Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06594.t1 | XP_003602403.1 | 99.1 | 218 | 2 | 0 | 1 | 218 | 1 | 218 | 3.60E-84 | 321.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06594.t1 | Q94JX9 | 77.6 | 134 | 29 | 1 | 85 | 217 | 83 | 216 | 2.7e-48 | 193.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06594.t1 | G7J922 | 99.1 | 218 | 2 | 0 | 1 | 218 | 1 | 218 | 2.6e-84 | 321.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene06594 | 0.857201 | 1.92E-62 | -1.69E-46 |
| MS.gene04933 | MS.gene06594 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene049382 | MS.gene06594 | 0.837158 | 6.13E-57 | -1.69E-46 |
| MS.gene049756 | MS.gene06594 | 0.806568 | 7.72E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene06594 | 0.825346 | 4.93E-54 | -1.69E-46 |
| MS.gene04984 | MS.gene06594 | 0.80168 | 8.03E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene06594 | 0.830974 | 2.17E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene06594 | 0.839483 | 1.54E-57 | -1.69E-46 |
| MS.gene050228 | MS.gene06594 | 0.841566 | 4.40E-58 | -1.69E-46 |
| MS.gene050277 | MS.gene06594 | 0.834679 | 2.61E-56 | -1.69E-46 |
| MS.gene050303 | MS.gene06594 | 0.827316 | 1.67E-54 | -1.69E-46 |
| MS.gene050319 | MS.gene06594 | -0.838479 | 2.81E-57 | -1.69E-46 |
| MS.gene050330 | MS.gene06594 | -0.825628 | 4.22E-54 | -1.69E-46 |
| MS.gene050438 | MS.gene06594 | 0.83967 | 1.38E-57 | -1.69E-46 |
| MS.gene050442 | MS.gene06594 | 0.808414 | 3.13E-50 | -1.69E-46 |
| MS.gene050558 | MS.gene06594 | 0.827186 | 1.80E-54 | -1.69E-46 |
| MS.gene050586 | MS.gene06594 | 0.827972 | 1.16E-54 | -1.69E-46 |
| MS.gene050623 | MS.gene06594 | -0.836927 | 7.02E-57 | -1.69E-46 |
| MS.gene050642 | MS.gene06594 | 0.825072 | 5.72E-54 | -1.69E-46 |
| MS.gene050719 | MS.gene06594 | 0.828647 | 8.00E-55 | -1.69E-46 |
| MS.gene050721 | MS.gene06594 | 0.831907 | 1.28E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene06594 | 0.808886 | 2.48E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene06594 | 0.822973 | 1.78E-53 | -1.69E-46 |
| MS.gene050815 | MS.gene06594 | 0.819213 | 1.31E-52 | -1.69E-46 |
| MS.gene051063 | MS.gene06594 | 0.817516 | 3.17E-52 | -1.69E-46 |
| MS.gene051245 | MS.gene06594 | 0.805336 | 1.40E-49 | -1.69E-46 |
| MS.gene051257 | MS.gene06594 | 0.806009 | 1.01E-49 | -1.69E-46 |
| MS.gene051349 | MS.gene06594 | 0.81229 | 4.57E-51 | -1.69E-46 |
| MS.gene051626 | MS.gene06594 | 0.812608 | 3.89E-51 | -1.69E-46 |
| MS.gene051633 | MS.gene06594 | 0.813735 | 2.20E-51 | -1.69E-46 |
| MS.gene051662 | MS.gene06594 | 0.861869 | 7.58E-64 | -1.69E-46 |
| MS.gene051663 | MS.gene06594 | 0.828093 | 1.09E-54 | -1.69E-46 |
| MS.gene051746 | MS.gene06594 | 0.816389 | 5.67E-52 | -1.69E-46 |
| MS.gene051748 | MS.gene06594 | 0.800516 | 1.39E-48 | -1.69E-46 |
| MS.gene051757 | MS.gene06594 | 0.811578 | 6.53E-51 | -1.69E-46 |
| MS.gene051789 | MS.gene06594 | 0.807946 | 3.94E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene06594 | 0.800624 | 1.32E-48 | -1.69E-46 |
| MS.gene052048 | MS.gene06594 | -0.834879 | 2.32E-56 | -1.69E-46 |
| MS.gene052176 | MS.gene06594 | 0.818317 | 2.09E-52 | -1.69E-46 |
| MS.gene052254 | MS.gene06594 | 0.823378 | 1.43E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene06594 | 0.852489 | 4.46E-61 | -1.69E-46 |
