGTT+TGG | + | chr2.3:3828378-3828397 | MS.gene76146:CDS | 35.0% |
| ! | ATAAGGTTGATCGTGATTTG+AGG | - | chr2.3:3827044-3827063 | None:intergenic | 35.0% |
| ! | CTATCTGGCTTCATAAATCA+GGG | + | chr2.3:3829002-3829021 | MS.gene76146:CDS | 35.0% |
| ! | CTGGAATCCATGTAAGTTTT+GGG | + | chr2.3:3828623-3828642 | MS.gene76146:intron | 35.0% |
| ! | GGTGAATTGATTCCAATTAC+TGG | + | chr2.3:3829109-3829128 | MS.gene76146:CDS | 35.0% |
| ! | TACTGGTGTTAATTCAGTAC+AGG | + | chr2.3:3829126-3829145 | MS.gene76146:CDS | 35.0% |
| ! | TGGAATCCATGTAAGTTTTG+GGG | + | chr2.3:3828624-3828643 | MS.gene76146:intron | 35.0% |
| ! | TGGTCCTTTTCTACACTTTT+TGG | + | chr2.3:3827687-3827706 | MS.gene76146:intron | 35.0% |
| !! | GATGTTTTTGTTCCGGATAA+TGG | + | chr2.3:3828451-3828470 | MS.gene76146:CDS | 35.0% |
| !! | GTTGTTGATGATGTCAAGAA+AGG | + | chr2.3:3828595-3828614 | MS.gene76146:CDS | 35.0% |
| !! | TCTGGAATCCATGTAAGTTT+TGG | + | chr2.3:3828622-3828641 | MS.gene76146:intron | 35.0% |
| !! | TTGATGATGGGAAGAATAGA+AGG | + | chr2.3:3828539-3828558 | MS.gene76146:CDS | 35.0% |
| !! | TTGATGATGTCAAGAAAGGA+TGG | + | chr2.3:3828599-3828618 | MS.gene76146:CDS | 35.0% |
| !! | TTTTGGAAAGGCCGAATTAT+TGG | + | chr2.3:3829420-3829439 | MS.gene76146:CDS | 35.0% |
| !!! | GGTTCCATCAATGGATTTTT+TGG | - | chr2.3:3828076-3828095 | None:intergenic | 35.0% |
| !!! | GTCAGACATATTTTTGGGTA+TGG | - | chr2.3:3828026-3828045 | None:intergenic | 35.0% |
| AAGAGTTCGGTAAACATGGT+GGG | - | chr2.3:3827002-3827021 | None:intergenic | 40.0% | |
| AAGTAGCCCCAAAACTTACA+TGG | - | chr2.3:3828633-3828652 | None:intergenic | 40.0% | |
| ACTTCCAACCTCTCAAGAAT+TGG | + | chr2.3:3827077-3827096 | MS.gene76146:CDS | 40.0% | |
| ACTTCTTGGCTAGGAAAAGA+TGG | + | chr2.3:3828142-3828161 | MS.gene76146:CDS | 40.0% | |
| AGGCCGAATTATTGGACAAA+TGG | + | chr2.3:3829428-3829447 | MS.gene76146:CDS | 40.0% | |
| ATAGAAGGATCTTGTTGGGT+TGG | + | chr2.3:3828554-3828573 | MS.gene76146:CDS | 40.0% | |
| ATCCACAAAAGTCCCATATG+TGG | - | chr2.3:3829749-3829768 | None:intergenic | 40.0% | |
| CATCCTTTACATTCAGCTGA+AGG | + | chr2.3:3828259-3828278 | MS.gene76146:CDS | 40.0% | |
| CCTCTCAAGAATTGGATCAA+CGG | + | chr2.3:3827085-3827104 | MS.gene76146:CDS | 40.0% | |
| CTGACCCATTACTTAGAGAA+TGG | + | chr2.3:3828041-3828060 | MS.gene76146:CDS | 40.0% | |
| CTGTTTGGGGAAATATTGTG+TGG | + | chr2.3:3827822-3827841 | MS.gene76146:CDS | 40.0% | |
| CTTCTTGGCTAGGAAAAGAT+GGG | + | chr2.3:3828143-3828162 | MS.gene76146:CDS | 40.0% | |
| GAAGCTGTCACTAAGAACTT+TGG | + | chr2.3:3829786-3829805 | MS.gene76146:CDS | 40.0% | |
| GAGGATTGAACTAACCATTG+GGG | - | chr2.3:3827254-3827273 | None:intergenic | 40.0% | |
