AlfalfaGEDB | MS.gene08738

M. sativa cultivar XinJiangDaYe / MS.gene08738

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005737 GO:0006457 GO:0008144 GO:0008150 GO:0009987 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042026 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:0110165 GO:1901265 GO:1901363
PFAM: PF00118.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08738.t1	XP_013455979.1	99.1	587	5	0	1	587	1	587	4.50E-307	1063.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08738.t1	P08926	94.7	587	31	0	1	587	1	587	1.6e-297	1022.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08738.t1	I3SKN7	99.1	587	5	0	1	587	1	587	3.3e-307	1063.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene08738	0.805544	1.27E-49	-1.69E-46
MS.gene049351	MS.gene08738	0.843519	1.33E-58	-1.69E-46
MS.gene049389	MS.gene08738	0.805706	1.17E-49	-1.69E-46
MS.gene049491	MS.gene08738	0.826956	2.04E-54	-1.69E-46
MS.gene049758	MS.gene08738	0.84696	1.56E-59	-1.69E-46
MS.gene050076	MS.gene08738	0.810541	1.10E-50	-1.69E-46
MS.gene050099	MS.gene08738	0.995487	9.17E-217	-1.69E-46
MS.gene050301	MS.gene08738	0.859537	3.86E-63	-1.69E-46
MS.gene050397	MS.gene08738	0.811913	5.52E-51	-1.69E-46
MS.gene050529	MS.gene08738	0.812583	3.94E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene08738	MS.gene37341	PPI
MS.gene08738	MS.gene24508	PPI
MS.gene08738	MS.gene00538	PPI
MS.gene08738	MS.gene21583	PPI
MS.gene08738	MS.gene07775	PPI
MS.gene08738	MS.gene051662	PPI
MS.gene08738	MS.gene21581	PPI
MS.gene08738	MS.gene006906	PPI
MS.gene08738	MS.gene071148	PPI
MS.gene08738	MS.gene051663	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08738.t1	MTR_4g057970	99.148	587	5	0	1	587	1	587	0.0	1148
MS.gene08738.t1	MTR_4g084130	64.991	537	185	1	42	575	34	570	0.0	703
MS.gene08738.t1	MTR_4g084130	64.989	457	157	1	122	575	2	458	0.0	599
MS.gene08738.t1	MTR_1g017380	52.952	542	250	4	45	582	43	583	0.0	541
MS.gene08738.t1	MTR_1g017390	52.768	542	251	4	45	582	43	583	0.0	540
MS.gene08738.t1	MTR_1g090140	44.956	565	304	5	22	582	6	567	5.70e-160	469
MS.gene08738.t1	MTR_1g090130	45.405	555	296	5	22	572	6	557	4.45e-156	459
MS.gene08738.t1	MTR_8g017080	42.750	531	296	4	50	574	36	564	4.02e-140	419
MS.gene08738.t1	MTR_0991s0010	54.545	143	62	2	45	184	43	185	4.23e-43	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene08738.t1	AT2G28000	85.971	556	77	1	33	587	31	586	936
MS.gene08738.t1	AT5G18820	60.105	574	214	5	15	583	5	568	653
MS.gene08738.t1	AT5G56500	51.438	591	276	7	1	584	1	587	550
MS.gene08738.t1	AT5G56500	51.438	591	276	7	1	584	1	587	550
MS.gene08738.t1	AT5G18820	61.159	466	172	3	122	583	2	462	545
MS.gene08738.t1	AT1G55490	50.256	587	278	7	1	574	1	586	541
MS.gene08738.t1	AT1G55490	50.256	587	278	7	1	574	1	586	541
MS.gene08738.t1	AT1G55490	50.256	587	278	7	1	574	1	586	541
MS.gene08738.t1	AT1G55490	50.256	587	278	7	1	574	1	586	541
MS.gene08738.t1	AT1G55490	50.256	587	278	7	1	574	1	586	541

