AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25890.t1 MTR_3g078860 96.947 262 8 0 1 262 1 262 0.0 533
MS.gene25890.t1 MTR_1g048990 49.115 226 98 3 43 252 51 275 3.95e-67 211
MS.gene25890.t1 MTR_1g048990 48.128 187 80 3 43 213 51 236 3.12e-50 165
MS.gene25890.t1 MTR_3g094250 31.897 232 141 8 20 243 7 229 2.91e-29 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25890.t1 AT5G23310 66.541 266 82 2 1 262 1 263 1.01e-130 370
MS.gene25890.t1 AT5G51100 50.435 230 95 4 33 245 36 263 4.73e-76 233
MS.gene25890.t1 AT5G51100 48.696 230 90 5 33 245 36 254 1.43e-69 216
MS.gene25890.t1 AT4G25100 50.704 213 100 3 39 250 1 209 5.66e-68 209
MS.gene25890.t1 AT4G25100 50.704 213 100 3 39 250 1 209 5.66e-68 209
MS.gene25890.t1 AT4G25100 50.704 213 100 3 39 250 1 209 5.66e-68 209
MS.gene25890.t1 AT4G25100 50.704 213 100 3 39 250 1 209 5.66e-68 209
MS.gene25890.t1 AT5G51100 50.761 197 79 3 65 245 1 195 2.68e-66 206
MS.gene25890.t1 AT5G51100 50.761 197 79 3 65 245 1 195 2.68e-66 206
MS.gene25890.t1 AT4G25100 49.733 187 89 3 65 250 1 183 2.72e-57 181
MS.gene25890.t1 AT5G51100 50.538 186 73 4 33 201 36 219 6.57e-57 182
MS.gene25890.t1 AT5G51100 50.538 186 73 4 33 201 36 219 6.57e-57 182
MS.gene25890.t1 AT3G10920 33.036 224 130 8 32 243 9 224 2.27e-30 113
MS.gene25890.t1 AT3G10920 32.589 224 130 9 32 243 9 223 5.54e-28 107
MS.gene25890.t1 AT3G56350 34.409 186 98 5 55 228 42 215 1.15e-26 104

Find 67 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAGATTGAAAAGGATTT+TGG 0.090800 3.2:-69623453 MS.gene25890:CDS
GGGAAGGATGATATACTTTA+TGG 0.140754 3.2:-69624264 MS.gene25890:CDS
CGTGCAGCCAATATTCAATT+TGG 0.180074 3.2:-69622770 MS.gene25890:intron
TTTGGAATCATGACTTCTTC+TGG 0.232976 3.2:-69623524 MS.gene25890:CDS
TGGAATAGGGTTTAAGTAAC+AGG 0.279125 3.2:+69625485 None:intergenic
GCACTTACATTGTTTGGTTC+TGG 0.289790 3.2:-69623393 MS.gene25890:CDS
GAAGCTGCACTTACATTGTT+TGG 0.294047 3.2:-69623399 MS.gene25890:CDS
CACAAATCCAAATTGAATAT+TGG 0.316675 3.2:+69622763 None:intergenic
TTACATTGTTTGGTTCTGGC+TGG 0.329309 3.2:-69623389 MS.gene25890:CDS
GGAGGTGATATGCCCATTCT+AGG 0.347578 3.2:-69623483 MS.gene25890:CDS
ACTATATCACCCCACACAAT+TGG 0.353385 3.2:+69622863 None:intergenic
TGTTTGGTTCTGGCTGGGTT+TGG 0.376067 3.2:-69623383 MS.gene25890:CDS
AGACGAGAGCTAGTTGGAAT+AGG 0.389477 3.2:+69625471 None:intergenic
TTGGAATCATGACTTCTTCT+GGG 0.399356 3.2:-69623523 MS.gene25890:CDS
AATGCAGCATGCATACTATC+TGG 0.401361 3.2:-69622626 MS.gene25890:intron
AATATTCAATTTGGATTTGT+GGG 0.402335 3.2:-69622761 MS.gene25890:CDS
GACGAGAGCTAGTTGGAATA+GGG 0.406364 3.2:+69625472 None:intergenic
ACCCCACACAATTGGGCAAA+TGG 0.409488 3.2:+69622871 None:intergenic
TTCTGAACCACCTTGTGTCT+TGG 0.411846 3.2:-69622486 MS.gene25890:CDS
CTTCTGGGAATCCATGCAAC+CGG 0.415502 3.2:-69623508 MS.gene25890:CDS
ATTGTCTGCTTGCTCAAATA+TGG 0.433157 3.2:+69624345 None:intergenic
TACATTGTTTGGTTCTGGCT+GGG 0.439690 3.2:-69623388 MS.gene25890:CDS
TTTACCCTGTGAAGAAGCTT+AGG 0.443807 3.2:+69625414 None:intergenic
CAATATTCAATTTGGATTTG+TGG 0.448288 3.2:-69622762 MS.gene25890:CDS
CTATATCACCCCACACAATT+GGG 0.451922 3.2:+69622864 None:intergenic
AGCAGACAATCGACATGCAC+TGG 0.468183 3.2:-69624332 MS.gene25890:CDS
AAGGTTTGAACGAACAGCTT+GGG 0.470005 3.2:-69624284 MS.gene25890:CDS
AGATTCCTAAGCTTCTTCAC+AGG 0.484788 3.2:-69625419 MS.gene25890:CDS