| GGATGTAGATGGTCAAGATA+TGG | + | chr2.3:3830027-3830046 | MS.gene76146:intron | 40.0% | |
| GTTCCTTCAGCTGAATGTAA+AGG | - | chr2.3:3828265-3828284 | None:intergenic | 40.0% | |
| TACGTATGAACCCAGTCAAT+TGG | + | chr2.3:3829065-3829084 | MS.gene76146:CDS | 40.0% | |
| TAGAAGGATCTTGTTGGGTT+GGG | + | chr2.3:3828555-3828574 | MS.gene76146:CDS | 40.0% | |
| TCTCAAGAGTTCGGTAAACA+TGG | - | chr2.3:3827006-3827025 | None:intergenic | 40.0% | |
| TCTTGTGAATTGGACACCAT+TGG | + | chr2.3:3827865-3827884 | MS.gene76146:CDS | 40.0% | |
| TGATCCAATTCTTGAGAGGT+TGG | - | chr2.3:3827084-3827103 | None:intergenic | 40.0% | |
| TTACATTCAGCTGAAGGAAC+AGG | + | chr2.3:3828265-3828284 | MS.gene76146:CDS | 40.0% | |
| TTCCTAGCCAAGAAGTTGTT+GGG | - | chr2.3:3828138-3828157 | None:intergenic | 40.0% | |
| TTGACAGATTGACCATTCAG+TGG | + | chr2.3:3830235-3830254 | MS.gene76146:intron | 40.0% | |
| TTTCCTAGCCAAGAAGTTGT+TGG | - | chr2.3:3828139-3828158 | None:intergenic | 40.0% | |
| ! | AATTAGTTTGACACGCGTCT+AGG | - | chr2.3:3828808-3828827 | None:intergenic | 40.0% |
| ! | ATTAGTTTGACACGCGTCTA+GGG | - | chr2.3:3828807-3828826 | None:intergenic | 40.0% |
| ! | CAAAAGGGTGCATCAGTAAA+AGG | + | chr2.3:3829475-3829494 | MS.gene76146:CDS | 40.0% |
| ! | CAGCACCTTTTGGATTGTAT+TGG | - | chr2.3:3827805-3827824 | None:intergenic | 40.0% |
| ! | GCTATCTGGCTTCATAAATC+AGG | + | chr2.3:3829001-3829020 | MS.gene76146:CDS | 40.0% |
| !! | AATCCAAAAGGTGCTGTTTG+GGG | + | chr2.3:3827809-3827828 | MS.gene76146:CDS | 40.0% |
| !! | ACAATCCAAAAGGTGCTGTT+TGG | + | chr2.3:3827807-3827826 | MS.gene76146:CDS | 40.0% |
| !! | AGGAAAAGATGGGTATTGGA+GGG | + | chr2.3:3828153-3828172 | MS.gene76146:CDS | 40.0% |
| !! | CAATCCAAAAGGTGCTGTTT+GGG | + | chr2.3:3827808-3827827 | MS.gene76146:CDS | 40.0% |
| !! | GGGTATTGGAGGGTATTAAT+TGG | + | chr2.3:3828163-3828182 | MS.gene76146:CDS | 40.0% |
| !! | TAGGAAAAGATGGGTATTGG+AGG | + | chr2.3:3828152-3828171 | MS.gene76146:CDS | 40.0% |
| !! | TGTTCCGGATAATGGATTTG+AGG | + | chr2.3:3828459-3828478 | MS.gene76146:CDS | 40.0% |
| ACAGATTGACCATTCAGTGG+TGG | + | chr2.3:3830238-3830257 | MS.gene76146:intron | 45.0% | |
| AGACTATTCCAAGGGCTATC+TGG | + | chr2.3:3828987-3829006 | MS.gene76146:intron | 45.0% | |
| AGCTGAAGGAACAGGAATGT+GGG | + | chr2.3:3828273-3828292 | MS.gene76146:CDS | 45.0% | |
| AGTGACAGCTTCTCATGAAG+TGG | - | chr2.3:3829778-3829797 | None:intergenic | 45.0% | |
| CAAAACTCTCCACCACTGAA+TGG | - | chr2.3:3830250-3830269 | None:intergenic | 45.0% | |
| CAAGAGTTCGGTAAACATGG+TGG | - | chr2.3:3827003-3827022 | None:intergenic | 45.0% | |
| CCGTTGATCCAATTCTTGAG+AGG | - | chr2.3:3827088-3827107 | None:intergenic | 45.0% | |
