AlfalfaGEDB | MS.gene35440

M. sativa cultivar XinJiangDaYe / MS.gene35440

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35440.t1	XP_003596861.1	89.3	234	23	1	1	232	1	234	3.40E-112	414.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35440.t1	Q9XIN8	42.8	243	116	5	5	230	12	248	1.2e-49	198.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35440.t1	G7IHH4	89.3	234	23	1	1	232	1	234	2.4e-112	414.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050363	MS.gene35440	0.82897	6.68E-55	-1.69E-46
MS.gene050380	MS.gene35440	0.803895	2.80E-49	-1.69E-46
MS.gene050381	MS.gene35440	0.856792	2.53E-62	-1.69E-46
MS.gene050868	MS.gene35440	-0.804089	2.55E-49	-1.69E-46
MS.gene050871	MS.gene35440	-0.805566	1.25E-49	-1.69E-46
MS.gene051127	MS.gene35440	0.830862	2.31E-55	-1.69E-46
MS.gene051138	MS.gene35440	0.807558	4.77E-50	-1.69E-46
MS.gene051946	MS.gene35440	0.845914	3.02E-59	-1.69E-46
MS.gene052083	MS.gene35440	0.839525	1.50E-57	-1.69E-46
MS.gene053420	MS.gene35440	0.83144	1.67E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35440.t1	MTR_2g086920	92.735	234	15	1	1	232	1	234	1.02e-148	417
MS.gene35440.t1	MTR_4g052460	54.274	234	95	3	8	230	24	256	6.08e-80	243
MS.gene35440.t1	MTR_1g058490	42.857	224	121	4	3	224	14	232	4.17e-56	182
MS.gene35440.t1	MTR_7g105320	41.453	234	129	4	3	230	15	246	8.34e-49	163
MS.gene35440.t1	MTR_3g466350	39.286	224	117	9	11	220	12	230	4.36e-37	131
MS.gene35440.t1	MTR_8g021080	37.229	231	127	9	5	227	4	224	5.72e-34	123
MS.gene35440.t1	MTR_3g466300	38.000	200	96	8	5	199	6	182	2.69e-29	110
MS.gene35440.t1	MTR_3g466280	35.217	230	127	7	3	226	4	217	5.76e-29	110
MS.gene35440.t1	MTR_3g466330	39.326	178	81	8	7	178	8	164	3.22e-25	99.4
MS.gene35440.t1	MTR_8g022730	32.645	242	125	10	10	227	9	236	2.66e-22	92.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35440.t1	AT2G27310	41.975	243	118	5	5	230	12	248	3.28e-63	200
MS.gene35440.t1	AT2G36090	42.795	229	108	5	5	230	17	225	1.31e-58	188
MS.gene35440.t1	AT3G44326	45.327	214	99	4	5	209	21	225	2.99e-58	188

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Find 85 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCATCACCTCCACA+TGG	0.679611	2.1:-15428662	MS.gene35440:CDS
AACAAAACGACGTCGTTGAA+TGG	0.392205	2.1:-15428338	MS.gene35440:CDS
AACAAAATTTGAGTCTAAGT+TGG	0.371445	2.1:-15428311	MS.gene35440:CDS
AAGATGGAGCGGTGAGAGGA+TGG	0.398739	2.1:+15428594	None:intergenic
AATGGGAATGGTGCAGTGTA+TGG	0.510270	2.1:-15428178	MS.gene35440:CDS
AATGGTGCAGTGTATGGTGA+AGG	0.682635	2.1:-15428172	MS.gene35440:CDS
ACGAATGGAGGGGAAGGAGT+CGG	0.591144	2.1:+15428569	None:intergenic
ACGTGCTGTGGGAAAGTGGG+GGG	0.566822	2.1:-15428147	MS.gene35440:CDS
ACTGCGGAGACTAATTCCTT+CGG	0.557275	2.1:+15428498	None:intergenic
AGAGGTGGTGTTCGGTGCAG+AGG	0.592742	2.1:+15428688	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATGGAGATGAATAACGAA+TGG	+	chr2.1:15428060-15428079	None:intergenic	35.0%
CAATGTCTTCTAACTGTTAC+CGG	+	chr2.1:15428377-15428396	None:intergenic	35.0%
CTAAGAACAGAGACACATAA+AGG	-	chr2.1:15428176-15428195	MS.gene35440:CDS	35.0%
TCGTTATTCATCTCCATCTT+CGG	-	chr2.1:15428061-15428080	MS.gene35440:intron	35.0%
TTAGTATGGAGGATATGGAT+GGG	-	chr2.1:15428513-15428532	MS.gene35440:CDS	35.0%
TTCGGATACTTCATCTTCAT+CGG	-	chr2.1:15428079-15428098	MS.gene35440:intron	35.0%
TTTAGTATGGAGGATATGGA+TGG	-	chr2.1:15428512-15428531	MS.gene35440:CDS	35.0%
AAAACATCATCACCTCCACA+TGG	-	chr2.1:15427949-15427968	MS.gene35440:intron	40.0%
AACAAAACGACGTCGTTGAA+TGG	-	chr2.1:15428273-15428292	MS.gene35440:CDS	40.0%
AAGAAGAGGTTTGAGGAGTT+TGG	-	chr2.1:15428623-15428642	MS.gene35440:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	15427810	15428823	15427810	ID=MS.gene35440
chr2.1	mRNA	15427810	15428823	15427810	ID=MS.gene35440.t1;Parent=MS.gene35440
chr2.1	exon	15428128	15428823	15428128	ID=MS.gene35440.t1.exon1;Parent=MS.gene35440.t1
chr2.1	CDS	15428128	15428823	15428128	ID=cds.MS.gene35440.t1;Parent=MS.gene35440.t1
chr2.1	exon	15427810	15427821	15427810	ID=MS.gene35440.t1.exon2;Parent=MS.gene35440.t1
chr2.1	CDS	15427810	15427821	15427810	ID=cds.MS.gene35440.t1;Parent=MS.gene35440.t1

