Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06806.t1 | XP_003602403.1 | 99.1 | 218 | 2 | 0 | 1 | 218 | 1 | 218 | 3.60E-84 | 321.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06806.t1 | Q94JX9 | 77.6 | 134 | 29 | 1 | 85 | 217 | 83 | 216 | 2.7e-48 | 193.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06806.t1 | G7J922 | 99.1 | 218 | 2 | 0 | 1 | 218 | 1 | 218 | 2.6e-84 | 321.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene06806 | 0.859406 | 4.23E-63 | -1.69E-46 |
| MS.gene049382 | MS.gene06806 | 0.841644 | 4.19E-58 | -1.69E-46 |
| MS.gene049756 | MS.gene06806 | 0.812019 | 5.23E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene06806 | 0.829397 | 5.27E-55 | -1.69E-46 |
| MS.gene04984 | MS.gene06806 | 0.807217 | 5.63E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene06806 | 0.830891 | 2.28E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene06806 | 0.840724 | 7.32E-58 | -1.69E-46 |
| MS.gene050228 | MS.gene06806 | 0.841481 | 4.63E-58 | -1.69E-46 |
| MS.gene050277 | MS.gene06806 | 0.842633 | 2.30E-58 | -1.69E-46 |
| MS.gene050303 | MS.gene06806 | 0.8285 | 8.69E-55 | -1.69E-46 |
| MS.gene050319 | MS.gene06806 | -0.835066 | 2.08E-56 | -1.69E-46 |
| MS.gene050330 | MS.gene06806 | -0.828628 | 8.09E-55 | -1.69E-46 |
| MS.gene050438 | MS.gene06806 | 0.834603 | 2.72E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene06806 | 0.802686 | 4.99E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene06806 | 0.826296 | 2.93E-54 | -1.69E-46 |
| MS.gene050586 | MS.gene06806 | 0.826104 | 3.26E-54 | -1.69E-46 |
| MS.gene050623 | MS.gene06806 | -0.838731 | 2.42E-57 | -1.69E-46 |
| MS.gene050642 | MS.gene06806 | 0.828299 | 9.71E-55 | -1.69E-46 |
| MS.gene050719 | MS.gene06806 | 0.826153 | 3.17E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene06806 | 0.830013 | 3.73E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene06806 | 0.8075 | 4.90E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene06806 | 0.823825 | 1.12E-53 | -1.69E-46 |
| MS.gene050815 | MS.gene06806 | 0.819112 | 1.38E-52 | -1.69E-46 |
| MS.gene051063 | MS.gene06806 | 0.826234 | 3.03E-54 | -1.69E-46 |
| MS.gene051245 | MS.gene06806 | 0.817952 | 2.52E-52 | -1.69E-46 |
| MS.gene051257 | MS.gene06806 | 0.800706 | 1.27E-48 | -1.69E-46 |
| MS.gene051349 | MS.gene06806 | 0.814569 | 1.44E-51 | -1.69E-46 |
| MS.gene051626 | MS.gene06806 | 0.812558 | 3.99E-51 | -1.69E-46 |
| MS.gene051633 | MS.gene06806 | 0.819084 | 1.40E-52 | -1.69E-46 |
| MS.gene051662 | MS.gene06806 | 0.863376 | 2.60E-64 | -1.69E-46 |
| MS.gene051663 | MS.gene06806 | 0.830589 | 2.70E-55 | -1.69E-46 |
| MS.gene051746 | MS.gene06806 | 0.823697 | 1.20E-53 | -1.69E-46 |
| MS.gene051748 | MS.gene06806 | 0.808438 | 3.10E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene06806 | 0.817754 | 2.80E-52 | -1.69E-46 |
| MS.gene051789 | MS.gene06806 | 0.813836 | 2.09E-51 | -1.69E-46 |
| MS.gene052048 | MS.gene06806 | -0.83397 | 3.93E-56 | -1.69E-46 |
| MS.gene052176 | MS.gene06806 | 0.82363 | 1.25E-53 | -1.69E-46 |
| MS.gene052254 | MS.gene06806 | 0.82848 | 8.78E-55 | -1.69E-46 |
| MS.gene052256 | MS.gene06806 | 0.856922 | 2.32E-62 | -1.69E-46 |
| MS.gene052286 | MS.gene06806 | 0.840175 | 1.02E-57 | -1.69E-46 |
| MS.gene052302 | MS.gene06806 | 0.866869 | 2.08E-65 | -1.69E-46 |