ATCACCTCCTCCCGGTTGCA+TGG 0.486059 3.2:+69623497 None:intergenic
CTGTTGAAGGAGACCTAGAA+TGG 0.488189 3.2:+69623470 None:intergenic
TCTCCTTCAACAGATTGAAA+AGG 0.504146 3.2:-69623460 MS.gene25890:CDS
CTGCAACGGAACGCTTGACA+TGG 0.509366 3.2:-69622459 MS.gene25890:CDS
CACTTACATGTTCGTAGGGA+GGG 0.519044 3.2:+69624774 None:intergenic
GAAGGTTTGAACGAACAGCT+TGG 0.524067 3.2:-69624285 MS.gene25890:CDS
TGCACTGGGGAGAGCATCAT+CGG 0.535998 3.2:-69624317 MS.gene25890:CDS
TGGTACACTTACATGTTCGT+AGG 0.546092 3.2:+69624769 None:intergenic
TATACTTTATGGTTACACCT+TGG 0.547554 3.2:-69624253 MS.gene25890:CDS
TGCCATTTGCCCAATTGTGT+GGG 0.548387 3.2:-69622873 MS.gene25890:CDS
CACTTTGACTAGTTCATCCA+AGG 0.548426 3.2:+69624236 None:intergenic
TTCTGGGAATCCATGCAACC+GGG 0.558653 3.2:-69623507 MS.gene25890:CDS
GAATCCATGCAACCGGGAGG+AGG 0.560022 3.2:-69623501 MS.gene25890:CDS
GCAGACAATCGACATGCACT+GGG 0.561935 3.2:-69624331 MS.gene25890:CDS
ATGCCATTTGCCCAATTGTG+TGG 0.565068 3.2:-69622874 MS.gene25890:CDS
TGCATACTATCTGGATTACA+AGG 0.567151 3.2:-69622617 MS.gene25890:intron
ACTTACATGTTCGTAGGGAG+GGG 0.579268 3.2:+69624775 None:intergenic
TGTGTCTTGGAATGCTGCAA+CGG 0.582003 3.2:-69622473 MS.gene25890:CDS
GGAACGCTTGACATGGGGAG+AGG 0.586433 3.2:-69622452 MS.gene25890:CDS
GATTCCTAAGCTTCTTCACA+GGG 0.589975 3.2:-69625418 MS.gene25890:intron
TGCAACGGAACGCTTGACAT+GGG 0.591829 3.2:-69622458 MS.gene25890:CDS
GGTACACTTACATGTTCGTA+GGG 0.593745 3.2:+69624770 None:intergenic
GAAATGAGACGAGAGCTAGT+TGG 0.595195 3.2:+69625465 None:intergenic
GCATTGTTGAACTCAGGTGA+GGG 0.599120 3.2:+69624195 None:intergenic
TGTTGAAGGAGACCTAGAAT+GGG 0.600044 3.2:+69623471 None:intergenic
TGCATTGTTGAACTCAGGTG+AGG 0.604713 3.2:+69624194 None:intergenic
TCAGCTGCATTGTTGAACTC+AGG 0.612280 3.2:+69624189 None:intergenic
TGAGTTCAACAATGCAGCTG+AGG 0.616915 3.2:-69624187 MS.gene25890:intron
ATTCAATTTGGATTTGTGGG+AGG 0.617816 3.2:-69622758 MS.gene25890:intron
TTTGAACGAACAGCTTGGGA+AGG 0.619243 3.2:-69624280 MS.gene25890:CDS
ATGGGCATATCACCTCCTCC+CGG 0.633695 3.2:+69623489 None:intergenic
GCAACGGAACGCTTGACATG+GGG 0.640768 3.2:-69622457 MS.gene25890:CDS
CAGCATTCCAAGACACAAGG+TGG 0.656423 3.2:+69622479 None:intergenic
ACACTTACATGTTCGTAGGG+AGG 0.658707 3.2:+69624773 None:intergenic
GTCAAAGTGACATACAACAA+TGG 0.665004 3.2:-69624222 MS.gene25890:CDS
TTGCAGCATTCCAAGACACA+AGG 0.678422 3.2:+69622476 None:intergenic
GCCATTTGCCCAATTGTGTG+GGG 0.687217 3.2:-69622872 MS.gene25890:CDS
TGGGAATCCATGCAACCGGG+AGG 0.708383 3.2:-69623504 MS.gene25890:CDS
CAGACAATCGACATGCACTG+GGG 0.790084 3.2:-69624330 MS.gene25890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAGTAAAAGTTAAA+TGG + chr3.2:69622551-69622570 None:intergenic 10.0%
!! GTATATTACATAATAAAATT+AGG - chr3.2:69623839-69623858 MS.gene25890:intron 10.0%
!! AATGTTTGACTATTAAAATT+TGG - chr3.2:69622717-69622736 MS.gene25890:intron 15.0%
!! ATATATTACAACTGAAAATT+GGG + chr3.2:69622581-69622600 None:intergenic 15.0%
!! TTCTTTCTTTATCATTATAT+TGG + chr3.2:69623327-69623346 None:intergenic 15.0%
!!! ATCATTATATTGGTTAAAAT+CGG + chr3.2:69623317-69623336 None:intergenic 15.0%
!!! TATGACTAAATACATTTTTA+TGG + chr3.2:69623952-69623971 None:intergenic 15.0%
!!! TATTATTGCATTGATAAATA+TGG - chr3.2:69622680-69622699 MS.gene25890:intron 15.0%
!!! TTCAACAAATGATTTTTATT+TGG - chr3.2:69624109-69624128 MS.gene25890:intron 15.0%
