Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35440.t1 | XP_003596861.1 | 89.3 | 234 | 23 | 1 | 1 | 232 | 1 | 234 | 3.40E-112 | 414.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35440.t1 | Q9XIN8 | 42.8 | 243 | 116 | 5 | 5 | 230 | 12 | 248 | 1.2e-49 | 198.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35440.t1 | G7IHH4 | 89.3 | 234 | 23 | 1 | 1 | 232 | 1 | 234 | 2.4e-112 | 414.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050363 | MS.gene35440 | 0.82897 | 6.68E-55 | -1.69E-46 |
| MS.gene050380 | MS.gene35440 | 0.803895 | 2.80E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene35440 | 0.856792 | 2.53E-62 | -1.69E-46 |
| MS.gene050868 | MS.gene35440 | -0.804089 | 2.55E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene35440 | -0.805566 | 1.25E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene35440 | 0.830862 | 2.31E-55 | -1.69E-46 |
| MS.gene051138 | MS.gene35440 | 0.807558 | 4.77E-50 | -1.69E-46 |
| MS.gene051946 | MS.gene35440 | 0.845914 | 3.02E-59 | -1.69E-46 |
| MS.gene052083 | MS.gene35440 | 0.839525 | 1.50E-57 | -1.69E-46 |
| MS.gene053420 | MS.gene35440 | 0.83144 | 1.67E-55 | -1.69E-46 |
| MS.gene053488 | MS.gene35440 | 0.815593 | 8.54E-52 | -1.69E-46 |
| MS.gene053561 | MS.gene35440 | 0.837878 | 4.01E-57 | -1.69E-46 |
| MS.gene054708 | MS.gene35440 | 0.814518 | 1.48E-51 | -1.69E-46 |
| MS.gene055124 | MS.gene35440 | 0.820203 | 7.77E-53 | -1.69E-46 |
| MS.gene055139 | MS.gene35440 | 0.803142 | 4.01E-49 | -1.69E-46 |
| MS.gene055154 | MS.gene35440 | 0.815036 | 1.14E-51 | -1.69E-46 |
| MS.gene055202 | MS.gene35440 | 0.87337 | 1.55E-67 | -1.69E-46 |
| MS.gene056310 | MS.gene35440 | 0.820188 | 7.83E-53 | -1.69E-46 |
| MS.gene056311 | MS.gene35440 | 0.808762 | 2.64E-50 | -1.69E-46 |
| MS.gene056313 | MS.gene35440 | 0.824626 | 7.29E-54 | -1.69E-46 |
| MS.gene056880 | MS.gene35440 | 0.808084 | 3.69E-50 | -1.69E-46 |
| MS.gene057014 | MS.gene35440 | 0.831646 | 1.48E-55 | -1.69E-46 |
| MS.gene058099 | MS.gene35440 | 0.80037 | 1.49E-48 | -1.69E-46 |
| MS.gene058171 | MS.gene35440 | 0.82917 | 5.98E-55 | -1.69E-46 |
| MS.gene058173 | MS.gene35440 | 0.818444 | 1.95E-52 | -1.69E-46 |
| MS.gene058175 | MS.gene35440 | 0.827992 | 1.15E-54 | -1.69E-46 |
| MS.gene059690 | MS.gene35440 | 0.824345 | 8.49E-54 | -1.69E-46 |
| MS.gene059691 | MS.gene35440 | 0.815767 | 7.81E-52 | -1.69E-46 |
| MS.gene059694 | MS.gene35440 | 0.833332 | 5.67E-56 | -1.69E-46 |
| MS.gene059697 | MS.gene35440 | 0.831885 | 1.30E-55 | -1.69E-46 |
| MS.gene059916 | MS.gene35440 | 0.81477 | 1.30E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35440.t1 | MTR_2g086920 | 92.735 | 234 | 15 | 1 | 1 | 232 | 1 | 234 | 1.02e-148 | 417 |
| MS.gene35440.t1 | MTR_4g052460 | 54.274 | 234 | 95 | 3 | 8 | 230 | 24 | 256 | 6.08e-80 | 243 |
| MS.gene35440.t1 | MTR_1g058490 | 42.857 | 224 | 121 | 4 | 3 | 224 | 14 | 232 | 4.17e-56 | 182 |
| MS.gene35440.t1 | MTR_7g105320 | 41.453 | 234 | 129 | 4 | 3 | 230 | 15 | 246 | 8.34e-49 | 163 |
