Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25890.t1 | XP_013461079.1 | 96.9 | 262 | 8 | 0 | 1 | 262 | 1 | 262 | 9.80E-153 | 549.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25890.t1 | Q9FMX0 | 66.9 | 266 | 81 | 3 | 1 | 262 | 1 | 263 | 7.7e-106 | 384.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25890.t1 | A0A072V160 | 96.9 | 262 | 8 | 0 | 1 | 262 | 1 | 262 | 7.1e-153 | 549.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049297 | MS.gene25890 | 0.829023 | 6.49E-55 | -1.69E-46 |
MS.gene049351 | MS.gene25890 | 0.825943 | 3.56E-54 | -1.69E-46 |
MS.gene049758 | MS.gene25890 | 0.833818 | 4.29E-56 | -1.69E-46 |
MS.gene050099 | MS.gene25890 | 0.845025 | 5.25E-59 | -1.69E-46 |
MS.gene050301 | MS.gene25890 | 0.858183 | 9.82E-63 | -1.69E-46 |
MS.gene050558 | MS.gene25890 | 0.84258 | 2.37E-58 | -1.69E-46 |
MS.gene050560 | MS.gene25890 | 0.813976 | 1.95E-51 | -1.69E-46 |
MS.gene05101 | MS.gene25890 | 0.821438 | 4.04E-53 | -1.69E-46 |
MS.gene051662 | MS.gene25890 | 0.825168 | 5.43E-54 | -1.69E-46 |
MS.gene051663 | MS.gene25890 | 0.860918 | 1.48E-63 | -1.69E-46 |
MS.gene051860 | MS.gene25890 | 0.843744 | 1.16E-58 | -1.69E-46 |
MS.gene052078 | MS.gene25890 | 0.800733 | 1.25E-48 | -1.69E-46 |
MS.gene052178 | MS.gene25890 | 0.807141 | 5.84E-50 | -1.69E-46 |
MS.gene052207 | MS.gene25890 | 0.84101 | 6.16E-58 | -1.69E-46 |
MS.gene052789 | MS.gene25890 | 0.803514 | 3.36E-49 | -1.69E-46 |
MS.gene053836 | MS.gene25890 | 0.869237 | 3.60E-66 | -1.69E-46 |
MS.gene054010 | MS.gene25890 | 0.802112 | 6.55E-49 | -1.69E-46 |
MS.gene054011 | MS.gene25890 | 0.826552 | 2.55E-54 | -1.69E-46 |
MS.gene054012 | MS.gene25890 | 0.811704 | 6.13E-51 | -1.69E-46 |
MS.gene054013 | MS.gene25890 | 0.810611 | 1.06E-50 | -1.69E-46 |
MS.gene054473 | MS.gene25890 | 0.833263 | 5.90E-56 | -1.69E-46 |
MS.gene05455 | MS.gene25890 | 0.853103 | 2.98E-61 | -1.69E-46 |
MS.gene054942 | MS.gene25890 | 0.844097 | 9.34E-59 | -1.69E-46 |
MS.gene055277 | MS.gene25890 | 0.844814 | 5.99E-59 | -1.69E-46 |
MS.gene055303 | MS.gene25890 | 0.846943 | 1.58E-59 | -1.69E-46 |
MS.gene055390 | MS.gene25890 | 0.85414 | 1.50E-61 | -1.69E-46 |
MS.gene055422 | MS.gene25890 | 0.862075 | 6.55E-64 | -1.69E-46 |
MS.gene055428 | MS.gene25890 | 0.848863 | 4.67E-60 | -1.69E-46 |
MS.gene055604 | MS.gene25890 | 0.81045 | 1.15E-50 | -1.69E-46 |
MS.gene056612 | MS.gene25890 | 0.807336 | 5.31E-50 | -1.69E-46 |
MS.gene056902 | MS.gene25890 | 0.801334 | 9.46E-49 | -1.69E-46 |
MS.gene057121 | MS.gene25890 | 0.864323 | 1.32E-64 | -1.69E-46 |
MS.gene057245 | MS.gene25890 | 0.841908 | 3.57E-58 | -1.69E-46 |
MS.gene057439 | MS.gene25890 | 0.821779 | 3.37E-53 | -1.69E-46 |
MS.gene057469 | MS.gene25890 | 0.832078 | 1.16E-55 | -1.69E-46 |
MS.gene058002 | MS.gene25890 | 0.837831 | 4.12E-57 | -1.69E-46 |
MS.gene05811 | MS.gene25890 | 0.879203 | 1.51E-69 | -1.69E-46 |
MS.gene058660 | MS.gene25890 | 0.824254 | 8.92E-54 | -1.69E-46 |
MS.gene05907 | MS.gene25890 | 0.834766 | 2.48E-56 | -1.69E-46 |
MS.gene059518 | MS.gene25890 | 0.838483 | 2.80E-57 | -1.69E-46 |
MS.gene05984 | MS.gene25890 | 0.838705 | 2.45E-57 | -1.69E-46 |
MS.gene060476 | MS.gene25890 | 0.802256 | 6.12E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25890.t1 | MTR_3g078860 | 96.947 | 262 | 8 | 0 | 1 | 262 | 1 | 262 | 0.0 | 533 |
MS.gene25890.t1 | MTR_1g048990 | 49.115 | 226 | 98 | 3 | 43 | 252 | 51 | 275 | 3.95e-67 | 211 |
MS.gene25890.t1 | MTR_1g048990 | 48.128 | 187 | 80 | 3 | 43 | 213 | 51 | 236 | 3.12e-50 | 165 |
MS.gene25890.t1 | MTR_3g094250 | 31.897 | 232 | 141 | 8 | 20 | 243 | 7 | 229 | 2.91e-29 | 110 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25890.t1 | AT5G23310 | 66.541 | 266 | 82 | 2 | 1 | 262 | 1 | 263 | 1.01e-130 | 370 |
