Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28998.t1 | XP_013460987.1 | 86.1 | 294 | 26 | 4 | 1 | 283 | 1 | 290 | 3.00E-131 | 478 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28998.t1 | Q0WWT7 | 58.8 | 296 | 105 | 4 | 1 | 283 | 1 | 292 | 5.2e-92 | 339.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28998.t1 | A0A072UZZ1 | 86.1 | 294 | 26 | 4 | 1 | 283 | 1 | 290 | 2.2e-131 | 478.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene28998 | 0.820889 | 5.40E-53 | -1.69E-46 |
| MS.gene049297 | MS.gene28998 | 0.815525 | 8.84E-52 | -1.69E-46 |
| MS.gene049351 | MS.gene28998 | 0.862661 | 4.33E-64 | -1.69E-46 |
| MS.gene049389 | MS.gene28998 | 0.827236 | 1.75E-54 | -1.69E-46 |
| MS.gene049491 | MS.gene28998 | 0.848199 | 7.14E-60 | -1.69E-46 |
| MS.gene049614 | MS.gene28998 | 0.808403 | 3.15E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene28998 | 0.818212 | 2.21E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene28998 | 0.815892 | 7.32E-52 | -1.69E-46 |
| MS.gene049681 | MS.gene28998 | 0.808499 | 3.01E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene28998 | 0.863774 | 1.96E-64 | -1.69E-46 |
| MS.gene049760 | MS.gene28998 | 0.801524 | 8.64E-49 | -1.69E-46 |
| MS.gene049910 | MS.gene28998 | 0.808529 | 2.96E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene28998 | 0.852208 | 5.37E-61 | -1.69E-46 |
| MS.gene050099 | MS.gene28998 | 0.876549 | 1.28E-68 | -1.69E-46 |
| MS.gene050128 | MS.gene28998 | 0.83519 | 1.94E-56 | -1.69E-46 |
| MS.gene050231 | MS.gene28998 | 0.817436 | 3.30E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene28998 | 0.918042 | 2.54E-86 | -1.69E-46 |
| MS.gene050397 | MS.gene28998 | 0.816265 | 6.04E-52 | -1.69E-46 |
| MS.gene050432 | MS.gene28998 | 0.822705 | 2.05E-53 | -1.69E-46 |
| MS.gene050464 | MS.gene28998 | 0.816866 | 4.43E-52 | -1.69E-46 |
| MS.gene050529 | MS.gene28998 | 0.819767 | 9.77E-53 | -1.69E-46 |
| MS.gene050558 | MS.gene28998 | 0.84866 | 5.32E-60 | -1.69E-46 |
| MS.gene050560 | MS.gene28998 | 0.808685 | 2.74E-50 | -1.69E-46 |
| MS.gene050650 | MS.gene28998 | 0.801713 | 7.91E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene28998 | 0.82497 | 6.05E-54 | -1.69E-46 |
| MS.gene050770 | MS.gene28998 | 0.82374 | 1.18E-53 | -1.69E-46 |
| MS.gene050783 | MS.gene28998 | 0.821535 | 3.84E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene28998 | 0.913663 | 4.74E-84 | -1.69E-46 |
| MS.gene051471 | MS.gene28998 | 0.87415 | 8.45E-68 | -1.69E-46 |
| MS.gene051582 | MS.gene28998 | 0.82397 | 1.04E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene28998 | 0.850122 | 2.08E-60 | -1.69E-46 |
| MS.gene051663 | MS.gene28998 | 0.866873 | 2.07E-65 | -1.69E-46 |
| MS.gene051860 | MS.gene28998 | 0.846185 | 2.55E-59 | -1.69E-46 |
| MS.gene051877 | MS.gene28998 | 0.811547 | 6.63E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene28998 | 0.880297 | 6.17E-70 | -1.69E-46 |
| MS.gene052178 | MS.gene28998 | 0.8663 | 3.15E-65 | -1.69E-46 |
| MS.gene052188 | MS.gene28998 | 0.825955 | 3.53E-54 | -1.69E-46 |
| MS.gene052207 | MS.gene28998 | 0.849662 | 2.80E-60 | -1.69E-46 |
| MS.gene052253 | MS.gene28998 | 0.816393 | 5.66E-52 | -1.69E-46 |
| MS.gene052287 | MS.gene28998 | 0.833523 | 5.08E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene28998 | 0.858509 | 7.84E-63 | -1.69E-46 |
| MS.gene052326 | MS.gene28998 | 0.897223 | 1.73E-76 | -1.69E-46 |
| MS.gene052340 | MS.gene28998 | 0.825904 | 3.64E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene28998 | 0.812845 | 3.45E-51 | -1.69E-46 |
| MS.gene052789 | MS.gene28998 | 0.809779 | 1.60E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene28998 | 0.808431 | 3.11E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene28998 | 0.805739 | 1.15E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene28998 | 0.8291 | 6.22E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene28998 | 0.894377 | 2.61E-75 | -1.69E-46 |
| MS.gene053907 | MS.gene28998 | 0.808439 | 3.10E-50 | -1.69E-46 |
| MS.gene053928 | MS.gene28998 | 0.811762 | 5.95E-51 | -1.69E-46 |
| MS.gene053971 | MS.gene28998 | 0.801513 | 8.69E-49 | -1.69E-46 |
| MS.gene054010 | MS.gene28998 | 0.8288 | 7.35E-55 | -1.69E-46 |
| MS.gene054011 | MS.gene28998 | 0.852 | 6.15E-61 | -1.69E-46 |
| MS.gene054012 | MS.gene28998 | 0.837978 | 3.78E-57 | -1.69E-46 |
| MS.gene054013 | MS.gene28998 | 0.839556 | 1.48E-57 | -1.69E-46 |
| MS.gene054123 | MS.gene28998 | 0.851295 | 9.74E-61 | -1.69E-46 |
| MS.gene054214 | MS.gene28998 | 0.808403 | 3.15E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene28998 | 0.848004 | 8.08E-60 | -1.69E-46 |
| MS.gene054473 | MS.gene28998 | 0.834215 | 3.41E-56 | -1.69E-46 |
| MS.gene05455 | MS.gene28998 | 0.887759 | 1.08E-72 | -1.69E-46 |
| MS.gene054802 | MS.gene28998 | 0.85912 | 5.15E-63 | -1.69E-46 |