| MS.gene35440.t1 | MTR_3g466350 | 39.286 | 224 | 117 | 9 | 11 | 220 | 12 | 230 | 4.36e-37 | 131 |
| MS.gene35440.t1 | MTR_8g021080 | 37.229 | 231 | 127 | 9 | 5 | 227 | 4 | 224 | 5.72e-34 | 123 |
| MS.gene35440.t1 | MTR_3g466300 | 38.000 | 200 | 96 | 8 | 5 | 199 | 6 | 182 | 2.69e-29 | 110 |
| MS.gene35440.t1 | MTR_3g466280 | 35.217 | 230 | 127 | 7 | 3 | 226 | 4 | 217 | 5.76e-29 | 110 |
| MS.gene35440.t1 | MTR_3g466330 | 39.326 | 178 | 81 | 8 | 7 | 178 | 8 | 164 | 3.22e-25 | 99.4 |
| MS.gene35440.t1 | MTR_8g022730 | 32.645 | 242 | 125 | 10 | 10 | 227 | 9 | 236 | 2.66e-22 | 92.8 |
| MS.gene35440.t1 | MTR_1g072360 | 28.195 | 266 | 136 | 11 | 5 | 218 | 9 | 271 | 6.66e-21 | 90.1 |
| MS.gene35440.t1 | MTR_1g072360 | 28.195 | 266 | 136 | 11 | 5 | 218 | 29 | 291 | 1.10e-20 | 89.7 |
| MS.gene35440.t1 | MTR_1g060460 | 35.252 | 139 | 67 | 4 | 5 | 143 | 42 | 157 | 6.99e-17 | 75.5 |
| MS.gene35440.t1 | MTR_8g021090 | 41.860 | 86 | 44 | 2 | 27 | 111 | 4 | 84 | 1.06e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35440.t1 | AT2G27310 | 41.975 | 243 | 118 | 5 | 5 | 230 | 12 | 248 | 3.28e-63 | 200 |
| MS.gene35440.t1 | AT2G36090 | 42.795 | 229 | 108 | 5 | 5 | 230 | 17 | 225 | 1.31e-58 | 188 |
| MS.gene35440.t1 | AT3G44326 | 45.327 | 214 | 99 | 4 | 5 | 209 | 21 | 225 | 2.99e-58 | 188 |
Find 85 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCTTTGTTCACCTCTA+TGG | 0.209691 | 2.1:-15428410 | MS.gene35440:CDS |
| GTGGAGGTGGGTGGCGGTGG+AGG | 0.266422 | 2.1:+15428713 | None:intergenic |
| GTTGTGGAGGTGGGTGGCGG+TGG | 0.294928 | 2.1:+15428710 | None:intergenic |
| GTGGGTGGCGGTGGAGGAGG+CGG | 0.298613 | 2.1:+15428719 | None:intergenic |
| GAGGTGGGTGGCGGTGGAGG+AGG | 0.325460 | 2.1:+15428716 | None:intergenic |
| GTCGGGGTGGATGGTGGTGA+TGG | 0.328835 | 2.1:+15428791 | None:intergenic |
| GGTGGCGGTGGAGGAGGCGG+AGG | 0.368640 | 2.1:+15428722 | None:intergenic |
| CAATGTCTTCTAACTGTTAC+CGG | 0.370190 | 2.1:+15428237 | None:intergenic |
| AACAAAATTTGAGTCTAAGT+TGG | 0.371445 | 2.1:-15428311 | MS.gene35440:CDS |
| TAACCTCTCAAGCCGGTTAC+CGG | 0.373405 | 2.1:-15428256 | MS.gene35440:CDS |
| TTCTAACTGTTACCGGTAAC+CGG | 0.374924 | 2.1:+15428244 | None:intergenic |
| TTGGCTCACGGGAGAATTAG+AGG | 0.387655 | 2.1:-15428217 | MS.gene35440:CDS |
| TTTGTTTCAATAGTTTCATT+TGG | 0.390184 | 2.1:+15428372 | None:intergenic |
| AACAAAACGACGTCGTTGAA+TGG | 0.392205 | 2.1:-15428338 | MS.gene35440:CDS |
| TCGTTATTCATCTCCATCTT+CGG | 0.396862 | 2.1:-15428550 | MS.gene35440:CDS |
| AAGATGGAGCGGTGAGAGGA+TGG | 0.398739 | 2.1:+15428594 | None:intergenic |
| CGGTGCAGAGGTTGTGGAGG+TGG | 0.405759 | 2.1:+15428700 | None:intergenic |
| GGGGAAGGAGTCGGAGAAGA+TGG | 0.414990 | 2.1:+15428578 | None:intergenic |
| ATGTGAGATTGGAGTATGTC+GGG | 0.422536 | 2.1:+15428774 | None:intergenic |
| GAGTGATGTGCCGTCGAGTC+TGG | 0.428850 | 2.1:+15428746 | None:intergenic |
| TTGGAGTATGTCGGGGTGGA+TGG | 0.428920 | 2.1:+15428782 | None:intergenic |