!! AAGTAATGATTAATAATCAC+AGG - chr3.2:69622758-69622777 MS.gene25890:intron 20.0%
!! AATATTCAATTTGGATTTGT+GGG - chr3.2:69625142-69625161 MS.gene25890:intron 20.0%
!! AATTCAGAAAAACAAAATCT+TGG + chr3.2:69624715-69624734 None:intergenic 20.0%
!! CAATAACAAAATTACAATTG+TGG - chr3.2:69624281-69624300 MS.gene25890:CDS 20.0%
!! CATATATTACAACTGAAAAT+TGG + chr3.2:69622582-69622601 None:intergenic 20.0%
!! GCATATTAAGAAGATAATAT+GGG + chr3.2:69624623-69624642 None:intergenic 20.0%
!! TATATCTTCAATCAAAAACA+TGG + chr3.2:69623175-69623194 None:intergenic 20.0%
!! TTAATATGCCATAAAATCAT+TGG - chr3.2:69624634-69624653 MS.gene25890:intron 20.0%
!! TTATTAATGACACGTAAAAA+TGG + chr3.2:69624071-69624090 None:intergenic 20.0%
!!! ATTTACATATTTTATGCTTG+AGG - chr3.2:69624766-69624785 MS.gene25890:intron 20.0%
!!! CTACTCAATTTTTTATGTTA+AGG + chr3.2:69622855-69622874 None:intergenic 20.0%
!!! GACAGATTTTATATAATGAA+GGG + chr3.2:69625076-69625095 None:intergenic 20.0%
!!! TACATTTTTGAGTTTGTTAA+AGG + chr3.2:69623474-69623493 None:intergenic 20.0%
!!! TGATCTTTTAAAGTTGATTA+TGG - chr3.2:69623767-69623786 MS.gene25890:intron 20.0%
!!! TTTGAAACTATATCAATGTA+AGG - chr3.2:69623996-69624015 MS.gene25890:intron 20.0%
! AAACATTTGCAACAATCAAT+CGG + chr3.2:69624953-69624972 None:intergenic 25.0%
! AAATAAGCGATGATATATGA+TGG + chr3.2:69625319-69625338 None:intergenic 25.0%
! AAATTGAGTAGAGTCATTAA+AGG - chr3.2:69622864-69622883 MS.gene25890:intron 25.0%
! AACTGTTTAATCTTTCTTGA+AGG - chr3.2:69622647-69622666 MS.gene25890:intron 25.0%
! AAGTTAGAATCATGATATGA+AGG + chr3.2:69623502-69623521 None:intergenic 25.0%
! AATAAAAAAAAAGGGCAACT+TGG + chr3.2:69624926-69624945 None:intergenic 25.0%
! ATAAATGAATACTCTTTCTG+TGG - chr3.2:69624030-69624049 MS.gene25890:intron 25.0%
! ATGTCTTTAATTGTAGAATG+TGG - chr3.2:69623972-69623991 MS.gene25890:intron 25.0%
! CAATATTCAATTTGGATTTG+TGG - chr3.2:69625141-69625160 MS.gene25890:intron 25.0%
! CACAAATCCAAATTGAATAT+TGG + chr3.2:69625143-69625162 None:intergenic 25.0%
! CTCCATTTCAAATTTCAAAT+AGG + chr3.2:69625098-69625117 None:intergenic 25.0%
! GGCATATTAAGAAGATAATA+TGG + chr3.2:69624624-69624643 None:intergenic 25.0%
! TAATTGAAGGATCAACAAAA+AGG + chr3.2:69623444-69623463 None:intergenic 25.0%
! TGTCTTTAATTGTAGAATGT+GGG - chr3.2:69623973-69623992 MS.gene25890:intron 25.0%
! TTCAACTAATCCAAGTATAT+AGG + chr3.2:69623207-69623226 None:intergenic 25.0%
! TTCAATCAAAAACATGGATT+CGG + chr3.2:69623169-69623188 None:intergenic 25.0%
! TTGTATTTAAGCAGAAAAAG+AGG - chr3.2:69623053-69623072 MS.gene25890:intron 25.0%
! TTTCTGCTTAAATACAATTG+AGG + chr3.2:69623050-69623069 None:intergenic 25.0%
!! AAACAGTTTTACTTTAGTGT+CGG + chr3.2:69622635-69622654 None:intergenic 25.0%
!! AATCATTTGTTGAAGAAACA+AGG + chr3.2:69624103-69624122 None:intergenic 25.0%
!! GGACAGATTTTATATAATGA+AGG + chr3.2:69625077-69625096 None:intergenic 25.0%
!! GTCCTATTTGAAATTTGAAA+TGG - chr3.2:69625093-69625112 MS.gene25890:intron 25.0%
!! TCAAAAGTTACAGCATTTTA+TGG - chr3.2:69623097-69623116 MS.gene25890:intron 25.0%
!! TTGAATTTTGTAGATAAGTC+TGG + chr3.2:69622465-69622484 None:intergenic 25.0%
!! TTTGTTGCTTCAATATTCAT+AGG - chr3.2:69623524-69623543 MS.gene25890:CDS 25.0%
!!! AATTCTCATTTTTATCTCAC+TGG - chr3.2:69624739-69624758 MS.gene25890:intron 25.0%
!!! ACTGTTTTAACCTATATACT+TGG - chr3.2:69623194-69623213 MS.gene25890:intron 25.0%