Gene Sequence

>MS.gene35440

ATGGACTCACCCATCACCACCATCCACCCCGACATACTCCAATCTCACATCCTCACCAGACTCGACGGCACATCACTCACCTCCGCCTCCTCCACCGCCACCCACCTCCACAACCTCTGCACCGAACACCACCTCTGGCAAAACATCATCACCTCCACATGGCCATCTCTCAATAACCCCCTCGCCACGTCACTCATCTCCACCTTCCCATCCTCTCACCGCTCCATCTTCTCCGACTCCTTCCCCTCCATTCGTTATTCATCTCCATCTTCGGATACTTCATCTTCATCGGTATTATCTGCTCCGAAGGAATTAGTCTCCGCAGTTGATATATATTACAAGGGCAAACCTGTCTTTTCAAAGCTTCTAAGAACAGAGACACATAAAGGATGGTTTCTTTGTTCACCTCTATGGATTGAAATTCTAGAACCAAATGAAACTATTGAAACAAATATTAAGTTTGAACAAAACGACGTCGTTGAATGGTTAGAACAAAATTTGAGTCTAAGTTGGATTATTATTGAACCGACACGTAAGCGTTCGGTTAACCTCTCAAGCCGGTTACCGGTAACAGTTAGAAGACATTGGCTCACGGGAGAATTAGAGGTTTTATACGGTACGGTAATGGGAATGGTGCAGTGTATGGTGAAGGTCACGTGCTGTGGGAAAGTGGGGGGTGAGATGCACGTGAGTGGGGTGAGTTTTAGTATGGAGGATATGGATGGGAGACATTTGATTGGGAGGGATAGTTTGGGGATTTTGGTTGGGGCTATGGAGAAGGGTGAGAGGAGGAAAGTGGATGTTGAGAGAGAGAAGAAGAGGTTTGAGGAGTTTGGTGGGAGGAAGAGAGAGAGAAGAGAGAGAAAGTTGAGGAGAGAGAGGGTTATGGATATGATTATTATGGTGATTGCTATTGTTGTTTTTGCTTTTCTTTTTCGATTTTTGAGGTTTTGGGTTTAATACATCGATCAATTAAGTTTACTTTTTTTTTTTACCTTGTAGGGATGGGGATAG

Protein sequence

>MS.gene35440.t1

MDSPITTIHPDILQSHILTRLDGTSLTSASSTATHLHNLCTEHHLWQNIITSTWPSLNNPLATSLISTFPSSHRSIFSDSFPSIRYSSPSSDTSSSSVLSAPKELVSAVDIYYKGKPVFSKLLRTETHKGWFLCSPLWIEILEPNETIETNIKFEQNDVVEWLEQNLSLSWIIIEPTRKRSVNLSSRLPVTVRRHWLTGELEVLYGTVMGMVQCMVKVTCCGKVGGEMHVSGGWG