| MS.gene052286 | MS.gene06594 | 0.834518 | 2.86E-56 | -1.69E-46 |
| MS.gene052302 | MS.gene06594 | 0.860333 | 2.22E-63 | -1.69E-46 |
| MS.gene052309 | MS.gene06594 | -0.817988 | 2.48E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene06594 | 0.864501 | 1.16E-64 | -1.69E-46 |
| MS.gene052665 | MS.gene06594 | 0.837684 | 4.50E-57 | -1.69E-46 |
| MS.gene052856 | MS.gene06594 | 0.850689 | 1.44E-60 | -1.69E-46 |
| MS.gene052858 | MS.gene06594 | 0.822902 | 1.85E-53 | -1.69E-46 |
| MS.gene052860 | MS.gene06594 | 0.820283 | 7.44E-53 | -1.69E-46 |
| MS.gene053085 | MS.gene06594 | 0.850979 | 1.20E-60 | -1.69E-46 |
| MS.gene053132 | MS.gene06594 | 0.824036 | 1.00E-53 | -1.69E-46 |
| MS.gene053437 | MS.gene06594 | 0.825779 | 3.89E-54 | -1.69E-46 |
| MS.gene053630 | MS.gene06594 | 0.827608 | 1.42E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene06594 | 0.859758 | 3.31E-63 | -1.69E-46 |
| MS.gene054184 | MS.gene06594 | 0.817295 | 3.55E-52 | -1.69E-46 |
| MS.gene054185 | MS.gene06594 | 0.825062 | 5.75E-54 | -1.69E-46 |
| MS.gene054473 | MS.gene06594 | 0.800333 | 1.51E-48 | -1.69E-46 |
| MS.gene054667 | MS.gene06594 | 0.829138 | 6.09E-55 | -1.69E-46 |
| MS.gene054930 | MS.gene06594 | 0.829935 | 3.90E-55 | -1.69E-46 |
| MS.gene054942 | MS.gene06594 | 0.863049 | 3.28E-64 | -1.69E-46 |
| MS.gene055174 | MS.gene06594 | 0.818332 | 2.07E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene06594 | 0.825488 | 4.56E-54 | -1.69E-46 |
| MS.gene055441 | MS.gene06594 | 0.81806 | 2.39E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene06594 | 0.801901 | 7.23E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene06594 | -0.873764 | 1.14E-67 | -1.69E-46 |
| MS.gene056432 | MS.gene06594 | 0.845386 | 4.19E-59 | -1.69E-46 |
| MS.gene056631 | MS.gene06594 | 0.835699 | 1.44E-56 | -1.69E-46 |
| MS.gene056760 | MS.gene06594 | 0.817784 | 2.75E-52 | -1.69E-46 |
| MS.gene056875 | MS.gene06594 | 0.809213 | 2.11E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene06594 | 0.818241 | 2.17E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene06594 | 0.801348 | 9.40E-49 | -1.69E-46 |
| MS.gene057140 | MS.gene06594 | 0.804613 | 1.99E-49 | -1.69E-46 |
| MS.gene057245 | MS.gene06594 | 0.803359 | 3.62E-49 | -1.69E-46 |
| MS.gene057260 | MS.gene06594 | 0.844338 | 8.04E-59 | -1.69E-46 |
| MS.gene057439 | MS.gene06594 | 0.866767 | 2.24E-65 | -1.69E-46 |
| MS.gene057754 | MS.gene06594 | 0.806919 | 6.51E-50 | -1.69E-46 |
| MS.gene058084 | MS.gene06594 | 0.860464 | 2.03E-63 | -1.69E-46 |
| MS.gene058168 | MS.gene06594 | 0.815837 | 7.53E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene06594 | 0.823514 | 1.33E-53 | -1.69E-46 |
| MS.gene058200 | MS.gene06594 | 0.834038 | 3.78E-56 | -1.69E-46 |
| MS.gene058201 | MS.gene06594 | 0.826556 | 2.54E-54 | -1.69E-46 |
| MS.gene058661 | MS.gene06594 | -0.841834 | 3.74E-58 | -1.69E-46 |
| MS.gene058798 | MS.gene06594 | 0.809731 | 1.64E-50 | -1.69E-46 |
| MS.gene058851 | MS.gene06594 | 0.814358 | 1.60E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene06594 | 0.864723 | 9.90E-65 | -1.69E-46 |
| MS.gene059124 | MS.gene06594 | 0.804969 | 1.67E-49 | -1.69E-46 |