| MS.gene052309 | MS.gene06806 | -0.822663 | 2.10E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene06806 | 0.868363 | 6.90E-66 | -1.69E-46 |
| MS.gene052665 | MS.gene06806 | 0.83735 | 5.47E-57 | -1.69E-46 |
| MS.gene052856 | MS.gene06806 | 0.855061 | 8.12E-62 | -1.69E-46 |
| MS.gene052858 | MS.gene06806 | 0.82684 | 2.18E-54 | -1.69E-46 |
| MS.gene052860 | MS.gene06806 | 0.823252 | 1.53E-53 | -1.69E-46 |
| MS.gene053085 | MS.gene06806 | 0.84664 | 1.91E-59 | -1.69E-46 |
| MS.gene053132 | MS.gene06806 | 0.827073 | 1.91E-54 | -1.69E-46 |
| MS.gene053437 | MS.gene06806 | 0.829641 | 4.60E-55 | -1.69E-46 |
| MS.gene053630 | MS.gene06806 | 0.82508 | 5.70E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene06806 | 0.858658 | 7.08E-63 | -1.69E-46 |
| MS.gene054184 | MS.gene06806 | 0.814451 | 1.53E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene06806 | 0.822581 | 2.19E-53 | -1.69E-46 |
| MS.gene054667 | MS.gene06806 | 0.830573 | 2.72E-55 | -1.69E-46 |
| MS.gene054930 | MS.gene06806 | 0.831499 | 1.61E-55 | -1.69E-46 |
| MS.gene054942 | MS.gene06806 | 0.864502 | 1.16E-64 | -1.69E-46 |
| MS.gene055133 | MS.gene06806 | 0.803314 | 3.70E-49 | -1.69E-46 |
| MS.gene055174 | MS.gene06806 | 0.825652 | 4.17E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene06806 | 0.823842 | 1.11E-53 | -1.69E-46 |
| MS.gene055441 | MS.gene06806 | 0.822028 | 2.95E-53 | -1.69E-46 |
| MS.gene055816 | MS.gene06806 | -0.801456 | 8.93E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene06806 | -0.880164 | 6.88E-70 | -1.69E-46 |
| MS.gene056432 | MS.gene06806 | 0.852256 | 5.20E-61 | -1.69E-46 |
| MS.gene056631 | MS.gene06806 | 0.842441 | 2.58E-58 | -1.69E-46 |
| MS.gene056760 | MS.gene06806 | 0.8234 | 1.41E-53 | -1.69E-46 |
| MS.gene056875 | MS.gene06806 | 0.808561 | 2.92E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene06806 | 0.82732 | 1.67E-54 | -1.69E-46 |
| MS.gene057140 | MS.gene06806 | 0.80814 | 3.59E-50 | -1.69E-46 |
| MS.gene057260 | MS.gene06806 | 0.8427 | 2.20E-58 | -1.69E-46 |
| MS.gene057439 | MS.gene06806 | 0.865467 | 5.78E-65 | -1.69E-46 |
| MS.gene057754 | MS.gene06806 | 0.80901 | 2.34E-50 | -1.69E-46 |
| MS.gene058084 | MS.gene06806 | 0.859338 | 4.43E-63 | -1.69E-46 |
| MS.gene058168 | MS.gene06806 | 0.813987 | 1.94E-51 | -1.69E-46 |
| MS.gene058182 | MS.gene06806 | 0.836175 | 1.09E-56 | -1.69E-46 |
| MS.gene058200 | MS.gene06806 | 0.834865 | 2.34E-56 | -1.69E-46 |
| MS.gene058201 | MS.gene06806 | 0.835687 | 1.45E-56 | -1.69E-46 |
| MS.gene058661 | MS.gene06806 | -0.851844 | 6.81E-61 | -1.69E-46 |
| MS.gene058798 | MS.gene06806 | 0.815975 | 7.02E-52 | -1.69E-46 |
| MS.gene058833 | MS.gene06806 | 0.80145 | 8.95E-49 | -1.69E-46 |
| MS.gene058851 | MS.gene06806 | 0.810508 | 1.11E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene06806 | 0.869671 | 2.60E-66 | -1.69E-46 |
| MS.gene059033 | MS.gene06806 | -0.800573 | 1.35E-48 | -1.69E-46 |
| MS.gene059124 | MS.gene06806 | 0.802084 | 6.63E-49 | -1.69E-46 |
| MS.gene059249 | MS.gene06806 | 0.810015 | 1.42E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene06806 | 0.809394 | 1.93E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene06806 | 0.809148 | 2.18E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene06806 | 0.804637 | 1.96E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene06806 | 0.859406 | 4.23E-63 | -1.69E-46 |