MS.gene25890.t1 | AT5G51100 | 50.435 | 230 | 95 | 4 | 33 | 245 | 36 | 263 | 4.73e-76 | 233 |
MS.gene25890.t1 | AT5G51100 | 48.696 | 230 | 90 | 5 | 33 | 245 | 36 | 254 | 1.43e-69 | 216 |
MS.gene25890.t1 | AT4G25100 | 50.704 | 213 | 100 | 3 | 39 | 250 | 1 | 209 | 5.66e-68 | 209 |
MS.gene25890.t1 | AT4G25100 | 50.704 | 213 | 100 | 3 | 39 | 250 | 1 | 209 | 5.66e-68 | 209 |
MS.gene25890.t1 | AT4G25100 | 50.704 | 213 | 100 | 3 | 39 | 250 | 1 | 209 | 5.66e-68 | 209 |
MS.gene25890.t1 | AT4G25100 | 50.704 | 213 | 100 | 3 | 39 | 250 | 1 | 209 | 5.66e-68 | 209 |
MS.gene25890.t1 | AT5G51100 | 50.761 | 197 | 79 | 3 | 65 | 245 | 1 | 195 | 2.68e-66 | 206 |
MS.gene25890.t1 | AT5G51100 | 50.761 | 197 | 79 | 3 | 65 | 245 | 1 | 195 | 2.68e-66 | 206 |
MS.gene25890.t1 | AT4G25100 | 49.733 | 187 | 89 | 3 | 65 | 250 | 1 | 183 | 2.72e-57 | 181 |
MS.gene25890.t1 | AT5G51100 | 50.538 | 186 | 73 | 4 | 33 | 201 | 36 | 219 | 6.57e-57 | 182 |
MS.gene25890.t1 | AT5G51100 | 50.538 | 186 | 73 | 4 | 33 | 201 | 36 | 219 | 6.57e-57 | 182 |
MS.gene25890.t1 | AT3G10920 | 33.036 | 224 | 130 | 8 | 32 | 243 | 9 | 224 | 2.27e-30 | 113 |
MS.gene25890.t1 | AT3G10920 | 32.589 | 224 | 130 | 9 | 32 | 243 | 9 | 223 | 5.54e-28 | 107 |
MS.gene25890.t1 | AT3G56350 | 34.409 | 186 | 98 | 5 | 55 | 228 | 42 | 215 | 1.15e-26 | 104 |
Find 67 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACAGATTGAAAAGGATTT+TGG | 0.090800 | 3.2:-69623453 | MS.gene25890:CDS |
GGGAAGGATGATATACTTTA+TGG | 0.140754 | 3.2:-69624264 | MS.gene25890:CDS |
CGTGCAGCCAATATTCAATT+TGG | 0.180074 | 3.2:-69622770 | MS.gene25890:intron |
TTTGGAATCATGACTTCTTC+TGG | 0.232976 | 3.2:-69623524 | MS.gene25890:CDS |
TGGAATAGGGTTTAAGTAAC+AGG | 0.279125 | 3.2:+69625485 | None:intergenic |
GCACTTACATTGTTTGGTTC+TGG | 0.289790 | 3.2:-69623393 | MS.gene25890:CDS |
GAAGCTGCACTTACATTGTT+TGG | 0.294047 | 3.2:-69623399 | MS.gene25890:CDS |
CACAAATCCAAATTGAATAT+TGG | 0.316675 | 3.2:+69622763 | None:intergenic |
TTACATTGTTTGGTTCTGGC+TGG | 0.329309 | 3.2:-69623389 | MS.gene25890:CDS |
GGAGGTGATATGCCCATTCT+AGG | 0.347578 | 3.2:-69623483 | MS.gene25890:CDS |
ACTATATCACCCCACACAAT+TGG | 0.353385 | 3.2:+69622863 | None:intergenic |
TGTTTGGTTCTGGCTGGGTT+TGG | 0.376067 | 3.2:-69623383 | MS.gene25890:CDS |
AGACGAGAGCTAGTTGGAAT+AGG | 0.389477 | 3.2:+69625471 | None:intergenic |
TTGGAATCATGACTTCTTCT+GGG | 0.399356 | 3.2:-69623523 | MS.gene25890:CDS |
AATGCAGCATGCATACTATC+TGG | 0.401361 | 3.2:-69622626 | MS.gene25890:intron |
AATATTCAATTTGGATTTGT+GGG | 0.402335 | 3.2:-69622761 | MS.gene25890:CDS |
GACGAGAGCTAGTTGGAATA+GGG | 0.406364 | 3.2:+69625472 | None:intergenic |
ACCCCACACAATTGGGCAAA+TGG | 0.409488 | 3.2:+69622871 | None:intergenic |
TTCTGAACCACCTTGTGTCT+TGG | 0.411846 | 3.2:-69622486 | MS.gene25890:CDS |
CTTCTGGGAATCCATGCAAC+CGG | 0.415502 | 3.2:-69623508 | MS.gene25890:CDS |
ATTGTCTGCTTGCTCAAATA+TGG | 0.433157 | 3.2:+69624345 | None:intergenic |
TACATTGTTTGGTTCTGGCT+GGG | 0.439690 | 3.2:-69623388 | MS.gene25890:CDS |
TTTACCCTGTGAAGAAGCTT+AGG | 0.443807 | 3.2:+69625414 | None:intergenic |
CAATATTCAATTTGGATTTG+TGG | 0.448288 | 3.2:-69622762 | MS.gene25890:CDS |
CTATATCACCCCACACAATT+GGG | 0.451922 | 3.2:+69622864 | None:intergenic |
AGCAGACAATCGACATGCAC+TGG | 0.468183 | 3.2:-69624332 | MS.gene25890:CDS |
AAGGTTTGAACGAACAGCTT+GGG | 0.470005 | 3.2:-69624284 | MS.gene25890:CDS |
AGATTCCTAAGCTTCTTCAC+AGG | 0.484788 | 3.2:-69625419 | MS.gene25890:CDS |
ATCACCTCCTCCCGGTTGCA+TGG | 0.486059 | 3.2:+69623497 | None:intergenic |
CTGTTGAAGGAGACCTAGAA+TGG | 0.488189 | 3.2:+69623470 | None:intergenic |
TCTCCTTCAACAGATTGAAA+AGG | 0.504146 | 3.2:-69623460 | MS.gene25890:CDS |
CTGCAACGGAACGCTTGACA+TGG | 0.509366 | 3.2:-69622459 | MS.gene25890:CDS |