| CGCAGTTGATATATATTACA+AGG | 0.430047 | 2.1:-15428481 | MS.gene35440:CDS |
| CTTAGAAGCTTTGAAAAGAC+AGG | 0.433376 | 2.1:+15428453 | None:intergenic |
| GGTGCAGAGGTTGTGGAGGT+GGG | 0.445119 | 2.1:+15428701 | None:intergenic |
| GTCACGTGCTGTGGGAAAGT+GGG | 0.450847 | 2.1:-15428150 | MS.gene35440:CDS |
| GGGGTGAGATGCACGTGAGT+GGG | 0.452919 | 2.1:-15428128 | MS.gene35440:CDS |
| GGAGATGAGTGACGTGGCGA+GGG | 0.466985 | 2.1:+15428623 | None:intergenic |
| GGTCACGTGCTGTGGGAAAG+TGG | 0.470168 | 2.1:-15428151 | MS.gene35440:CDS |
| TCGGGGTGGATGGTGGTGAT+GGG | 0.477553 | 2.1:+15428792 | None:intergenic |
| CTAAGAACAGAGACACATAA+AGG | 0.480789 | 2.1:-15428435 | MS.gene35440:CDS |
| GCGGTGAGAGGATGGGAAGG+TGG | 0.480907 | 2.1:+15428602 | None:intergenic |
| GAGGTTGTGGAGGTGGGTGG+CGG | 0.481372 | 2.1:+15428707 | None:intergenic |
| TCTGCACCGAACACCACCTC+TGG | 0.489290 | 2.1:-15428686 | MS.gene35440:CDS |
| AGATGGAGCGGTGAGAGGAT+GGG | 0.490852 | 2.1:+15428595 | None:intergenic |
| GAGTATGTCGGGGTGGATGG+TGG | 0.501105 | 2.1:+15428785 | None:intergenic |
| TCACGTGCTGTGGGAAAGTG+GGG | 0.501322 | 2.1:-15428149 | MS.gene35440:CDS |
| TGAACCGACACGTAAGCGTT+CGG | 0.506204 | 2.1:-15428280 | MS.gene35440:CDS |
| AATGGGAATGGTGCAGTGTA+TGG | 0.510270 | 2.1:-15428178 | MS.gene35440:CDS |
| TTCGGATACTTCATCTTCAT+CGG | 0.510437 | 2.1:-15428532 | MS.gene35440:CDS |
| TGGAGATGAGTGACGTGGCG+AGG | 0.514002 | 2.1:+15428622 | None:intergenic |
| GTCTGGTGAGGATGTGAGAT+TGG | 0.517437 | 2.1:+15428763 | None:intergenic |
| GGTGTTCGGTGCAGAGGTTG+TGG | 0.519995 | 2.1:+15428694 | None:intergenic |
| ATACGGTACGGTAATGGGAA+TGG | 0.540745 | 2.1:-15428190 | MS.gene35440:CDS |
| TGGAGATGAATAACGAATGG+AGG | 0.541728 | 2.1:+15428557 | None:intergenic |
| GGGTGAGATGCACGTGAGTG+GGG | 0.543764 | 2.1:-15428127 | MS.gene35440:intron |
| GTTAGAAGACATTGGCTCAC+GGG | 0.543960 | 2.1:-15428228 | MS.gene35440:CDS |
| GAGATGAGTGACGTGGCGAG+GGG | 0.547358 | 2.1:+15428624 | None:intergenic |
| TCTAGAATTTCAATCCATAG+AGG | 0.551380 | 2.1:+15428396 | None:intergenic |
| GGAGCGGTGAGAGGATGGGA+AGG | 0.552602 | 2.1:+15428599 | None:intergenic |
| GGAGATGAATAACGAATGGA+GGG | 0.557173 | 2.1:+15428558 | None:intergenic |
| ACTGCGGAGACTAATTCCTT+CGG | 0.557275 | 2.1:+15428498 | None:intergenic |
| GCAGAGGTTGTGGAGGTGGG+TGG | 0.557699 | 2.1:+15428704 | None:intergenic |
| TGAATAACGAATGGAGGGGA+AGG | 0.560459 | 2.1:+15428563 | None:intergenic |
| GGAGAAGATGGAGCGGTGAG+AGG | 0.563825 | 2.1:+15428590 | None:intergenic |
| ACGTGCTGTGGGAAAGTGGG+GGG | 0.566822 | 2.1:-15428147 | MS.gene35440:CDS |
| GATGTGAGATTGGAGTATGT+CGG | 0.569404 | 2.1:+15428773 | None:intergenic |
| ATCGGTATTATCTGCTCCGA+AGG | 0.570584 | 2.1:-15428514 | MS.gene35440:CDS |
| ATGGTGAAGGTCACGTGCTG+TGG | 0.570650 | 2.1:-15428159 | MS.gene35440:CDS |
| GAAGATGAAGTATCCGAAGA+TGG | 0.580115 | 2.1:+15428537 | None:intergenic |
| CACGTGCTGTGGGAAAGTGG+GGG | 0.587192 | 2.1:-15428148 | MS.gene35440:CDS |