!!! ATTCTCATTTTTATCTCACT+GGG - chr3.2:69624740-69624759 MS.gene25890:intron 25.0%
!!! GCAATTTTTTTTCTGATTTG+TGG - chr3.2:69623011-69623030 MS.gene25890:intron 25.0%
!!! TTTTTGAGTTTGTTAAAGGT+TGG + chr3.2:69623470-69623489 None:intergenic 25.0%
AAAACATTAGTGATCGACAA+AGG - chr3.2:69623360-69623379 MS.gene25890:intron 30.0%
AAACATTAGTGATCGACAAA+GGG - chr3.2:69623361-69623380 MS.gene25890:intron 30.0%
ACCTTATTGTTTGATATTGC+CGG - chr3.2:69624888-69624907 MS.gene25890:intron 30.0%
ATAGCAACAACCTTTATGTT+AGG - chr3.2:69625229-69625248 MS.gene25890:intron 30.0%
ATCGGCAGCAATAAAAAAAA+AGG + chr3.2:69624935-69624954 None:intergenic 30.0%
ATTTGGACTTTAACACTACT+AGG - chr3.2:69622734-69622753 MS.gene25890:intron 30.0%
CCAAAAATATCTACATCACA+TGG + chr3.2:69624236-69624255 None:intergenic 30.0%
CGGAAGAGGAAAAAATAATT+AGG + chr3.2:69624354-69624373 None:intergenic 30.0%
GAAACTATATCAATGTAAGG+TGG - chr3.2:69623999-69624018 MS.gene25890:intron 30.0%
GATTTATTCTCTATGGTAAG+TGG - chr3.2:69622989-69623008 MS.gene25890:intron 30.0%
GTCAAGTGATTTATTCTCTA+TGG - chr3.2:69622982-69623001 MS.gene25890:intron 30.0%
TAAAGGTTGGACTTAATTGA+AGG + chr3.2:69623457-69623476 None:intergenic 30.0%
TATACTTTATGGTTACACCT+TGG - chr3.2:69623650-69623669 MS.gene25890:intron 30.0%
TCAATCAAAAACATGGATTC+GGG + chr3.2:69623168-69623187 None:intergenic 30.0%
TCGGCAGCAATAAAAAAAAA+GGG + chr3.2:69624934-69624953 None:intergenic 30.0%
TGATTGTTGCAAATGTTTGT+TGG - chr3.2:69624955-69624974 MS.gene25890:intron 30.0%
TTTAAGCAGAAAAAGAGGTT+TGG - chr3.2:69623058-69623077 MS.gene25890:intron 30.0%
TTTGGACTTTAACACTACTA+GGG - chr3.2:69622735-69622754 MS.gene25890:intron 30.0%
! AATCCTTTTCAATCTGTTGA+AGG + chr3.2:69624449-69624468 None:intergenic 30.0%
! AGAGAAGTCCAATGATTTTA+TGG + chr3.2:69624645-69624664 None:intergenic 30.0%
! CAACAGATTGAAAAGGATTT+TGG - chr3.2:69624450-69624469 MS.gene25890:intron 30.0%
! CCATGTGATGTAGATATTTT+TGG - chr3.2:69624233-69624252 MS.gene25890:CDS 30.0%
! GCATTTTGAATAGGTTTATG+TGG + chr3.2:69623813-69623832 None:intergenic 30.0%
!! GGCATTTGAAGTTTTAACAA+TGG + chr3.2:69625014-69625033 None:intergenic 30.0%
!! GTGGTTTAGTTCTACAATAA+TGG - chr3.2:69624813-69624832 MS.gene25890:CDS 30.0%
!! TACACTGAAGCATTTTGAAT+AGG + chr3.2:69623822-69623841 None:intergenic 30.0%
!! TTTCTAAAACAAGTAGTCCA+CGG + chr3.2:69622935-69622954 None:intergenic 30.0%
!!! TTATTTTTTCCTCTTCCGAA+AGG - chr3.2:69624356-69624375 MS.gene25890:CDS 30.0%
AAATATGACGATGCAACGTA+TGG + chr3.2:69623264-69623283 None:intergenic 35.0%
AAGGGGGAATCAATTAGAAA+AGG + chr3.2:69624559-69624578 None:intergenic 35.0%
AATATCTACATCACATGGAC+TGG + chr3.2:69624231-69624250 None:intergenic 35.0%
AATGAGTTTCATTTATGCCG+TGG - chr3.2:69622915-69622934 MS.gene25890:CDS 35.0%
ACAAGTTTCCGGTTATGAAT+GGG + chr3.2:69623902-69623921 None:intergenic 35.0%
ACGCCAATATTATCAACACT+TGG + chr3.2:69623875-69623894 None:intergenic 35.0%
AGTCATGATTCCAAACCTTT+CGG + chr3.2:69624374-69624393 None:intergenic 35.0%
ATATCTACATCACATGGACT+GGG + chr3.2:69624230-69624249 None:intergenic 35.0%
ATGAACAGCAACAAAAGCAA+TGG + chr3.2:69623412-69623431 None:intergenic 35.0%
ATTCAATTTGGATTTGTGGG+AGG - chr3.2:69625145-69625164 MS.gene25890:intron 35.0%
ATTGTCTGCTTGCTCAAATA+TGG + chr3.2:69623561-69623580 None:intergenic 35.0%
CGCCAATATTATCAACACTT+GGG + chr3.2:69623874-69623893 None:intergenic 35.0%