CACTTACATGTTCGTAGGGA+GGG | 0.519044 | 3.2:+69624774 | None:intergenic |
GAAGGTTTGAACGAACAGCT+TGG | 0.524067 | 3.2:-69624285 | MS.gene25890:CDS |
TGCACTGGGGAGAGCATCAT+CGG | 0.535998 | 3.2:-69624317 | MS.gene25890:CDS |
TGGTACACTTACATGTTCGT+AGG | 0.546092 | 3.2:+69624769 | None:intergenic |
TATACTTTATGGTTACACCT+TGG | 0.547554 | 3.2:-69624253 | MS.gene25890:CDS |
TGCCATTTGCCCAATTGTGT+GGG | 0.548387 | 3.2:-69622873 | MS.gene25890:CDS |
CACTTTGACTAGTTCATCCA+AGG | 0.548426 | 3.2:+69624236 | None:intergenic |
TTCTGGGAATCCATGCAACC+GGG | 0.558653 | 3.2:-69623507 | MS.gene25890:CDS |
GAATCCATGCAACCGGGAGG+AGG | 0.560022 | 3.2:-69623501 | MS.gene25890:CDS |
GCAGACAATCGACATGCACT+GGG | 0.561935 | 3.2:-69624331 | MS.gene25890:CDS |
ATGCCATTTGCCCAATTGTG+TGG | 0.565068 | 3.2:-69622874 | MS.gene25890:CDS |
TGCATACTATCTGGATTACA+AGG | 0.567151 | 3.2:-69622617 | MS.gene25890:intron |
ACTTACATGTTCGTAGGGAG+GGG | 0.579268 | 3.2:+69624775 | None:intergenic |
TGTGTCTTGGAATGCTGCAA+CGG | 0.582003 | 3.2:-69622473 | MS.gene25890:CDS |
GGAACGCTTGACATGGGGAG+AGG | 0.586433 | 3.2:-69622452 | MS.gene25890:CDS |
GATTCCTAAGCTTCTTCACA+GGG | 0.589975 | 3.2:-69625418 | MS.gene25890:intron |
TGCAACGGAACGCTTGACAT+GGG | 0.591829 | 3.2:-69622458 | MS.gene25890:CDS |
GGTACACTTACATGTTCGTA+GGG | 0.593745 | 3.2:+69624770 | None:intergenic |
GAAATGAGACGAGAGCTAGT+TGG | 0.595195 | 3.2:+69625465 | None:intergenic |
GCATTGTTGAACTCAGGTGA+GGG | 0.599120 | 3.2:+69624195 | None:intergenic |
TGTTGAAGGAGACCTAGAAT+GGG | 0.600044 | 3.2:+69623471 | None:intergenic |
TGCATTGTTGAACTCAGGTG+AGG | 0.604713 | 3.2:+69624194 | None:intergenic |
TCAGCTGCATTGTTGAACTC+AGG | 0.612280 | 3.2:+69624189 | None:intergenic |
TGAGTTCAACAATGCAGCTG+AGG | 0.616915 | 3.2:-69624187 | MS.gene25890:intron |
ATTCAATTTGGATTTGTGGG+AGG | 0.617816 | 3.2:-69622758 | MS.gene25890:intron |
TTTGAACGAACAGCTTGGGA+AGG | 0.619243 | 3.2:-69624280 | MS.gene25890:CDS |
ATGGGCATATCACCTCCTCC+CGG | 0.633695 | 3.2:+69623489 | None:intergenic |
GCAACGGAACGCTTGACATG+GGG | 0.640768 | 3.2:-69622457 | MS.gene25890:CDS |
CAGCATTCCAAGACACAAGG+TGG | 0.656423 | 3.2:+69622479 | None:intergenic |
ACACTTACATGTTCGTAGGG+AGG | 0.658707 | 3.2:+69624773 | None:intergenic |
GTCAAAGTGACATACAACAA+TGG | 0.665004 | 3.2:-69624222 | MS.gene25890:CDS |
TTGCAGCATTCCAAGACACA+AGG | 0.678422 | 3.2:+69622476 | None:intergenic |
GCCATTTGCCCAATTGTGTG+GGG | 0.687217 | 3.2:-69622872 | MS.gene25890:CDS |
TGGGAATCCATGCAACCGGG+AGG | 0.708383 | 3.2:-69623504 | MS.gene25890:CDS |
CAGACAATCGACATGCACTG+GGG | 0.790084 | 3.2:-69624330 | MS.gene25890:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTATAGTAAAAGTTAAA+TGG | + | chr3.2:69622551-69622570 | None:intergenic | 10.0% |
!! | GTATATTACATAATAAAATT+AGG | - | chr3.2:69623839-69623858 | MS.gene25890:intron | 10.0% |
!! | AATGTTTGACTATTAAAATT+TGG | - | chr3.2:69622717-69622736 | MS.gene25890:intron | 15.0% |
!! | ATATATTACAACTGAAAATT+GGG | + | chr3.2:69622581-69622600 | None:intergenic | 15.0% |
!! | TTCTTTCTTTATCATTATAT+TGG | + | chr3.2:69623327-69623346 | None:intergenic | 15.0% |
!!! | ATCATTATATTGGTTAAAAT+CGG | + | chr3.2:69623317-69623336 | None:intergenic | 15.0% |
!!! | TATGACTAAATACATTTTTA+TGG | + | chr3.2:69623952-69623971 | None:intergenic | 15.0% |
!!! | TATTATTGCATTGATAAATA+TGG | - | chr3.2:69622680-69622699 | MS.gene25890:intron | 15.0% |
!!! | TTCAACAAATGATTTTTATT+TGG | - | chr3.2:69624109-69624128 | MS.gene25890:intron | 15.0% |
!! | AAGTAATGATTAATAATCAC+AGG | - | chr3.2:69622758-69622777 | MS.gene25890:intron | 20.0% |
!! | AATATTCAATTTGGATTTGT+GGG | - | chr3.2:69625142-69625161 | MS.gene25890:intron | 20.0% |
!! | AATTCAGAAAAACAAAATCT+TGG | + | chr3.2:69624715-69624734 | None:intergenic | 20.0% |