| MS.gene060165 | MS.gene06806 | 0.817701 | 2.88E-52 | -1.69E-46 |
| MS.gene060404 | MS.gene06806 | 0.824497 | 7.82E-54 | -1.69E-46 |
| MS.gene060476 | MS.gene06806 | 0.853384 | 2.48E-61 | -1.69E-46 |
| MS.gene060480 | MS.gene06806 | 0.804313 | 2.29E-49 | -1.69E-46 |
| MS.gene060619 | MS.gene06806 | 0.818004 | 2.46E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene06806 | -0.81219 | 4.80E-51 | -1.69E-46 |
| MS.gene061113 | MS.gene06806 | 0.800503 | 1.40E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06806.t1 | MTR_3g092980 | 99.083 | 218 | 2 | 0 | 1 | 218 | 1 | 218 | 1.75e-156 | 432 |
| MS.gene06806.t1 | MTR_3g092980 | 98.182 | 220 | 2 | 1 | 1 | 218 | 1 | 220 | 2.08e-154 | 427 |
| MS.gene06806.t1 | MTR_3g092970 | 77.632 | 228 | 40 | 4 | 1 | 218 | 1 | 227 | 5.09e-108 | 310 |
| MS.gene06806.t1 | MTR_7g088680 | 69.333 | 150 | 41 | 2 | 69 | 218 | 59 | 203 | 3.04e-67 | 206 |
| MS.gene06806.t1 | MTR_3g093750 | 66.935 | 124 | 25 | 2 | 97 | 218 | 418 | 527 | 1.14e-42 | 150 |
| MS.gene06806.t1 | MTR_3g093720 | 92.857 | 42 | 3 | 0 | 176 | 217 | 215 | 256 | 1.71e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06806.t1 | AT3G49470 | 64.545 | 220 | 73 | 3 | 1 | 218 | 1 | 217 | 1.20e-76 | 230 |
| MS.gene06806.t1 | AT3G49470 | 63.981 | 211 | 71 | 3 | 1 | 209 | 1 | 208 | 2.41e-71 | 217 |
| MS.gene06806.t1 | AT4G10480 | 73.548 | 155 | 40 | 1 | 64 | 217 | 57 | 211 | 1.19e-69 | 212 |
| MS.gene06806.t1 | AT4G10480 | 74.342 | 152 | 38 | 1 | 67 | 217 | 59 | 210 | 2.97e-69 | 211 |
| MS.gene06806.t1 | AT1G33040 | 69.935 | 153 | 45 | 1 | 67 | 218 | 57 | 209 | 1.01e-66 | 204 |
| MS.gene06806.t1 | AT3G12390 | 66.667 | 150 | 47 | 1 | 69 | 218 | 57 | 203 | 4.00e-62 | 192 |
| MS.gene06806.t1 | AT5G13850 | 70.395 | 152 | 43 | 1 | 69 | 218 | 53 | 204 | 2.87e-61 | 190 |
Find 64 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAGACCTACGTTATATT+TGG | 0.142242 | 3.1:+74902827 | MS.gene06806:CDS |
| ATAACGTAGGTCTCTGAATT+TGG | 0.208217 | 3.1:-74902821 | None:intergenic |
| CAGAGACCTACGTTATATTT+GGG | 0.269261 | 3.1:+74902828 | MS.gene06806:CDS |
| TCAACCTCCTCTTCCTCTTC+AGG | 0.290554 | 3.1:-74902974 | None:intergenic |
| GCCATTATAGATCCCATATC+TGG | 0.303001 | 3.1:-74902914 | None:intergenic |
| CACAAGCTGCTCAACAGTTC+AGG | 0.364720 | 3.1:+74902888 | MS.gene06806:CDS |
| ACAGTTCAGGATGCCAGATA+TGG | 0.369124 | 3.1:+74902901 | MS.gene06806:CDS |
| GCCAGATATGGGATCTATAA+TGG | 0.384072 | 3.1:+74902913 | MS.gene06806:CDS |
| AACCCATTGATGGTGTTACT+AGG | 0.392278 | 3.1:+74902459 | MS.gene06806:CDS |
| TACCCTAGTAACACCATCAA+TGG | 0.408223 | 3.1:-74902462 | None:intergenic |
| TTTGGACTCTTGAAGACATC+AGG | 0.416876 | 3.1:-74902803 | None:intergenic |
| TCGTTATCATCCTCGACAAT+AGG | 0.425509 | 3.1:-74901366 | None:intergenic |
| AGGCTCTCAAAACTCACAAT+GGG | 0.426765 | 3.1:+74903071 | MS.gene06806:CDS |
| TTTGAGAGCCTTGACAGCCT+TGG | 0.440959 | 3.1:-74903059 | None:intergenic |
| GAAGAGGAGGTTGATGAAAC+TGG | 0.453955 | 3.1:+74902983 | MS.gene06806:CDS |
| CGTCGACGGAGGGAAGTTGT+TGG | 0.458861 | 3.1:-74901219 | None:intergenic |
| TCGAAAAGCAATGTTGAAGC+TGG | 0.458999 | 3.1:+74902430 | MS.gene06806:CDS |