CTGCTTAAATACAATTGAGG+AGG + chr3.2:69623047-69623066 None:intergenic 35.0%
GGGAAGGATGATATACTTTA+TGG - chr3.2:69623639-69623658 MS.gene25890:intron 35.0%
GTCAAAGTGACATACAACAA+TGG - chr3.2:69623681-69623700 MS.gene25890:intron 35.0%
GTCAATGATGCCTAACATAA+AGG + chr3.2:69625242-69625261 None:intergenic 35.0%
TCTCCTTCAACAGATTGAAA+AGG - chr3.2:69624443-69624462 MS.gene25890:intron 35.0%
TGCATACTATCTGGATTACA+AGG - chr3.2:69625286-69625305 MS.gene25890:intron 35.0%
TGGAATAGGGTTTAAGTAAC+AGG + chr3.2:69622421-69622440 None:intergenic 35.0%
TTGAAGGATCAACAAAAAGG+AGG + chr3.2:69623441-69623460 None:intergenic 35.0%
TTGGAATCATGACTTCTTCT+GGG - chr3.2:69624380-69624399 MS.gene25890:intron 35.0%
TTTCCAATTTCATGCAAGCT+AGG + chr3.2:69624149-69624168 None:intergenic 35.0%
! ATAGTTCTACACAACAGTCT+GGG + chr3.2:69624843-69624862 None:intergenic 35.0%
! CATCATCGGAATTTTGTTGA+AGG - chr3.2:69623600-69623619 MS.gene25890:intron 35.0%
! GTAAAAATGGAAAAGAGTGC+AGG + chr3.2:69624058-69624077 None:intergenic 35.0%
! GTCACTTGTCTTTTGTCATT+TGG - chr3.2:69624791-69624810 MS.gene25890:CDS 35.0%
! TTACCTAGCTTGCATGAAAT+TGG - chr3.2:69624143-69624162 MS.gene25890:intron 35.0%
! TTTGGAATCATGACTTCTTC+TGG - chr3.2:69624379-69624398 MS.gene25890:intron 35.0%
!! ACTTGTCTTTTGTCATTTGG+TGG - chr3.2:69624794-69624813 MS.gene25890:CDS 35.0%
!! CTCCCAAGTGTTGATAATAT+TGG - chr3.2:69623869-69623888 MS.gene25890:intron 35.0%
!! GCTGTAACTTTTGAAGATCT+GGG + chr3.2:69623091-69623110 None:intergenic 35.0%
!! TGCTGTAACTTTTGAAGATC+TGG + chr3.2:69623092-69623111 None:intergenic 35.0%
!!! AGATATTTTTGGCTGTTCGT+CGG - chr3.2:69624244-69624263 MS.gene25890:CDS 35.0%
!!! CTTGTGTTGTTTTGTGTTGT+AGG + chr3.2:69625189-69625208 None:intergenic 35.0%
AAGGTTTGAACGAACAGCTT+GGG - chr3.2:69623619-69623638 MS.gene25890:intron 40.0%
AATGCAGCATGCATACTATC+TGG - chr3.2:69625277-69625296 MS.gene25890:intron 40.0%
ACACATCACTTTAGCAAGAC+AGG + chr3.2:69624585-69624604 None:intergenic 40.0%
ACTATATCACCCCACACAAT+TGG + chr3.2:69625043-69625062 None:intergenic 40.0%
AGATAGTATGCATGCTGCAT+TGG + chr3.2:69625278-69625297 None:intergenic 40.0%
AGATTCCTAAGCTTCTTCAC+AGG - chr3.2:69622484-69622503 MS.gene25890:CDS 40.0%
CAAGTTTCCGGTTATGAATG+GGG + chr3.2:69623901-69623920 None:intergenic 40.0%
CACAAGTTTCCGGTTATGAA+TGG + chr3.2:69623903-69623922 None:intergenic 40.0%
CACATCACTTTAGCAAGACA+GGG + chr3.2:69624584-69624603 None:intergenic 40.0%
CAGCAACAAAAGCAATGGAA+AGG + chr3.2:69623407-69623426 None:intergenic 40.0%
CATGGATTCGGGTAACTATA+TGG + chr3.2:69623157-69623176 None:intergenic 40.0%
CGTGCAGCCAATATTCAATT+TGG - chr3.2:69625133-69625152 MS.gene25890:intron 40.0%
CTATATCACCCCACACAATT+GGG + chr3.2:69625042-69625061 None:intergenic 40.0%
GAAGCTGCACTTACATTGTT+TGG - chr3.2:69624504-69624523 MS.gene25890:intron 40.0%
GATTCCTAAGCTTCTTCACA+GGG - chr3.2:69622485-69622504 MS.gene25890:CDS 40.0%
GCCGGCAATATCAAACAATA+AGG + chr3.2:69624892-69624911 None:intergenic 40.0%
GGTACACTTACATGTTCGTA+GGG + chr3.2:69623136-69623155 None:intergenic 40.0%
TCAGAAGAGTTTCAGACTCT+CGG + chr3.2:69623927-69623946 None:intergenic 40.0%
TGGTACACTTACATGTTCGT+AGG + chr3.2:69623137-69623156 None:intergenic 40.0%
TGTTGAAGGAGACCTAGAAT+GGG + chr3.2:69624435-69624454 None:intergenic 40.0%
TTTACCCTGTGAAGAAGCTT+AGG + chr3.2:69622492-69622511 None:intergenic 40.0%