!! | CAATAACAAAATTACAATTG+TGG | - | chr3.2:69624281-69624300 | MS.gene25890:CDS | 20.0% |
!! | CATATATTACAACTGAAAAT+TGG | + | chr3.2:69622582-69622601 | None:intergenic | 20.0% |
!! | GCATATTAAGAAGATAATAT+GGG | + | chr3.2:69624623-69624642 | None:intergenic | 20.0% |
!! | TATATCTTCAATCAAAAACA+TGG | + | chr3.2:69623175-69623194 | None:intergenic | 20.0% |
!! | TTAATATGCCATAAAATCAT+TGG | - | chr3.2:69624634-69624653 | MS.gene25890:intron | 20.0% |
!! | TTATTAATGACACGTAAAAA+TGG | + | chr3.2:69624071-69624090 | None:intergenic | 20.0% |
!!! | ATTTACATATTTTATGCTTG+AGG | - | chr3.2:69624766-69624785 | MS.gene25890:intron | 20.0% |
!!! | CTACTCAATTTTTTATGTTA+AGG | + | chr3.2:69622855-69622874 | None:intergenic | 20.0% |
!!! | GACAGATTTTATATAATGAA+GGG | + | chr3.2:69625076-69625095 | None:intergenic | 20.0% |
!!! | TACATTTTTGAGTTTGTTAA+AGG | + | chr3.2:69623474-69623493 | None:intergenic | 20.0% |
!!! | TGATCTTTTAAAGTTGATTA+TGG | - | chr3.2:69623767-69623786 | MS.gene25890:intron | 20.0% |
!!! | TTTGAAACTATATCAATGTA+AGG | - | chr3.2:69623996-69624015 | MS.gene25890:intron | 20.0% |
! | AAACATTTGCAACAATCAAT+CGG | + | chr3.2:69624953-69624972 | None:intergenic | 25.0% |
! | AAATAAGCGATGATATATGA+TGG | + | chr3.2:69625319-69625338 | None:intergenic | 25.0% |
! | AAATTGAGTAGAGTCATTAA+AGG | - | chr3.2:69622864-69622883 | MS.gene25890:intron | 25.0% |
! | AACTGTTTAATCTTTCTTGA+AGG | - | chr3.2:69622647-69622666 | MS.gene25890:intron | 25.0% |
! | AAGTTAGAATCATGATATGA+AGG | + | chr3.2:69623502-69623521 | None:intergenic | 25.0% |
! | AATAAAAAAAAAGGGCAACT+TGG | + | chr3.2:69624926-69624945 | None:intergenic | 25.0% |
! | ATAAATGAATACTCTTTCTG+TGG | - | chr3.2:69624030-69624049 | MS.gene25890:intron | 25.0% |
! | ATGTCTTTAATTGTAGAATG+TGG | - | chr3.2:69623972-69623991 | MS.gene25890:intron | 25.0% |
! | CAATATTCAATTTGGATTTG+TGG | - | chr3.2:69625141-69625160 | MS.gene25890:intron | 25.0% |
! | CACAAATCCAAATTGAATAT+TGG | + | chr3.2:69625143-69625162 | None:intergenic | 25.0% |
! | CTCCATTTCAAATTTCAAAT+AGG | + | chr3.2:69625098-69625117 | None:intergenic | 25.0% |
! | GGCATATTAAGAAGATAATA+TGG | + | chr3.2:69624624-69624643 | None:intergenic | 25.0% |
! | TAATTGAAGGATCAACAAAA+AGG | + | chr3.2:69623444-69623463 | None:intergenic | 25.0% |
! | TGTCTTTAATTGTAGAATGT+GGG | - | chr3.2:69623973-69623992 | MS.gene25890:intron | 25.0% |
! | TTCAACTAATCCAAGTATAT+AGG | + | chr3.2:69623207-69623226 | None:intergenic | 25.0% |
! | TTCAATCAAAAACATGGATT+CGG | + | chr3.2:69623169-69623188 | None:intergenic | 25.0% |
! | TTGTATTTAAGCAGAAAAAG+AGG | - | chr3.2:69623053-69623072 | MS.gene25890:intron | 25.0% |
! | TTTCTGCTTAAATACAATTG+AGG | + | chr3.2:69623050-69623069 | None:intergenic | 25.0% |
!! | AAACAGTTTTACTTTAGTGT+CGG | + | chr3.2:69622635-69622654 | None:intergenic | 25.0% |
!! | AATCATTTGTTGAAGAAACA+AGG | + | chr3.2:69624103-69624122 | None:intergenic | 25.0% |
!! | GGACAGATTTTATATAATGA+AGG | + | chr3.2:69625077-69625096 | None:intergenic | 25.0% |
!! | GTCCTATTTGAAATTTGAAA+TGG | - | chr3.2:69625093-69625112 | MS.gene25890:intron | 25.0% |
!! | TCAAAAGTTACAGCATTTTA+TGG | - | chr3.2:69623097-69623116 | MS.gene25890:intron | 25.0% |
!! | TTGAATTTTGTAGATAAGTC+TGG | + | chr3.2:69622465-69622484 | None:intergenic | 25.0% |
!! | TTTGTTGCTTCAATATTCAT+AGG | - | chr3.2:69623524-69623543 | MS.gene25890:CDS | 25.0% |
!!! | AATTCTCATTTTTATCTCAC+TGG | - | chr3.2:69624739-69624758 | MS.gene25890:intron | 25.0% |
!!! | ACTGTTTTAACCTATATACT+TGG | - | chr3.2:69623194-69623213 | MS.gene25890:intron | 25.0% |
!!! | ATTCTCATTTTTATCTCACT+GGG | - | chr3.2:69624740-69624759 | MS.gene25890:intron | 25.0% |
!!! | GCAATTTTTTTTCTGATTTG+TGG | - | chr3.2:69623011-69623030 | MS.gene25890:intron | 25.0% |