| TTGTTGGTCGGTGGCTTCGT+CGG | 0.466936 | 3.1:-74901203 | None:intergenic |
| CTTGAGCGTTGTTTCGTCGA+CGG | 0.472022 | 3.1:-74901233 | None:intergenic |
| GAGCTGGTAATGACACAAGC+TGG | 0.474762 | 3.1:+74903025 | MS.gene06806:CDS |
| GTCGGCGGCAGCGTCAATGA+TGG | 0.479255 | 3.1:-74901185 | None:intergenic |
| CAAGAACAAACCACTTCCTC+AGG | 0.481007 | 3.1:+74901252 | MS.gene06806:CDS |
| ACTCACAATGGGGACATTGT+TGG | 0.489937 | 3.1:+74903082 | MS.gene06806:CDS |
| GTGTCTGCAACTGAGAGCTC+AGG | 0.502334 | 3.1:-74902868 | None:intergenic |
| ACCCTAGTAACACCATCAAT+GGG | 0.510907 | 3.1:-74902461 | None:intergenic |
| TTAATTAGTTAGTTCCATGA+TGG | 0.513698 | 3.1:-74903107 | None:intergenic |
| CAGTTCAGGATGCCAGATAT+GGG | 0.516112 | 3.1:+74902902 | MS.gene06806:CDS |
| CTGGGACTAAAACCCATTGA+TGG | 0.518737 | 3.1:+74902449 | MS.gene06806:CDS |
| ACCCATTGATGGTGTTACTA+GGG | 0.519807 | 3.1:+74902460 | MS.gene06806:CDS |
| AAATGGAAAACCTGAGGAAG+TGG | 0.520595 | 3.1:-74901262 | None:intergenic |
| AGCACAGCCTGAAGAGGAAG+AGG | 0.523112 | 3.1:+74902967 | MS.gene06806:CDS |
| TCGGCGGCAGCGTCAATGAT+GGG | 0.536510 | 3.1:-74901184 | None:intergenic |
| GTCAAAAGCCAAGGCTGTCA+AGG | 0.539706 | 3.1:+74903051 | MS.gene06806:CDS |
| CGAAAAGCAATGTTGAAGCT+GGG | 0.542413 | 3.1:+74902431 | MS.gene06806:CDS |
| TCATTACCAGCTCAATGTCG+TGG | 0.549319 | 3.1:-74903015 | None:intergenic |
| AAGGCTCTCAAAACTCACAA+TGG | 0.552612 | 3.1:+74903070 | MS.gene06806:CDS |
| GGACATTGTTGGTGCCATCA+TGG | 0.557792 | 3.1:+74903093 | MS.gene06806:CDS |
| GCAGCGTCAATGATGGGACC+TGG | 0.558575 | 3.1:-74901178 | None:intergenic |
| ATATCGTTAGCCATGTCTCC+AGG | 0.560621 | 3.1:+74901160 | None:intergenic |
| GGAGGGAAGTTGTTGGTCGG+TGG | 0.561823 | 3.1:-74901212 | None:intergenic |
| GAACAAGGTGCTGCAGCTGA+TGG | 0.562947 | 3.1:+74902944 | MS.gene06806:CDS |
| AGCGTTGTTTCGTCGACGGA+GGG | 0.566503 | 3.1:-74901229 | None:intergenic |
| AGCTGGTAATGACACAAGCT+GGG | 0.566806 | 3.1:+74903026 | MS.gene06806:CDS |
| GAGCGTTGTTTCGTCGACGG+AGG | 0.566873 | 3.1:-74901230 | None:intergenic |
| AGCTGGGGTGTCAAAAGCCA+AGG | 0.583545 | 3.1:+74903042 | MS.gene06806:CDS |
| GGAGGCCCACGACATTGAGC+TGG | 0.585026 | 3.1:+74903009 | MS.gene06806:CDS |
| ACAGCCTGAAGAGGAAGAGG+AGG | 0.588386 | 3.1:+74902970 | MS.gene06806:CDS |
| GACGGAGGGAAGTTGTTGGT+CGG | 0.592423 | 3.1:-74901215 | None:intergenic |
| TTGGTCGGTGGCTTCGTCGG+CGG | 0.592563 | 3.1:-74901200 | None:intergenic |
| CATTACCAGCTCAATGTCGT+GGG | 0.601311 | 3.1:-74903014 | None:intergenic |
| TGATGGAGCACAGCCTGAAG+AGG | 0.604282 | 3.1:+74902961 | MS.gene06806:CDS |
| AATGATGGGACCTGGAGACA+TGG | 0.605793 | 3.1:-74901170 | None:intergenic |
| AGAGACCTACGTTATATTTG+GGG | 0.608062 | 3.1:+74902829 | MS.gene06806:CDS |
| GACCTACGTTATATTTGGGG+AGG | 0.613942 | 3.1:+74902832 | MS.gene06806:CDS |
| GGAGGTTGATGAAACTGGCG+TGG | 0.623179 | 3.1:+74902988 | MS.gene06806:CDS |
| CGAGATGTAGGTGGTACTGA+AGG | 0.629687 | 3.1:+74902377 | MS.gene06806:intron |
| TGACGACAAAGACGAATCTG+AGG | 0.650663 | 3.1:+74901389 | MS.gene06806:CDS |
| AGATGATGCTCCTATTGTCG+AGG | 0.659014 | 3.1:+74901356 | MS.gene06806:CDS |
| GGTTGATGAAACTGGCGTGG+AGG | 0.659813 | 3.1:+74902991 | MS.gene06806:CDS |
| TGCCTCCCCAAATATAACGT+AGG | 0.662269 | 3.1:-74902834 | None:intergenic |
| GAAGACGACGAATCTCCTCA+AGG | 0.684211 | 3.1:+74901417 | MS.gene06806:CDS |