! AGTTGATTATGGCTCTGTAG+CGG - chr3.2:69623778-69623797 MS.gene25890:intron 40.0%
! ATAGTGTAGCTCTGTAGTGT+TGG - chr3.2:69622791-69622810 MS.gene25890:intron 40.0%
! CACTTTGACTAGTTCATCCA+AGG + chr3.2:69623670-69623689 None:intergenic 40.0%
! CATAGTTCTACACAACAGTC+TGG + chr3.2:69624844-69624863 None:intergenic 40.0%
! GCACTTACATTGTTTGGTTC+TGG - chr3.2:69624510-69624529 MS.gene25890:intron 40.0%
! TTTTCCTCTTCCGAAAGGTT+TGG - chr3.2:69624361-69624380 MS.gene25890:intron 40.0%
!! TACATTGTTTGGTTCTGGCT+GGG - chr3.2:69624515-69624534 MS.gene25890:intron 40.0%
!! TTACATTGTTTGGTTCTGGC+TGG - chr3.2:69624514-69624533 MS.gene25890:intron 40.0%
AATCTGTGTGGGATAAGGCT+TGG - chr3.2:69624179-69624198 MS.gene25890:intron 45.0%
AATTGTCTGCCCAATCTGTG+TGG - chr3.2:69624167-69624186 MS.gene25890:intron 45.0%
ACACTTACATGTTCGTAGGG+AGG + chr3.2:69623133-69623152 None:intergenic 45.0%
ACTTACATGTTCGTAGGGAG+GGG + chr3.2:69623131-69623150 None:intergenic 45.0%
ACTTTAGCAAGACAGGGAGA+AGG + chr3.2:69624578-69624597 None:intergenic 45.0%
AGACGAGAGCTAGTTGGAAT+AGG + chr3.2:69622435-69622454 None:intergenic 45.0%
ATTGTCTGCCCAATCTGTGT+GGG - chr3.2:69624168-69624187 MS.gene25890:intron 45.0%
CACTTACATGTTCGTAGGGA+GGG + chr3.2:69623132-69623151 None:intergenic 45.0%
CAGAAGAGTTTCAGACTCTC+GGG + chr3.2:69623926-69623945 None:intergenic 45.0%
CTGTTGAAGGAGACCTAGAA+TGG + chr3.2:69624436-69624455 None:intergenic 45.0%
CTTTAGCAAGACAGGGAGAA+GGG + chr3.2:69624577-69624596 None:intergenic 45.0%
GAAATGAGACGAGAGCTAGT+TGG + chr3.2:69622441-69622460 None:intergenic 45.0%
GAAGGTTTGAACGAACAGCT+TGG - chr3.2:69623618-69623637 MS.gene25890:intron 45.0%
GACGAGAGCTAGTTGGAATA+GGG + chr3.2:69622434-69622453 None:intergenic 45.0%
GATTCCAAACCTTTCGGAAG+AGG + chr3.2:69624368-69624387 None:intergenic 45.0%
GCATTGTTGAACTCAGGTGA+GGG + chr3.2:69623711-69623730 None:intergenic 45.0%
TCAGCTGCATTGTTGAACTC+AGG + chr3.2:69623717-69623736 None:intergenic 45.0%
TGAGTTCAACAATGCAGCTG+AGG - chr3.2:69623716-69623735 MS.gene25890:intron 45.0%
TGCATTGTTGAACTCAGGTG+AGG + chr3.2:69623712-69623731 None:intergenic 45.0%
TGTGTCTTGGAATGCTGCAA+CGG - chr3.2:69625430-69625449 MS.gene25890:CDS 45.0%
TTCTGAACCACCTTGTGTCT+TGG - chr3.2:69625417-69625436 MS.gene25890:intron 45.0%
TTGCAGCATTCCAAGACACA+AGG + chr3.2:69625430-69625449 None:intergenic 45.0%
TTTAGCAAGACAGGGAGAAG+GGG + chr3.2:69624576-69624595 None:intergenic 45.0%
TTTGAACGAACAGCTTGGGA+AGG - chr3.2:69623623-69623642 MS.gene25890:intron 45.0%
! AAGCCTTATCCCACACAGAT+TGG + chr3.2:69624180-69624199 None:intergenic 45.0%
! AGCCTTATCCCACACAGATT+GGG + chr3.2:69624179-69624198 None:intergenic 45.0%
! ATGCCATTTGCCCAATTGTG+TGG - chr3.2:69625029-69625048 MS.gene25890:intron 45.0%
! GGAGAGGCTTTTGTGAACTT+GGG - chr3.2:69625467-69625486 MS.gene25890:CDS 45.0%
! TGCCATTTGCCCAATTGTGT+GGG - chr3.2:69625030-69625049 MS.gene25890:intron 45.0%
! TTCTCACGTCGTGCAACTTT+TGG - chr3.2:69625362-69625381 MS.gene25890:intron 45.0%
!! AACTTGGTGCACTAAATCGC+CGG + chr3.2:69624910-69624929 None:intergenic 45.0%
ACCCCACACAATTGGGCAAA+TGG + chr3.2:69625035-69625054 None:intergenic 50.0%
AGCAGACAATCGACATGCAC+TGG - chr3.2:69623571-69623590 MS.gene25890:intron 50.0%
CAGACAATCGACATGCACTG+GGG - chr3.2:69623573-69623592 MS.gene25890:intron 50.0%
CAGCATTCCAAGACACAAGG+TGG + chr3.2:69625427-69625446 None:intergenic 50.0%