!!! | TTTTTGAGTTTGTTAAAGGT+TGG | + | chr3.2:69623470-69623489 | None:intergenic | 25.0% |
AAAACATTAGTGATCGACAA+AGG | - | chr3.2:69623360-69623379 | MS.gene25890:intron | 30.0% | |
AAACATTAGTGATCGACAAA+GGG | - | chr3.2:69623361-69623380 | MS.gene25890:intron | 30.0% | |
ACCTTATTGTTTGATATTGC+CGG | - | chr3.2:69624888-69624907 | MS.gene25890:intron | 30.0% | |
ATAGCAACAACCTTTATGTT+AGG | - | chr3.2:69625229-69625248 | MS.gene25890:intron | 30.0% | |
ATCGGCAGCAATAAAAAAAA+AGG | + | chr3.2:69624935-69624954 | None:intergenic | 30.0% | |
ATTTGGACTTTAACACTACT+AGG | - | chr3.2:69622734-69622753 | MS.gene25890:intron | 30.0% | |
CCAAAAATATCTACATCACA+TGG | + | chr3.2:69624236-69624255 | None:intergenic | 30.0% | |
CGGAAGAGGAAAAAATAATT+AGG | + | chr3.2:69624354-69624373 | None:intergenic | 30.0% | |
GAAACTATATCAATGTAAGG+TGG | - | chr3.2:69623999-69624018 | MS.gene25890:intron | 30.0% | |
GATTTATTCTCTATGGTAAG+TGG | - | chr3.2:69622989-69623008 | MS.gene25890:intron | 30.0% | |
GTCAAGTGATTTATTCTCTA+TGG | - | chr3.2:69622982-69623001 | MS.gene25890:intron | 30.0% | |
TAAAGGTTGGACTTAATTGA+AGG | + | chr3.2:69623457-69623476 | None:intergenic | 30.0% | |
TATACTTTATGGTTACACCT+TGG | - | chr3.2:69623650-69623669 | MS.gene25890:intron | 30.0% | |
TCAATCAAAAACATGGATTC+GGG | + | chr3.2:69623168-69623187 | None:intergenic | 30.0% | |
TCGGCAGCAATAAAAAAAAA+GGG | + | chr3.2:69624934-69624953 | None:intergenic | 30.0% | |
TGATTGTTGCAAATGTTTGT+TGG | - | chr3.2:69624955-69624974 | MS.gene25890:intron | 30.0% | |
TTTAAGCAGAAAAAGAGGTT+TGG | - | chr3.2:69623058-69623077 | MS.gene25890:intron | 30.0% | |
TTTGGACTTTAACACTACTA+GGG | - | chr3.2:69622735-69622754 | MS.gene25890:intron | 30.0% | |
! | AATCCTTTTCAATCTGTTGA+AGG | + | chr3.2:69624449-69624468 | None:intergenic | 30.0% |
! | AGAGAAGTCCAATGATTTTA+TGG | + | chr3.2:69624645-69624664 | None:intergenic | 30.0% |
! | CAACAGATTGAAAAGGATTT+TGG | - | chr3.2:69624450-69624469 | MS.gene25890:intron | 30.0% |
! | CCATGTGATGTAGATATTTT+TGG | - | chr3.2:69624233-69624252 | MS.gene25890:CDS | 30.0% |
! | GCATTTTGAATAGGTTTATG+TGG | + | chr3.2:69623813-69623832 | None:intergenic | 30.0% |
!! | GGCATTTGAAGTTTTAACAA+TGG | + | chr3.2:69625014-69625033 | None:intergenic | 30.0% |
!! | GTGGTTTAGTTCTACAATAA+TGG | - | chr3.2:69624813-69624832 | MS.gene25890:CDS | 30.0% |
!! | TACACTGAAGCATTTTGAAT+AGG | + | chr3.2:69623822-69623841 | None:intergenic | 30.0% |
!! | TTTCTAAAACAAGTAGTCCA+CGG | + | chr3.2:69622935-69622954 | None:intergenic | 30.0% |
!!! | TTATTTTTTCCTCTTCCGAA+AGG | - | chr3.2:69624356-69624375 | MS.gene25890:CDS | 30.0% |
AAATATGACGATGCAACGTA+TGG | + | chr3.2:69623264-69623283 | None:intergenic | 35.0% | |
AAGGGGGAATCAATTAGAAA+AGG | + | chr3.2:69624559-69624578 | None:intergenic | 35.0% | |
AATATCTACATCACATGGAC+TGG | + | chr3.2:69624231-69624250 | None:intergenic | 35.0% | |
AATGAGTTTCATTTATGCCG+TGG | - | chr3.2:69622915-69622934 | MS.gene25890:CDS | 35.0% | |
ACAAGTTTCCGGTTATGAAT+GGG | + | chr3.2:69623902-69623921 | None:intergenic | 35.0% | |
ACGCCAATATTATCAACACT+TGG | + | chr3.2:69623875-69623894 | None:intergenic | 35.0% | |
AGTCATGATTCCAAACCTTT+CGG | + | chr3.2:69624374-69624393 | None:intergenic | 35.0% | |
ATATCTACATCACATGGACT+GGG | + | chr3.2:69624230-69624249 | None:intergenic | 35.0% | |
ATGAACAGCAACAAAAGCAA+TGG | + | chr3.2:69623412-69623431 | None:intergenic | 35.0% | |
ATTCAATTTGGATTTGTGGG+AGG | - | chr3.2:69625145-69625164 | MS.gene25890:intron | 35.0% | |
ATTGTCTGCTTGCTCAAATA+TGG | + | chr3.2:69623561-69623580 | None:intergenic | 35.0% | |
CGCCAATATTATCAACACTT+GGG | + | chr3.2:69623874-69623893 | None:intergenic | 35.0% | |
CTGCTTAAATACAATTGAGG+AGG | + | chr3.2:69623047-69623066 | None:intergenic | 35.0% | |