| GGCTCTCAAAACTCACAATG+GGG | 0.691219 | 3.1:+74903072 | MS.gene06806:CDS |
| ATAATGGCAAAACAAGAACA+AGG | 0.704410 | 3.1:+74902929 | MS.gene06806:CDS |
| GCTGGTAATGACACAAGCTG+GGG | 0.796663 | 3.1:+74903027 | MS.gene06806:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAGAGAATAAATATA+TGG | - | chr3.1:74901299-74901318 | None:intergenic | 15.0% |
| !! | TATTTATTAACATCGTTTAA+TGG | + | chr3.1:74901456-74901475 | MS.gene06806:intron | 15.0% |
| !! | TTGAATCAAATTAAAAATGA+AGG | - | chr3.1:74902083-74902102 | None:intergenic | 15.0% |
| !!! | CAAGAATTCTAAAAAAATAA+AGG | - | chr3.1:74901844-74901863 | None:intergenic | 15.0% |
| !!! | CATATATTTATTCTCTATTT+TGG | + | chr3.1:74901297-74901316 | MS.gene06806:intron | 15.0% |
| !!! | TATCTGTTGATTTATTTTTT+TGG | + | chr3.1:74902350-74902369 | MS.gene06806:intron | 15.0% |
| !!! | TATTTTCTCAAATTATTGTT+GGG | - | chr3.1:74901995-74902014 | None:intergenic | 15.0% |
| !! | ATTGAAGATACATAAGAAAA+AGG | - | chr3.1:74902296-74902315 | None:intergenic | 20.0% |
| !!! | AATTCTTGTATTTTTGTTCT+GGG | + | chr3.1:74901856-74901875 | MS.gene06806:intron | 20.0% |
| !!! | CTATTTTCTCAAATTATTGT+TGG | - | chr3.1:74901996-74902015 | None:intergenic | 20.0% |
| !!! | GTTTTAAAAAGTAAAAGCTA+AGG | - | chr3.1:74901766-74901785 | None:intergenic | 20.0% |
| ! | AACTATAATCTATGTTGCAT+AGG | - | chr3.1:74901895-74901914 | None:intergenic | 25.0% |
| ! | AATAAATATATGGAATCCGA+TGG | - | chr3.1:74901289-74901308 | None:intergenic | 25.0% |
| ! | ATGAAAAACATAACCTAACA+AGG | - | chr3.1:74902776-74902795 | None:intergenic | 25.0% |
| ! | CTATTCTCACATCATTATAA+AGG | + | chr3.1:74902115-74902134 | MS.gene06806:intron | 25.0% |
| ! | GAATTACTTTATACCTTGTT+AGG | + | chr3.1:74902760-74902779 | MS.gene06806:intron | 25.0% |
| ! | TTAATTAGTTAGTTCCATGA+TGG | - | chr3.1:74903110-74903129 | None:intergenic | 25.0% |
| !!! | GAATTCTTGTATTTTTGTTC+TGG | + | chr3.1:74901855-74901874 | MS.gene06806:intron | 25.0% |
| AAATCAACAGATAACATCAG+AGG | - | chr3.1:74902343-74902362 | None:intergenic | 30.0% | |
| AATCAACAGATAACATCAGA+GGG | - | chr3.1:74902342-74902361 | None:intergenic | 30.0% | |
| ATAATGGCAAAACAAGAACA+AGG | + | chr3.1:74902929-74902948 | MS.gene06806:CDS | 30.0% | |
| CAGGTTCTTGTAAGTAAAAT+CGG | + | chr3.1:74901570-74901589 | MS.gene06806:intron | 30.0% | |
| CGTAGAGGAATTTAAACTAA+TGG | + | chr3.1:74902535-74902554 | MS.gene06806:intron | 30.0% | |
| TAATCTATGTTGCATAGGTA+CGG | - | chr3.1:74901890-74901909 | None:intergenic | 30.0% | |
| TACTATAAGATTCTACCTTG+AGG | - | chr3.1:74901435-74901454 | None:intergenic | 30.0% | |
| !! | AGAAAGTGTCACAAATTTCA+GGG | + | chr3.1:74902216-74902235 | MS.gene06806:intron | 30.0% |
| !!! | CTGTTTTCTGTTTTTTCCTT+AGG | + | chr3.1:74901329-74901348 | MS.gene06806:intron | 30.0% |
| AATCTATGTTGCATAGGTAC+GGG | - | chr3.1:74901889-74901908 | None:intergenic | 35.0% | |
| AGAACAAGGCATAGTACAAA+TGG | - | chr3.1:74901531-74901550 | None:intergenic | 35.0% | |
| AGAGACCTACGTTATATTTG+GGG | + | chr3.1:74902829-74902848 | MS.gene06806:CDS | 35.0% | |
| ATAACGTAGGTCTCTGAATT+TGG | - | chr3.1:74902824-74902843 | None:intergenic | 35.0% | |
| ATATGGAATCCGATGGAAAA+TGG | - | chr3.1:74901282-74901301 | None:intergenic | 35.0% | |
| ATCAGGTATATATCTGGTAC+AGG | - | chr3.1:74901603-74901622 | None:intergenic | 35.0% | |