GCAGACAATCGACATGCACT+GGG - chr3.2:69623572-69623591 MS.gene25890:intron 50.0%
GCCATTTGCCCAATTGTGTG+GGG - chr3.2:69625031-69625050 MS.gene25890:intron 50.0%
GCGTCTTCCCCATTCATAAC+CGG - chr3.2:69623891-69623910 MS.gene25890:intron 50.0%
GGAGGTGATATGCCCATTCT+AGG - chr3.2:69624420-69624439 MS.gene25890:intron 50.0%
TGCAACGGAACGCTTGACAT+GGG - chr3.2:69625445-69625464 MS.gene25890:CDS 50.0%
TGCCCAATCTGTGTGGGATA+AGG - chr3.2:69624174-69624193 MS.gene25890:intron 50.0%
TTAGCAAGACAGGGAGAAGG+GGG + chr3.2:69624575-69624594 None:intergenic 50.0%
! CTTCTGGGAATCCATGCAAC+CGG - chr3.2:69624395-69624414 MS.gene25890:intron 50.0%
! GGGAGAGGCTTTTGTGAACT+TGG - chr3.2:69625466-69625485 MS.gene25890:CDS 50.0%
! TTCTGGGAATCCATGCAACC+GGG - chr3.2:69624396-69624415 MS.gene25890:intron 50.0%
!! TGTTTGGTTCTGGCTGGGTT+TGG - chr3.2:69624520-69624539 MS.gene25890:intron 50.0%
ATGGGCATATCACCTCCTCC+CGG + chr3.2:69624417-69624436 None:intergenic 55.0%
CTGCAACGGAACGCTTGACA+TGG - chr3.2:69625444-69625463 MS.gene25890:CDS 55.0%
GACTCTCGGGCACAAGTTTC+CGG + chr3.2:69623913-69623932 None:intergenic 55.0%
GCAACGGAACGCTTGACATG+GGG - chr3.2:69625446-69625465 MS.gene25890:CDS 55.0%
!! TGCACTGGGGAGAGCATCAT+CGG - chr3.2:69623586-69623605 MS.gene25890:intron 55.0%
ATCACCTCCTCCCGGTTGCA+TGG + chr3.2:69624409-69624428 None:intergenic 60.0%
GAATCCATGCAACCGGGAGG+AGG - chr3.2:69624402-69624421 MS.gene25890:intron 60.0%
GGAACGCTTGACATGGGGAG+AGG - chr3.2:69625451-69625470 MS.gene25890:CDS 60.0%
TGGGAATCCATGCAACCGGG+AGG - chr3.2:69624399-69624418 MS.gene25890:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 69622411 69625514 69622411 ID=MS.gene25890
chr3.2 mRNA 69622411 69625514 69622411 ID=MS.gene25890.t1;Parent=MS.gene25890
chr3.2 exon 69625419 69625514 69625419 ID=MS.gene25890.t1.exon1;Parent=MS.gene25890.t1
chr3.2 CDS 69625419 69625514 69625419 ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1
chr3.2 exon 69624781 69624858 69624781 ID=MS.gene25890.t1.exon2;Parent=MS.gene25890.t1
chr3.2 CDS 69624781 69624858 69624781 ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1
chr3.2 exon 69624188 69624379 69624188 ID=MS.gene25890.t1.exon3;Parent=MS.gene25890.t1
chr3.2 CDS 69624188 69624379 69624188 ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1
chr3.2 exon 69623376 69623547 69623376 ID=MS.gene25890.t1.exon4;Parent=MS.gene25890.t1
chr3.2 CDS 69623376 69623547 69623376 ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1
chr3.2 exon 69622865 69622938 69622865 ID=MS.gene25890.t1.exon5;Parent=MS.gene25890.t1
chr3.2 CDS 69622865 69622938 69622865 ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1
chr3.2 exon 69622759 69622785 69622759 ID=MS.gene25890.t1.exon6;Parent=MS.gene25890.t1
chr3.2 CDS 69622759 69622785 69622759 ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1
chr3.2 exon 69622618 69622641 69622618 ID=MS.gene25890.t1.exon7;Parent=MS.gene25890.t1
chr3.2 CDS 69622618 69622641 69622618 ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1
chr3.2 exon 69622411 69622536 69622411 ID=MS.gene25890.t1.exon8;Parent=MS.gene25890.t1
chr3.2 CDS 69622411 69622536 69622411 ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1
Gene Sequence

>MS.gene25890