| MS.gene054803 | MS.gene28998 | 0.860362 | 2.18E-63 | -1.69E-46 |
| MS.gene054804 | MS.gene28998 | 0.857977 | 1.13E-62 | -1.69E-46 |
| MS.gene054942 | MS.gene28998 | 0.81846 | 1.94E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene28998 | 0.805796 | 1.12E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene28998 | 0.906056 | 2.23E-80 | -1.69E-46 |
| MS.gene055303 | MS.gene28998 | 0.848694 | 5.20E-60 | -1.69E-46 |
| MS.gene055390 | MS.gene28998 | 0.903037 | 5.25E-79 | -1.69E-46 |
| MS.gene055412 | MS.gene28998 | 0.815574 | 8.62E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene28998 | 0.902228 | 1.20E-78 | -1.69E-46 |
| MS.gene055428 | MS.gene28998 | 0.910313 | 2.15E-82 | -1.69E-46 |
| MS.gene055604 | MS.gene28998 | 0.851286 | 9.80E-61 | -1.69E-46 |
| MS.gene055712 | MS.gene28998 | 0.833139 | 6.33E-56 | -1.69E-46 |
| MS.gene055930 | MS.gene28998 | 0.815253 | 1.02E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene28998 | 0.852498 | 4.44E-61 | -1.69E-46 |
| MS.gene056407 | MS.gene28998 | 0.841362 | 4.98E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene28998 | 0.827012 | 1.98E-54 | -1.69E-46 |
| MS.gene056452 | MS.gene28998 | 0.817771 | 2.77E-52 | -1.69E-46 |
| MS.gene056612 | MS.gene28998 | 0.861431 | 1.03E-63 | -1.69E-46 |
| MS.gene056796 | MS.gene28998 | 0.813265 | 2.79E-51 | -1.69E-46 |
| MS.gene056902 | MS.gene28998 | 0.816122 | 6.51E-52 | -1.69E-46 |
| MS.gene056931 | MS.gene28998 | 0.850304 | 1.85E-60 | -1.69E-46 |
| MS.gene056933 | MS.gene28998 | 0.845458 | 4.01E-59 | -1.69E-46 |
| MS.gene056935 | MS.gene28998 | 0.843545 | 1.31E-58 | -1.69E-46 |
| MS.gene057011 | MS.gene28998 | 0.829771 | 4.27E-55 | -1.69E-46 |
| MS.gene05702 | MS.gene28998 | 0.854847 | 9.37E-62 | -1.69E-46 |
| MS.gene057121 | MS.gene28998 | 0.871331 | 7.41E-67 | -1.69E-46 |
| MS.gene057123 | MS.gene28998 | 0.809067 | 2.27E-50 | -1.69E-46 |
| MS.gene057245 | MS.gene28998 | 0.86726 | 1.56E-65 | -1.69E-46 |
| MS.gene057260 | MS.gene28998 | 0.803104 | 4.09E-49 | -1.69E-46 |
| MS.gene057295 | MS.gene28998 | 0.826132 | 3.21E-54 | -1.69E-46 |
| MS.gene05733 | MS.gene28998 | 0.842986 | 1.85E-58 | -1.69E-46 |
| MS.gene057439 | MS.gene28998 | 0.863529 | 2.33E-64 | -1.69E-46 |
| MS.gene057448 | MS.gene28998 | 0.80726 | 5.51E-50 | -1.69E-46 |
| MS.gene057450 | MS.gene28998 | 0.81729 | 3.56E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene28998 | 0.825705 | 4.05E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene28998 | 0.888425 | 5.97E-73 | -1.69E-46 |
| MS.gene05811 | MS.gene28998 | 0.889403 | 2.50E-73 | -1.69E-46 |
| MS.gene058142 | MS.gene28998 | 0.824356 | 8.44E-54 | -1.69E-46 |
| MS.gene058233 | MS.gene28998 | 0.825905 | 3.63E-54 | -1.69E-46 |
| MS.gene058276 | MS.gene28998 | 0.819436 | 1.16E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene28998 | 0.863654 | 2.13E-64 | -1.69E-46 |
| MS.gene058365 | MS.gene28998 | 0.802013 | 6.86E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene28998 | 0.892972 | 9.69E-75 | -1.69E-46 |
| MS.gene058787 | MS.gene28998 | 0.8041 | 2.54E-49 | -1.69E-46 |
| MS.gene058845 | MS.gene28998 | 0.819157 | 1.35E-52 | -1.69E-46 |
| MS.gene05886 | MS.gene28998 | 0.817308 | 3.53E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene28998 | 0.802539 | 5.35E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene28998 | 0.883696 | 3.60E-71 | -1.69E-46 |
| MS.gene059228 | MS.gene28998 | 0.830916 | 2.24E-55 | -1.69E-46 |
| MS.gene059326 | MS.gene28998 | 0.843578 | 1.29E-58 | -1.69E-46 |
| MS.gene059518 | MS.gene28998 | 0.88503 | 1.16E-71 | -1.69E-46 |
| MS.gene059536 | MS.gene28998 | 0.805561 | 1.26E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene28998 | 0.881117 | 3.13E-70 | -1.69E-46 |
| MS.gene05959 | MS.gene28998 | 0.820449 | 6.82E-53 | -1.69E-46 |
| MS.gene059676 | MS.gene28998 | 0.864828 | 9.18E-65 | -1.69E-46 |
| MS.gene059688 | MS.gene28998 | 0.834357 | 3.14E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene28998 | 0.842977 | 1.86E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene28998 | 0.847917 | 8.54E-60 | -1.69E-46 |
| MS.gene05984 | MS.gene28998 | 0.86494 | 8.47E-65 | -1.69E-46 |
| MS.gene059894 | MS.gene28998 | 0.865067 | 7.73E-65 | -1.69E-46 |
| MS.gene059960 | MS.gene28998 | 0.825075 | 5.71E-54 | -1.69E-46 |
| MS.gene059974 | MS.gene28998 | 0.832977 | 6.95E-56 | -1.69E-46 |
| MS.gene060005 | MS.gene28998 | 0.849469 | 3.17E-60 | -1.69E-46 |
| MS.gene06037 | MS.gene28998 | 0.859528 | 3.89E-63 | -1.69E-46 |
| MS.gene060407 | MS.gene28998 | 0.822482 | 2.31E-53 | -1.69E-46 |
| MS.gene060476 | MS.gene28998 | 0.826784 | 2.24E-54 | -1.69E-46 |
| MS.gene060559 | MS.gene28998 | 0.86772 | 1.11E-65 | -1.69E-46 |
| MS.gene06090 | MS.gene28998 | 0.813905 | 2.02E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene28998 | 0.878233 | 3.31E-69 | -1.69E-46 |
| MS.gene061051 | MS.gene28998 | -0.82185 | 3.24E-53 | -1.69E-46 |
| MS.gene061200 | MS.gene28998 | 0.80976 | 1.61E-50 | -1.69E-46 |
| MS.gene061265 | MS.gene28998 | 0.800802 | 1.21E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28998.t1 | MTR_3g075540 | 88.095 | 294 | 20 | 4 | 1 | 283 | 1 | 290 | 0.0 | 511 |
| MS.gene28998.t1 | MTR_4g015860 | 35.333 | 150 | 90 | 4 | 79 | 226 | 52 | 196 | 9.88e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28998.t1 | AT4G24750 | 59.596 | 297 | 101 | 6 | 1 | 283 | 1 | 292 | 5.39e-123 | 353 |
| MS.gene28998.t1 | AT3G08920 | 37.342 | 158 | 81 | 5 | 84 | 228 | 44 | 196 | 3.05e-20 | 87.0 |
| MS.gene28998.t1 | AT2G42220 | 29.670 | 182 | 100 | 5 | 45 | 225 | 31 | 185 | 1.70e-14 | 71.6 |
Find 74 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGCTTCCCATCTCTTTC+TGG | 0.133810 | 3.1:-62748412 | None:intergenic |
| AACAATTAGTTCTGCATCTT+TGG | 0.158493 | 3.1:-62749925 | None:intergenic |
| GTTGCCGATGCATTATTTAT+TGG | 0.202866 | 3.1:+62751642 | MS.gene28998:CDS |
| TTTATTGGCGCTCAGCAAAT+TGG | 0.243390 | 3.1:+62751657 | MS.gene28998:CDS |
| CCGGTTACACAAACCTGTTT+TGG | 0.266059 | 3.1:+62750245 | MS.gene28998:CDS |
| ACAATTAGTTCTGCATCTTT+GGG | 0.290043 | 3.1:-62749924 | None:intergenic |
| TGCTGCAGCCAAGGAAGGTT+GGG | 0.307164 | 3.1:+62751494 | MS.gene28998:CDS |
| CCAAAACAGGTTTGTGTAAC+CGG | 0.332922 | 3.1:-62750245 | None:intergenic |
| GCCTCTTAAGTTGCTGGAAT+TGG | 0.333048 | 3.1:+62750440 | MS.gene28998:intron |
| GAGCTCACCTCAGTCCCTTC+TGG | 0.353437 | 3.1:-62749953 | None:intergenic |
| CCATCATCGACATTGAATAT+TGG | 0.361064 | 3.1:-62749617 | None:intergenic |
| GGGAACTTCTCCGCAACTTT+GGG | 0.366253 | 3.1:-62749903 | None:intergenic |
| GCAAATTGGGCGCTATCTTC+AGG | 0.376324 | 3.1:+62751671 | MS.gene28998:CDS |
| CTAGATGTTGGAACCATTCC+AGG | 0.378625 | 3.1:+62749641 | MS.gene28998:CDS |
| TTCAACTAGACAGAAGTCTA+TGG | 0.385292 | 3.1:+62748237 | MS.gene28998:CDS |
| TGCTGGAATTGGTGGTGTTT+CGG | 0.389710 | 3.1:+62750451 | MS.gene28998:CDS |
| GGTGGTGTTTCGGAATTCCT+TGG | 0.414207 | 3.1:+62750461 | MS.gene28998:CDS |
| AACCTTGTTGTGTTCATTTG+AGG | 0.419393 | 3.1:-62749201 | None:intergenic |
| TTATTGGCGCTCAGCAAATT+GGG | 0.419491 | 3.1:+62751658 | MS.gene28998:CDS |
| TCTGTATCCCCAACCTTCCT+TGG | 0.420887 | 3.1:-62751502 | None:intergenic |
| GGGGAACTTCTCCGCAACTT+TGG | 0.424721 | 3.1:-62749904 | None:intergenic |
| AGCCTCCTTGAACCCAAAAC+AGG | 0.429532 | 3.1:-62750258 | None:intergenic |
| CTGCTGCAGCCAAGGAAGGT+TGG | 0.434380 | 3.1:+62751493 | MS.gene28998:CDS |
| CTGCATATCCAGCTTCCCTT+GGG | 0.434527 | 3.1:-62749142 | None:intergenic |
| GGCGCTATCTTCAGGAGATT+AGG | 0.442319 | 3.1:+62751679 | MS.gene28998:CDS |
| AGAAGAAGGACGGTGTTGTA+AGG | 0.442401 | 3.1:-62748215 | None:intergenic |
| GTAGGTGTTGGTGTTGGAAT+TGG | 0.442509 | 3.1:-62748152 | None:intergenic |
| ACTGCATATCCAGCTTCCCT+TGG | 0.444447 | 3.1:-62749143 | None:intergenic |
| ATTGAAGCAAGTCAGGGATA+TGG | 0.444913 | 3.1:+62748383 | MS.gene28998:CDS |
| ACCTTGTTGTGTTCATTTGA+GGG | 0.445197 | 3.1:-62749200 | None:intergenic |
| ACAAGCCCCTTCTTGATGTT+CGG | 0.445700 | 3.1:+62749177 | MS.gene28998:CDS |
| GACATTGAATATTGGAATCC+AGG | 0.449682 | 3.1:-62749609 | None:intergenic |
| GTTCTTACCCCAAGGGAAGC+TGG | 0.464181 | 3.1:+62749134 | MS.gene28998:CDS |
| GTGGTGTTTCGGAATTCCTT+GGG | 0.488639 | 3.1:+62750462 | MS.gene28998:CDS |
| CAGAAAGAGATGGGAAGCTC+TGG | 0.490533 | 3.1:+62748413 | MS.gene28998:CDS |
| CCAATATTCAATGTCGATGA+TGG | 0.493249 | 3.1:+62749617 | MS.gene28998:CDS |
| TGTAACCATAGTATCTCAAT+GGG | 0.513701 | 3.1:-62751703 | None:intergenic |
| ACAAAGAGCTGCTGCAGCCA+AGG | 0.514373 | 3.1:+62751485 | MS.gene28998:CDS |
| TCTTAAGTTGCTGGAATTGG+TGG | 0.519328 | 3.1:+62750443 | MS.gene28998:intron |
| GGAATTGGTAACAGTGATTG+TGG | 0.521328 | 3.1:-62748137 | None:intergenic |
| GGCTGCTGCCAGAAAGAGAT+GGG | 0.527321 | 3.1:+62748404 | MS.gene28998:CDS |
| GAATTGGTAACAGTGATTGT+GGG | 0.531813 | 3.1:-62748136 | None:intergenic |
| CTTTGATGCTGCTGAAGAAG+AGG | 0.535812 | 3.1:+62750279 | MS.gene28998:CDS |
| GGTAACAGTGATTGTGGGAA+GGG | 0.538152 | 3.1:-62748131 | None:intergenic |
| TGTTATGAACAGGAGGTTGG+TGG | 0.549582 | 3.1:+62749753 | MS.gene28998:intron |
| GTCGATGATGGTCTAGATGT+TGG | 0.552986 | 3.1:+62749629 | MS.gene28998:CDS |
| CTAATTGTTGCATGCCAGAA+GGG | 0.553912 | 3.1:+62749939 | MS.gene28998:CDS |
| TGGTAACAGTGATTGTGGGA+AGG | 0.563931 | 3.1:-62748132 | None:intergenic |
| TTGAGGGCCGAACATCAAGA+AGG | 0.565178 | 3.1:-62749184 | None:intergenic |
| CATGGGTGAAAGGTTCAACC+TGG | 0.567974 | 3.1:+62749591 | MS.gene28998:CDS |
| TTCTGTCTAGTTGAAGAAGA+AGG | 0.568939 | 3.1:-62748229 | None:intergenic |
| AGAGCTGCTGCAGCCAAGGA+AGG | 0.571203 | 3.1:+62751489 | MS.gene28998:CDS |