GGGAAGGATGATATACTTTA+TGG | - | chr3.2:69623639-69623658 | MS.gene25890:intron | 35.0% | |
GTCAAAGTGACATACAACAA+TGG | - | chr3.2:69623681-69623700 | MS.gene25890:intron | 35.0% | |
GTCAATGATGCCTAACATAA+AGG | + | chr3.2:69625242-69625261 | None:intergenic | 35.0% | |
TCTCCTTCAACAGATTGAAA+AGG | - | chr3.2:69624443-69624462 | MS.gene25890:intron | 35.0% | |
TGCATACTATCTGGATTACA+AGG | - | chr3.2:69625286-69625305 | MS.gene25890:intron | 35.0% | |
TGGAATAGGGTTTAAGTAAC+AGG | + | chr3.2:69622421-69622440 | None:intergenic | 35.0% | |
TTGAAGGATCAACAAAAAGG+AGG | + | chr3.2:69623441-69623460 | None:intergenic | 35.0% | |
TTGGAATCATGACTTCTTCT+GGG | - | chr3.2:69624380-69624399 | MS.gene25890:intron | 35.0% | |
TTTCCAATTTCATGCAAGCT+AGG | + | chr3.2:69624149-69624168 | None:intergenic | 35.0% | |
! | ATAGTTCTACACAACAGTCT+GGG | + | chr3.2:69624843-69624862 | None:intergenic | 35.0% |
! | CATCATCGGAATTTTGTTGA+AGG | - | chr3.2:69623600-69623619 | MS.gene25890:intron | 35.0% |
! | GTAAAAATGGAAAAGAGTGC+AGG | + | chr3.2:69624058-69624077 | None:intergenic | 35.0% |
! | GTCACTTGTCTTTTGTCATT+TGG | - | chr3.2:69624791-69624810 | MS.gene25890:CDS | 35.0% |
! | TTACCTAGCTTGCATGAAAT+TGG | - | chr3.2:69624143-69624162 | MS.gene25890:intron | 35.0% |
! | TTTGGAATCATGACTTCTTC+TGG | - | chr3.2:69624379-69624398 | MS.gene25890:intron | 35.0% |
!! | ACTTGTCTTTTGTCATTTGG+TGG | - | chr3.2:69624794-69624813 | MS.gene25890:CDS | 35.0% |
!! | CTCCCAAGTGTTGATAATAT+TGG | - | chr3.2:69623869-69623888 | MS.gene25890:intron | 35.0% |
!! | GCTGTAACTTTTGAAGATCT+GGG | + | chr3.2:69623091-69623110 | None:intergenic | 35.0% |
!! | TGCTGTAACTTTTGAAGATC+TGG | + | chr3.2:69623092-69623111 | None:intergenic | 35.0% |
!!! | AGATATTTTTGGCTGTTCGT+CGG | - | chr3.2:69624244-69624263 | MS.gene25890:CDS | 35.0% |
!!! | CTTGTGTTGTTTTGTGTTGT+AGG | + | chr3.2:69625189-69625208 | None:intergenic | 35.0% |
AAGGTTTGAACGAACAGCTT+GGG | - | chr3.2:69623619-69623638 | MS.gene25890:intron | 40.0% | |
AATGCAGCATGCATACTATC+TGG | - | chr3.2:69625277-69625296 | MS.gene25890:intron | 40.0% | |
ACACATCACTTTAGCAAGAC+AGG | + | chr3.2:69624585-69624604 | None:intergenic | 40.0% | |
ACTATATCACCCCACACAAT+TGG | + | chr3.2:69625043-69625062 | None:intergenic | 40.0% | |
AGATAGTATGCATGCTGCAT+TGG | + | chr3.2:69625278-69625297 | None:intergenic | 40.0% | |
AGATTCCTAAGCTTCTTCAC+AGG | - | chr3.2:69622484-69622503 | MS.gene25890:CDS | 40.0% | |
CAAGTTTCCGGTTATGAATG+GGG | + | chr3.2:69623901-69623920 | None:intergenic | 40.0% | |
CACAAGTTTCCGGTTATGAA+TGG | + | chr3.2:69623903-69623922 | None:intergenic | 40.0% | |
CACATCACTTTAGCAAGACA+GGG | + | chr3.2:69624584-69624603 | None:intergenic | 40.0% | |
CAGCAACAAAAGCAATGGAA+AGG | + | chr3.2:69623407-69623426 | None:intergenic | 40.0% | |
CATGGATTCGGGTAACTATA+TGG | + | chr3.2:69623157-69623176 | None:intergenic | 40.0% | |
CGTGCAGCCAATATTCAATT+TGG | - | chr3.2:69625133-69625152 | MS.gene25890:intron | 40.0% | |
CTATATCACCCCACACAATT+GGG | + | chr3.2:69625042-69625061 | None:intergenic | 40.0% | |
GAAGCTGCACTTACATTGTT+TGG | - | chr3.2:69624504-69624523 | MS.gene25890:intron | 40.0% | |
GATTCCTAAGCTTCTTCACA+GGG | - | chr3.2:69622485-69622504 | MS.gene25890:CDS | 40.0% | |
GCCGGCAATATCAAACAATA+AGG | + | chr3.2:69624892-69624911 | None:intergenic | 40.0% | |
GGTACACTTACATGTTCGTA+GGG | + | chr3.2:69623136-69623155 | None:intergenic | 40.0% | |
TCAGAAGAGTTTCAGACTCT+CGG | + | chr3.2:69623927-69623946 | None:intergenic | 40.0% | |
TGGTACACTTACATGTTCGT+AGG | + | chr3.2:69623137-69623156 | None:intergenic | 40.0% | |
TGTTGAAGGAGACCTAGAAT+GGG | + | chr3.2:69624435-69624454 | None:intergenic | 40.0% | |
TTTACCCTGTGAAGAAGCTT+AGG | + | chr3.2:69622492-69622511 | None:intergenic | 40.0% | |
