Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43933.t1 | XP_003613352.1 | 95.1 | 223 | 11 | 0 | 1 | 223 | 1 | 223 | 2.00E-106 | 396.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43933.t1 | G7K465 | 95.1 | 223 | 11 | 0 | 1 | 223 | 1 | 223 | 1.5e-106 | 396.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene43933 | 0.80653 | 7.87E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene43933 | 0.811013 | 8.66E-51 | -1.69E-46 |
| MS.gene049260 | MS.gene43933 | 0.820619 | 6.23E-53 | -1.69E-46 |
| MS.gene049297 | MS.gene43933 | 0.851293 | 9.75E-61 | -1.69E-46 |
| MS.gene04933 | MS.gene43933 | 0.811751 | 5.99E-51 | -1.69E-46 |
| MS.gene049346 | MS.gene43933 | 0.800439 | 1.44E-48 | -1.69E-46 |
| MS.gene049351 | MS.gene43933 | 0.852895 | 3.42E-61 | -1.69E-46 |
| MS.gene049389 | MS.gene43933 | 0.813754 | 2.18E-51 | -1.69E-46 |
| MS.gene049491 | MS.gene43933 | 0.824229 | 9.04E-54 | -1.69E-46 |
| MS.gene049681 | MS.gene43933 | 0.819937 | 8.93E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene43933 | 0.83795 | 3.84E-57 | -1.69E-46 |
| MS.gene049910 | MS.gene43933 | 0.815163 | 1.06E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene43933 | 0.808541 | 2.94E-50 | -1.69E-46 |
| MS.gene050099 | MS.gene43933 | 0.880266 | 6.32E-70 | -1.69E-46 |
| MS.gene050231 | MS.gene43933 | 0.843517 | 1.33E-58 | -1.69E-46 |
| MS.gene050301 | MS.gene43933 | 0.91179 | 4.08E-83 | -1.69E-46 |
| MS.gene050432 | MS.gene43933 | 0.800404 | 1.46E-48 | -1.69E-46 |
| MS.gene050516 | MS.gene43933 | 0.801758 | 7.74E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene43933 | 0.855868 | 4.73E-62 | -1.69E-46 |
| MS.gene050560 | MS.gene43933 | 0.814869 | 1.24E-51 | -1.69E-46 |
| MS.gene050650 | MS.gene43933 | 0.802984 | 4.33E-49 | -1.69E-46 |
| MS.gene050783 | MS.gene43933 | 0.800818 | 1.21E-48 | -1.69E-46 |
| MS.gene050812 | MS.gene43933 | 0.805318 | 1.41E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene43933 | 0.87293 | 2.18E-67 | -1.69E-46 |
| MS.gene051471 | MS.gene43933 | 0.845623 | 3.62E-59 | -1.69E-46 |
| MS.gene051582 | MS.gene43933 | 0.828718 | 7.69E-55 | -1.69E-46 |
| MS.gene051662 | MS.gene43933 | 0.826456 | 2.69E-54 | -1.69E-46 |
| MS.gene051663 | MS.gene43933 | 0.85344 | 2.39E-61 | -1.69E-46 |
| MS.gene051860 | MS.gene43933 | 0.846721 | 1.82E-59 | -1.69E-46 |
| MS.gene052051 | MS.gene43933 | 0.80311 | 4.08E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene43933 | 0.850918 | 1.24E-60 | -1.69E-46 |
| MS.gene052178 | MS.gene43933 | 0.822794 | 1.96E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene43933 | 0.852916 | 3.37E-61 | -1.69E-46 |
| MS.gene052207 | MS.gene43933 | 0.852392 | 4.76E-61 | -1.69E-46 |
| MS.gene052253 | MS.gene43933 | 0.829895 | 3.99E-55 | -1.69E-46 |
| MS.gene052287 | MS.gene43933 | 0.802432 | 5.63E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene43933 | 0.834225 | 3.39E-56 | -1.69E-46 |
| MS.gene052326 | MS.gene43933 | 0.829851 | 4.08E-55 | -1.69E-46 |
| MS.gene052340 | MS.gene43933 | 0.825549 | 4.41E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene43933 | 0.822273 | 2.59E-53 | -1.69E-46 |
| MS.gene052600 | MS.gene43933 | 0.805967 | 1.03E-49 | -1.69E-46 |
| MS.gene052789 | MS.gene43933 | 0.814545 | 1.46E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene43933 | 0.803557 | 3.29E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene43933 | 0.803493 | 3.40E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene43933 | 0.890773 | 7.28E-74 | -1.69E-46 |