| MS.gene059249 | MS.gene06594 | 0.807475 | 4.96E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene06594 | 0.806031 | 1.00E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene06594 | 0.810086 | 1.37E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene06594 | 0.852861 | 3.50E-61 | -1.69E-46 |
| MS.gene060165 | MS.gene06594 | 0.812325 | 4.49E-51 | -1.69E-46 |
| MS.gene060404 | MS.gene06594 | 0.826477 | 2.65E-54 | -1.69E-46 |
| MS.gene060476 | MS.gene06594 | 0.849147 | 3.90E-60 | -1.69E-46 |
| MS.gene060480 | MS.gene06594 | 0.803766 | 2.98E-49 | -1.69E-46 |
| MS.gene060619 | MS.gene06594 | 0.812528 | 4.05E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene06594 | -0.814529 | 1.47E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06594.t1 | MTR_3g092980 | 99.083 | 218 | 2 | 0 | 1 | 218 | 1 | 218 | 1.75e-156 | 432 |
| MS.gene06594.t1 | MTR_3g092980 | 98.182 | 220 | 2 | 1 | 1 | 218 | 1 | 220 | 2.08e-154 | 427 |
| MS.gene06594.t1 | MTR_3g092970 | 77.632 | 228 | 40 | 4 | 1 | 218 | 1 | 227 | 5.09e-108 | 310 |
| MS.gene06594.t1 | MTR_7g088680 | 69.333 | 150 | 41 | 2 | 69 | 218 | 59 | 203 | 3.04e-67 | 206 |
| MS.gene06594.t1 | MTR_3g093750 | 66.935 | 124 | 25 | 2 | 97 | 218 | 418 | 527 | 1.14e-42 | 150 |
| MS.gene06594.t1 | MTR_3g093720 | 92.857 | 42 | 3 | 0 | 176 | 217 | 215 | 256 | 1.71e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06594.t1 | AT3G49470 | 64.545 | 220 | 73 | 3 | 1 | 218 | 1 | 217 | 1.20e-76 | 230 |
| MS.gene06594.t1 | AT3G49470 | 63.981 | 211 | 71 | 3 | 1 | 209 | 1 | 208 | 2.41e-71 | 217 |
| MS.gene06594.t1 | AT4G10480 | 73.548 | 155 | 40 | 1 | 64 | 217 | 57 | 211 | 1.19e-69 | 212 |
| MS.gene06594.t1 | AT4G10480 | 74.342 | 152 | 38 | 1 | 67 | 217 | 59 | 210 | 2.97e-69 | 211 |
| MS.gene06594.t1 | AT1G33040 | 69.935 | 153 | 45 | 1 | 67 | 218 | 57 | 209 | 1.01e-66 | 204 |
| MS.gene06594.t1 | AT3G12390 | 66.667 | 150 | 47 | 1 | 69 | 218 | 57 | 203 | 4.00e-62 | 192 |
| MS.gene06594.t1 | AT5G13850 | 70.395 | 152 | 43 | 1 | 69 | 218 | 53 | 204 | 2.87e-61 | 190 |
Find 64 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAGACCTACGTTATATT+TGG | 0.142242 | 3.3:+77609268 | MS.gene06594:CDS |
| ATAACGTAGGTCTCTGAATT+TGG | 0.208217 | 3.3:-77609262 | None:intergenic |
| CAGAGACCTACGTTATATTT+GGG | 0.269261 | 3.3:+77609269 | MS.gene06594:CDS |
| TCAACCTCCTCTTCCTCTTC+AGG | 0.290554 | 3.3:-77609415 | None:intergenic |
| GCCATTATAGATCCCATATC+TGG | 0.303001 | 3.3:-77609355 | None:intergenic |
| CACAAGCTGCTCAACAGTTC+AGG | 0.364720 | 3.3:+77609329 | MS.gene06594:CDS |
| ACAGTTCAGGATGCCAGATA+TGG | 0.369124 | 3.3:+77609342 | MS.gene06594:CDS |
| GCCAGATATGGGATCTATAA+TGG | 0.384072 | 3.3:+77609354 | MS.gene06594:CDS |
| AACCCATTGATGGTGTTACT+AGG | 0.392278 | 3.3:+77608900 | MS.gene06594:CDS |
| TACCCTAGTAACACCATCAA+TGG | 0.408223 | 3.3:-77608903 | None:intergenic |
| TTTGGACTCTTGAAGACATC+AGG | 0.416876 | 3.3:-77609244 | None:intergenic |
| TCGTTATCATCCTCGACAAT+AGG | 0.425509 | 3.3:-77607807 | None:intergenic |
| AGGCTCTCAAAACTCACAAT+GGG | 0.426765 | 3.3:+77609512 | MS.gene06594:CDS |
| TTTGAGAGCCTTGACAGCCT+TGG | 0.440959 | 3.3:-77609500 | None:intergenic |
| GAAGAGGAGGTTGATGAAAC+TGG | 0.453955 | 3.3:+77609424 | MS.gene06594:CDS |
| CGTCGACGGAGGGAAGTTGT+TGG | 0.458861 | 3.3:-77607660 | None:intergenic |
| TCGAAAAGCAATGTTGAAGC+TGG | 0.458999 | 3.3:+77608871 | MS.gene06594:CDS |