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Find 169 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATATAATTCCTCTGT+TGG	0.463003	4.2:+45104519	MS.gene08738:CDS
AAACGAGGAGGAAGACTCTA+TGG	0.398802	4.2:-45104243	None:intergenic
AAAGGATGAGTTGCAATCTA+GGG	0.556934	4.2:+45105146	MS.gene08738:CDS
AAAGGTGGAGATGATATAAA+AGG	0.339200	4.2:+45104042	MS.gene08738:CDS
AACAAGAAGGCCCAAATCAC+TGG	0.445601	4.2:-45105037	None:intergenic
AAGAGCTTGAGAAGTTGGCT+AGG	0.608935	4.2:+45104013	MS.gene08738:CDS
AAGATTTGTAACAAATTGGG+GGG	0.629058	4.2:-45104431	None:intergenic
AAGTAGTTGTGGAGAAAATT+AGG	0.307056	4.2:+45106076	MS.gene08738:CDS
AAGTTGGCTAGGCCTGTTAA+AGG	0.361241	4.2:+45104024	MS.gene08738:CDS
AAGTTTACGATCCTCAAGTT+CGG	0.483262	4.2:-45105292	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTGGAGATGATATAAA+AGG	+	chr4.2:45104042-45104061	MS.gene08738:CDS	30.0%
AAGATTTGTAACAAATTGGG+GGG	-	chr4.2:45104434-45104453	None:intergenic	30.0%
AAGTAGTTGTGGAGAAAATT+AGG	+	chr4.2:45106076-45106095	MS.gene08738:CDS	30.0%
AATAATAGTGGTAGAATCCT+TGG	-	chr4.2:45105112-45105131	None:intergenic	30.0%
AATGCCTATACATTGACAAA+AGG	-	chr4.2:45106009-45106028	None:intergenic	30.0%
AGGAATTGATAAAACAGTAG+CGG	+	chr4.2:45103981-45104000	MS.gene08738:CDS	30.0%
CAAACAAAGAAACAGAGTAT+GGG	-	chr4.2:45105794-45105813	None:intergenic	30.0%
CAAGATTTGTAACAAATTGG+GGG	-	chr4.2:45104435-45104454	None:intergenic	30.0%
CACTTGCTTTAACAGTAAAA+CGG	-	chr4.2:45102816-45102835	None:intergenic	30.0%
CTCAAATTATCATATACCTC+GGG	-	chr4.2:45102929-45102948	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	45102591	45106311	45102591	ID=MS.gene08738
chr4.2	mRNA	45102591	45106311	45102591	ID=MS.gene08738.t1;Parent=MS.gene08738
chr4.2	exon	45102591	45102647	45102591	ID=MS.gene08738.t1.exon1;Parent=MS.gene08738.t1
chr4.2	CDS	45102591	45102647	45102591	ID=cds.MS.gene08738.t1;Parent=MS.gene08738.t1
chr4.2	exon	45102748	45102931	45102748	ID=MS.gene08738.t1.exon2;Parent=MS.gene08738.t1
chr4.2	CDS	45102748	45102931	45102748	ID=cds.MS.gene08738.t1;Parent=MS.gene08738.t1
chr4.2	exon	45103590	45103711	45103590	ID=MS.gene08738.t1.exon3;Parent=MS.gene08738.t1
chr4.2	CDS	45103590	45103711	45103590	ID=cds.MS.gene08738.t1;Parent=MS.gene08738.t1
chr4.2	exon	45103856	45104063	45103856	ID=MS.gene08738.t1.exon4;Parent=MS.gene08738.t1
chr4.2	CDS	45103856	45104063	45103856	ID=cds.MS.gene08738.t1;Parent=MS.gene08738.t1
chr4.2	exon	45104153	45104298	45104153	ID=MS.gene08738.t1.exon5;Parent=MS.gene08738.t1
chr4.2	CDS	45104153	45104298	45104153	ID=cds.MS.gene08738.t1;Parent=MS.gene08738.t1
chr4.2	exon	45104412	45104718	45104412	ID=MS.gene08738.t1.exon6;Parent=MS.gene08738.t1
chr4.2	CDS	45104412	45104718	45104412	ID=cds.MS.gene08738.t1;Parent=MS.gene08738.t1
chr4.2	exon	45105022	45105473	45105022	ID=MS.gene08738.t1.exon7;Parent=MS.gene08738.t1
chr4.2	CDS	45105022	45105473	45105022	ID=cds.MS.gene08738.t1;Parent=MS.gene08738.t1
chr4.2	exon	45106024	45106311	45106024	ID=MS.gene08738.t1.exon8;Parent=MS.gene08738.t1
chr4.2	CDS	45106024	45106311	45106024	ID=cds.MS.gene08738.t1;Parent=MS.gene08738.t1