| MS.gene053928 | MS.gene43933 | 0.837023 | 6.64E-57 | -1.69E-46 |
| MS.gene054010 | MS.gene43933 | 0.809032 | 2.31E-50 | -1.69E-46 |
| MS.gene054011 | MS.gene43933 | 0.821617 | 3.67E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene43933 | 0.807383 | 5.19E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene43933 | 0.805248 | 1.46E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene43933 | 0.836442 | 9.34E-57 | -1.69E-46 |
| MS.gene054473 | MS.gene43933 | 0.840791 | 7.03E-58 | -1.69E-46 |
| MS.gene05455 | MS.gene43933 | 0.858005 | 1.11E-62 | -1.69E-46 |
| MS.gene054942 | MS.gene43933 | 0.850349 | 1.80E-60 | -1.69E-46 |
| MS.gene055116 | MS.gene43933 | 0.820543 | 6.49E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene43933 | 0.85803 | 1.09E-62 | -1.69E-46 |
| MS.gene055303 | MS.gene43933 | 0.843005 | 1.83E-58 | -1.69E-46 |
| MS.gene055390 | MS.gene43933 | 0.867318 | 1.49E-65 | -1.69E-46 |
| MS.gene055422 | MS.gene43933 | 0.899459 | 1.94E-77 | -1.69E-46 |
| MS.gene055428 | MS.gene43933 | 0.890945 | 6.23E-74 | -1.69E-46 |
| MS.gene05553 | MS.gene43933 | 0.801115 | 1.05E-48 | -1.69E-46 |
| MS.gene055604 | MS.gene43933 | 0.852412 | 4.70E-61 | -1.69E-46 |
| MS.gene055712 | MS.gene43933 | 0.805302 | 1.43E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene43933 | 0.818135 | 2.30E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene43933 | 0.834817 | 2.41E-56 | -1.69E-46 |
| MS.gene056410 | MS.gene43933 | 0.8025 | 5.45E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene43933 | 0.835013 | 2.15E-56 | -1.69E-46 |
| MS.gene056902 | MS.gene43933 | 0.803338 | 3.66E-49 | -1.69E-46 |
| MS.gene056931 | MS.gene43933 | 0.812253 | 4.65E-51 | -1.69E-46 |
| MS.gene056933 | MS.gene43933 | 0.810306 | 1.23E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene43933 | 0.805092 | 1.58E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene43933 | 0.835421 | 1.70E-56 | -1.69E-46 |
| MS.gene057121 | MS.gene43933 | 0.893141 | 8.28E-75 | -1.69E-46 |
| MS.gene057245 | MS.gene43933 | 0.854469 | 1.21E-61 | -1.69E-46 |
| MS.gene05733 | MS.gene43933 | 0.814967 | 1.18E-51 | -1.69E-46 |
| MS.gene057439 | MS.gene43933 | 0.847196 | 1.35E-59 | -1.69E-46 |
| MS.gene057448 | MS.gene43933 | 0.822628 | 2.14E-53 | -1.69E-46 |
| MS.gene057449 | MS.gene43933 | 0.800679 | 1.29E-48 | -1.69E-46 |
| MS.gene057450 | MS.gene43933 | 0.828036 | 1.12E-54 | -1.69E-46 |
| MS.gene057469 | MS.gene43933 | 0.848126 | 7.48E-60 | -1.69E-46 |
| MS.gene057749 | MS.gene43933 | 0.82447 | 7.93E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene43933 | 0.818823 | 1.60E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene43933 | 0.897229 | 1.72E-76 | -1.69E-46 |
| MS.gene05811 | MS.gene43933 | 0.901372 | 2.86E-78 | -1.69E-46 |
| MS.gene058142 | MS.gene43933 | 0.870137 | 1.83E-66 | -1.69E-46 |
| MS.gene058233 | MS.gene43933 | 0.807395 | 5.16E-50 | -1.69E-46 |
| MS.gene058276 | MS.gene43933 | 0.844708 | 6.40E-59 | -1.69E-46 |
| MS.gene058293 | MS.gene43933 | 0.830025 | 3.70E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene43933 | 0.854515 | 1.17E-61 | -1.69E-46 |
| MS.gene058749 | MS.gene43933 | 0.810712 | 1.01E-50 | -1.69E-46 |
| MS.gene058833 | MS.gene43933 | 0.841965 | 3.45E-58 | -1.69E-46 |
| MS.gene058845 | MS.gene43933 | 0.809258 | 2.07E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene43933 | 0.885034 | 1.15E-71 | -1.69E-46 |
| MS.gene058993 | MS.gene43933 | 0.812983 | 3.22E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene43933 | 0.87231 | 3.51E-67 | -1.69E-46 |