| TTGTTGGTCGGTGGCTTCGT+CGG | 0.466936 | 3.3:-77607644 | None:intergenic |
| CTTGAGCGTTGTTTCGTCGA+CGG | 0.472022 | 3.3:-77607674 | None:intergenic |
| GAGCTGGTAATGACACAAGC+TGG | 0.474762 | 3.3:+77609466 | MS.gene06594:CDS |
| GTCGGCGGCAGCGTCAATGA+TGG | 0.479255 | 3.3:-77607626 | None:intergenic |
| CAAGAACAAACCACTTCCTC+AGG | 0.481007 | 3.3:+77607693 | MS.gene06594:CDS |
| ACTCACAATGGGGACATTGT+TGG | 0.489937 | 3.3:+77609523 | MS.gene06594:CDS |
| GTGTCTGCAACTGAGAGCTC+AGG | 0.502334 | 3.3:-77609309 | None:intergenic |
| ACCCTAGTAACACCATCAAT+GGG | 0.510907 | 3.3:-77608902 | None:intergenic |
| TTAATTAGTTAGTTCCATGA+TGG | 0.513698 | 3.3:-77609548 | None:intergenic |
| CAGTTCAGGATGCCAGATAT+GGG | 0.516112 | 3.3:+77609343 | MS.gene06594:CDS |
| CTGGGACTAAAACCCATTGA+TGG | 0.518737 | 3.3:+77608890 | MS.gene06594:CDS |
| ACCCATTGATGGTGTTACTA+GGG | 0.519807 | 3.3:+77608901 | MS.gene06594:CDS |
| AAATGGAAAACCTGAGGAAG+TGG | 0.520595 | 3.3:-77607703 | None:intergenic |
| AGCACAGCCTGAAGAGGAAG+AGG | 0.523112 | 3.3:+77609408 | MS.gene06594:CDS |
| TCGGCGGCAGCGTCAATGAT+GGG | 0.536510 | 3.3:-77607625 | None:intergenic |
| GTCAAAAGCCAAGGCTGTCA+AGG | 0.539706 | 3.3:+77609492 | MS.gene06594:CDS |
| CGAAAAGCAATGTTGAAGCT+GGG | 0.542413 | 3.3:+77608872 | MS.gene06594:CDS |
| TCATTACCAGCTCAATGTCG+TGG | 0.549319 | 3.3:-77609456 | None:intergenic |
| AAGGCTCTCAAAACTCACAA+TGG | 0.552612 | 3.3:+77609511 | MS.gene06594:CDS |
| GGACATTGTTGGTGCCATCA+TGG | 0.557792 | 3.3:+77609534 | MS.gene06594:CDS |
| GCAGCGTCAATGATGGGACC+TGG | 0.558575 | 3.3:-77607619 | None:intergenic |
| ATATCGTTAGCCATGTCTCC+AGG | 0.560621 | 3.3:+77607601 | None:intergenic |
| GGAGGGAAGTTGTTGGTCGG+TGG | 0.561823 | 3.3:-77607653 | None:intergenic |
| GAACAAGGTGCTGCAGCTGA+TGG | 0.562947 | 3.3:+77609385 | MS.gene06594:CDS |
| AGCGTTGTTTCGTCGACGGA+GGG | 0.566503 | 3.3:-77607670 | None:intergenic |
| AGCTGGTAATGACACAAGCT+GGG | 0.566806 | 3.3:+77609467 | MS.gene06594:CDS |
| GAGCGTTGTTTCGTCGACGG+AGG | 0.566873 | 3.3:-77607671 | None:intergenic |
| AGCTGGGGTGTCAAAAGCCA+AGG | 0.583545 | 3.3:+77609483 | MS.gene06594:CDS |
| GGAGGCCCACGACATTGAGC+TGG | 0.585026 | 3.3:+77609450 | MS.gene06594:CDS |
| ACAGCCTGAAGAGGAAGAGG+AGG | 0.588386 | 3.3:+77609411 | MS.gene06594:CDS |
| GACGGAGGGAAGTTGTTGGT+CGG | 0.592423 | 3.3:-77607656 | None:intergenic |
| TTGGTCGGTGGCTTCGTCGG+CGG | 0.592563 | 3.3:-77607641 | None:intergenic |
| CATTACCAGCTCAATGTCGT+GGG | 0.601311 | 3.3:-77609455 | None:intergenic |
| TGATGGAGCACAGCCTGAAG+AGG | 0.604282 | 3.3:+77609402 | MS.gene06594:CDS |
| AATGATGGGACCTGGAGACA+TGG | 0.605793 | 3.3:-77607611 | None:intergenic |
| AGAGACCTACGTTATATTTG+GGG | 0.608062 | 3.3:+77609270 | MS.gene06594:CDS |
| GACCTACGTTATATTTGGGG+AGG | 0.613942 | 3.3:+77609273 | MS.gene06594:CDS |
| GGAGGTTGATGAAACTGGCG+TGG | 0.623179 | 3.3:+77609429 | MS.gene06594:CDS |
| CGAGATGTAGGTGGTACTGA+AGG | 0.629687 | 3.3:+77608818 | MS.gene06594:intron |
| TGACGACAAAGACGAATCTG+AGG | 0.650663 | 3.3:+77607830 | MS.gene06594:CDS |
| AGATGATGCTCCTATTGTCG+AGG | 0.659014 | 3.3:+77607797 | MS.gene06594:CDS |
| GGTTGATGAAACTGGCGTGG+AGG | 0.659813 | 3.3:+77609432 | MS.gene06594:CDS |
| TGCCTCCCCAAATATAACGT+AGG | 0.662269 | 3.3:-77609275 | None:intergenic |
| GAAGACGACGAATCTCCTCA+AGG | 0.684211 | 3.3:+77607858 | MS.gene06594:CDS |