| ACGAATGGAGGGGAAGGAGT+CGG | 0.591144 | 2.1:+15428569 | None:intergenic |
| AGAGGTGGTGTTCGGTGCAG+AGG | 0.592742 | 2.1:+15428688 | None:intergenic |
| TTACCGGTAACCGGCTTGAG+AGG | 0.595859 | 2.1:+15428253 | None:intergenic |
| AGATGGAGATGAATAACGAA+TGG | 0.600147 | 2.1:+15428554 | None:intergenic |
| CGGTAACAGTTAGAAGACAT+TGG | 0.603127 | 2.1:-15428236 | MS.gene35440:CDS |
| GTTCGGTTAACCTCTCAAGC+CGG | 0.609525 | 2.1:-15428263 | MS.gene35440:CDS |
| GAACAGAGACACATAAAGGA+TGG | 0.621239 | 2.1:-15428431 | MS.gene35440:CDS |
| TTAACCGAACGCTTACGTGT+CGG | 0.623740 | 2.1:+15428276 | None:intergenic |
| AGTTAGAAGACATTGGCTCA+CGG | 0.630213 | 2.1:-15428229 | MS.gene35440:CDS |
| TGGTGAAGGTCACGTGCTGT+GGG | 0.633173 | 2.1:-15428158 | MS.gene35440:CDS |
| CACATCCTCACCAGACTCGA+CGG | 0.634369 | 2.1:-15428756 | MS.gene35440:CDS |
| GTTCGGTGCAGAGGTTGTGG+AGG | 0.665684 | 2.1:+15428697 | None:intergenic |
| ATGTGCCGTCGAGTCTGGTG+AGG | 0.670423 | 2.1:+15428751 | None:intergenic |
| AGGAGTCGGAGAAGATGGAG+CGG | 0.672482 | 2.1:+15428583 | None:intergenic |
| TGTGAGATTGGAGTATGTCG+GGG | 0.676582 | 2.1:+15428775 | None:intergenic |
| AAAACATCATCACCTCCACA+TGG | 0.679611 | 2.1:-15428662 | MS.gene35440:CDS |
| AATGGTGCAGTGTATGGTGA+AGG | 0.682635 | 2.1:-15428172 | MS.gene35440:CDS |
| GTTATTGAGAGATGGCCATG+TGG | 0.683745 | 2.1:+15428647 | None:intergenic |
| GCAGTTGATATATATTACAA+GGG | 0.684365 | 2.1:-15428480 | MS.gene35440:CDS |
| AGATGAGTGACGTGGCGAGG+GGG | 0.686226 | 2.1:+15428625 | None:intergenic |
| GAGATTGGAGTATGTCGGGG+TGG | 0.691570 | 2.1:+15428778 | None:intergenic |
| CTTGTAATATATATCAACTG+CGG | 0.697614 | 2.1:+15428482 | None:intergenic |
| ATTGAGAGATGGCCATGTGG+AGG | 0.698788 | 2.1:+15428650 | None:intergenic |
| GAGATGAATAACGAATGGAG+GGG | 0.734570 | 2.1:+15428559 | None:intergenic |
| GAAGGTGGAGATGAGTGACG+TGG | 0.796320 | 2.1:+15428617 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTTCAATAGTTTCATT+TGG | + | chr2.1:15428242-15428261 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTTTTTACCTTGT+AGG | - | chr2.1:15428790-15428809 | MS.gene35440:CDS | 20.0% |
| !!! | CTTTTTTTTTTTACCTTGTA+GGG | - | chr2.1:15428791-15428810 | MS.gene35440:CDS | 20.0% |
| ! | AACAAAATTTGAGTCTAAGT+TGG | - | chr2.1:15428300-15428319 | MS.gene35440:CDS | 25.0% |
| ! | CTTGTAATATATATCAACTG+CGG | + | chr2.1:15428132-15428151 | None:intergenic | 25.0% |
| ! | GGTTATGGATATGATTATTA+TGG | - | chr2.1:15428691-15428710 | MS.gene35440:CDS | 25.0% |
| !! | GCAGTTGATATATATTACAA+GGG | - | chr2.1:15428131-15428150 | MS.gene35440:CDS | 25.0% |
| !!! | CTTTTCTTTTTCGATTTTTG+AGG | - | chr2.1:15428735-15428754 | MS.gene35440:CDS | 25.0% |
| !!! | TTTTCGATTTTTGAGGTTTT+GGG | - | chr2.1:15428742-15428761 | MS.gene35440:CDS | 25.0% |
| !!! | TTTTTCGATTTTTGAGGTTT+TGG | - | chr2.1:15428741-15428760 | MS.gene35440:CDS | 25.0% |
| ! | CGCAGTTGATATATATTACA+AGG | - | chr2.1:15428130-15428149 | MS.gene35440:CDS | 30.0% |