| MS.gene059141 | MS.gene43933 | 0.811054 | 8.48E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene43933 | 0.804701 | 1.90E-49 | -1.69E-46 |
| MS.gene059342 | MS.gene43933 | 0.815308 | 9.88E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene43933 | 0.805025 | 1.63E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene43933 | 0.871995 | 4.47E-67 | -1.69E-46 |
| MS.gene059597 | MS.gene43933 | 0.852662 | 3.98E-61 | -1.69E-46 |
| MS.gene059676 | MS.gene43933 | 0.838397 | 2.95E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene43933 | 0.833571 | 4.94E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene43933 | 0.841267 | 5.27E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene43933 | 0.8394 | 1.62E-57 | -1.69E-46 |
| MS.gene05984 | MS.gene43933 | 0.865868 | 4.32E-65 | -1.69E-46 |
| MS.gene059894 | MS.gene43933 | 0.853726 | 1.98E-61 | -1.69E-46 |
| MS.gene059974 | MS.gene43933 | 0.81271 | 3.70E-51 | -1.69E-46 |
| MS.gene060005 | MS.gene43933 | 0.801104 | 1.05E-48 | -1.69E-46 |
| MS.gene06037 | MS.gene43933 | 0.836203 | 1.07E-56 | -1.69E-46 |
| MS.gene060407 | MS.gene43933 | 0.841315 | 5.12E-58 | -1.69E-46 |
| MS.gene060476 | MS.gene43933 | 0.804154 | 2.48E-49 | -1.69E-46 |
| MS.gene060559 | MS.gene43933 | 0.828286 | 9.78E-55 | -1.69E-46 |
| MS.gene06090 | MS.gene43933 | 0.803316 | 3.70E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene43933 | 0.859254 | 4.70E-63 | -1.69E-46 |
| MS.gene061159 | MS.gene43933 | 0.810888 | 9.21E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43933 | MS.gene56742 | PPI |
| MS.gene43933 | MS.gene51249 | PPI |
| MS.gene43933 | MS.gene44409 | PPI |
| MS.gene43933 | MS.gene44411 | PPI |
| MS.gene43933 | MS.gene44410 | PPI |
| MS.gene43933 | MS.gene042404 | PPI |
| MS.gene43933 | MS.gene029233 | PPI |
| MS.gene43933 | MS.gene20554 | PPI |
| MS.gene43933 | MS.gene78297 | PPI |
| MS.gene43933 | MS.gene05395 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43933.t1 | MTR_5g035590 | 96.774 | 589 | 19 | 0 | 1 | 589 | 1 | 589 | 0.0 | 1153 |
| MS.gene43933.t1 | MTR_5g035590 | 97.573 | 412 | 10 | 0 | 178 | 589 | 1 | 412 | 0.0 | 808 |
| MS.gene43933.t1 | MTR_5g035590 | 31.638 | 177 | 120 | 1 | 166 | 341 | 214 | 390 | 2.65e-17 | 85.1 |
| MS.gene43933.t1 | MTR_1g105040 | 27.509 | 269 | 195 | 0 | 204 | 472 | 217 | 485 | 7.55e-24 | 106 |
| MS.gene43933.t1 | MTR_1g105040 | 26.441 | 295 | 206 | 3 | 173 | 466 | 214 | 498 | 4.75e-22 | 100 |
| MS.gene43933.t1 | MTR_1g105040 | 27.213 | 305 | 209 | 5 | 229 | 524 | 181 | 481 | 3.04e-19 | 92.0 |
| MS.gene43933.t1 | MTR_1g105040 | 27.027 | 259 | 179 | 5 | 311 | 562 | 179 | 434 | 5.41e-16 | 81.6 |
| MS.gene43933.t1 | MTR_1g072250 | 25.815 | 399 | 258 | 7 | 153 | 543 | 134 | 502 | 6.44e-22 | 100 |
| MS.gene43933.t1 | MTR_1g072250 | 26.857 | 350 | 243 | 8 | 242 | 583 | 139 | 483 | 3.63e-19 | 91.7 |
| MS.gene43933.t1 | MTR_1g072250 | 25.000 | 320 | 236 | 3 | 151 | 467 | 192 | 510 | 1.97e-15 | 80.1 |
| MS.gene43933.t1 | MTR_1g072250 | 26.848 | 257 | 156 | 4 | 329 | 585 | 205 | 429 | 8.79e-12 | 68.6 |
| MS.gene43933.t1 | MTR_3g055970 | 24.402 | 418 | 261 | 16 | 145 | 524 | 60 | 460 | 2.98e-12 | 70.9 |
| MS.gene43933.t1 | MTR_3g055970 | 23.692 | 325 | 227 | 8 | 254 | 567 | 73 | 387 | 6.00e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43933.t1 | AT1G10510 | 68.121 | 596 | 172 | 5 | 2 | 589 | 3 | 588 | 0.0 | 815 |
| MS.gene43933.t1 | AT3G63130 | 27.372 | 274 | 199 | 0 | 204 | 477 | 214 | 487 | 1.68e-22 | 102 |
| MS.gene43933.t1 | AT3G63130 | 26.374 | 364 | 246 | 7 | 156 | 505 | 132 | 487 | 5.50e-22 | 100 |
| MS.gene43933.t1 | AT3G63130 | 29.391 | 279 | 188 | 7 | 308 | 583 | 206 | 478 | 3.04e-19 | 92.0 |
| MS.gene43933.t1 | AT3G63130 | 25.413 | 303 | 222 | 3 | 151 | 450 | 187 | 488 | 1.88e-18 | 89.7 |
| MS.gene43933.t1 | AT3G63130 | 26.538 | 260 | 177 | 6 | 329 | 583 | 200 | 450 | 2.13e-16 | 83.2 |
| MS.gene43933.t1 | AT3G63130 | 27.372 | 274 | 199 | 0 | 204 | 477 | 214 | 487 | 1.68e-22 | 102 |
| MS.gene43933.t1 | AT3G63130 | 26.374 | 364 | 246 | 7 | 156 | 505 | 132 | 487 | 5.50e-22 | 100 |
| MS.gene43933.t1 | AT3G63130 | 29.391 | 279 | 188 | 7 | 308 | 583 | 206 | 478 | 3.04e-19 | 92.0 |
| MS.gene43933.t1 | AT3G63130 | 25.413 | 303 | 222 | 3 | 151 | 450 | 187 | 488 | 1.88e-18 | 89.7 |
| MS.gene43933.t1 | AT3G63130 | 26.538 | 260 | 177 | 6 | 329 | 583 | 200 | 450 | 2.13e-16 | 83.2 |
| MS.gene43933.t1 | AT5G19320 | 26.182 | 275 | 202 | 1 | 204 | 477 | 219 | 493 | 1.64e-20 | 96.3 |
| MS.gene43933.t1 | AT5G19320 | 28.028 | 289 | 204 | 4 | 219 | 505 | 207 | 493 | 2.16e-17 | 86.3 |
| MS.gene43933.t1 | AT5G19320 | 25.899 | 278 | 200 | 5 | 308 | 583 | 211 | 484 | 7.13e-12 | 68.9 |
| MS.gene43933.t1 | AT5G19320 | 26.182 | 275 | 202 | 1 | 204 | 477 | 219 | 493 | 1.64e-20 | 96.3 |
| MS.gene43933.t1 | AT5G19320 | 28.028 | 289 | 204 | 4 | 219 | 505 | 207 | 493 | 2.16e-17 | 86.3 |
| MS.gene43933.t1 | AT5G19320 | 25.899 | 278 | 200 | 5 | 308 | 583 | 211 | 484 | 7.13e-12 | 68.9 |
| MS.gene43933.t1 | AT5G55540 | 23.775 | 408 | 259 | 11 | 163 | 524 | 63 | 464 | 9.73e-14 | 75.5 |
| MS.gene43933.t1 | AT5G55540 | 23.775 | 408 | 259 | 11 | 163 | 524 | 63 | 464 | 9.76e-14 | 75.5 |
Find 157 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAATTTCCTTACCAAATT+TGG | 0.106216 | 5.4:-25410140 | MS.gene43933:CDS |
| CCTGGCACCAACCAAGTTTA+AGG | 0.149470 | 5.4:+25410658 | None:intergenic |
| ATTTAGGATTTAATGAAATA+AGG | 0.199745 | 5.4:-25410315 | MS.gene43933:CDS |
| GGACGGTTCCGGGCGGTTTA+CGG | 0.214235 | 5.4:-25407175 | MS.gene43933:CDS |
| CTGAAGACTCTTGATCTTTC+AGG | 0.215065 | 5.4:-25414636 | MS.gene43933:CDS |
| GGCAACTACGGTGGTGCTTT+GGG | 0.215447 | 5.4:-25412743 | MS.gene43933:CDS |
| AAATAGTACCTGACCAAATT+TGG | 0.219290 | 5.4:+25410127 | None:intergenic |
| GCCAAGGCCTTGGCTCCATC+TGG | 0.233421 | 5.4:+25410714 | None:intergenic |
| GCTCTAACCTCGCTAGATTT+AGG | 0.247395 | 5.4:-25410331 | MS.gene43933:CDS |
| CGCCGAAGACCGTTTGGTTT+AGG | 0.260455 | 5.4:-25418279 | MS.gene43933:CDS |
| CGAACTTCGACACGTGCTTC+TGG | 0.268208 | 5.4:-25418222 | MS.gene43933:CDS |
| GGGTGGACAGCGGACGGTTC+CGG | 0.273549 | 5.4:-25407186 | MS.gene43933:CDS |
| TTTCTTCATTTGTTAAGTTC+TGG | 0.284217 | 5.4:+25406985 | None:intergenic |
| TGGCAACTACGGTGGTGCTT+TGG | 0.285432 | 5.4:-25412744 | MS.gene43933:CDS |
| GACGGTTCCGGGCGGTTTAC+GGG | 0.286602 | 5.4:-25407174 | MS.gene43933:CDS |
| GCTTACAGTTATCTGGAAAT+TGG | 0.290180 | 5.4:-25417110 | MS.gene43933:intron |
| CGCCGGTTGCAATCGCTTGC+CGG | 0.291440 | 5.4:-25418339 | MS.gene43933:CDS |
| TTTAGGATTTAATGAAATAA+GGG | 0.296450 | 5.4:-25410314 | MS.gene43933:intron |
| GGTGGACAGCGGACGGTTCC+GGG | 0.299265 | 5.4:-25407185 | MS.gene43933:CDS |
| GTCGCAGACTTTGATTGCTT+TGG | 0.305875 | 5.4:+25417064 | None:intergenic |
| CATTTGCACGGAAATTCTAT+TGG | 0.306066 | 5.4:-25412357 | MS.gene43933:CDS |
| AACGAATTGGACGGCGGTTC+CGG | 0.307180 | 5.4:+25418320 | None:intergenic |
| TGTAAATGTTCAACCATAAC+AGG | 0.310031 | 5.4:+25412099 | None:intergenic |