| GGCTCTCAAAACTCACAATG+GGG | 0.691219 | 3.3:+77609513 | MS.gene06594:CDS |
| ATAATGGCAAAACAAGAACA+AGG | 0.704410 | 3.3:+77609370 | MS.gene06594:CDS |
| GCTGGTAATGACACAAGCTG+GGG | 0.796663 | 3.3:+77609468 | MS.gene06594:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAGAGAATAAATATA+TGG | - | chr3.3:77607740-77607759 | None:intergenic | 15.0% |
| !! | TATTTATTAACATCGTTTAA+TGG | + | chr3.3:77607897-77607916 | MS.gene06594:intron | 15.0% |
| !! | TTGAATCAAATTAAAAATGA+AGG | - | chr3.3:77608524-77608543 | None:intergenic | 15.0% |
| !!! | CAAGAATTCTAAAAAAATAA+AGG | - | chr3.3:77608285-77608304 | None:intergenic | 15.0% |
| !!! | CATATATTTATTCTCTATTT+TGG | + | chr3.3:77607738-77607757 | MS.gene06594:intron | 15.0% |
| !!! | TATCTGTTGATTTATTTTTT+TGG | + | chr3.3:77608791-77608810 | MS.gene06594:intron | 15.0% |
| !!! | TATTTTCTCAAATTATTGTT+GGG | - | chr3.3:77608436-77608455 | None:intergenic | 15.0% |
| !! | ATTGAAGATACATAAGAAAA+AGG | - | chr3.3:77608737-77608756 | None:intergenic | 20.0% |
| !!! | AATTCTTGTATTTTTGTTCT+GGG | + | chr3.3:77608297-77608316 | MS.gene06594:intron | 20.0% |
| !!! | CTATTTTCTCAAATTATTGT+TGG | - | chr3.3:77608437-77608456 | None:intergenic | 20.0% |
| !!! | GTTTTAAAAAGTAAAAGCTA+AGG | - | chr3.3:77608207-77608226 | None:intergenic | 20.0% |
| ! | AACTATAATCTATGTTGCAT+AGG | - | chr3.3:77608336-77608355 | None:intergenic | 25.0% |
| ! | AATAAATATATGGAATCCGA+TGG | - | chr3.3:77607730-77607749 | None:intergenic | 25.0% |
| ! | ATGAAAAACATAACCTAACA+AGG | - | chr3.3:77609217-77609236 | None:intergenic | 25.0% |
| ! | CTATTCTCACATCATTATAA+AGG | + | chr3.3:77608556-77608575 | MS.gene06594:intron | 25.0% |
| ! | GAATTACTTTATACCTTGTT+AGG | + | chr3.3:77609201-77609220 | MS.gene06594:intron | 25.0% |
| ! | TTAATTAGTTAGTTCCATGA+TGG | - | chr3.3:77609551-77609570 | None:intergenic | 25.0% |
| !!! | GAATTCTTGTATTTTTGTTC+TGG | + | chr3.3:77608296-77608315 | MS.gene06594:intron | 25.0% |
| AAATCAACAGATAACATCAG+AGG | - | chr3.3:77608784-77608803 | None:intergenic | 30.0% | |
| AATCAACAGATAACATCAGA+GGG | - | chr3.3:77608783-77608802 | None:intergenic | 30.0% | |
| ATAATGGCAAAACAAGAACA+AGG | + | chr3.3:77609370-77609389 | MS.gene06594:CDS | 30.0% | |
| CAGGTTCTTGTAAGTAAAAT+CGG | + | chr3.3:77608011-77608030 | MS.gene06594:intron | 30.0% | |
| CGTAGAGGAATTTAAACTAA+TGG | + | chr3.3:77608976-77608995 | MS.gene06594:intron | 30.0% | |
| TAATCTATGTTGCATAGGTA+CGG | - | chr3.3:77608331-77608350 | None:intergenic | 30.0% | |
| TACTATAAGATTCTACCTTG+AGG | - | chr3.3:77607876-77607895 | None:intergenic | 30.0% | |
| !! | AGAAAGTGTCACAAATTTCA+GGG | + | chr3.3:77608657-77608676 | MS.gene06594:intron | 30.0% |
| !!! | CTGTTTTCTGTTTTTTCCTT+AGG | + | chr3.3:77607770-77607789 | MS.gene06594:intron | 30.0% |
| AATCTATGTTGCATAGGTAC+GGG | - | chr3.3:77608330-77608349 | None:intergenic | 35.0% | |
| AGAACAAGGCATAGTACAAA+TGG | - | chr3.3:77607972-77607991 | None:intergenic | 35.0% | |
| AGAGACCTACGTTATATTTG+GGG | + | chr3.3:77609270-77609289 | MS.gene06594:CDS | 35.0% | |
| ATAACGTAGGTCTCTGAATT+TGG | - | chr3.3:77609265-77609284 | None:intergenic | 35.0% | |
| ATATGGAATCCGATGGAAAA+TGG | - | chr3.3:77607723-77607742 | None:intergenic | 35.0% | |
| ATCAGGTATATATCTGGTAC+AGG | - | chr3.3:77608044-77608063 | None:intergenic | 35.0% | |