| ! | TCTAGAATTTCAATCCATAG+AGG | + | chr2.1:15428218-15428237 | None:intergenic | 30.0% |
| !! | ATTAGAGGTTTTATACGGTA+CGG | - | chr2.1:15428409-15428428 | MS.gene35440:CDS | 30.0% |
| !! | GGAGAATTAGAGGTTTTATA+CGG | - | chr2.1:15428404-15428423 | MS.gene35440:CDS | 30.0% |
| !!! | TTTTTTTACCTTGTAGGGAT+GGG | - | chr2.1:15428796-15428815 | MS.gene35440:CDS | 30.0% |
| !!! | TTTTTTTTACCTTGTAGGGA+TGG | - | chr2.1:15428795-15428814 | MS.gene35440:CDS | 30.0% |
| AGATGGAGATGAATAACGAA+TGG | + | chr2.1:15428060-15428079 | None:intergenic | 35.0% | |
| CAATGTCTTCTAACTGTTAC+CGG | + | chr2.1:15428377-15428396 | None:intergenic | 35.0% | |
| CTAAGAACAGAGACACATAA+AGG | - | chr2.1:15428176-15428195 | MS.gene35440:CDS | 35.0% | |
| TCGTTATTCATCTCCATCTT+CGG | - | chr2.1:15428061-15428080 | MS.gene35440:intron | 35.0% | |
| TTAGTATGGAGGATATGGAT+GGG | - | chr2.1:15428513-15428532 | MS.gene35440:CDS | 35.0% | |
| TTCGGATACTTCATCTTCAT+CGG | - | chr2.1:15428079-15428098 | MS.gene35440:intron | 35.0% | |
| TTTAGTATGGAGGATATGGA+TGG | - | chr2.1:15428512-15428531 | MS.gene35440:CDS | 35.0% | |
| ! | GTTTTATACGGTACGGTAAT+GGG | - | chr2.1:15428416-15428435 | MS.gene35440:CDS | 35.0% |
| !! | CTTAGAAGCTTTGAAAAGAC+AGG | + | chr2.1:15428161-15428180 | None:intergenic | 35.0% |
| !! | GAGTTTTAGTATGGAGGATA+TGG | - | chr2.1:15428508-15428527 | MS.gene35440:CDS | 35.0% |
| !!! | ATAGTTTGGGGATTTTGGTT+GGG | - | chr2.1:15428555-15428574 | MS.gene35440:CDS | 35.0% |
| !!! | TTTTTTACCTTGTAGGGATG+GGG | - | chr2.1:15428797-15428816 | MS.gene35440:CDS | 35.0% |
| AAAACATCATCACCTCCACA+TGG | - | chr2.1:15427949-15427968 | MS.gene35440:intron | 40.0% | |
| AACAAAACGACGTCGTTGAA+TGG | - | chr2.1:15428273-15428292 | MS.gene35440:CDS | 40.0% | |
| AAGAAGAGGTTTGAGGAGTT+TGG | - | chr2.1:15428623-15428642 | MS.gene35440:CDS | 40.0% | |
| AGAGAAGAGAGAGAAAGTTG+AGG | - | chr2.1:15428660-15428679 | MS.gene35440:CDS | 40.0% | |
| ATGGATGGGAGACATTTGAT+TGG | - | chr2.1:15428527-15428546 | MS.gene35440:CDS | 40.0% | |
| ATGTGAGATTGGAGTATGTC+GGG | + | chr2.1:15427840-15427859 | None:intergenic | 40.0% | |
| ATGTTGAGAGAGAGAAGAAG+AGG | - | chr2.1:15428609-15428628 | MS.gene35440:CDS | 40.0% | |
| CGGTAACAGTTAGAAGACAT+TGG | - | chr2.1:15428375-15428394 | MS.gene35440:CDS | 40.0% | |
| GAACAGAGACACATAAAGGA+TGG | - | chr2.1:15428180-15428199 | MS.gene35440:CDS | 40.0% | |
| GAGATGAATAACGAATGGAG+GGG | + | chr2.1:15428055-15428074 | None:intergenic | 40.0% | |
| GATGTGAGATTGGAGTATGT+CGG | + | chr2.1:15427841-15427860 | None:intergenic | 40.0% | |
| GGAGATGAATAACGAATGGA+GGG | + | chr2.1:15428056-15428075 | None:intergenic | 40.0% | |
| GGTTTCTTTGTTCACCTCTA+TGG | - | chr2.1:15428201-15428220 | MS.gene35440:CDS | 40.0% | |
| TGGAGATGAATAACGAATGG+AGG | + | chr2.1:15428057-15428076 | None:intergenic | 40.0% | |
| TGGATGGGAGACATTTGATT+GGG | - | chr2.1:15428528-15428547 | MS.gene35440:CDS | 40.0% | |
| TTCTAACTGTTACCGGTAAC+CGG | + | chr2.1:15428370-15428389 | None:intergenic | 40.0% | |