! | AGTTGATTATGGCTCTGTAG+CGG | - | chr3.2:69623778-69623797 | MS.gene25890:intron | 40.0% |
! | ATAGTGTAGCTCTGTAGTGT+TGG | - | chr3.2:69622791-69622810 | MS.gene25890:intron | 40.0% |
! | CACTTTGACTAGTTCATCCA+AGG | + | chr3.2:69623670-69623689 | None:intergenic | 40.0% |
! | CATAGTTCTACACAACAGTC+TGG | + | chr3.2:69624844-69624863 | None:intergenic | 40.0% |
! | GCACTTACATTGTTTGGTTC+TGG | - | chr3.2:69624510-69624529 | MS.gene25890:intron | 40.0% |
! | TTTTCCTCTTCCGAAAGGTT+TGG | - | chr3.2:69624361-69624380 | MS.gene25890:intron | 40.0% |
!! | TACATTGTTTGGTTCTGGCT+GGG | - | chr3.2:69624515-69624534 | MS.gene25890:intron | 40.0% |
!! | TTACATTGTTTGGTTCTGGC+TGG | - | chr3.2:69624514-69624533 | MS.gene25890:intron | 40.0% |
AATCTGTGTGGGATAAGGCT+TGG | - | chr3.2:69624179-69624198 | MS.gene25890:intron | 45.0% | |
AATTGTCTGCCCAATCTGTG+TGG | - | chr3.2:69624167-69624186 | MS.gene25890:intron | 45.0% | |
ACACTTACATGTTCGTAGGG+AGG | + | chr3.2:69623133-69623152 | None:intergenic | 45.0% | |
ACTTACATGTTCGTAGGGAG+GGG | + | chr3.2:69623131-69623150 | None:intergenic | 45.0% | |
ACTTTAGCAAGACAGGGAGA+AGG | + | chr3.2:69624578-69624597 | None:intergenic | 45.0% | |
AGACGAGAGCTAGTTGGAAT+AGG | + | chr3.2:69622435-69622454 | None:intergenic | 45.0% | |
ATTGTCTGCCCAATCTGTGT+GGG | - | chr3.2:69624168-69624187 | MS.gene25890:intron | 45.0% | |
CACTTACATGTTCGTAGGGA+GGG | + | chr3.2:69623132-69623151 | None:intergenic | 45.0% | |
CAGAAGAGTTTCAGACTCTC+GGG | + | chr3.2:69623926-69623945 | None:intergenic | 45.0% | |
CTGTTGAAGGAGACCTAGAA+TGG | + | chr3.2:69624436-69624455 | None:intergenic | 45.0% | |
CTTTAGCAAGACAGGGAGAA+GGG | + | chr3.2:69624577-69624596 | None:intergenic | 45.0% | |
GAAATGAGACGAGAGCTAGT+TGG | + | chr3.2:69622441-69622460 | None:intergenic | 45.0% | |
GAAGGTTTGAACGAACAGCT+TGG | - | chr3.2:69623618-69623637 | MS.gene25890:intron | 45.0% | |
GACGAGAGCTAGTTGGAATA+GGG | + | chr3.2:69622434-69622453 | None:intergenic | 45.0% | |
GATTCCAAACCTTTCGGAAG+AGG | + | chr3.2:69624368-69624387 | None:intergenic | 45.0% | |
GCATTGTTGAACTCAGGTGA+GGG | + | chr3.2:69623711-69623730 | None:intergenic | 45.0% | |
TCAGCTGCATTGTTGAACTC+AGG | + | chr3.2:69623717-69623736 | None:intergenic | 45.0% | |
TGAGTTCAACAATGCAGCTG+AGG | - | chr3.2:69623716-69623735 | MS.gene25890:intron | 45.0% | |
TGCATTGTTGAACTCAGGTG+AGG | + | chr3.2:69623712-69623731 | None:intergenic | 45.0% | |
TGTGTCTTGGAATGCTGCAA+CGG | - | chr3.2:69625430-69625449 | MS.gene25890:CDS | 45.0% | |
TTCTGAACCACCTTGTGTCT+TGG | - | chr3.2:69625417-69625436 | MS.gene25890:intron | 45.0% | |
TTGCAGCATTCCAAGACACA+AGG | + | chr3.2:69625430-69625449 | None:intergenic | 45.0% | |
TTTAGCAAGACAGGGAGAAG+GGG | + | chr3.2:69624576-69624595 | None:intergenic | 45.0% | |
TTTGAACGAACAGCTTGGGA+AGG | - | chr3.2:69623623-69623642 | MS.gene25890:intron | 45.0% | |
! | AAGCCTTATCCCACACAGAT+TGG | + | chr3.2:69624180-69624199 | None:intergenic | 45.0% |
! | AGCCTTATCCCACACAGATT+GGG | + | chr3.2:69624179-69624198 | None:intergenic | 45.0% |
! | ATGCCATTTGCCCAATTGTG+TGG | - | chr3.2:69625029-69625048 | MS.gene25890:intron | 45.0% |
! | GGAGAGGCTTTTGTGAACTT+GGG | - | chr3.2:69625467-69625486 | MS.gene25890:CDS | 45.0% |
! | TGCCATTTGCCCAATTGTGT+GGG | - | chr3.2:69625030-69625049 | MS.gene25890:intron | 45.0% |
! | TTCTCACGTCGTGCAACTTT+TGG | - | chr3.2:69625362-69625381 | MS.gene25890:intron | 45.0% |
!! | AACTTGGTGCACTAAATCGC+CGG | + | chr3.2:69624910-69624929 | None:intergenic | 45.0% |
ACCCCACACAATTGGGCAAA+TGG | + | chr3.2:69625035-69625054 | None:intergenic | 50.0% | |
AGCAGACAATCGACATGCAC+TGG | - | chr3.2:69623571-69623590 | MS.gene25890:intron | 50.0% | |
CAGACAATCGACATGCACTG+GGG | - | chr3.2:69623573-69623592 | MS.gene25890:intron | 50.0% | |