Gene Sequence

>MS.gene08738

ATGGCTTCAACCAACGCTCTATCCTCAACCTCAATTCTCCGTTCTCCTACCAACCAGGTAACTAACCATTTCCCCTTCATTCATTTTCATTTAATTTCTCCCAAAAGCACTTACCTACAAAATCGATTATCATTAATTTTCCGATTATTTGTTTCAGGCACAAACGAGTTTAAGCAGGAAGGCGAACCAACATGGGAGGGTTAATTACAGACAGAAAGTTAACCGTTTTACTGTTAAAGCAAGTGCTAAAGATATTGCCTTTGACCAAGATTCACGCCGTGCTATGCAGGCTGGAATTGATAAACTTGCTGATGCTGTTGGCCTTACTCTCGGACCCCGAGGTATATGATAATTTGAGTAATTGAATGTAATTATATGTGTTGGTGTCGTGTTCGAGTAATTGAGTGTAATTATATGTGTTGTCTCATACTGGACATGTCTTCAATCTGATGCGTTAGTGAAAACATGGAATGTGACTTTGGATTTGCATAAATGGAAAAACTCAAATTTGTGTGTATGAATCTGAATGTATTTTTTCGGATAAAATGTTGCCCTGTTTGGAAAGAGAGCTTATTTTGTAGGTTATAGCACATAAGCGCTTATGAATAAGCTATTTATGTGACACAAGATAAAATTGAGTCAAATTGTTTTCGTCTAATCTATAAGTTGTTTTAATAAACTATACCGGAGAGTTTATGTAAATAATCTGGAAATAGCTCATGAACATTTCATTAGCTGTTTTTGTAAGTTCTCTCAAATAGTGTCAGATGGTGTTTCTGTCGGTAGATAAGCTCAAATAAGCTAATCGGAACAGACCCATGTATCTTTTTGAAATGTACTTCTAGAAAGTGTGGATTTTTTTAGAAATGTGAGGTGGAAAATGTTTCCCTCTTTATATAAATAAATAAATAAATTGTCTTTTTATTCTGAAATTTTAGTATTATTGCTATTATATGGGTTAGCAATGTGAAACATTGTTTTTTTTTTTTTTTTTTGAAGGGAGGAATGTTGTTTTGGATGAGTTTGGCAGTCCTAAGGTTGTAAACGATGGTGTGACAATTGCAAGAGCTATTGAGTTACCTGATGCTATGGAAAATGCTGGTGCAGCTCTAATTAGGGAGGTATGTGATAATTGATAAATAAAGAGTTTAAATTATTTTGTTGCTTTTGAAGATTTTTGTGTATATGGTTTTTGATTATTCTTTTTTTGTTTGAATCGGTGGTTTTTGGTTACTTATGACGATGATGTTGATTTAAAACTGAAGGTTGCTAGTAAAACTAATGACTCAGCTGGAGATGGGACTACAACGGCTTCGATTTTGGCTCGGGAAATCATTAAGCTTGGACTTCTCAGTGTGACATCAGGTGCTAATCCTGTGTCAATCAAGAAAGGAATTGATAAAACAGTAGCGGCTTTGGTGGAAGAGCTTGAGAAGTTGGCTAGGCCTGTTAAAGGTGGAGATGATATAAAAGGTATTGGTATTACTATAAGAACATTTGATTTGGTTTCATTTTGACCAGTTGTTGTAATGTCATGCTAATGAGTTTTGATGTTGTATCAGCTGTTGCTTCTATTTCTGCTGGAAATGATGAGTTGATTGGAACAATGATTGCTGAAGCAATTGGCAAGGTTGGACCTGATGGTGTTTTATCCATAGAGTCTTCCTCCTCGTTTGAGACAACCGTCGAAGTCGAAGAAGGAATGGAGGTATGAACTCTTTGCTGGATTTGACATCTTTTCTTTCCCGGTGAATGTTTATAATTGGAAGAAAAGAGTTTTAAAGCTTCCACTTCTAATTTTATTGCTTTTATGACTTGTAGATTGACAGAGGGTATATCTCCCCCCAATTTGTTACAAATCTTGAGAAATCAATTGTTGAATTTGAGAATGCAAGAGTCTTGATTACCGACCAAAAGATTTCCGCAATAAAAGATATAATTCCTCTGTTGGAGAAAACCACTCAATTGAGAGCCCCTTTGCTTATCATTGCCGAAGATATCACTGGTGAGGCTTTGGCTACCCTTGTTGTGAACAAGCTGCGTGGTATCCTTAATGTGGCTGCCATCAAAGCTCCAGGATTTGGTGAGAGAAGAAAGGCCCTCCTTCAAGACATTGCAATATTGACAGGTATGTTAAATTTAGACGTATTCATTGTTTTTTGGATACTGCAAGCATCATAATATATGTGGTGATGTCCAGTCATGTACTATGTAGGTTTTTACTGTTTAATCATGTTAAATAATGGTTAATCCTGTTCAAAAATTTAGTTTATGTAAAAGAAGATATAGTCATTGTTTAGTTACTTTTGATATTTGTTTCAACTGTTTAAGTTATTCTGCCATGATACAACAAAGAACCGATGGCAAGGAAACACAAGTTGTGGAATTATCATAGACATTTCTTTGACAATTTTGTGCATTTAACTGCTAGGTGCTGAGTTCCAGGCCAGTGATTTGGGCCTTCTTGTTGAAAGCACCTCAATTGAACAACTCGGTTTGGCTCGAAAAGTGACCATCTCCAAGGATTCTACCACTATTATTGCTGATGCTGCATCAAAGGATGAGTTGCAATCTAGGGTTGCACAACTGAAGAAAGAGTTGTTTGAGACAGACTCAGTTTACGATTCGGAGAAACTGGCCGAGAGGATCGCTAAATTGTCTGGTGGAGTTGCAGTCATCAAGGTCGGTGCTGCTACAGAGACCGAACTTGAGGATCGTAAACTTAGAATTGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTTCCTGGAGGAGGTACTGCATTGGTTCATCTCTCTGCTTATGTTCCAGCAATCAAGGAAACACTAGAAGACGCAGATGAGAGGCTAGGAGCTGACATTGTTCAAAAGGTGAGAATGCTGATCAAATTTGCACATATTTTGACCAGTATGCTATGATTATTGTTTTCATGTCATGTTCCATGATTACAATTTACAACAATCTGAAAAAACACAAATTTACACTATAAGCACAAATAATATCAACATTTTTCTTTACAATTTACAACAATCTGAAAAACCACAAATTTACACTGTAAGCACAAATAATATCAACATTTCCAGGGTATTCTGGTTTACCTTATAAATTAATGTTTCAAGCATCATATAACTCGTGGAAAAAATAAAGTAATATCAACATTTTCAGGTTATTCTGGTATATTGTTTATCCCATACTCTGTTTCTTTGTTTGGGTCAAAAGGGGAAAGAATAATTTTAAGATTTTATGAGTGTCACATTAGCAAAACAATTAAGTCAAAATGACTGTTATTTCCAGTTTTCAAGAAAATCCATTTATTTTTCATCCCTTTTTTTTCCCTATCAAAACTTCATCAATATCTGATATTTGATACGACTAAAAAATATTACTGATGAGTTGTTTTTTCCTTTTGTCAATGTATAGGCATTGGTAGCACCTGCATCATTGATTGCTCAAAATGCTGGAATAGAAGGTGAAGTAGTTGTGGAGAAAATTAGGAGTGGTGAATGGGAGGTTGGTTACAATGCCATGACAGACACTTATGAGAATTTAATTGACTCCGGAGTCATCGACCCTGCAAAGGTAACAAGGTGTGCTCTGCAGAATGCTGCTTCAGTGGCTGGGATGGTCTTGACCACACAGGCCATTGTTGTCGAAAAGCCTAAGCCCAGGGCAGGTGTGGCTGCTGCCCCACAAGGCCTTACCGTTTAA

Protein sequence

>MS.gene08738.t1

MASTNALSSTSILRSPTNQAQTSLSRKANQHGRVNYRQKVNRFTVKASAKDIAFDQDSRRAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLSVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVASISAGNDELIGTMIAEAIGKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNLEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVESTSIEQLGLARKVTISKDSTTIIADAASKDELQSRVAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSAYVPAIKETLEDADERLGADIVQKALVAPASLIAQNAGIEGEVVVEKIRSGEWEVGYNAMTDTYENLIDSGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPRAGVAAAPQGLTV