Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053404.t1 | PNY15292.1 | 81.4 | 570 | 81 | 3 | 1 | 547 | 1 | 568 | 1.30E-260 | 908.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053404.t1 | Q9SW96 | 63.8 | 575 | 177 | 4 | 1 | 547 | 1 | 572 | 1.4e-210 | 733.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053404.t1 | A0A2K3PJ28 | 81.4 | 570 | 81 | 3 | 1 | 547 | 1 | 568 | 9.6e-261 | 908.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053404 | MS.gene057884 | PPI |
| MS.gene81615 | MS.gene053404 | PPI |
| MS.gene016743 | MS.gene053404 | PPI |
| MS.gene070492 | MS.gene053404 | PPI |
| MS.gene057883 | MS.gene053404 | PPI |
| MS.gene016742 | MS.gene053404 | PPI |
| MS.gene053404 | MS.gene67840 | PPI |
| MS.gene070510 | MS.gene053404 | PPI |
| MS.gene81622 | MS.gene053404 | PPI |
| MS.gene053404 | MS.gene81617 | PPI |
| MS.gene37911 | MS.gene053404 | PPI |
| MS.gene070509 | MS.gene053404 | PPI |
| MS.gene053404 | MS.gene070503 | PPI |
| MS.gene81620 | MS.gene053404 | PPI |
| MS.gene070505 | MS.gene053404 | PPI |
| MS.gene057886 | MS.gene053404 | PPI |
| MS.gene053404 | MS.gene016758 | PPI |
| MS.gene053404 | MS.gene070511 | PPI |
| MS.gene070507 | MS.gene053404 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053404.t1 | MTR_7g101050 | 82.038 | 579 | 69 | 7 | 1 | 547 | 1 | 576 | 0.0 | 937 |
| MS.gene053404.t1 | MTR_8g102050 | 84.239 | 552 | 62 | 4 | 19 | 547 | 2 | 551 | 0.0 | 931 |
| MS.gene053404.t1 | MTR_4g100920 | 49.908 | 543 | 214 | 11 | 12 | 547 | 55 | 546 | 2.31e-175 | 506 |
| MS.gene053404.t1 | MTR_8g011530 | 43.630 | 573 | 280 | 10 | 5 | 546 | 72 | 632 | 2.77e-157 | 463 |
| MS.gene053404.t1 | MTR_4g100920 | 45.786 | 439 | 180 | 11 | 12 | 443 | 55 | 442 | 1.80e-118 | 358 |
| MS.gene053404.t1 | MTR_1g014140 | 30.249 | 281 | 176 | 8 | 271 | 544 | 271 | 538 | 1.99e-26 | 113 |
| MS.gene053404.t1 | MTR_5g028360 | 29.893 | 281 | 177 | 9 | 271 | 544 | 319 | 586 | 2.34e-25 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053404.t1 | AT5G56680 | 63.826 | 575 | 177 | 4 | 1 | 547 | 1 | 572 | 0.0 | 767 |
| MS.gene053404.t1 | AT1G70980 | 63.937 | 574 | 177 | 7 | 1 | 547 | 1 | 571 | 0.0 | 743 |
| MS.gene053404.t1 | AT4G17300 | 49.623 | 530 | 212 | 10 | 25 | 547 | 86 | 567 | 3.27e-173 | 501 |
| MS.gene053404.t1 | AT4G17300 | 49.623 | 530 | 212 | 10 | 25 | 547 | 106 | 587 | 6.00e-173 | 501 |
| MS.gene053404.t1 | AT3G07420 | 45.437 | 504 | 244 | 9 | 68 | 546 | 140 | 637 | 1.83e-147 | 438 |
| MS.gene053404.t1 | AT3G07420 | 42.298 | 383 | 190 | 9 | 68 | 425 | 140 | 516 | 5.60e-92 | 292 |