| CAATTAGTTCTGCATCTTTG+GGG | 0.572471 | 3.1:-62749923 | None:intergenic |
| AGCGCCAATAAATAATGCAT+CGG | 0.573957 | 3.1:-62751646 | None:intergenic |
| TGAACAGGAGGTTGGTGGAG+TGG | 0.574736 | 3.1:+62749758 | MS.gene28998:intron |
| AGAAATGTAGGTGTTGGTGT+TGG | 0.575274 | 3.1:-62748158 | None:intergenic |
| ACTTAGAGAAATGTAGGTGT+TGG | 0.580172 | 3.1:-62748164 | None:intergenic |
| AAATTAAGGTTCTTACCCCA+AGG | 0.581254 | 3.1:+62749126 | MS.gene28998:CDS |
| TGAGGGCCGAACATCAAGAA+GGG | 0.582614 | 3.1:-62749183 | None:intergenic |
| ACTAATTGTTGCATGCCAGA+AGG | 0.587081 | 3.1:+62749938 | MS.gene28998:CDS |
| AGCGGCACTTAGAGAAATGT+AGG | 0.593525 | 3.1:-62748170 | None:intergenic |
| GCTGCAGCCAAGGAAGGTTG+GGG | 0.594915 | 3.1:+62751495 | MS.gene28998:CDS |
| AATTAAGGTTCTTACCCCAA+GGG | 0.596376 | 3.1:+62749127 | MS.gene28998:CDS |
| TGGCTGCTGCCAGAAAGAGA+TGG | 0.598638 | 3.1:+62748403 | MS.gene28998:CDS |
| TGTGAACTACTATATAATGC+CGG | 0.608880 | 3.1:+62750226 | MS.gene28998:CDS |
| CTCGTTCTTACCCAAAGTTG+CGG | 0.625365 | 3.1:+62749893 | MS.gene28998:CDS |
| GAGGGCCGAACATCAAGAAG+GGG | 0.626090 | 3.1:-62749182 | None:intergenic |
| GTCTAGTTGAAGAAGAAGGA+CGG | 0.638770 | 3.1:-62748225 | None:intergenic |
| GCCCTCAAATGAACACAACA+AGG | 0.642119 | 3.1:+62749199 | MS.gene28998:CDS |
| GAGTGAGGCATAATTAGTAG+CGG | 0.656820 | 3.1:-62748188 | None:intergenic |
| TGCATATCCAGCTTCCCTTG+GGG | 0.664362 | 3.1:-62749141 | None:intergenic |
| GTGTTGTAAGGAAGAGAGTG+AGG | 0.671205 | 3.1:-62748203 | None:intergenic |
| TTGCATGCCAGAAGGGACTG+AGG | 0.715447 | 3.1:+62749946 | MS.gene28998:CDS |
| TACTTGTCAAAAGACAGTGT+AGG | 0.751162 | 3.1:-62749785 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAATCACCA+TGG | - | chr3.1:62750819-62750838 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAATCACCAT+GGG | - | chr3.1:62750818-62750837 | None:intergenic | 15.0% |
| !! | ATGTTAATAACTATCAATTT+GGG | + | chr3.1:62750933-62750952 | MS.gene28998:intron | 15.0% |
| !! | TTAATAGAATCAAATGTATA+AGG | - | chr3.1:62749443-62749462 | None:intergenic | 15.0% |
| !!! | AAAATTACTTTATTGTTGTT+TGG | + | chr3.1:62750743-62750762 | MS.gene28998:intron | 15.0% |
| !!! | AAATTACTTTATTGTTGTTT+GGG | + | chr3.1:62750744-62750763 | MS.gene28998:intron | 15.0% |
| !!! | CATTTCATTTTTTAAATCTT+TGG | + | chr3.1:62750087-62750106 | MS.gene28998:intron | 15.0% |
| !!! | TTTTAAACATCTTATTGTTA+TGG | + | chr3.1:62749335-62749354 | MS.gene28998:intron | 15.0% |
| !! | AAACAATTTCAATGACAAAA+GGG | + | chr3.1:62750904-62750923 | MS.gene28998:intron | 20.0% |
| !! | ATATTGTAGCATTAGAAATT+AGG | - | chr3.1:62750519-62750538 | None:intergenic | 20.0% |
| !! | GAAAATAAAAATAACTTCTC+TGG | + | chr3.1:62750361-62750380 | MS.gene28998:intron | 20.0% |
| !! | GATGTTAATAACTATCAATT+TGG | + | chr3.1:62750932-62750951 | MS.gene28998:intron | 20.0% |
| !! | TAAACAATTTCAATGACAAA+AGG | + | chr3.1:62750903-62750922 | MS.gene28998:intron | 20.0% |
| !! | TAGACAAATATTAGAATTAG+TGG | + | chr3.1:62748864-62748883 | MS.gene28998:intron | 20.0% |
| !! | TATAAATGTAATGAAAGAGT+CGG | - | chr3.1:62749706-62749725 | None:intergenic | 20.0% |
| !! | TATCATGATGAATTCTAATT+TGG | + | chr3.1:62750536-62750555 | MS.gene28998:intron | 20.0% |
| !!! | AAAATCACAAATTTTGCTAT+GGG | + | chr3.1:62749664-62749683 | MS.gene28998:CDS | 20.0% |
| !!! | AATCTAATAGTGTTTGTTAT+TGG | + | chr3.1:62748992-62749011 | MS.gene28998:intron | 20.0% |
| !!! | AATTACTTTATTGTTGTTTG+GGG | + | chr3.1:62750745-62750764 | MS.gene28998:intron | 20.0% |
| !!! | ATCTTTATTTTTTCATATGC+TGG | + | chr3.1:62750863-62750882 | MS.gene28998:intron | 20.0% |
| !!! | CAATTACCAAATACATTTTA+AGG | - | chr3.1:62750037-62750056 | None:intergenic | 20.0% |
| !!! | CTTAAAATGTATTTGGTAAT+TGG | + | chr3.1:62750035-62750054 | MS.gene28998:intron | 20.0% |
| !!! | TCAGAACAATTTTAAAAGTT+TGG | + | chr3.1:62751421-62751440 | MS.gene28998:intron | 20.0% |
| !!! | TTACTAATCAATTTTGAGAT+CGG | + | chr3.1:62751043-62751062 | MS.gene28998:intron | 20.0% |
| ! | AGAAAATGAAATGCTAGTTA+TGG | + | chr3.1:62748623-62748642 | MS.gene28998:intron | 25.0% |
| ! | AGAAATTCAGAAAACTGAAA+TGG | - | chr3.1:62750314-62750333 | None:intergenic | 25.0% |
| ! | ATACTTCTCACAAGTTTAAT+TGG | + | chr3.1:62750691-62750710 | MS.gene28998:intron | 25.0% |
| ! | ATTCAATTCAACCAAAAACT+AGG | - | chr3.1:62748752-62748771 | None:intergenic | 25.0% |
| ! | CATACAATAGATTAATTACC+AGG | - | chr3.1:62751545-62751564 | None:intergenic | 25.0% |
| ! | CCATTTCCTTAAAATGTATT+TGG | + | chr3.1:62750028-62750047 | MS.gene28998:intron | 25.0% |
| ! | GAAATTCAGAAAACTGAAAT+GGG | - | chr3.1:62750313-62750332 | None:intergenic | 25.0% |
| ! | GCTGTACTCTAATTAAATTT+AGG | + | chr3.1:62750339-62750358 | MS.gene28998:intron | 25.0% |
| ! | TAAGGTTTACATTGTCTATT+TGG | - | chr3.1:62750165-62750184 | None:intergenic | 25.0% |
| ! | TATATCACCAACAAATATCT+AGG | - | chr3.1:62748783-62748802 | None:intergenic | 25.0% |
| ! | TTAAGTTTGTGCAATTACAA+TGG | - | chr3.1:62751329-62751348 | None:intergenic | 25.0% |
| ! | TTCTTATCCTAGATATTTGT+TGG | + | chr3.1:62748773-62748792 | MS.gene28998:intron | 25.0% |
| ! | TTGGTTCAATCAAATTATTG+TGG | + | chr3.1:62750106-62750125 | MS.gene28998:intron | 25.0% |
| ! | TTTGACATCACAAATTTGAA+TGG | + | chr3.1:62751593-62751612 | MS.gene28998:intron | 25.0% |
| !! | ACTTGTTAAATGATTAGAGA+TGG | - | chr3.1:62750137-62750156 | None:intergenic | 25.0% |
| !! | GAAAATCACAAATTTTGCTA+TGG | + | chr3.1:62749663-62749682 | MS.gene28998:CDS | 25.0% |
| !!! | ATTTATTTTTCCTAGATCGA+CGG | + | chr3.1:62750961-62750980 | MS.gene28998:intron | 25.0% |
| !!! | CCAAATACATTTTAAGGAAA+TGG | - | chr3.1:62750031-62750050 | None:intergenic | 25.0% |
| !!! | GTTGGTGATATAGATTATTT+GGG | + | chr3.1:62748791-62748810 | MS.gene28998:intron | 25.0% |
| !!! | TGTTGGTGATATAGATTATT+TGG | + | chr3.1:62748790-62748809 | MS.gene28998:intron | 25.0% |
| !!! | TTGGATGACTGTATTTTAAT+GGG | + | chr3.1:62749067-62749086 | MS.gene28998:intron | 25.0% |
| !!! | TTTGGATGACTGTATTTTAA+TGG | + | chr3.1:62749066-62749085 | MS.gene28998:intron | 25.0% |
| AAATGTGACTCAAAACACAA+GGG | - | chr3.1:62750072-62750091 | None:intergenic | 30.0% | |
| AAATTAGGAAGTAAGGTTAG+AGG | - | chr3.1:62750504-62750523 | None:intergenic | 30.0% | |
| AACATCTTATTGTTATGGTC+AGG | + | chr3.1:62749340-62749359 | MS.gene28998:intron | 30.0% | |
| AACTGCAATTCTTATGTCAT+TGG | + | chr3.1:62751101-62751120 | MS.gene28998:intron | 30.0% | |
| AAGATCACAACAATAATGTG+TGG | - | chr3.1:62749543-62749562 | None:intergenic | 30.0% | |
| ACTGCAATATTATTTCCAGT+TGG | + | chr3.1:62751454-62751473 | MS.gene28998:intron | 30.0% | |
| ACTGCAATTCTTATGTCATT+GGG | + | chr3.1:62751102-62751121 | MS.gene28998:intron | 30.0% | |
| GATCGTTTATCATGAATTCA+TGG | - | chr3.1:62751166-62751185 | None:intergenic | 30.0% | |
| GCATTAGAAATTAGGAAGTA+AGG | - | chr3.1:62750511-62750530 | None:intergenic | 30.0% | |
| GTTCAGGGATGAAAAAATTA+AGG | + | chr3.1:62749112-62749131 | MS.gene28998:intron | 30.0% | |
| TATGTGCAAGTGCAATATAT+TGG | - | chr3.1:62749264-62749283 | None:intergenic | 30.0% | |
| TGTGAACTACTATATAATGC+CGG | + | chr3.1:62750226-62750245 | MS.gene28998:CDS | 30.0% | |
| TTAGTTTAAGAGTTCTCTGA+TGG | + | chr3.1:62750563-62750582 | MS.gene28998:intron | 30.0% | |
| TTCTCACAAGTTTAATTGGT+TGG | + | chr3.1:62750695-62750714 | MS.gene28998:intron | 30.0% | |
| TTTAGTTAGTTACCTCTAGT+AGG | + | chr3.1:62749287-62749306 | MS.gene28998:intron | 30.0% | |
| ! | AATCTGGAATACATAACACA+TGG | - | chr3.1:62751142-62751161 | None:intergenic | 30.0% |
| ! | AATTTGTGATTTTCCTGGAA+TGG | - | chr3.1:62749657-62749676 | None:intergenic | 30.0% |
| ! | AGAAGTATAATGTTCTAGTG+TGG | - | chr3.1:62750679-62750698 | None:intergenic | 30.0% |
| ! | AGCAAAATTTGTGATTTTCC+TGG | - | chr3.1:62749662-62749681 | None:intergenic | 30.0% |
| ! | ATGTGTTTTCACAGAGTAAA+TGG | + | chr3.1:62748724-62748743 | MS.gene28998:intron | 30.0% |
| ! | ATTTTGAATTGAAGCAAGTC+AGG | + | chr3.1:62748376-62748395 | MS.gene28998:CDS | 30.0% |
| ! | GATTATTTGGGATTTCTCAA+AGG | + | chr3.1:62748803-62748822 | MS.gene28998:intron | 30.0% |
| ! | TAGCATGTAGTTTCATCTTT+TGG | - | chr3.1:62751021-62751040 | None:intergenic | 30.0% |
| ! | TTTTGAATTGAAGCAAGTCA+GGG | + | chr3.1:62748377-62748396 | MS.gene28998:CDS | 30.0% |
| !! | AACAATTAGTTCTGCATCTT+TGG | - | chr3.1:62749928-62749947 | None:intergenic | 30.0% |
| !! | ACAATTAGTTCTGCATCTTT+GGG | - | chr3.1:62749927-62749946 | None:intergenic | 30.0% |
| !! | TTTGACTTGATGTTATGAAC+AGG | + | chr3.1:62749743-62749762 | MS.gene28998:intron | 30.0% |
| !!! | TGGATGACTGTATTTTAATG+GGG | + | chr3.1:62749068-62749087 | MS.gene28998:intron | 30.0% |
| !!! | TTGAAGGAGTTTTAAGCAAT+AGG | - | chr3.1:62748919-62748938 | None:intergenic | 30.0% |
| AAATTAAGGTTCTTACCCCA+AGG | + | chr3.1:62749126-62749145 | MS.gene28998:CDS | 35.0% | |
| AATGTGACTCAAAACACAAG+GGG | - | chr3.1:62750071-62750090 | None:intergenic | 35.0% | |
| AATTAAGGTTCTTACCCCAA+GGG | + | chr3.1:62749127-62749146 | MS.gene28998:CDS | 35.0% | |
| ACAACATTCTTCTTCTGCAA+AGG | - | chr3.1:62748333-62748352 | None:intergenic | 35.0% | |
| ACTTAGAGAAATGTAGGTGT+TGG | - | chr3.1:62748167-62748186 | None:intergenic | 35.0% | |
| AGCGCCAATAAATAATGCAT+CGG | - | chr3.1:62751649-62751668 | None:intergenic | 35.0% | |
| ATCAGGTTCAGAACAACATA+AGG | - | chr3.1:62750183-62750202 | None:intergenic | 35.0% | |
| ATCATGAATTCATGGCAATC+TGG | - | chr3.1:62751158-62751177 | None:intergenic | 35.0% | |
| ATTCGATCCAGAAACTAACA+TGG | - | chr3.1:62748890-62748909 | None:intergenic | 35.0% | |
| CAATTTCAATGACAAAAGGG+AGG | + | chr3.1:62750907-62750926 | MS.gene28998:intron | 35.0% | |