| TTGAGGGCAACAAGTCTATA+AGG | 0.312274 | 5.4:-25412697 | MS.gene43933:CDS |
| AACTTACTTGCGGCGGTTGC+GGG | 0.315570 | 5.4:+25418457 | None:intergenic |
| CAAATTTGTTGTCTCAGCTT+GGG | 0.325903 | 5.4:-25416988 | MS.gene43933:CDS |
| GCCACGAATGTTGCTCCGTT+TGG | 0.350546 | 5.4:-25418132 | MS.gene43933:CDS |
| AAAGGTGCTTTCTATGTTGC+TGG | 0.354044 | 5.4:-25412143 | MS.gene43933:CDS |
| CTTGGCTCCATCTGGGCCAA+TGG | 0.354591 | 5.4:+25410722 | None:intergenic |
| TTCTAGAAGCTTCGTGGTTA+AGG | 0.356055 | 5.4:-25418250 | MS.gene43933:CDS |
| GATGTGGCAGGGCGCAATTT+TGG | 0.358772 | 5.4:-25416224 | MS.gene43933:intron |
| TAACTTACTTGCGGCGGTTG+CGG | 0.363077 | 5.4:+25418456 | None:intergenic |
| GAGGTAGGGGTTTACAAGTC+TGG | 0.364818 | 5.4:-25413007 | MS.gene43933:intron |
| CTGAATCGCCGAAGACCGTT+TGG | 0.365424 | 5.4:-25418285 | MS.gene43933:CDS |
| CCCAGATGGAGCCAAGGCCT+TGG | 0.365753 | 5.4:-25410715 | MS.gene43933:CDS |
| ACAAATTTGTTGTCTCAGCT+TGG | 0.371288 | 5.4:-25416989 | MS.gene43933:CDS |
| TTGGCTCCATCTGGGCCAAT+GGG | 0.371339 | 5.4:+25410723 | None:intergenic |
| TAATACCACAATATCAGTTC+TGG | 0.377304 | 5.4:-25410514 | MS.gene43933:CDS |
| CATTCAGTTTCTGTTTAGAT+TGG | 0.379274 | 5.4:+25416951 | None:intergenic |
| GATTGCGGTTTCAGCGGGTT+TGG | 0.383849 | 5.4:-25407073 | MS.gene43933:CDS |
| CTGGCACCAACCAAGTTTAA+GGG | 0.383995 | 5.4:+25410659 | None:intergenic |
| AAAAGATCAAAAGCCTGTTA+TGG | 0.385142 | 5.4:-25412112 | MS.gene43933:CDS |
| GTCAATAACGACATTAGATA+TGG | 0.393048 | 5.4:-25411010 | MS.gene43933:intron |
| TCATGTTGTTGTTAAGTTCA+AGG | 0.398037 | 5.4:+25413130 | None:intergenic |
| CTCTCGTCCAACACAATGTT+CGG | 0.400559 | 5.4:-25407103 | MS.gene43933:CDS |
| ATTGCAACCGTCGGTTGAAT+CGG | 0.401208 | 5.4:+25407137 | None:intergenic |
| CAGATGCTTTAAAGGAAAAT+CGG | 0.404566 | 5.4:-25411032 | MS.gene43933:CDS |
| TATAACTTCGGCCAAGGCCT+TGG | 0.408081 | 5.4:+25410704 | None:intergenic |
| TCAGGCGGATGCAACGCTTT+CGG | 0.409173 | 5.4:-25418175 | MS.gene43933:CDS |
| CAGCGGGTTTGGCGAATGAT+CGG | 0.416267 | 5.4:-25407062 | MS.gene43933:CDS |
| CGACACGTGCTTCTGGTTCT+CGG | 0.421744 | 5.4:-25418215 | MS.gene43933:CDS |
| CGGTTTACGGGTTCAAAAGC+TGG | 0.428392 | 5.4:-25407162 | MS.gene43933:CDS |
| GACTTTGATTGCTTTGGAGT+TGG | 0.431608 | 5.4:+25417070 | None:intergenic |
| TTCCGGCAAGCGATTGCAAC+CGG | 0.432702 | 5.4:+25418337 | None:intergenic |
| AGCGGGTTTGGCGAATGATC+GGG | 0.434003 | 5.4:-25407061 | MS.gene43933:CDS |
| ATTGCAGGGTGCATTGTGTC+TGG | 0.434962 | 5.4:-25410380 | MS.gene43933:intron |
| GGCAATCCTGTTGGAGATGA+AGG | 0.435902 | 5.4:-25414615 | MS.gene43933:CDS |
| TTAACGATTGCGGTTTCAGC+GGG | 0.436437 | 5.4:-25407078 | MS.gene43933:CDS |
| TCAGCTAAACAGTGCTGACT+TGG | 0.441759 | 5.4:-25413508 | MS.gene43933:CDS |
| AGACCGTTTGGTTTAGGAGC+AGG | 0.442226 | 5.4:-25418273 | MS.gene43933:CDS |
| GGAATTCGTTCTTTGATGAC+TGG | 0.448428 | 5.4:-25412327 | MS.gene43933:CDS |
| CTTATGCAGATAGGAGCAAA+AGG | 0.448593 | 5.4:-25410567 | MS.gene43933:intron |
| GCAACTACGGTGGTGCTTTG+GGG | 0.449523 | 5.4:-25412742 | MS.gene43933:CDS |
| TCAATCCTTGTGAAGCAGAC+TGG | 0.451465 | 5.4:+25417032 | None:intergenic |
| CAAGCGATTGCAACCGGCGG+CGG | 0.452096 | 5.4:+25418343 | None:intergenic |
| CTCCTAAACCAAACGGTCTT+CGG | 0.454472 | 5.4:+25418277 | None:intergenic |
| TTTCCTTACCAAATTTGGTC+AGG | 0.455058 | 5.4:-25410135 | MS.gene43933:intron |
| CTGCTTCACAAGGATTGAAA+TGG | 0.456014 | 5.4:-25417027 | MS.gene43933:CDS |
| GGAAATTCTATTGGAGATGA+AGG | 0.458044 | 5.4:-25412348 | MS.gene43933:CDS |