| ATGCACATTGTGATTTCTCT+AGG | - | chr3.1:74902271-74902290 | None:intergenic | 35.0% | |
| CAGAGACCTACGTTATATTT+GGG | + | chr3.1:74902828-74902847 | MS.gene06806:CDS | 35.0% | |
| GGAGTTAAAGAATTAACGTC+GGG | - | chr3.1:74901974-74901993 | None:intergenic | 35.0% | |
| GGGAGTTAAAGAATTAACGT+CGG | - | chr3.1:74901975-74901994 | None:intergenic | 35.0% | |
| TATCGTACTTGGGTTTCTAT+TGG | + | chr3.1:74901634-74901653 | MS.gene06806:intron | 35.0% | |
| TCAGAGACCTACGTTATATT+TGG | + | chr3.1:74902827-74902846 | MS.gene06806:CDS | 35.0% | |
| ! | AAGTCCAAAGTGCTATCAAA+TGG | + | chr3.1:74902581-74902600 | MS.gene06806:intron | 35.0% |
| ! | GCAAAGTGCAATGCTAATTT+TGG | + | chr3.1:74902186-74902205 | MS.gene06806:intron | 35.0% |
| ! | TCAGGTTTTCCATTTTCCAT+CGG | + | chr3.1:74901270-74901289 | MS.gene06806:intron | 35.0% |
| !! | CAGAAAGTGTCACAAATTTC+AGG | + | chr3.1:74902215-74902234 | MS.gene06806:intron | 35.0% |
| !! | TCTAGGTCAAAAAGCACTAT+AGG | - | chr3.1:74902254-74902273 | None:intergenic | 35.0% |
| !!! | TTTTTTGGACTTCGAGATGT+AGG | + | chr3.1:74902365-74902384 | MS.gene06806:intron | 35.0% |
| AAATGGAAAACCTGAGGAAG+TGG | - | chr3.1:74901265-74901284 | None:intergenic | 40.0% | |
| AAGGCTCTCAAAACTCACAA+TGG | + | chr3.1:74903070-74903089 | MS.gene06806:CDS | 40.0% | |
| ACCCAAGTACGATACACATA+CGG | - | chr3.1:74901628-74901647 | None:intergenic | 40.0% | |
| ACCCTAGTAACACCATCAAT+GGG | - | chr3.1:74902464-74902483 | None:intergenic | 40.0% | |
| ACGGGTATCAGGTATATATC+TGG | - | chr3.1:74901609-74901628 | None:intergenic | 40.0% | |
| AGGCTCTCAAAACTCACAAT+GGG | + | chr3.1:74903071-74903090 | MS.gene06806:CDS | 40.0% | |
| ATTTGGGGAGGCAAAAATAG+AGG | + | chr3.1:74902844-74902863 | MS.gene06806:CDS | 40.0% | |
| CACGTTCTTTCTGTGATCTA+TGG | + | chr3.1:74902716-74902735 | MS.gene06806:intron | 40.0% | |
| CGAAAAGCAATGTTGAAGCT+GGG | + | chr3.1:74902431-74902450 | MS.gene06806:CDS | 40.0% | |
| CTGTTGTCAAATAGACGTAG+AGG | + | chr3.1:74902520-74902539 | MS.gene06806:intron | 40.0% | |
| GATGGAAAATGGAAAACCTG+AGG | - | chr3.1:74901271-74901290 | None:intergenic | 40.0% | |
| GCCAGATATGGGATCTATAA+TGG | + | chr3.1:74902913-74902932 | MS.gene06806:CDS | 40.0% | |
| GCCATTATAGATCCCATATC+TGG | - | chr3.1:74902917-74902936 | None:intergenic | 40.0% | |
| GCTATTGTCATGTAGCACAA+TGG | + | chr3.1:74902615-74902634 | MS.gene06806:intron | 40.0% | |
| GTTCTTTCTGTGATCTATGG+TGG | + | chr3.1:74902719-74902738 | MS.gene06806:intron | 40.0% | |
| TACCCTAGTAACACCATCAA+TGG | - | chr3.1:74902465-74902484 | None:intergenic | 40.0% | |
| TCGAAAAGCAATGTTGAAGC+TGG | + | chr3.1:74902430-74902449 | MS.gene06806:CDS | 40.0% | |
| TCGTTATCATCCTCGACAAT+AGG | - | chr3.1:74901369-74901388 | None:intergenic | 40.0% | |
| TTTGGACTCTTGAAGACATC+AGG | - | chr3.1:74902806-74902825 | None:intergenic | 40.0% | |
| ! | AGAGGGTACATGTAAAACTC+AGG | + | chr3.1:74901551-74901570 | MS.gene06806:intron | 40.0% |
| ! | GATGCCATTTGATAGCACTT+TGG | - | chr3.1:74902588-74902607 | None:intergenic | 40.0% |
| ! | GTACTATGCCTTGTTCTAGA+GGG | + | chr3.1:74901534-74901553 | MS.gene06806:intron | 40.0% |
| ! | TGTACTATGCCTTGTTCTAG+AGG | + | chr3.1:74901533-74901552 | MS.gene06806:intron | 40.0% |
| !! | AACCCATTGATGGTGTTACT+AGG | + | chr3.1:74902459-74902478 | MS.gene06806:CDS | 40.0% |