| CTTGAGAGGTTGGAAGTGAT+AGG | - | chr2.3:3827074-3827093 | None:intergenic | 45.0% | |
| GATGTCAAGAAAGGATGGTC+TGG | + | chr2.3:3828604-3828623 | MS.gene76146:CDS | 45.0% | |
| GCAACAGTAGGTTCCATCAA+TGG | - | chr2.3:3828085-3828104 | None:intergenic | 45.0% | |
| GCATCAGTAAAAGGTGGTGT+TGG | + | chr2.3:3829484-3829503 | MS.gene76146:CDS | 45.0% | |
| GGAAACTCTGCATTTGCACT+TGG | - | chr2.3:3830162-3830181 | None:intergenic | 45.0% | |
| GGCTAGGAAAAGATGGGTAT+TGG | + | chr2.3:3828149-3828168 | MS.gene76146:CDS | 45.0% | |
| GTAGGACCAATGAGATATGG+AGG | + | chr2.3:3827761-3827780 | MS.gene76146:intron | 45.0% | |
| GTGACAGCTTCTCATGAAGT+GGG | - | chr2.3:3829777-3829796 | None:intergenic | 45.0% | |
| TCAGCAACAATACTTCCAGG+TGG | + | chr2.3:3827941-3827960 | MS.gene76146:CDS | 45.0% | |
| TTAGGGACCCAACAACTTCT+TGG | + | chr2.3:3828128-3828147 | MS.gene76146:CDS | 45.0% | |
| TTATGAAGCCAGATAGCCCT+TGG | - | chr2.3:3828998-3829017 | None:intergenic | 45.0% | |
| ! | AAAGGTGGTGTTGGACCATT+TGG | + | chr2.3:3829493-3829512 | MS.gene76146:CDS | 45.0% |
| ! | AAGGGTGCATCAGTAAAAGG+TGG | + | chr2.3:3829478-3829497 | MS.gene76146:CDS | 45.0% |
| ! | GACCACATATGGGACTTTTG+TGG | + | chr2.3:3829744-3829763 | MS.gene76146:CDS | 45.0% |
| ! | TTTCCCCAAACAGCACCTTT+TGG | - | chr2.3:3827815-3827834 | None:intergenic | 45.0% |
| !! | AAAATTGCTGGTTTGCCACC+TGG | - | chr2.3:3827959-3827978 | None:intergenic | 45.0% |
| !! | AACATGGTGGGTAGCTTCAA+TGG | - | chr2.3:3826990-3827009 | None:intergenic | 45.0% |
| !! | ACATGGTGGGTAGCTTCAAT+GGG | - | chr2.3:3826989-3827008 | None:intergenic | 45.0% |
| !! | CATTCAGTGGTGGAGAGTTT+TGG | + | chr2.3:3830248-3830267 | MS.gene76146:CDS | 45.0% |
| !! | ATATTATATATTAAAATGAT+TGG | + | chr2.3:3827387-3827406 | MS.gene76146:intron | 5.0% |
| !!! | ATCATTTTAATATATAATAT+AGG | - | chr2.3:3827387-3827406 | None:intergenic | 5.0% |
| AATGGACATGCAGACCCCAA+TGG | + | chr2.3:3827237-3827256 | MS.gene76146:intron | 50.0% | |
| CAGCTGAAGGAACAGGAATG+TGG | + | chr2.3:3828272-3828291 | MS.gene76146:CDS | 50.0% | |
| CTGCACGTGCTTGCTTCTAA+AGG | + | chr2.3:3829517-3829536 | MS.gene76146:CDS | 50.0% | |
| GACCCAACAACTTCTTGGCT+AGG | + | chr2.3:3828133-3828152 | MS.gene76146:CDS | 50.0% | |
| GGCTCAGCAACAATACTTCC+AGG | + | chr2.3:3827938-3827957 | MS.gene76146:CDS | 50.0% | |
| GTGGGCCCATTCAGTATCAA+AGG | + | chr2.3:3827841-3827860 | MS.gene76146:CDS | 50.0% | |
| TATCTGACGGTTGAGATGGG+TGG | - | chr2.3:3827901-3827920 | None:intergenic | 50.0% | |
| TCATGTGCAGCGATCAAAGC+AGG | + | chr2.3:3829602-3829621 | MS.gene76146:CDS | 50.0% | |
| TGGCCAACCAAGGTGATCAA+GGG | + | chr2.3:3829085-3829104 | MS.gene76146:CDS | 50.0% | |