| TTGATTGGGAGGGATAGTTT+GGG | - | chr2.1:15428542-15428561 | MS.gene35440:CDS | 40.0% | |
| TTTGATTGGGAGGGATAGTT+TGG | - | chr2.1:15428541-15428560 | MS.gene35440:CDS | 40.0% | |
| ! | GAAGATGAAGTATCCGAAGA+TGG | + | chr2.1:15428077-15428096 | None:intergenic | 40.0% |
| !! | AGTTAGAAGACATTGGCTCA+CGG | - | chr2.1:15428382-15428401 | MS.gene35440:CDS | 40.0% |
| !! | GATAGTTTGGGGATTTTGGT+TGG | - | chr2.1:15428554-15428573 | MS.gene35440:CDS | 40.0% |
| !! | GGTTTTATACGGTACGGTAA+TGG | - | chr2.1:15428415-15428434 | MS.gene35440:CDS | 40.0% |
| !!! | TAGTTTGGGGATTTTGGTTG+GGG | - | chr2.1:15428556-15428575 | MS.gene35440:CDS | 40.0% |
| AAGAGGTTTGAGGAGTTTGG+TGG | - | chr2.1:15428626-15428645 | MS.gene35440:CDS | 45.0% | |
| AATGGGAATGGTGCAGTGTA+TGG | - | chr2.1:15428433-15428452 | MS.gene35440:CDS | 45.0% | |
| AATGGTGCAGTGTATGGTGA+AGG | - | chr2.1:15428439-15428458 | MS.gene35440:CDS | 45.0% | |
| ACTGCGGAGACTAATTCCTT+CGG | + | chr2.1:15428116-15428135 | None:intergenic | 45.0% | |
| AGAGAAAGTTGAGGAGAGAG+AGG | - | chr2.1:15428669-15428688 | MS.gene35440:CDS | 45.0% | |
| AGAGGTTTGAGGAGTTTGGT+GGG | - | chr2.1:15428627-15428646 | MS.gene35440:CDS | 45.0% | |
| ATCGGTATTATCTGCTCCGA+AGG | - | chr2.1:15428097-15428116 | MS.gene35440:intron | 45.0% | |
| ATGGGAGACATTTGATTGGG+AGG | - | chr2.1:15428531-15428550 | MS.gene35440:CDS | 45.0% | |
| GAGAAAGTTGAGGAGAGAGA+GGG | - | chr2.1:15428670-15428689 | MS.gene35440:CDS | 45.0% | |
| GAGAGAGAAGAAGAGGTTTG+AGG | - | chr2.1:15428616-15428635 | MS.gene35440:CDS | 45.0% | |
| GTTATTGAGAGATGGCCATG+TGG | + | chr2.1:15427967-15427986 | None:intergenic | 45.0% | |
| TGAATAACGAATGGAGGGGA+AGG | + | chr2.1:15428051-15428070 | None:intergenic | 45.0% | |
| TGATTGGGAGGGATAGTTTG+GGG | - | chr2.1:15428543-15428562 | MS.gene35440:CDS | 45.0% | |
| TGGGAGACATTTGATTGGGA+GGG | - | chr2.1:15428532-15428551 | MS.gene35440:CDS | 45.0% | |
| TGTGAGATTGGAGTATGTCG+GGG | + | chr2.1:15427839-15427858 | None:intergenic | 45.0% | |
| TTAACCGAACGCTTACGTGT+CGG | + | chr2.1:15428338-15428357 | None:intergenic | 45.0% | |
| ! | GAGGGATAGTTTGGGGATTT+TGG | - | chr2.1:15428550-15428569 | MS.gene35440:CDS | 45.0% |
| !! | AGGTGATGATGTTTTGCCAG+AGG | + | chr2.1:15427944-15427963 | None:intergenic | 45.0% |
| !! | ATACGGTACGGTAATGGGAA+TGG | - | chr2.1:15428421-15428440 | MS.gene35440:CDS | 45.0% |
| !! | GAGTGGGGTGAGTTTTAGTA+TGG | - | chr2.1:15428499-15428518 | MS.gene35440:CDS | 45.0% |
| !! | GTTAGAAGACATTGGCTCAC+GGG | - | chr2.1:15428383-15428402 | MS.gene35440:CDS | 45.0% |
| !! | TGATGATGTTTTGCCAGAGG+TGG | + | chr2.1:15427941-15427960 | None:intergenic | 45.0% |
| !! | TGGGGTGAGTTTTAGTATGG+AGG | - | chr2.1:15428502-15428521 | MS.gene35440:CDS | 45.0% |
| ATTGAGAGATGGCCATGTGG+AGG | + | chr2.1:15427964-15427983 | None:intergenic | 50.0% | |
| GTCTGGTGAGGATGTGAGAT+TGG | + | chr2.1:15427851-15427870 | None:intergenic | 50.0% | |