| CCAATATTCAATGTCGATGA+TGG | + | chr3.1:62749617-62749636 | MS.gene28998:CDS | 35.0% | |
| CCATCATCGACATTGAATAT+TGG | - | chr3.1:62749620-62749639 | None:intergenic | 35.0% | |
| GAAATGTGACTCAAAACACA+AGG | - | chr3.1:62750073-62750092 | None:intergenic | 35.0% | |
| GAAGAATGTTCATAGATCGT+TGG | + | chr3.1:62751303-62751322 | MS.gene28998:intron | 35.0% | |
| GACATTGAATATTGGAATCC+AGG | - | chr3.1:62749612-62749631 | None:intergenic | 35.0% | |
| GTGAGCTCTATACATTCAAT+AGG | + | chr3.1:62749968-62749987 | MS.gene28998:intron | 35.0% | |
| GTTGCCGATGCATTATTTAT+TGG | + | chr3.1:62751642-62751661 | MS.gene28998:CDS | 35.0% | |
| TACTTGTCAAAAGACAGTGT+AGG | - | chr3.1:62749788-62749807 | None:intergenic | 35.0% | |
| TGAATGGTTATTGCGTAGAT+TGG | + | chr3.1:62751609-62751628 | MS.gene28998:intron | 35.0% | |
| TTCAACTAGACAGAAGTCTA+TGG | + | chr3.1:62748237-62748256 | MS.gene28998:CDS | 35.0% | |
| TTCTGTCTAGTTGAAGAAGA+AGG | - | chr3.1:62748232-62748251 | None:intergenic | 35.0% | |
| ! | AACCTTGTTGTGTTCATTTG+AGG | - | chr3.1:62749204-62749223 | None:intergenic | 35.0% |
| ! | ACCTTGTTGTGTTCATTTGA+GGG | - | chr3.1:62749203-62749222 | None:intergenic | 35.0% |
| ! | ATGTAGTTTCATCTTTTGGC+AGG | - | chr3.1:62751017-62751036 | None:intergenic | 35.0% |
| ! | GAATTGGTAACAGTGATTGT+GGG | - | chr3.1:62748139-62748158 | None:intergenic | 35.0% |
| ! | GGGATACAGATTAGTGTTTT+CGG | + | chr3.1:62751515-62751534 | MS.gene28998:CDS | 35.0% |
| ! | TCATTTTCTCTCGACCATAA+TGG | - | chr3.1:62748612-62748631 | None:intergenic | 35.0% |
| ! | TCTTTTTGCTTACGATATGC+AGG | + | chr3.1:62751367-62751386 | MS.gene28998:intron | 35.0% |
| ! | TTAATCCTTTTGGTCTGTTG+TGG | + | chr3.1:62750389-62750408 | MS.gene28998:intron | 35.0% |
| ! | TTAGTTTCTGGATCGAATCT+GGG | + | chr3.1:62748892-62748911 | MS.gene28998:intron | 35.0% |
| !! | AGTAAATGGAGCCTAGTTTT+TGG | + | chr3.1:62748738-62748757 | MS.gene28998:intron | 35.0% |
| !! | CAATTAGTTCTGCATCTTTG+GGG | - | chr3.1:62749926-62749945 | None:intergenic | 35.0% |
| !! | GCTCTTTTTGCATGTTTTGA+AGG | + | chr3.1:62749568-62749587 | MS.gene28998:intron | 35.0% |
| !!! | GGATGACTGTATTTTAATGG+GGG | + | chr3.1:62749069-62749088 | MS.gene28998:intron | 35.0% |
| !!! | TTTGCATGTTTTGAAGGCAT+GGG | + | chr3.1:62749574-62749593 | MS.gene28998:intron | 35.0% |
| !!! | TTTTGCATGTTTTGAAGGCA+TGG | + | chr3.1:62749573-62749592 | MS.gene28998:intron | 35.0% |
| ACCAATTCCAGCAACTTAAG+AGG | - | chr3.1:62750444-62750463 | None:intergenic | 40.0% | |
| ACTAATTGTTGCATGCCAGA+AGG | + | chr3.1:62749938-62749957 | MS.gene28998:CDS | 40.0% | |
| ACTAGACAGAAGTCTATGGT+TGG | + | chr3.1:62748241-62748260 | MS.gene28998:intron | 40.0% | |
| ACTCTTGAAGCGAACCATTA+TGG | + | chr3.1:62748595-62748614 | MS.gene28998:intron | 40.0% | |
| AGTTAGTTACCTCTAGTAGG+AGG | + | chr3.1:62749290-62749309 | MS.gene28998:intron | 40.0% | |
| ATTGAAGCAAGTCAGGGATA+TGG | + | chr3.1:62748383-62748402 | MS.gene28998:CDS | 40.0% | |
| CAAGTGCAATATATTGGCCA+AGG | - | chr3.1:62749258-62749277 | None:intergenic | 40.0% | |
| CCAAAACAGGTTTGTGTAAC+CGG | - | chr3.1:62750248-62750267 | None:intergenic | 40.0% | |
| CGTGTTTGCTTTGTAGTTCA+GGG | + | chr3.1:62749097-62749116 | MS.gene28998:intron | 40.0% | |
| CTAATTGTTGCATGCCAGAA+GGG | + | chr3.1:62749939-62749958 | MS.gene28998:CDS | 40.0% | |
| CTGTCATGAGTGATTGATCT+TGG | + | chr3.1:62749378-62749397 | MS.gene28998:intron | 40.0% | |
| GACTTGATGTTATGAACAGG+AGG | + | chr3.1:62749746-62749765 | MS.gene28998:intron | 40.0% | |
| GAGTGAGGCATAATTAGTAG+CGG | - | chr3.1:62748191-62748210 | None:intergenic | 40.0% | |
| GCTTTCAACAGTTACTACCA+AGG | - | chr3.1:62749405-62749424 | None:intergenic | 40.0% | |
| GGTAAGGTAAGAGACATTGA+AGG | - | chr3.1:62748935-62748954 | None:intergenic | 40.0% | |
| GTCTAGTTGAAGAAGAAGGA+CGG | - | chr3.1:62748228-62748247 | None:intergenic | 40.0% | |
| TAATGATCTGGCCAACAATC+AGG | - | chr3.1:62750200-62750219 | None:intergenic | 40.0% | |
| TAATGTTCTAGTGTGGCAAC+TGG | - | chr3.1:62750672-62750691 | None:intergenic | 40.0% | |
| TCTTTGTTGATCAGTCCAAC+TGG | - | chr3.1:62751472-62751491 | None:intergenic | 40.0% | |
| TGAGATTAGATAGCTACCCA+AGG | - | chr3.1:62750481-62750500 | None:intergenic | 40.0% | |
| TGATGTTATGAACAGGAGGT+TGG | + | chr3.1:62749750-62749769 | MS.gene28998:intron | 40.0% | |
| TGGGATTTCTCAAAGGCTTT+GGG | + | chr3.1:62748810-62748829 | MS.gene28998:intron | 40.0% | |
| TTATTGGCGCTCAGCAAATT+GGG | + | chr3.1:62751658-62751677 | MS.gene28998:CDS | 40.0% | |
| TTCACAAGCAGCTAATGATC+TGG | - | chr3.1:62750212-62750231 | None:intergenic | 40.0% | |
| TTGGGATTTCTCAAAGGCTT+TGG | + | chr3.1:62748809-62748828 | MS.gene28998:intron | 40.0% | |
| TTTATTGGCGCTCAGCAAAT+TGG | + | chr3.1:62751657-62751676 | MS.gene28998:CDS | 40.0% | |