| MS.gene053404.t1 | AT1G68420 | 63.636 | 77 | 28 | 0 | 301 | 377 | 1 | 77 | 1.28e-28 | 109 |
| MS.gene053404.t1 | AT4G31180 | 32.384 | 281 | 170 | 9 | 271 | 544 | 288 | 555 | 1.80e-28 | 119 |
| MS.gene053404.t1 | AT4G31180 | 32.384 | 281 | 170 | 9 | 271 | 544 | 288 | 555 | 1.80e-28 | 119 |
| MS.gene053404.t1 | AT4G26870 | 30.769 | 286 | 160 | 10 | 271 | 540 | 262 | 525 | 4.18e-27 | 115 |
| MS.gene053404.t1 | AT5G38750 | 33.537 | 164 | 66 | 4 | 18 | 178 | 4 | 127 | 1.78e-16 | 76.6 |
Find 138 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAATATCCTTTGCCTAAA+AGG | 0.177868 | 1.4:+27585213 | MS.gene053404:CDS |
| CCAGGCATTTGGCTGAATTT+TGG | 0.190908 | 1.4:+27585756 | MS.gene053404:CDS |
| TCTTGAGGATATGCAATTTA+TGG | 0.198036 | 1.4:+27585877 | MS.gene053404:CDS |
| CTTAGACAACTTGTTCTTAC+TGG | 0.233716 | 1.4:+27585077 | MS.gene053404:CDS |
| TAGAATGGTTTGATACCTTT+TGG | 0.274490 | 1.4:-27586121 | None:intergenic |
| TTGCATCGATCGTTTGAAAA+TGG | 0.283409 | 1.4:+27585919 | MS.gene053404:CDS |
| AGGAATATCGGGCTGAAGTT+TGG | 0.310492 | 1.4:-27585579 | None:intergenic |
| AATTTGAGAAGGAAGTAAAA+TGG | 0.311241 | 1.4:+27586020 | MS.gene053404:CDS |
| CATCTCAAACTTCCTCATTC+TGG | 0.318006 | 1.4:+27585122 | MS.gene053404:CDS |
| TTCTCACACTTCCAGGCATT+TGG | 0.323004 | 1.4:+27585745 | MS.gene053404:CDS |
| TACCATTCATATGGCTTAAC+AGG | 0.325352 | 1.4:-27586280 | None:intergenic |
| GCCGTCTTCACGGCAGATTA+TGG | 0.326140 | 1.4:-27584904 | None:intergenic |
| TCCGTCCTTTCGAGGAATAT+CGG | 0.331192 | 1.4:-27585591 | None:intergenic |
| AAGTCTGCAAACGCGATTTC+AGG | 0.337547 | 1.4:-27585788 | None:intergenic |
| AACGATAACTTGAAGGTTAC+CGG | 0.339980 | 1.4:-27585036 | None:intergenic |
| TCCATCGTTCAATTCCAAAA+AGG | 0.340581 | 1.4:-27585006 | None:intergenic |
| CTTAGTAGTGTGTATACATT+TGG | 0.341074 | 1.4:+27585701 | MS.gene053404:CDS |
| TCTTATACTTCGTCTCTGTT+AGG | 0.342134 | 1.4:-27586075 | None:intergenic |
| ATGGCTGATAAGGTTGATAA+AGG | 0.344858 | 1.4:+27585896 | MS.gene053404:CDS |
| ATTTGAGAAGGAAGTAAAAT+GGG | 0.355264 | 1.4:+27586021 | MS.gene053404:CDS |
| CCAAAGGTTGGAGAGTTAAT+TGG | 0.360690 | 1.4:+27586196 | MS.gene053404:CDS |
| TACAGAAGCCGTGGAAATAC+TGG | 0.367856 | 1.4:+27585973 | MS.gene053404:CDS |
| CAGAGAATTCTCACACTTCC+AGG | 0.368101 | 1.4:+27585738 | MS.gene053404:CDS |
| AGCAGATATCGTGTTGGTTC+TGG | 0.374309 | 1.4:-27585279 | None:intergenic |
| TGAAATCGCGTTTGCAGACT+TGG | 0.375982 | 1.4:+27585790 | MS.gene053404:CDS |
| GTTCGATGTTGAAGCTGTTA+AGG | 0.381493 | 1.4:+27585439 | MS.gene053404:CDS |
| AAAGGCGAAAGCACCCTTAT+CGG | 0.396068 | 1.4:-27584988 | None:intergenic |
| TGCCGTGAAGACGGCGGATC+AGG | 0.396893 | 1.4:+27584912 | MS.gene053404:CDS |