| GTTCGGTTAACCTCTCAAGC+CGG | - | chr2.1:15428348-15428367 | MS.gene35440:CDS | 50.0% | |
| GTTGAGGAGAGAGAGGGTTA+TGG | - | chr2.1:15428676-15428695 | MS.gene35440:CDS | 50.0% | |
| TAACCTCTCAAGCCGGTTAC+CGG | - | chr2.1:15428355-15428374 | MS.gene35440:CDS | 50.0% | |
| TGAACCGACACGTAAGCGTT+CGG | - | chr2.1:15428331-15428350 | MS.gene35440:CDS | 50.0% | |
| TTGGCTCACGGGAGAATTAG+AGG | - | chr2.1:15428394-15428413 | MS.gene35440:CDS | 50.0% | |
| TTGGTTGGGGCTATGGAGAA+GGG | - | chr2.1:15428569-15428588 | MS.gene35440:CDS | 50.0% | |
| TTTGGTTGGGGCTATGGAGA+AGG | - | chr2.1:15428568-15428587 | MS.gene35440:CDS | 50.0% | |
| ! | GTTTTGCCAGAGGTGGTGTT+CGG | + | chr2.1:15427934-15427953 | None:intergenic | 50.0% |
| AAGATGGAGCGGTGAGAGGA+TGG | + | chr2.1:15428020-15428039 | None:intergenic | 55.0% | |
| ACGAATGGAGGGGAAGGAGT+CGG | + | chr2.1:15428045-15428064 | None:intergenic | 55.0% | |
| AGATGGAGCGGTGAGAGGAT+GGG | + | chr2.1:15428019-15428038 | None:intergenic | 55.0% | |
| AGGAGTCGGAGAAGATGGAG+CGG | + | chr2.1:15428031-15428050 | None:intergenic | 55.0% | |
| ATGGTGAAGGTCACGTGCTG+TGG | - | chr2.1:15428452-15428471 | MS.gene35440:CDS | 55.0% | |
| CACATCCTCACCAGACTCGA+CGG | - | chr2.1:15427855-15427874 | MS.gene35440:intron | 55.0% | |
| CTATGGAGAAGGGTGAGAGG+AGG | - | chr2.1:15428579-15428598 | MS.gene35440:CDS | 55.0% | |
| GAAGGGTGAGAGGAGGAAAG+TGG | - | chr2.1:15428586-15428605 | MS.gene35440:CDS | 55.0% | |
| GAAGGTGGAGATGAGTGACG+TGG | + | chr2.1:15427997-15428016 | None:intergenic | 55.0% | |
| GAGATTGGAGTATGTCGGGG+TGG | + | chr2.1:15427836-15427855 | None:intergenic | 55.0% | |
| GCGAGGGGGTTATTGAGAGA+TGG | + | chr2.1:15427975-15427994 | None:intergenic | 55.0% | |
| GTCACGTGCTGTGGGAAAGT+GGG | - | chr2.1:15428461-15428480 | MS.gene35440:CDS | 55.0% | |
| TCACGTGCTGTGGGAAAGTG+GGG | - | chr2.1:15428462-15428481 | MS.gene35440:CDS | 55.0% | |
| TGGTGAAGGTCACGTGCTGT+GGG | - | chr2.1:15428453-15428472 | MS.gene35440:CDS | 55.0% | |
| TTGGAGTATGTCGGGGTGGA+TGG | + | chr2.1:15427832-15427851 | None:intergenic | 55.0% | |
| ! | GGTTTGAGGAGTTTGGTGGG+AGG | - | chr2.1:15428630-15428649 | MS.gene35440:CDS | 55.0% |
| !! | TTACCGGTAACCGGCTTGAG+AGG | + | chr2.1:15428361-15428380 | None:intergenic | 55.0% |
| !!! | GGGGATTTTGGTTGGGGCTA+TGG | - | chr2.1:15428562-15428581 | MS.gene35440:CDS | 55.0% |
| ACGTGCTGTGGGAAAGTGGG+GGG | - | chr2.1:15428464-15428483 | MS.gene35440:CDS | 60.0% | |
| AGATGAGTGACGTGGCGAGG+GGG | + | chr2.1:15427989-15428008 | None:intergenic | 60.0% | |
| ATGTGCCGTCGAGTCTGGTG+AGG | + | chr2.1:15427863-15427882 | None:intergenic | 60.0% | |
| CACGTGCTGTGGGAAAGTGG+GGG | - | chr2.1:15428463-15428482 | MS.gene35440:CDS | 60.0% | |
| GAGATGAGTGACGTGGCGAG+GGG | + | chr2.1:15427990-15428009 | None:intergenic | 60.0% | |
| GAGTATGTCGGGGTGGATGG+TGG | + | chr2.1:15427829-15427848 | None:intergenic | 60.0% | |
| GAGTGATGTGCCGTCGAGTC+TGG | + | chr2.1:15427868-15427887 | None:intergenic | 60.0% | |