| !! | ACCCATTGATGGTGTTACTA+GGG | + | chr3.1:74902460-74902479 | MS.gene06806:CDS | 40.0% |
| !! | TACATGTACCCTCTAGAACA+AGG | - | chr3.1:74901545-74901564 | None:intergenic | 40.0% |
| ACAGTTCAGGATGCCAGATA+TGG | + | chr3.1:74902901-74902920 | MS.gene06806:CDS | 45.0% | |
| ACCCGTATGTGTATCGTACT+TGG | + | chr3.1:74901623-74901642 | MS.gene06806:intron | 45.0% | |
| ACGATACACATACGGGTATC+AGG | - | chr3.1:74901620-74901639 | None:intergenic | 45.0% | |
| ACTCACAATGGGGACATTGT+TGG | + | chr3.1:74903082-74903101 | MS.gene06806:CDS | 45.0% | |
| AGATGATGCTCCTATTGTCG+AGG | + | chr3.1:74901356-74901375 | MS.gene06806:CDS | 45.0% | |
| ATTGACACGTGTCGAACAAC+GGG | - | chr3.1:74901950-74901969 | None:intergenic | 45.0% | |
| CAAGAACAAACCACTTCCTC+AGG | + | chr3.1:74901252-74901271 | MS.gene06806:CDS | 45.0% | |
| CAGTTCAGGATGCCAGATAT+GGG | + | chr3.1:74902902-74902921 | MS.gene06806:CDS | 45.0% | |
| CATTACCAGCTCAATGTCGT+GGG | - | chr3.1:74903017-74903036 | None:intergenic | 45.0% | |
| CATTGACACGTGTCGAACAA+CGG | - | chr3.1:74901951-74901970 | None:intergenic | 45.0% | |
| CCCAAGTACGATACACATAC+GGG | - | chr3.1:74901627-74901646 | None:intergenic | 45.0% | |
| CCCGTATGTGTATCGTACTT+GGG | + | chr3.1:74901624-74901643 | MS.gene06806:intron | 45.0% | |
| CTGGGACTAAAACCCATTGA+TGG | + | chr3.1:74902449-74902468 | MS.gene06806:CDS | 45.0% | |
| GACCTACGTTATATTTGGGG+AGG | + | chr3.1:74902832-74902851 | MS.gene06806:CDS | 45.0% | |
| GGCTCTCAAAACTCACAATG+GGG | + | chr3.1:74903072-74903091 | MS.gene06806:CDS | 45.0% | |
| TCACGAATCGCGAAAGATAG+TGG | - | chr3.1:74902653-74902672 | None:intergenic | 45.0% | |
| TCATTACCAGCTCAATGTCG+TGG | - | chr3.1:74903018-74903037 | None:intergenic | 45.0% | |
| TGACGACAAAGACGAATCTG+AGG | + | chr3.1:74901389-74901408 | MS.gene06806:CDS | 45.0% | |
| TGCCTCCCCAAATATAACGT+AGG | - | chr3.1:74902837-74902856 | None:intergenic | 45.0% | |
| TGTCTGTGTCATGTTGCTGT+CGG | + | chr3.1:74902024-74902043 | MS.gene06806:intron | 45.0% | |
| TTTGGACTTCGAGATGTAGG+TGG | + | chr3.1:74902368-74902387 | MS.gene06806:intron | 45.0% | |
| ! | AGCTGGTAATGACACAAGCT+GGG | + | chr3.1:74903026-74903045 | MS.gene06806:CDS | 45.0% |
| ! | GGAGCATCATCTTCTTCCTA+AGG | - | chr3.1:74901348-74901367 | None:intergenic | 45.0% |
| ! | TCAGAGGGCACACATGTATA+TGG | - | chr3.1:74902327-74902346 | None:intergenic | 45.0% |
| !! | GAAGAGGAGGTTGATGAAAC+TGG | + | chr3.1:74902983-74903002 | MS.gene06806:CDS | 45.0% |
| !! | TCTGTGATCTATGGTGGATG+AGG | + | chr3.1:74902725-74902744 | MS.gene06806:intron | 45.0% |
| CACAAGCTGCTCAACAGTTC+AGG | + | chr3.1:74902888-74902907 | MS.gene06806:CDS | 50.0% | |
| GAAGACGACGAATCTCCTCA+AGG | + | chr3.1:74901417-74901436 | MS.gene06806:CDS | 50.0% | |
| GTCAAAAGCCAAGGCTGTCA+AGG | + | chr3.1:74903051-74903070 | MS.gene06806:CDS | 50.0% | |
| GTCATGTTGCTGTCGGACAT+TGG | + | chr3.1:74902031-74902050 | MS.gene06806:intron | 50.0% | |
| TCAACCTCCTCTTCCTCTTC+AGG | - | chr3.1:74902977-74902996 | None:intergenic | 50.0% | |
| TTCGCGATTCGTGATCGACA+AGG | + | chr3.1:74902659-74902678 | MS.gene06806:intron | 50.0% | |
| TTTGAGAGCCTTGACAGCCT+TGG | - | chr3.1:74903062-74903081 | None:intergenic | 50.0% | |
| ! | CGAGATGTAGGTGGTACTGA+AGG | + | chr3.1:74902377-74902396 | MS.gene06806:intron | 50.0% |