| ATGCACATTGTGATTTCTCT+AGG | - | chr3.3:77608712-77608731 | None:intergenic | 35.0% | |
| CAGAGACCTACGTTATATTT+GGG | + | chr3.3:77609269-77609288 | MS.gene06594:CDS | 35.0% | |
| GGAGTTAAAGAATTAACGTC+GGG | - | chr3.3:77608415-77608434 | None:intergenic | 35.0% | |
| GGGAGTTAAAGAATTAACGT+CGG | - | chr3.3:77608416-77608435 | None:intergenic | 35.0% | |
| TATCGTACTTGGGTTTCTAT+TGG | + | chr3.3:77608075-77608094 | MS.gene06594:intron | 35.0% | |
| TCAGAGACCTACGTTATATT+TGG | + | chr3.3:77609268-77609287 | MS.gene06594:CDS | 35.0% | |
| ! | AAGTCCAAAGTGCTATCAAA+TGG | + | chr3.3:77609022-77609041 | MS.gene06594:intron | 35.0% |
| ! | GCAAAGTGCAATGCTAATTT+TGG | + | chr3.3:77608627-77608646 | MS.gene06594:intron | 35.0% |
| ! | TCAGGTTTTCCATTTTCCAT+CGG | + | chr3.3:77607711-77607730 | MS.gene06594:intron | 35.0% |
| !! | CAGAAAGTGTCACAAATTTC+AGG | + | chr3.3:77608656-77608675 | MS.gene06594:intron | 35.0% |
| !! | TCTAGGTCAAAAAGCACTAT+AGG | - | chr3.3:77608695-77608714 | None:intergenic | 35.0% |
| !!! | TTTTTTGGACTTCGAGATGT+AGG | + | chr3.3:77608806-77608825 | MS.gene06594:intron | 35.0% |
| AAATGGAAAACCTGAGGAAG+TGG | - | chr3.3:77607706-77607725 | None:intergenic | 40.0% | |
| AAGGCTCTCAAAACTCACAA+TGG | + | chr3.3:77609511-77609530 | MS.gene06594:CDS | 40.0% | |
| ACCCAAGTACGATACACATA+CGG | - | chr3.3:77608069-77608088 | None:intergenic | 40.0% | |
| ACCCTAGTAACACCATCAAT+GGG | - | chr3.3:77608905-77608924 | None:intergenic | 40.0% | |
| ACGGGTATCAGGTATATATC+TGG | - | chr3.3:77608050-77608069 | None:intergenic | 40.0% | |
| AGGCTCTCAAAACTCACAAT+GGG | + | chr3.3:77609512-77609531 | MS.gene06594:CDS | 40.0% | |
| ATTTGGGGAGGCAAAAATAG+AGG | + | chr3.3:77609285-77609304 | MS.gene06594:CDS | 40.0% | |
| CACGTTCTTTCTGTGATCTA+TGG | + | chr3.3:77609157-77609176 | MS.gene06594:intron | 40.0% | |
| CGAAAAGCAATGTTGAAGCT+GGG | + | chr3.3:77608872-77608891 | MS.gene06594:CDS | 40.0% | |
| CTGTTGTCAAATAGACGTAG+AGG | + | chr3.3:77608961-77608980 | MS.gene06594:intron | 40.0% | |
| GATGGAAAATGGAAAACCTG+AGG | - | chr3.3:77607712-77607731 | None:intergenic | 40.0% | |
| GCCAGATATGGGATCTATAA+TGG | + | chr3.3:77609354-77609373 | MS.gene06594:CDS | 40.0% | |
| GCCATTATAGATCCCATATC+TGG | - | chr3.3:77609358-77609377 | None:intergenic | 40.0% | |
| GCTATTGTCATGTAGCACAA+TGG | + | chr3.3:77609056-77609075 | MS.gene06594:intron | 40.0% | |
| GTTCTTTCTGTGATCTATGG+TGG | + | chr3.3:77609160-77609179 | MS.gene06594:intron | 40.0% | |
| TACCCTAGTAACACCATCAA+TGG | - | chr3.3:77608906-77608925 | None:intergenic | 40.0% | |
| TCGAAAAGCAATGTTGAAGC+TGG | + | chr3.3:77608871-77608890 | MS.gene06594:CDS | 40.0% | |
| TCGTTATCATCCTCGACAAT+AGG | - | chr3.3:77607810-77607829 | None:intergenic | 40.0% | |
| TTTGGACTCTTGAAGACATC+AGG | - | chr3.3:77609247-77609266 | None:intergenic | 40.0% | |
| ! | AGAGGGTACATGTAAAACTC+AGG | + | chr3.3:77607992-77608011 | MS.gene06594:intron | 40.0% |
| ! | GATGCCATTTGATAGCACTT+TGG | - | chr3.3:77609029-77609048 | None:intergenic | 40.0% |
| ! | GTACTATGCCTTGTTCTAGA+GGG | + | chr3.3:77607975-77607994 | MS.gene06594:intron | 40.0% |
| ! | TGTACTATGCCTTGTTCTAG+AGG | + | chr3.3:77607974-77607993 | MS.gene06594:intron | 40.0% |
| !! | AACCCATTGATGGTGTTACT+AGG | + | chr3.3:77608900-77608919 | MS.gene06594:CDS | 40.0% |