| ! | CGGTTACACAAACCTGTTTT+GGG | + | chr3.1:62750246-62750265 | MS.gene28998:CDS | 40.0% |
| ! | GGAATTGGTAACAGTGATTG+TGG | - | chr3.1:62748140-62748159 | None:intergenic | 40.0% |
| ! | GTTAGTTTCTGGATCGAATC+TGG | + | chr3.1:62748891-62748910 | MS.gene28998:intron | 40.0% |
| ! | GTTGTTCTGAACCTGATTGT+TGG | + | chr3.1:62750186-62750205 | MS.gene28998:intron | 40.0% |
| ! | TCTGGTGAGCTTAATCCTTT+TGG | + | chr3.1:62750379-62750398 | MS.gene28998:intron | 40.0% |
| ! | TCTTAAGTTGCTGGAATTGG+TGG | + | chr3.1:62750443-62750462 | MS.gene28998:intron | 40.0% |
| ! | TTAGTGGCCATGTTAGTTTC+TGG | + | chr3.1:62748880-62748899 | MS.gene28998:intron | 40.0% |
| !! | AGAAATGTAGGTGTTGGTGT+TGG | - | chr3.1:62748161-62748180 | None:intergenic | 40.0% |
| !! | CTTTATTGTTGTTTGGGGCA+TGG | + | chr3.1:62750750-62750769 | MS.gene28998:intron | 40.0% |
| !! | GCTCTTGCTTTTGTTTACCT+TGG | + | chr3.1:62749238-62749257 | MS.gene28998:intron | 40.0% |
| !!! | ACAAACCTGTTTTGGGTTCA+AGG | + | chr3.1:62750253-62750272 | MS.gene28998:CDS | 40.0% |
| AAAAGCAAGAGCTGCGTCAT+AGG | - | chr3.1:62749230-62749249 | None:intergenic | 45.0% | |
| AATAGACTGTCCGTCGATCT+AGG | - | chr3.1:62750974-62750993 | None:intergenic | 45.0% | |
| ACAAGCCCCTTCTTGATGTT+CGG | + | chr3.1:62749177-62749196 | MS.gene28998:CDS | 45.0% | |
| AGCGGCACTTAGAGAAATGT+AGG | - | chr3.1:62748173-62748192 | None:intergenic | 45.0% | |
| AGTTTACTAAAGAGCCGCGT+AGG | - | chr3.1:62748968-62748987 | None:intergenic | 45.0% | |
| CTAGATGTTGGAACCATTCC+AGG | + | chr3.1:62749641-62749660 | MS.gene28998:CDS | 45.0% | |
| CTCGTTCTTACCCAAAGTTG+CGG | + | chr3.1:62749893-62749912 | MS.gene28998:CDS | 45.0% | |
| CTTTGATGCTGCTGAAGAAG+AGG | + | chr3.1:62750279-62750298 | MS.gene28998:CDS | 45.0% | |
| GAGTGATTGATCTTGGACCT+TGG | + | chr3.1:62749385-62749404 | MS.gene28998:intron | 45.0% | |
| GCCCTCAAATGAACACAACA+AGG | + | chr3.1:62749199-62749218 | MS.gene28998:CDS | 45.0% | |
| GCGTGTTTGCTTTGTAGTTC+AGG | + | chr3.1:62749096-62749115 | MS.gene28998:intron | 45.0% | |
| GGTAACAGTGATTGTGGGAA+GGG | - | chr3.1:62748134-62748153 | None:intergenic | 45.0% | |
| GTGGTGTTTCGGAATTCCTT+GGG | + | chr3.1:62750462-62750481 | MS.gene28998:CDS | 45.0% | |
| GTGTTGTAAGGAAGAGAGTG+AGG | - | chr3.1:62748206-62748225 | None:intergenic | 45.0% | |
| TAGATCGACGGACAGTCTAT+TGG | + | chr3.1:62750973-62750992 | MS.gene28998:intron | 45.0% | |
| TAGTAGGAGGTGACAAGGAA+AGG | + | chr3.1:62749303-62749322 | MS.gene28998:intron | 45.0% | |
| TGATGCATGTTGAAGACCCA+TGG | + | chr3.1:62750799-62750818 | MS.gene28998:intron | 45.0% | |
| TGGTAACAGTGATTGTGGGA+AGG | - | chr3.1:62748135-62748154 | None:intergenic | 45.0% | |
| TGTTATGAACAGGAGGTTGG+TGG | + | chr3.1:62749753-62749772 | MS.gene28998:intron | 45.0% | |
| ! | CCGGTTACACAAACCTGTTT+TGG | + | chr3.1:62750245-62750264 | MS.gene28998:CDS | 45.0% |
| ! | CTGCGATCTTCTTTTGCGTT+TGG | + | chr3.1:62749048-62749067 | MS.gene28998:intron | 45.0% |
| ! | GCCTCTTAAGTTGCTGGAAT+TGG | + | chr3.1:62750440-62750459 | MS.gene28998:intron | 45.0% |
| ! | GTCGATGATGGTCTAGATGT+TGG | + | chr3.1:62749629-62749648 | MS.gene28998:CDS | 45.0% |
| !! | AGAAGAAGGACGGTGTTGTA+AGG | - | chr3.1:62748218-62748237 | None:intergenic | 45.0% |
| !! | GTAGGTGTTGGTGTTGGAAT+TGG | - | chr3.1:62748155-62748174 | None:intergenic | 45.0% |
| !! | TGCTGGAATTGGTGGTGTTT+CGG | + | chr3.1:62750451-62750470 | MS.gene28998:CDS | 45.0% |
| !!! | AACCTGTTTTGGGTTCAAGG+AGG | + | chr3.1:62750256-62750275 | MS.gene28998:CDS | 45.0% |
| !!! | GTTTTGAAGGCATGGGTGAA+AGG | + | chr3.1:62749581-62749600 | MS.gene28998:intron | 45.0% |
| ACCTCTAGTAGGAGGTGACA+AGG | + | chr3.1:62749298-62749317 | MS.gene28998:intron | 50.0% | |
| ACTGCATATCCAGCTTCCCT+TGG | - | chr3.1:62749146-62749165 | None:intergenic | 50.0% | |
| AGCCTCCTTGAACCCAAAAC+AGG | - | chr3.1:62750261-62750280 | None:intergenic | 50.0% | |
| CAGAAAGAGATGGGAAGCTC+TGG | + | chr3.1:62748413-62748432 | MS.gene28998:CDS | 50.0% | |
| CAGAGCTTCCCATCTCTTTC+TGG | - | chr3.1:62748415-62748434 | None:intergenic | 50.0% | |
| CATGGGTGAAAGGTTCAACC+TGG | + | chr3.1:62749591-62749610 | MS.gene28998:CDS | 50.0% | |
| CTGCATATCCAGCTTCCCTT+GGG | - | chr3.1:62749145-62749164 | None:intergenic | 50.0% | |
| CTGCTCCACAACAGACCAAA+AGG | - | chr3.1:62750397-62750416 | None:intergenic | 50.0% | |
| GCAAATTGGGCGCTATCTTC+AGG | + | chr3.1:62751671-62751690 | MS.gene28998:CDS | 50.0% | |
| GGCGCTATCTTCAGGAGATT+AGG | + | chr3.1:62751679-62751698 | MS.gene28998:CDS | 50.0% | |
| GGGAACTTCTCCGCAACTTT+GGG | - | chr3.1:62749906-62749925 | None:intergenic | 50.0% | |
| GGTGGTGTTTCGGAATTCCT+TGG | + | chr3.1:62750461-62750480 | MS.gene28998:CDS | 50.0% | |
| TCCTTGTCACCTCCTACTAG+AGG | - | chr3.1:62749302-62749321 | None:intergenic | 50.0% | |
| TCTGTATCCCCAACCTTCCT+TGG | - | chr3.1:62751505-62751524 | None:intergenic | 50.0% | |