| TGCAACGCTTTCGGTTGCTT+CGG | 0.462705 | 5.4:-25418166 | MS.gene43933:CDS |
| CCTTAAACTTGGTTGGTGCC+AGG | 0.465386 | 5.4:-25410658 | MS.gene43933:intron |
| GGAAATAACATTCATGGTGT+TGG | 0.469506 | 5.4:-25410896 | MS.gene43933:CDS |
| TTAGCTCCTTCATCTCCAAC+AGG | 0.469951 | 5.4:+25414609 | None:intergenic |
| TCAGCTTGGGGCGAAGATTG+AGG | 0.471276 | 5.4:-25416975 | MS.gene43933:CDS |
| GTTCTGGACTTACGAGCAAA+TGG | 0.472854 | 5.4:-25410498 | MS.gene43933:CDS |
| CCAAGGCCTTGGCTCCATCT+GGG | 0.475782 | 5.4:+25410715 | None:intergenic |
| ATTCTTTCTTGCGGAGAGCT+TGG | 0.477259 | 5.4:-25416189 | MS.gene43933:CDS |
| CAGCTTGGGGCGAAGATTGA+GGG | 0.477389 | 5.4:-25416974 | MS.gene43933:CDS |
| CAGGGAGGAAATAACATTCA+TGG | 0.481188 | 5.4:-25410902 | MS.gene43933:CDS |
| GAGAGTTTATCGCGAGTCTC+AGG | 0.483584 | 5.4:-25418193 | MS.gene43933:CDS |
| TGTAGCTTCGTCTCCGCCGC+CGG | 0.485091 | 5.4:-25418356 | MS.gene43933:intron |
| TTTAACGATTGCGGTTTCAG+CGG | 0.488098 | 5.4:-25407079 | MS.gene43933:CDS |
| GAACTTAGTTATAATCCCAT+TGG | 0.491304 | 5.4:-25410738 | MS.gene43933:CDS |
| GCAAATGGAATAACTGCTGC+TGG | 0.492022 | 5.4:-25414699 | MS.gene43933:CDS |
| GAGTCGGAAGGATAACGAAT+TGG | 0.496132 | 5.4:+25418307 | None:intergenic |
| TCCATGGAACTTTATAACTT+CGG | 0.498470 | 5.4:+25410692 | None:intergenic |
| AACAACTCATTGACAGCTAA+AGG | 0.500253 | 5.4:-25412161 | MS.gene43933:CDS |
| GCCGAAGTTATAAAGTTCCA+TGG | 0.510009 | 5.4:-25410693 | MS.gene43933:CDS |
| GTGTGAGTAAAGAGAGAGAG+TGG | 0.511008 | 5.4:+25418479 | None:intergenic |
| CAACTACGGTGGTGCTTTGG+GGG | 0.511771 | 5.4:-25412741 | MS.gene43933:CDS |
| TTCGATTCAAGTGGCAACTA+CGG | 0.512684 | 5.4:-25412755 | MS.gene43933:intron |
| AGTGGAAGTGTTTAAAGACA+TGG | 0.513176 | 5.4:+25418497 | None:intergenic |
| CAGCTAAACAGTGCTGACTT+GGG | 0.514024 | 5.4:-25413507 | MS.gene43933:CDS |
| ATCTTTCAAAACTTTAGCAA+CGG | 0.514052 | 5.4:+25410865 | None:intergenic |
| TGCATTGGCTAAAGCACTTG+AGG | 0.518489 | 5.4:-25412714 | MS.gene43933:CDS |
| TATAATCCCATTGGCCCAGA+TGG | 0.518540 | 5.4:-25410729 | MS.gene43933:CDS |
| TAGGGGTTTACAAGTCTGGC+TGG | 0.518877 | 5.4:-25413003 | MS.gene43933:CDS |
| AAGGTGCTTTCTATGTTGCT+GGG | 0.521393 | 5.4:-25412142 | MS.gene43933:CDS |
| GTTTAGCTGAAGCTTCTCAA+TGG | 0.527253 | 5.4:+25413521 | None:intergenic |
| TCGTCAAACTCACAGGATGA+TGG | 0.528672 | 5.4:-25410230 | MS.gene43933:intron |
| TACAGTTATCTGGAAATTGG+TGG | 0.530008 | 5.4:-25417107 | MS.gene43933:intron |
| TGAGGGCAACAAGTCTATAA+GGG | 0.535265 | 5.4:-25412696 | MS.gene43933:intron |
| GGAGAGCTTGGCATTTAACC+AGG | 0.535384 | 5.4:-25416177 | MS.gene43933:intron |
| AACATTCATGGTGTTGGAGT+TGG | 0.536123 | 5.4:-25410890 | MS.gene43933:CDS |
| AAATTTGTTGTCTCAGCTTG+GGG | 0.537078 | 5.4:-25416987 | MS.gene43933:CDS |
| GATCTTTCAGGCAATCCTGT+TGG | 0.539593 | 5.4:-25414624 | MS.gene43933:CDS |
| TCGGGCGGATTATAGCGGTT+TGG | 0.540294 | 5.4:-25407043 | MS.gene43933:CDS |
| GCATTGGCTAAAGCACTTGA+GGG | 0.543471 | 5.4:-25412713 | MS.gene43933:CDS |
| AGCTAAACAGTGCTGACTTG+GGG | 0.548080 | 5.4:-25413506 | MS.gene43933:CDS |
| TGAAGGATTATTCTTTCTTG+CGG | 0.550404 | 5.4:-25416198 | MS.gene43933:CDS |
| AACATTTACATGAATGACAT+TGG | 0.551290 | 5.4:-25412086 | MS.gene43933:CDS |
| GTTAAAACCGAACATTGTGT+TGG | 0.557842 | 5.4:+25407096 | None:intergenic |
| AAACTTACACTTCTAGACAT+AGG | 0.558147 | 5.4:-25412185 | MS.gene43933:CDS |
| TTATGCAGATAGGAGCAAAA+GGG | 0.560047 | 5.4:-25410566 | MS.gene43933:intron |
| GTACCTGACCAAATTTGGTA+AGG | 0.565710 | 5.4:+25410132 | None:intergenic |