ATGGCTTCCTGTTACTTAAACCCTATTCCAACTAGCTCTCGTCTCATTTCACCAGACTTATCTACAAAATTCAAGATTCCTAAGCTTCTTCACAGGGTAAATTATTTGCATTTAACATTCTTAATAAACATGACTTGCCATTTAACTTTTACTATAAATTATATTCACCCAATTTTCAGTTGTAATATATGTCTTTCGATTAACTTTGATAAATGTAGCTACCGACACTAAAGTAAAACTGTTTAATCTTTCTTGAAGGCATCATGATATATTATTGCATTGATAAATATGGATCTTCTGCAAGAAAATGTTTGACTATTAAAATTTGGACTTTAACACTACTAGGGAAGTAATGATTAATAATCACAGGCATGTTTGAGATAGTGTAGCTCTGTAGTGTTGGTTGTTTGTGTGTAGATTATGTGTGTGTTGTCAGTATTTCCTTAACATAAAAAATTGAGTAGAGTCATTAAAGGTTTACTTTTACAGCACTTTGAAAAGTTTAATGAGTTTCATTTATGCCGTGGACTACTTGTTTTAGAAAAAAAATGATTTTTATAGTTTCTGATTCGTCAAGTGATTTATTCTCTATGGTAAGTGGCAATTTTTTTTCTGATTTGTGGCTATCTGTTTCCTCCTCAATTGTATTTAAGCAGAAAAAGAGGTTTGGTGTCTTGCCCAGATCTTCAAAAGTTACAGCATTTTATGGTTTGAAGACCCCTCCCTACGAACATGTAAGTGTACCATATAGTTACCCGAATCCATGTTTTTGATTGAAGATATACTGTTTTAACCTATATACTTGGATTAGTTGAATGCTGCACAATGCTTATCAGAGAGATCATTGCTGCCATACGTTGCATCGTCATATTTTGCTTTAATTGAGCTAGTTACATAGCTATTCCGATTTTAACCAATATAATGATAAAGAAAGAAACTAGAATTGAGAAAAACATTAGTGATCGACAAAGGGATGACATCATGCAATTAAGTCCTTTCCATTGCTTTTGTTGCTGTTCATTTATTTCCTCCTTTTTGTTGATCCTTCAATTAAGTCCAACCTTTAACAAACTCAAAAATGTAACTTACCTTCATATCATGATTCTAACTTTATTTGTTGCTTCAATATTCATAGGATGCATTAGAGCCATATTTGAGCAAGCAGACAATCGACATGCACTGGGGAGAGCATCATCGGAATTTTGTTGAAGGTTTGAACGAACAGCTTGGGAAGGATGATATACTTTATGGTTACACCTTGGATGAACTAGTCAAAGTGACATACAACAATGGCAATCCCTCACCTGAGTTCAACAATGCAGCTGAGGTATTAACTTATTGATAGCTTACTGACTTTGATCTTTTAAAGTTGATTATGGCTCTGTAGCGGCTTACTTTTCCACATAAACCTATTCAAAATGCTTCAGTGTATATTACATAATAAAATTAGGATACACACTCCCAAGTGTTGATAATATTGGCGTCTTCCCCATTCATAACCGGAAACTTGTGCCCGAGAGTCTGAAACTCTTCTGAAACCATAAAAATGTATTTAGTCATAATGTCTTTAATTGTAGAATGTGGGTTTGAAACTATATCAATGTAAGGTGGAAGTTGAAATAAATGAATACTCTTTCTGTGGTTCCTGCACTCTTTTCCATTTTTACGTGTCATTAATAAATGATTTTTCCTTGTTTCTTCAACAAATGATTTTTATTTGGTTCTTTTCATTTTACCTAGCTTGCATGAAATTGGAAATTGTCTGCCCAATCTGTGTGGGATAAGGCTTGGTTGTTGTTGTTGTTGTTGTCGTCTGCCCAGTCCATGTGATGTAGATATTTTTGGCTGTTCGTCGGATTACAATAACTAACAATAACAAAATTACAATTGTGGTAGCTTTGTGCTTTTATATTCAAATACTGTCTATGTGAATTGTAGTACCTAATTATTTTTTCCTCTTCCGAAAGGTTTGGAATCATGACTTCTTCTGGGAATCCATGCAACCGGGAGGAGGTGATATGCCCATTCTAGGTCTCCTTCAACAGATTGAAAAGGATTTTGGATCATTTACGAATTTCAAAGAAAAGTTTACAGAAGCTGCACTTACATTGTTTGGTTCTGGCTGGGTTTGGCTAGTTTGTAAGTCCTTTTCTAATTGATTCCCCCTTCTCCCTGTCTTGCTAAAGTGATGTGTGTGAGTTATTCAGTTCCCATATTATCTTCTTAATATGCCATAAAATCATTGGACTTCTCTTATAACAAGCGAATATCTAAAATAAATATTCGATTTAAAAATAAGAACCAAGATTTTGTTTTTCTGAATTGTTAAATTCTCATTTTTATCTCACTGGGAATATTTACATATTTTATGCTTGAGGCTGTCACTTGTCTTTTGTCATTTGGTGGTTTAGTTCTACAATAATGGCATTCCCAGACTGTTGTGTAGAACTATGTTGATGTATACTATCTTAAGCAAAACCTTATTGTTTGATATTGCCGGCGATTTAGTGCACCAAGTTGCCCTTTTTTTTTATTGCTGCCGATTGATTGTTGCAAATGTTTGTTGGTTGTTTCAGTGAAGAGAGAAGAGAAACAATTAGCCATTGTTAAAACTTCAAATGCCATTTGCCCAATTGTGTGGGGTGATATAGTAAGTTATTTACCCTTCATTATATAAAATCTGTCCTATTTGAAATTTGAAATGGAGCTGATAGTCTTTTCTCGTGCAGCCAATATTCAATTTGGATTTGTGGGAGGTATGATTATCTCTCTCTACCTACAACACAAAACAACACAAGTAGATGCATATTAAAATTACATAGCAACAACCTTTATGTTAGGCATCATTGACATTTTTTTTTACTCCAATGCAGCATGCATACTATCTGGATTACAAGGTATGTAACCATCATATATCATCGCTTATTTTTCGATAAACATGAACTCAGCAATTCTCACGTCGTGCAACTTTTGGACAGAATGACAGAGCAAAGTATGTGAATGTATTTCTGAACCACCTTGTGTCTTGGAATGCTGCAACGGAACGCTTGACATGGGGAGAGGCTTTTGTGAACTTGGGAGAACCTAAAATTCCTGTTGCATAA

Protein sequence

>MS.gene25890.t1

MASCYLNPIPTSSRLISPDLSTKFKIPKLLHRKKRFGVLPRSSKVTAFYGLKTPPYEHDALEPYLSKQTIDMHWGEHHRNFVEGLNEQLGKDDILYGYTLDELVKVTYNNGNPSPEFNNAAEVWNHDFFWESMQPGGGDMPILGLLQQIEKDFGSFTNFKEKFTEAALTLFGSGWVWLVLKREEKQLAIVKTSNAICPIVWGDIPIFNLDLWEHAYYLDYKNDRAKYVNVFLNHLVSWNAATERLTWGEAFVNLGEPKIPVA