| ! | CTTGAGCGTTGTTTCGTCGA+CGG | - | chr3.1:74901236-74901255 | None:intergenic | 50.0% |
| ! | GAGCTGGTAATGACACAAGC+TGG | + | chr3.1:74903025-74903044 | MS.gene06806:CDS | 50.0% |
| ! | GCTGGTAATGACACAAGCTG+GGG | + | chr3.1:74903027-74903046 | MS.gene06806:CDS | 50.0% |
| !! | GGACATTGTTGGTGCCATCA+TGG | + | chr3.1:74903093-74903112 | MS.gene06806:CDS | 50.0% |
| !! | GTGATCTATGGTGGATGAGG+AGG | + | chr3.1:74902728-74902747 | MS.gene06806:intron | 50.0% |
| ACAGCCTGAAGAGGAAGAGG+AGG | + | chr3.1:74902970-74902989 | MS.gene06806:CDS | 55.0% | |
| AGCACAGCCTGAAGAGGAAG+AGG | + | chr3.1:74902967-74902986 | MS.gene06806:CDS | 55.0% | |
| GACGGAGGGAAGTTGTTGGT+CGG | - | chr3.1:74901218-74901237 | None:intergenic | 55.0% | |
| GTGTCTGCAACTGAGAGCTC+AGG | - | chr3.1:74902871-74902890 | None:intergenic | 55.0% | |
| GTTGCTGTCGGACATTGGCA+CGG | + | chr3.1:74902036-74902055 | MS.gene06806:intron | 55.0% | |
| TGATGGAGCACAGCCTGAAG+AGG | + | chr3.1:74902961-74902980 | MS.gene06806:CDS | 55.0% | |
| TTGTTGGTCGGTGGCTTCGT+CGG | - | chr3.1:74901206-74901225 | None:intergenic | 55.0% | |
| ! | AGCGTTGTTTCGTCGACGGA+GGG | - | chr3.1:74901232-74901251 | None:intergenic | 55.0% |
| ! | AGCTGGGGTGTCAAAAGCCA+AGG | + | chr3.1:74903042-74903061 | MS.gene06806:CDS | 55.0% |
| !! | GAACAAGGTGCTGCAGCTGA+TGG | + | chr3.1:74902944-74902963 | MS.gene06806:CDS | 55.0% |
| !! | GGAGGTTGATGAAACTGGCG+TGG | + | chr3.1:74902988-74903007 | MS.gene06806:CDS | 55.0% |
| !! | GGTTGATGAAACTGGCGTGG+AGG | + | chr3.1:74902991-74903010 | MS.gene06806:CDS | 55.0% |
| CGTCGACGGAGGGAAGTTGT+TGG | - | chr3.1:74901222-74901241 | None:intergenic | 60.0% | |
| GGAGGGAAGTTGTTGGTCGG+TGG | - | chr3.1:74901215-74901234 | None:intergenic | 60.0% | |
| TCGGCGGCAGCGTCAATGAT+GGG | - | chr3.1:74901187-74901206 | None:intergenic | 60.0% | |
| ! | GAGCGTTGTTTCGTCGACGG+AGG | - | chr3.1:74901233-74901252 | None:intergenic | 60.0% |
| ! | GCAGCGTCAATGATGGGACC+TGG | - | chr3.1:74901181-74901200 | None:intergenic | 60.0% |
| GGAGGCCCACGACATTGAGC+TGG | + | chr3.1:74903009-74903028 | MS.gene06806:CDS | 65.0% | |
| GTCGGCGGCAGCGTCAATGA+TGG | - | chr3.1:74901188-74901207 | None:intergenic | 65.0% | |
| TTGGTCGGTGGCTTCGTCGG+CGG | - | chr3.1:74901203-74901222 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 74901172 | 74903129 | 74901172 | ID=MS.gene06806 |
| chr3.1 | mRNA | 74901172 | 74903129 | 74901172 | ID=MS.gene06806.t1;Parent=MS.gene06806 |
| chr3.1 | exon | 74901172 | 74901273 | 74901172 | ID=MS.gene06806.t1.exon1;Parent=MS.gene06806.t1 |
| chr3.1 | CDS | 74901172 | 74901273 | 74901172 | ID=cds.MS.gene06806.t1;Parent=MS.gene06806.t1 |
| chr3.1 | exon | 74901351 | 74901438 | 74901351 | ID=MS.gene06806.t1.exon2;Parent=MS.gene06806.t1 |
| chr3.1 | CDS | 74901351 | 74901438 | 74901351 | ID=cds.MS.gene06806.t1;Parent=MS.gene06806.t1 |
| chr3.1 | exon | 74902387 | 74902505 | 74902387 | ID=MS.gene06806.t1.exon3;Parent=MS.gene06806.t1 |
| chr3.1 | CDS | 74902387 | 74902505 | 74902387 | ID=cds.MS.gene06806.t1;Parent=MS.gene06806.t1 |
| chr3.1 | exon | 74902782 | 74903129 | 74902782 | ID=MS.gene06806.t1.exon4;Parent=MS.gene06806.t1 |
| chr3.1 | CDS | 74902782 | 74903129 | 74902782 | ID=cds.MS.gene06806.t1;Parent=MS.gene06806.t1 |
| Gene Sequence |
| Protein sequence |