| AGCAGGTTCTAGAAGCTTCG+TGG | 0.572221 | 5.4:-25418256 | MS.gene43933:CDS |
| AGTGCTAAGAACACTCCAAA+CGG | 0.573474 | 5.4:+25418117 | None:intergenic |
| TAGCTGAAGCTTCTCAATGG+TGG | 0.574007 | 5.4:+25413524 | None:intergenic |
| TCCAAACGGAGCAACATTCG+TGG | 0.576544 | 5.4:+25418131 | None:intergenic |
| GAACCTGCTCCTAAACCAAA+CGG | 0.577145 | 5.4:+25418270 | None:intergenic |
| TGTTGGAGATGAAGGAGCTA+AGG | 0.580011 | 5.4:-25414607 | MS.gene43933:intron |
| CATTGGCCCAGATGGAGCCA+AGG | 0.586640 | 5.4:-25410721 | MS.gene43933:CDS |
| ATTAAATCCTAAATCTAGCG+AGG | 0.589016 | 5.4:+25410324 | None:intergenic |
| GAACTTTATAACTTCGGCCA+AGG | 0.589359 | 5.4:+25410698 | None:intergenic |
| GAAAGCCAGTCTGCTTCACA+AGG | 0.590388 | 5.4:-25417037 | MS.gene43933:CDS |
| AAGTAGGGGTGGACAGCGGA+CGG | 0.592690 | 5.4:-25407192 | MS.gene43933:intron |
| GGTCTTCGGCGATTCAGAGT+CGG | 0.599218 | 5.4:+25418291 | None:intergenic |
| AATGTGAAAACCCTTAAACT+TGG | 0.599464 | 5.4:-25410669 | MS.gene43933:CDS |
| TGAAAACCCTTAAACTTGGT+TGG | 0.600564 | 5.4:-25410665 | MS.gene43933:CDS |
| GTGTTCTTAGCACTTACCAT+CGG | 0.600836 | 5.4:-25418108 | MS.gene43933:intron |
| TTGTGTTGGACGAGAGCGGA+TGG | 0.609124 | 5.4:+25407110 | None:intergenic |
| GTGTCTATGTGACATACTGA+TGG | 0.618276 | 5.4:-25413553 | MS.gene43933:CDS |
| GCTGTCACATCTCTAAACAT+TGG | 0.622840 | 5.4:-25410164 | MS.gene43933:CDS |
| TATGCAGATAGGAGCAAAAG+GGG | 0.628011 | 5.4:-25410565 | MS.gene43933:intron |
| CGGCAAGCGATTGCAACCGG+CGG | 0.628871 | 5.4:+25418340 | None:intergenic |
| AATGATCGGGCGGATTATAG+CGG | 0.631338 | 5.4:-25407048 | MS.gene43933:CDS |
| ACTGGATTAACGTCACATAG+AGG | 0.632787 | 5.4:-25412309 | MS.gene43933:intron |
| CATGAATGACATTGGTGATG+AGG | 0.633304 | 5.4:-25412078 | MS.gene43933:intron |
| AACATTGTGTTGGACGAGAG+CGG | 0.633639 | 5.4:+25407106 | None:intergenic |
| GCTAAACAGTGCTGACTTGG+GGG | 0.640733 | 5.4:-25413505 | MS.gene43933:CDS |
| AGTTTATCGCGAGTCTCAGG+CGG | 0.642766 | 5.4:-25418190 | MS.gene43933:CDS |
| CGGAAGGATAACGAATTGGA+CGG | 0.651382 | 5.4:+25418311 | None:intergenic |
| GCTGGAACCGATTCAACCGA+CGG | 0.653607 | 5.4:-25407144 | MS.gene43933:CDS |
| GATGGTTATATTGCAACCGT+CGG | 0.654791 | 5.4:+25407128 | None:intergenic |
| GATTCAAGTGGCAACTACGG+TGG | 0.655517 | 5.4:-25412752 | MS.gene43933:intron |
| GGACAGGAACTACATTTGCA+CGG | 0.660249 | 5.4:-25412369 | MS.gene43933:intron |
| ATGAGTTTGCTCGAGAACTG+AGG | 0.662789 | 5.4:-25416931 | MS.gene43933:CDS |
| GGGTTTGGCGAATGATCGGG+CGG | 0.673123 | 5.4:-25407058 | MS.gene43933:CDS |
| TAAGTCCAGAACTGATATTG+TGG | 0.673601 | 5.4:+25410509 | None:intergenic |
| TTCGGCGATTCAGAGTCGGA+AGG | 0.683412 | 5.4:+25418295 | None:intergenic |
| AGTTAGTAACTTACTTGCGG+CGG | 0.686730 | 5.4:+25418450 | None:intergenic |
| ATATACTATATAGACTGCAG+AGG | 0.689045 | 5.4:-25414736 | MS.gene43933:intron |
| GGACAGCGGACGGTTCCGGG+CGG | 0.712937 | 5.4:-25407182 | MS.gene43933:CDS |
| TTTGAAGTAGGGGTGGACAG+CGG | 0.714120 | 5.4:-25407196 | MS.gene43933:intron |
| TGTCTATGTGACATACTGAT+GGG | 0.736138 | 5.4:-25413552 | MS.gene43933:CDS |
| AAGGATAACGAATTGGACGG+CGG | 0.749420 | 5.4:+25418314 | None:intergenic |
| AAAAGGGGCAGAGTTCATTG+CGG | 0.749883 | 5.4:-25410550 | MS.gene43933:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 25406990 | 25418517 | 25406990 | ID=MS.gene43933 |
| chr5.4 | mRNA | 25406990 | 25418517 | 25406990 | ID=MS.gene43933.t1;Parent=MS.gene43933 |