| !! | ACCCATTGATGGTGTTACTA+GGG | + | chr3.3:77608901-77608920 | MS.gene06594:CDS | 40.0% |
| !! | TACATGTACCCTCTAGAACA+AGG | - | chr3.3:77607986-77608005 | None:intergenic | 40.0% |
| ACAGTTCAGGATGCCAGATA+TGG | + | chr3.3:77609342-77609361 | MS.gene06594:CDS | 45.0% | |
| ACCCGTATGTGTATCGTACT+TGG | + | chr3.3:77608064-77608083 | MS.gene06594:intron | 45.0% | |
| ACGATACACATACGGGTATC+AGG | - | chr3.3:77608061-77608080 | None:intergenic | 45.0% | |
| ACTCACAATGGGGACATTGT+TGG | + | chr3.3:77609523-77609542 | MS.gene06594:CDS | 45.0% | |
| AGATGATGCTCCTATTGTCG+AGG | + | chr3.3:77607797-77607816 | MS.gene06594:CDS | 45.0% | |
| ATTGACACGTGTCGAACAAC+GGG | - | chr3.3:77608391-77608410 | None:intergenic | 45.0% | |
| CAAGAACAAACCACTTCCTC+AGG | + | chr3.3:77607693-77607712 | MS.gene06594:CDS | 45.0% | |
| CAGTTCAGGATGCCAGATAT+GGG | + | chr3.3:77609343-77609362 | MS.gene06594:CDS | 45.0% | |
| CATTACCAGCTCAATGTCGT+GGG | - | chr3.3:77609458-77609477 | None:intergenic | 45.0% | |
| CATTGACACGTGTCGAACAA+CGG | - | chr3.3:77608392-77608411 | None:intergenic | 45.0% | |
| CCCAAGTACGATACACATAC+GGG | - | chr3.3:77608068-77608087 | None:intergenic | 45.0% | |
| CCCGTATGTGTATCGTACTT+GGG | + | chr3.3:77608065-77608084 | MS.gene06594:intron | 45.0% | |
| CTGGGACTAAAACCCATTGA+TGG | + | chr3.3:77608890-77608909 | MS.gene06594:CDS | 45.0% | |
| GACCTACGTTATATTTGGGG+AGG | + | chr3.3:77609273-77609292 | MS.gene06594:CDS | 45.0% | |
| GGCTCTCAAAACTCACAATG+GGG | + | chr3.3:77609513-77609532 | MS.gene06594:CDS | 45.0% | |
| TCACGAATCGCGAAAGATAG+TGG | - | chr3.3:77609094-77609113 | None:intergenic | 45.0% | |
| TCATTACCAGCTCAATGTCG+TGG | - | chr3.3:77609459-77609478 | None:intergenic | 45.0% | |
| TGACGACAAAGACGAATCTG+AGG | + | chr3.3:77607830-77607849 | MS.gene06594:CDS | 45.0% | |
| TGCCTCCCCAAATATAACGT+AGG | - | chr3.3:77609278-77609297 | None:intergenic | 45.0% | |
| TGTCTGTGTCATGTTGCTGT+CGG | + | chr3.3:77608465-77608484 | MS.gene06594:intron | 45.0% | |
| TTTGGACTTCGAGATGTAGG+TGG | + | chr3.3:77608809-77608828 | MS.gene06594:intron | 45.0% | |
| ! | AGCTGGTAATGACACAAGCT+GGG | + | chr3.3:77609467-77609486 | MS.gene06594:CDS | 45.0% |
| ! | GGAGCATCATCTTCTTCCTA+AGG | - | chr3.3:77607789-77607808 | None:intergenic | 45.0% |
| ! | TCAGAGGGCACACATGTATA+TGG | - | chr3.3:77608768-77608787 | None:intergenic | 45.0% |
| !! | GAAGAGGAGGTTGATGAAAC+TGG | + | chr3.3:77609424-77609443 | MS.gene06594:CDS | 45.0% |
| !! | TCTGTGATCTATGGTGGATG+AGG | + | chr3.3:77609166-77609185 | MS.gene06594:intron | 45.0% |
| CACAAGCTGCTCAACAGTTC+AGG | + | chr3.3:77609329-77609348 | MS.gene06594:CDS | 50.0% | |
| GAAGACGACGAATCTCCTCA+AGG | + | chr3.3:77607858-77607877 | MS.gene06594:CDS | 50.0% | |
| GTCAAAAGCCAAGGCTGTCA+AGG | + | chr3.3:77609492-77609511 | MS.gene06594:CDS | 50.0% | |
| GTCATGTTGCTGTCGGACAT+TGG | + | chr3.3:77608472-77608491 | MS.gene06594:intron | 50.0% | |
| TCAACCTCCTCTTCCTCTTC+AGG | - | chr3.3:77609418-77609437 | None:intergenic | 50.0% | |
| TTCGCGATTCGTGATCGACA+AGG | + | chr3.3:77609100-77609119 | MS.gene06594:intron | 50.0% | |
| TTTGAGAGCCTTGACAGCCT+TGG | - | chr3.3:77609503-77609522 | None:intergenic | 50.0% | |
| ! | CGAGATGTAGGTGGTACTGA+AGG | + | chr3.3:77608818-77608837 | MS.gene06594:intron | 50.0% |