| GGAGAAGATGGAGCGGTGAG+AGG | + | chr2.1:15428024-15428043 | None:intergenic | 60.0% | |
| GGAGATGAGTGACGTGGCGA+GGG | + | chr2.1:15427991-15428010 | None:intergenic | 60.0% | |
| GGGCTATGGAGAAGGGTGAG+AGG | - | chr2.1:15428576-15428595 | MS.gene35440:CDS | 60.0% | |
| GGGGAAGGAGTCGGAGAAGA+TGG | + | chr2.1:15428036-15428055 | None:intergenic | 60.0% | |
| GGGGTGAGATGCACGTGAGT+GGG | - | chr2.1:15428483-15428502 | MS.gene35440:CDS | 60.0% | |
| GGGTGAGATGCACGTGAGTG+GGG | - | chr2.1:15428484-15428503 | MS.gene35440:CDS | 60.0% | |
| GGTCACGTGCTGTGGGAAAG+TGG | - | chr2.1:15428460-15428479 | MS.gene35440:CDS | 60.0% | |
| GGTGCAGAGGTTGTGGAGGT+GGG | + | chr2.1:15427913-15427932 | None:intergenic | 60.0% | |
| TCTGCACCGAACACCACCTC+TGG | - | chr2.1:15427925-15427944 | MS.gene35440:intron | 60.0% | |
| TGGAGATGAGTGACGTGGCG+AGG | + | chr2.1:15427992-15428011 | None:intergenic | 60.0% | |
| ! | TCGGGGTGGATGGTGGTGAT+GGG | + | chr2.1:15427822-15427841 | None:intergenic | 60.0% |
| !! | AGAGGTGGTGTTCGGTGCAG+AGG | + | chr2.1:15427926-15427945 | None:intergenic | 60.0% |
| !! | GGTGTTCGGTGCAGAGGTTG+TGG | + | chr2.1:15427920-15427939 | None:intergenic | 60.0% |
| !! | GTTCGGTGCAGAGGTTGTGG+AGG | + | chr2.1:15427917-15427936 | None:intergenic | 60.0% |
| CGGTGCAGAGGTTGTGGAGG+TGG | + | chr2.1:15427914-15427933 | None:intergenic | 65.0% | |
| GAGGTTGTGGAGGTGGGTGG+CGG | + | chr2.1:15427907-15427926 | None:intergenic | 65.0% | |
| GCAGAGGTTGTGGAGGTGGG+TGG | + | chr2.1:15427910-15427929 | None:intergenic | 65.0% | |
| GCGGTGAGAGGATGGGAAGG+TGG | + | chr2.1:15428012-15428031 | None:intergenic | 65.0% | |
| GGAGCGGTGAGAGGATGGGA+AGG | + | chr2.1:15428015-15428034 | None:intergenic | 65.0% | |
| GGGGGTGAGATGCACGTGAG+TGG | - | chr2.1:15428482-15428501 | MS.gene35440:CDS | 65.0% | |
| ! | GTCGGGGTGGATGGTGGTGA+TGG | + | chr2.1:15427823-15427842 | None:intergenic | 65.0% |
| ! | GTTGTGGAGGTGGGTGGCGG+TGG | + | chr2.1:15427904-15427923 | None:intergenic | 70.0% |
| ! | GAGGTGGGTGGCGGTGGAGG+AGG | + | chr2.1:15427898-15427917 | None:intergenic | 75.0% |
| ! | GTGGAGGTGGGTGGCGGTGG+AGG | + | chr2.1:15427901-15427920 | None:intergenic | 75.0% |
| ! | GTGGGTGGCGGTGGAGGAGG+CGG | + | chr2.1:15427895-15427914 | None:intergenic | 75.0% |
| !! | GGTGGCGGTGGAGGAGGCGG+AGG | + | chr2.1:15427892-15427911 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 15427810 | 15428823 | 15427810 | ID=MS.gene35440 |
| chr2.1 | mRNA | 15427810 | 15428823 | 15427810 | ID=MS.gene35440.t1;Parent=MS.gene35440 |
| chr2.1 | exon | 15428128 | 15428823 | 15428128 | ID=MS.gene35440.t1.exon1;Parent=MS.gene35440.t1 |
| chr2.1 | CDS | 15428128 | 15428823 | 15428128 | ID=cds.MS.gene35440.t1;Parent=MS.gene35440.t1 |
| chr2.1 | exon | 15427810 | 15427821 | 15427810 | ID=MS.gene35440.t1.exon2;Parent=MS.gene35440.t1 |
| chr2.1 | CDS | 15427810 | 15427821 | 15427810 | ID=cds.MS.gene35440.t1;Parent=MS.gene35440.t1 |
| Gene Sequence |
| Protein sequence |