| TTCACCTCCCTTGATCACCT+TGG | - | chr2.3:3829095-3829114 | None:intergenic | 50.0% | |
| TTGGCCAACCAAGGTGATCA+AGG | + | chr2.3:3829084-3829103 | MS.gene76146:CDS | 50.0% | |
| ! | ACCTTGGTTGGCCAATTGAC+TGG | - | chr2.3:3829079-3829098 | None:intergenic | 50.0% |
| ! | CAGGGAAACAGTTGGTGCAA+TGG | + | chr2.3:3829020-3829039 | MS.gene76146:CDS | 50.0% |
| ! | CCTTGGTTGGCCAATTGACT+GGG | - | chr2.3:3829078-3829097 | None:intergenic | 50.0% |
| !! | GGGTGGATTGCATGATCCAA+TGG | - | chr2.3:3827884-3827903 | None:intergenic | 50.0% |
| !! | GTGGAGAGTTTTGGTGGAGA+AGG | + | chr2.3:3830257-3830276 | MS.gene76146:CDS | 50.0% |
| !! | TCAGTGGTGGAGAGTTTTGG+TGG | + | chr2.3:3830251-3830270 | MS.gene76146:CDS | 50.0% |
| CCAACCAAGGTGATCAAGGG+AGG | + | chr2.3:3829088-3829107 | MS.gene76146:CDS | 55.0% | |
| CCCAGTCAATTGGCCAACCA+AGG | + | chr2.3:3829075-3829094 | MS.gene76146:CDS | 55.0% | |
| CCTCCCTTGATCACCTTGGT+TGG | - | chr2.3:3829091-3829110 | None:intergenic | 55.0% | |
| GCAAGCACGTGCAGACCAAA+TGG | - | chr2.3:3829511-3829530 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 3826923 | 3830421 | 3826923 | ID=MS.gene76146 |
| chr2.3 | mRNA | 3826923 | 3830421 | 3826923 | ID=MS.gene76146.t1;Parent=MS.gene76146 |
| chr2.3 | exon | 3826923 | 3827106 | 3826923 | ID=MS.gene76146.t1.exon1;Parent=MS.gene76146.t1 |
| chr2.3 | CDS | 3826923 | 3827106 | 3826923 | ID=cds.MS.gene76146.t1;Parent=MS.gene76146.t1 |
| chr2.3 | exon | 3827250 | 3827258 | 3827250 | ID=MS.gene76146.t1.exon2;Parent=MS.gene76146.t1 |
| chr2.3 | CDS | 3827250 | 3827258 | 3827250 | ID=cds.MS.gene76146.t1;Parent=MS.gene76146.t1 |
| chr2.3 | exon | 3827765 | 3828633 | 3827765 | ID=MS.gene76146.t1.exon3;Parent=MS.gene76146.t1 |
| chr2.3 | CDS | 3827765 | 3828633 | 3827765 | ID=cds.MS.gene76146.t1;Parent=MS.gene76146.t1 |
| chr2.3 | exon | 3828989 | 3829147 | 3828989 | ID=MS.gene76146.t1.exon4;Parent=MS.gene76146.t1 |
| chr2.3 | CDS | 3828989 | 3829147 | 3828989 | ID=cds.MS.gene76146.t1;Parent=MS.gene76146.t1 |
| chr2.3 | exon | 3829388 | 3829623 | 3829388 | ID=MS.gene76146.t1.exon5;Parent=MS.gene76146.t1 |
| chr2.3 | CDS | 3829388 | 3829623 | 3829388 | ID=cds.MS.gene76146.t1;Parent=MS.gene76146.t1 |
| chr2.3 | exon | 3829717 | 3829807 | 3829717 | ID=MS.gene76146.t1.exon6;Parent=MS.gene76146.t1 |
| chr2.3 | CDS | 3829717 | 3829807 | 3829717 | ID=cds.MS.gene76146.t1;Parent=MS.gene76146.t1 |
| chr2.3 | exon | 3830242 | 3830421 | 3830242 | ID=MS.gene76146.t1.exon7;Parent=MS.gene76146.t1 |
| chr2.3 | CDS | 3830242 | 3830421 | 3830242 | ID=cds.MS.gene76146.t1;Parent=MS.gene76146.t1 |
| Gene Sequence |
| Protein sequence |