CAGCATTCCAAGACACAAGG+TGG | + | chr3.2:69625427-69625446 | None:intergenic | 50.0% | |
GCAGACAATCGACATGCACT+GGG | - | chr3.2:69623572-69623591 | MS.gene25890:intron | 50.0% | |
GCCATTTGCCCAATTGTGTG+GGG | - | chr3.2:69625031-69625050 | MS.gene25890:intron | 50.0% | |
GCGTCTTCCCCATTCATAAC+CGG | - | chr3.2:69623891-69623910 | MS.gene25890:intron | 50.0% | |
GGAGGTGATATGCCCATTCT+AGG | - | chr3.2:69624420-69624439 | MS.gene25890:intron | 50.0% | |
TGCAACGGAACGCTTGACAT+GGG | - | chr3.2:69625445-69625464 | MS.gene25890:CDS | 50.0% | |
TGCCCAATCTGTGTGGGATA+AGG | - | chr3.2:69624174-69624193 | MS.gene25890:intron | 50.0% | |
TTAGCAAGACAGGGAGAAGG+GGG | + | chr3.2:69624575-69624594 | None:intergenic | 50.0% | |
! | CTTCTGGGAATCCATGCAAC+CGG | - | chr3.2:69624395-69624414 | MS.gene25890:intron | 50.0% |
! | GGGAGAGGCTTTTGTGAACT+TGG | - | chr3.2:69625466-69625485 | MS.gene25890:CDS | 50.0% |
! | TTCTGGGAATCCATGCAACC+GGG | - | chr3.2:69624396-69624415 | MS.gene25890:intron | 50.0% |
!! | TGTTTGGTTCTGGCTGGGTT+TGG | - | chr3.2:69624520-69624539 | MS.gene25890:intron | 50.0% |
ATGGGCATATCACCTCCTCC+CGG | + | chr3.2:69624417-69624436 | None:intergenic | 55.0% | |
CTGCAACGGAACGCTTGACA+TGG | - | chr3.2:69625444-69625463 | MS.gene25890:CDS | 55.0% | |
GACTCTCGGGCACAAGTTTC+CGG | + | chr3.2:69623913-69623932 | None:intergenic | 55.0% | |
GCAACGGAACGCTTGACATG+GGG | - | chr3.2:69625446-69625465 | MS.gene25890:CDS | 55.0% | |
!! | TGCACTGGGGAGAGCATCAT+CGG | - | chr3.2:69623586-69623605 | MS.gene25890:intron | 55.0% |
ATCACCTCCTCCCGGTTGCA+TGG | + | chr3.2:69624409-69624428 | None:intergenic | 60.0% | |
GAATCCATGCAACCGGGAGG+AGG | - | chr3.2:69624402-69624421 | MS.gene25890:intron | 60.0% | |
GGAACGCTTGACATGGGGAG+AGG | - | chr3.2:69625451-69625470 | MS.gene25890:CDS | 60.0% | |
TGGGAATCCATGCAACCGGG+AGG | - | chr3.2:69624399-69624418 | MS.gene25890:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 69622411 | 69625514 | 69622411 | ID=MS.gene25890 |
chr3.2 | mRNA | 69622411 | 69625514 | 69622411 | ID=MS.gene25890.t1;Parent=MS.gene25890 |
chr3.2 | exon | 69625419 | 69625514 | 69625419 | ID=MS.gene25890.t1.exon1;Parent=MS.gene25890.t1 |
chr3.2 | CDS | 69625419 | 69625514 | 69625419 | ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1 |
chr3.2 | exon | 69624781 | 69624858 | 69624781 | ID=MS.gene25890.t1.exon2;Parent=MS.gene25890.t1 |
chr3.2 | CDS | 69624781 | 69624858 | 69624781 | ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1 |
chr3.2 | exon | 69624188 | 69624379 | 69624188 | ID=MS.gene25890.t1.exon3;Parent=MS.gene25890.t1 |
chr3.2 | CDS | 69624188 | 69624379 | 69624188 | ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1 |
chr3.2 | exon | 69623376 | 69623547 | 69623376 | ID=MS.gene25890.t1.exon4;Parent=MS.gene25890.t1 |
chr3.2 | CDS | 69623376 | 69623547 | 69623376 | ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1 |
chr3.2 | exon | 69622865 | 69622938 | 69622865 | ID=MS.gene25890.t1.exon5;Parent=MS.gene25890.t1 |
chr3.2 | CDS | 69622865 | 69622938 | 69622865 | ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1 |
chr3.2 | exon | 69622759 | 69622785 | 69622759 | ID=MS.gene25890.t1.exon6;Parent=MS.gene25890.t1 |
chr3.2 | CDS | 69622759 | 69622785 | 69622759 | ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1 |
chr3.2 | exon | 69622618 | 69622641 | 69622618 | ID=MS.gene25890.t1.exon7;Parent=MS.gene25890.t1 |
chr3.2 | CDS | 69622618 | 69622641 | 69622618 | ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1 |
chr3.2 | exon | 69622411 | 69622536 | 69622411 | ID=MS.gene25890.t1.exon8;Parent=MS.gene25890.t1 |
chr3.2 | CDS | 69622411 | 69622536 | 69622411 | ID=cds.MS.gene25890.t1;Parent=MS.gene25890.t1 |
Gene Sequence |
Protein sequence |