| chr5.4 | exon | 25418464 | 25418517 | 25418464 | ID=MS.gene43933.t1.exon1;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25418464 | 25418517 | 25418464 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25418109 | 25418373 | 25418109 | ID=MS.gene43933.t1.exon2;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25418109 | 25418373 | 25418109 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25416906 | 25417124 | 25416906 | ID=MS.gene43933.t1.exon3;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25416906 | 25417124 | 25416906 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25416178 | 25416236 | 25416178 | ID=MS.gene43933.t1.exon4;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25416178 | 25416236 | 25416178 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25414608 | 25414745 | 25414608 | ID=MS.gene43933.t1.exon5;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25414608 | 25414745 | 25414608 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25413500 | 25413574 | 25413500 | ID=MS.gene43933.t1.exon6;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25413500 | 25413574 | 25413500 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25413119 | 25413202 | 25413119 | ID=MS.gene43933.t1.exon7;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25413119 | 25413202 | 25413119 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25412961 | 25413022 | 25412961 | ID=MS.gene43933.t1.exon8;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25412961 | 25413022 | 25412961 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25412697 | 25412766 | 25412697 | ID=MS.gene43933.t1.exon9;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25412697 | 25412766 | 25412697 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25412310 | 25412385 | 25412310 | ID=MS.gene43933.t1.exon10;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25412310 | 25412385 | 25412310 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25412079 | 25412209 | 25412079 | ID=MS.gene43933.t1.exon11;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25412079 | 25412209 | 25412079 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25411011 | 25411070 | 25411011 | ID=MS.gene43933.t1.exon12;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25411011 | 25411070 | 25411011 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25410847 | 25410921 | 25410847 | ID=MS.gene43933.t1.exon13;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25410847 | 25410921 | 25410847 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25410659 | 25410763 | 25410659 | ID=MS.gene43933.t1.exon14;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25410659 | 25410763 | 25410659 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25410485 | 25410580 | 25410485 | ID=MS.gene43933.t1.exon15;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25410485 | 25410580 | 25410485 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25410315 | 25410395 | 25410315 | ID=MS.gene43933.t1.exon16;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25410315 | 25410395 | 25410315 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25410136 | 25410237 | 25410136 | ID=MS.gene43933.t1.exon17;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25410136 | 25410237 | 25410136 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| chr5.4 | exon | 25406990 | 25407208 | 25406990 | ID=MS.gene43933.t1.exon18;Parent=MS.gene43933.t1 |
| chr5.4 | CDS | 25406990 | 25407208 | 25406990 | ID=cds.MS.gene43933.t1;Parent=MS.gene43933.t1 |
| Gene Sequence |
| Protein sequence |