| ! | CTTGAGCGTTGTTTCGTCGA+CGG | - | chr3.3:77607677-77607696 | None:intergenic | 50.0% |
| ! | GAGCTGGTAATGACACAAGC+TGG | + | chr3.3:77609466-77609485 | MS.gene06594:CDS | 50.0% |
| ! | GCTGGTAATGACACAAGCTG+GGG | + | chr3.3:77609468-77609487 | MS.gene06594:CDS | 50.0% |
| !! | GGACATTGTTGGTGCCATCA+TGG | + | chr3.3:77609534-77609553 | MS.gene06594:CDS | 50.0% |
| !! | GTGATCTATGGTGGATGAGG+AGG | + | chr3.3:77609169-77609188 | MS.gene06594:intron | 50.0% |
| ACAGCCTGAAGAGGAAGAGG+AGG | + | chr3.3:77609411-77609430 | MS.gene06594:CDS | 55.0% | |
| AGCACAGCCTGAAGAGGAAG+AGG | + | chr3.3:77609408-77609427 | MS.gene06594:CDS | 55.0% | |
| GACGGAGGGAAGTTGTTGGT+CGG | - | chr3.3:77607659-77607678 | None:intergenic | 55.0% | |
| GTGTCTGCAACTGAGAGCTC+AGG | - | chr3.3:77609312-77609331 | None:intergenic | 55.0% | |
| GTTGCTGTCGGACATTGGCA+CGG | + | chr3.3:77608477-77608496 | MS.gene06594:intron | 55.0% | |
| TGATGGAGCACAGCCTGAAG+AGG | + | chr3.3:77609402-77609421 | MS.gene06594:CDS | 55.0% | |
| TTGTTGGTCGGTGGCTTCGT+CGG | - | chr3.3:77607647-77607666 | None:intergenic | 55.0% | |
| ! | AGCGTTGTTTCGTCGACGGA+GGG | - | chr3.3:77607673-77607692 | None:intergenic | 55.0% |
| ! | AGCTGGGGTGTCAAAAGCCA+AGG | + | chr3.3:77609483-77609502 | MS.gene06594:CDS | 55.0% |
| !! | GAACAAGGTGCTGCAGCTGA+TGG | + | chr3.3:77609385-77609404 | MS.gene06594:CDS | 55.0% |
| !! | GGAGGTTGATGAAACTGGCG+TGG | + | chr3.3:77609429-77609448 | MS.gene06594:CDS | 55.0% |
| !! | GGTTGATGAAACTGGCGTGG+AGG | + | chr3.3:77609432-77609451 | MS.gene06594:CDS | 55.0% |
| CGTCGACGGAGGGAAGTTGT+TGG | - | chr3.3:77607663-77607682 | None:intergenic | 60.0% | |
| GGAGGGAAGTTGTTGGTCGG+TGG | - | chr3.3:77607656-77607675 | None:intergenic | 60.0% | |
| TCGGCGGCAGCGTCAATGAT+GGG | - | chr3.3:77607628-77607647 | None:intergenic | 60.0% | |
| ! | GAGCGTTGTTTCGTCGACGG+AGG | - | chr3.3:77607674-77607693 | None:intergenic | 60.0% |
| ! | GCAGCGTCAATGATGGGACC+TGG | - | chr3.3:77607622-77607641 | None:intergenic | 60.0% |
| GGAGGCCCACGACATTGAGC+TGG | + | chr3.3:77609450-77609469 | MS.gene06594:CDS | 65.0% | |
| GTCGGCGGCAGCGTCAATGA+TGG | - | chr3.3:77607629-77607648 | None:intergenic | 65.0% | |
| TTGGTCGGTGGCTTCGTCGG+CGG | - | chr3.3:77607644-77607663 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 77607613 | 77609570 | 77607613 | ID=MS.gene06594 |
| chr3.3 | mRNA | 77607613 | 77609570 | 77607613 | ID=MS.gene06594.t1;Parent=MS.gene06594 |
| chr3.3 | exon | 77607613 | 77607714 | 77607613 | ID=MS.gene06594.t1.exon1;Parent=MS.gene06594.t1 |
| chr3.3 | CDS | 77607613 | 77607714 | 77607613 | ID=cds.MS.gene06594.t1;Parent=MS.gene06594.t1 |
| chr3.3 | exon | 77607792 | 77607879 | 77607792 | ID=MS.gene06594.t1.exon2;Parent=MS.gene06594.t1 |
| chr3.3 | CDS | 77607792 | 77607879 | 77607792 | ID=cds.MS.gene06594.t1;Parent=MS.gene06594.t1 |
| chr3.3 | exon | 77608828 | 77608946 | 77608828 | ID=MS.gene06594.t1.exon3;Parent=MS.gene06594.t1 |
| chr3.3 | CDS | 77608828 | 77608946 | 77608828 | ID=cds.MS.gene06594.t1;Parent=MS.gene06594.t1 |
| chr3.3 | exon | 77609223 | 77609570 | 77609223 | ID=MS.gene06594.t1.exon4;Parent=MS.gene06594.t1 |
| chr3.3 | CDS | 77609223 | 77609570 | 77609223 | ID=cds.MS.gene06594.t1;Parent=MS.gene06594.t1 |
| Gene Sequence |
| Protein sequence |