| TGAGGGCCGAACATCAAGAA+GGG | - | chr3.1:62749186-62749205 | None:intergenic | 50.0% | |
| TGCATATCCAGCTTCCCTTG+GGG | - | chr3.1:62749144-62749163 | None:intergenic | 50.0% | |
| TGGGGCATGGTATAGTGCAT+GGG | + | chr3.1:62750763-62750782 | MS.gene28998:intron | 50.0% | |
| TTGAGGGCCGAACATCAAGA+AGG | - | chr3.1:62749187-62749206 | None:intergenic | 50.0% | |
| TTGGGGCATGGTATAGTGCA+TGG | + | chr3.1:62750762-62750781 | MS.gene28998:intron | 50.0% | |
| ! | ATTAGTGTTTTCGGCACGCC+TGG | + | chr3.1:62751524-62751543 | MS.gene28998:CDS | 50.0% |
| ! | CTTTTGGTCTGTTGTGGAGC+AGG | + | chr3.1:62750395-62750414 | MS.gene28998:intron | 50.0% |
| ! | TTCAGCGCCTCTTAAGTTGC+TGG | + | chr3.1:62750434-62750453 | MS.gene28998:intron | 50.0% |
| AAAGAGCCGCGTAGGTAGCT+CGG | - | chr3.1:62748960-62748979 | None:intergenic | 55.0% | |
| ACAAAGAGCTGCTGCAGCCA+AGG | + | chr3.1:62751485-62751504 | MS.gene28998:CDS | 55.0% | |
| GAGCAGGATCTTGTCGTGGA+GGG | + | chr3.1:62750411-62750430 | MS.gene28998:intron | 55.0% | |
| GAGGGCCGAACATCAAGAAG+GGG | - | chr3.1:62749185-62749204 | None:intergenic | 55.0% | |
| GGCTGCTGCCAGAAAGAGAT+GGG | + | chr3.1:62748404-62748423 | MS.gene28998:CDS | 55.0% | |
| GGGGAACTTCTCCGCAACTT+TGG | - | chr3.1:62749907-62749926 | None:intergenic | 55.0% | |
| GTTCTTACCCCAAGGGAAGC+TGG | + | chr3.1:62749134-62749153 | MS.gene28998:CDS | 55.0% | |
| TACCAACCGAGCTACCTACG+CGG | + | chr3.1:62748951-62748970 | MS.gene28998:intron | 55.0% | |
| TGCTGCAGCCAAGGAAGGTT+GGG | + | chr3.1:62751494-62751513 | MS.gene28998:CDS | 55.0% | |
| TGGCTGCTGCCAGAAAGAGA+TGG | + | chr3.1:62748403-62748422 | MS.gene28998:CDS | 55.0% | |
| TGTGGAGCAGGATCTTGTCG+TGG | + | chr3.1:62750407-62750426 | MS.gene28998:intron | 55.0% | |
| TTGCATGCCAGAAGGGACTG+AGG | + | chr3.1:62749946-62749965 | MS.gene28998:CDS | 55.0% | |
| ! | CGTAGGTAGCTCGGTTGGTA+AGG | - | chr3.1:62748951-62748970 | None:intergenic | 55.0% |
| !! | TGAACAGGAGGTTGGTGGAG+TGG | + | chr3.1:62749758-62749777 | MS.gene28998:intron | 55.0% |
| AGAGCTGCTGCAGCCAAGGA+AGG | + | chr3.1:62751489-62751508 | MS.gene28998:CDS | 60.0% | |
| CTGCTGCAGCCAAGGAAGGT+TGG | + | chr3.1:62751493-62751512 | MS.gene28998:CDS | 60.0% | |
| GAGCTCACCTCAGTCCCTTC+TGG | - | chr3.1:62749956-62749975 | None:intergenic | 60.0% | |
| GCTGCAGCCAAGGAAGGTTG+GGG | + | chr3.1:62751495-62751514 | MS.gene28998:CDS | 60.0% | |
| GGAGCAGGATCTTGTCGTGG+AGG | + | chr3.1:62750410-62750429 | MS.gene28998:intron | 60.0% | |
| AGCCGCGTAGGTAGCTCGGT+TGG | - | chr3.1:62748956-62748975 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 62748118 | 62751710 | 62748118 | ID=MS.gene28998 |
| chr3.1 | mRNA | 62748118 | 62751710 | 62748118 | ID=MS.gene28998.t1;Parent=MS.gene28998 |
| chr3.1 | exon | 62748118 | 62748258 | 62748118 | ID=MS.gene28998.t1.exon1;Parent=MS.gene28998.t1 |
| chr3.1 | CDS | 62748118 | 62748258 | 62748118 | ID=cds.MS.gene28998.t1;Parent=MS.gene28998.t1 |
| chr3.1 | exon | 62748339 | 62748434 | 62748339 | ID=MS.gene28998.t1.exon2;Parent=MS.gene28998.t1 |
| chr3.1 | CDS | 62748339 | 62748434 | 62748339 | ID=cds.MS.gene28998.t1;Parent=MS.gene28998.t1 |
| chr3.1 | exon | 62749113 | 62749220 | 62749113 | ID=MS.gene28998.t1.exon3;Parent=MS.gene28998.t1 |
| chr3.1 | CDS | 62749113 | 62749220 | 62749113 | ID=cds.MS.gene28998.t1;Parent=MS.gene28998.t1 |
| chr3.1 | exon | 62749590 | 62749701 | 62749590 | ID=MS.gene28998.t1.exon4;Parent=MS.gene28998.t1 |
| chr3.1 | CDS | 62749590 | 62749701 | 62749590 | ID=cds.MS.gene28998.t1;Parent=MS.gene28998.t1 |
| chr3.1 | exon | 62749768 | 62749804 | 62749768 | ID=MS.gene28998.t1.exon5;Parent=MS.gene28998.t1 |
| chr3.1 | CDS | 62749768 | 62749804 | 62749768 | ID=cds.MS.gene28998.t1;Parent=MS.gene28998.t1 |
| chr3.1 | exon | 62749893 | 62749967 | 62749893 | ID=MS.gene28998.t1.exon6;Parent=MS.gene28998.t1 |
| chr3.1 | CDS | 62749893 | 62749967 | 62749893 | ID=cds.MS.gene28998.t1;Parent=MS.gene28998.t1 |
| chr3.1 | exon | 62750213 | 62750304 | 62750213 | ID=MS.gene28998.t1.exon7;Parent=MS.gene28998.t1 |
| chr3.1 | CDS | 62750213 | 62750304 | 62750213 | ID=cds.MS.gene28998.t1;Parent=MS.gene28998.t1 |
| chr3.1 | exon | 62750450 | 62750483 | 62750450 | ID=MS.gene28998.t1.exon8;Parent=MS.gene28998.t1 |
| chr3.1 | CDS | 62750450 | 62750483 | 62750450 | ID=cds.MS.gene28998.t1;Parent=MS.gene28998.t1 |
| chr3.1 | exon | 62751473 | 62751545 | 62751473 | ID=MS.gene28998.t1.exon9;Parent=MS.gene28998.t1 |
| chr3.1 | CDS | 62751473 | 62751545 | 62751473 | ID=cds.MS.gene28998.t1;Parent=MS.gene28998.t1 |
| chr3.1 | exon | 62751627 | 62751710 | 62751627 | ID=MS.gene28998.t1.exon10;Parent=MS.gene28998.t1 |
| chr3.1 | CDS | 62751627 | 62751710 | 62751627 | ID=cds.MS.gene28998.t1;Parent=MS.gene28998.t1 |
| Gene Sequence |
| Protein sequence |