| GGATATTTAGCAGGATCAAC+AGG | 0.402646 | 1.4:-27585200 | None:intergenic |
| AAACATGCTGGATTCGGTCT+TGG | 0.405121 | 1.4:+27586331 | MS.gene053404:CDS |
| GCGGTCCGAGAATTCAGCTT+TGG | 0.405417 | 1.4:-27584868 | None:intergenic |
| TATGCAATTTATGGCTGATA+AGG | 0.406440 | 1.4:+27585886 | MS.gene053404:CDS |
| AACTTGAAGGTTACCGGCAC+AGG | 0.417890 | 1.4:-27585030 | None:intergenic |
| CGGCAGATTATGGATTGAAT+CGG | 0.418024 | 1.4:-27584894 | None:intergenic |
| AGAGGGTTACCGTGGATAAC+TGG | 0.418145 | 1.4:-27584830 | None:intergenic |
| CCGTCCTTTCGAGGAATATC+GGG | 0.423115 | 1.4:-27585590 | None:intergenic |
| CAATCAATAGTCGTGACAAT+TGG | 0.426024 | 1.4:-27585380 | None:intergenic |
| CCAATTAACTCTCCAACCTT+TGG | 0.429345 | 1.4:-27586196 | None:intergenic |
| CATCATAACGCTCCTCCCTT+TGG | 0.431653 | 1.4:-27586225 | None:intergenic |
| CGGTCCGAGAATTCAGCTTT+GGG | 0.431998 | 1.4:-27584867 | None:intergenic |
| GGAACTTGTGTAGTTGTTGA+TGG | 0.435212 | 1.4:+27585098 | MS.gene053404:CDS |
| AACCGGAAGAAAAGCCGATA+AGG | 0.438538 | 1.4:+27584974 | MS.gene053404:CDS |
| TTAAGGAGAAGGGGATAAGA+AGG | 0.443358 | 1.4:+27585456 | MS.gene053404:CDS |
| TCTACCTTTCCGTCCTTTCG+AGG | 0.444839 | 1.4:-27585599 | None:intergenic |
| GATTCTCTTTGCTACCGGCC+TGG | 0.445257 | 1.4:+27586366 | MS.gene053404:CDS |
| CCAAAATTCAGCCAAATGCC+TGG | 0.449352 | 1.4:-27585756 | None:intergenic |
| GATTCGGTCTTGGCTTTGAA+AGG | 0.456155 | 1.4:+27586341 | MS.gene053404:CDS |
| TCACTGTTCCATACCGCCTC+AGG | 0.466762 | 1.4:-27586309 | None:intergenic |
| TCCATAATCTGCCGTGAAGA+CGG | 0.470318 | 1.4:+27584903 | MS.gene053404:CDS |
| ACAGTGAAACATGCTGGATT+CGG | 0.470528 | 1.4:+27586325 | MS.gene053404:CDS |
| AAGCTTCAACGATAACTTGA+AGG | 0.473651 | 1.4:-27585043 | None:intergenic |
| GGTTCCCAAAGCTGAATTCT+CGG | 0.474163 | 1.4:+27584863 | MS.gene053404:CDS |
| AACCTGATCCGCCGTCTTCA+CGG | 0.474312 | 1.4:-27584914 | None:intergenic |
| TTTCATAAATCTGCTCTGCC+AGG | 0.478444 | 1.4:-27586424 | None:intergenic |
| ATTCCCTTCCCACGATATCC+TGG | 0.485303 | 1.4:+27586406 | MS.gene053404:CDS |
| AGGTCAATGTACCATTCATA+TGG | 0.485564 | 1.4:-27586289 | None:intergenic |
| GATCGAGCTTCGCGCTGAAG+AGG | 0.487208 | 1.4:+27585163 | MS.gene053404:CDS |
| TTCTGTTTCGCTCCAGAATG+AGG | 0.487604 | 1.4:-27585134 | None:intergenic |
| TGTATATGTAAGTCGAATGA+AGG | 0.488290 | 1.4:-27585954 | None:intergenic |
| AATTCTCTGCTCGAAATGTC+GGG | 0.488819 | 1.4:-27585724 | None:intergenic |
| TTAGGCAAAGGATATTTAGC+AGG | 0.488927 | 1.4:-27585209 | None:intergenic |
| ATCGGAGGATGGGTGAAAAC+CGG | 0.489249 | 1.4:+27584957 | MS.gene053404:CDS |
| ATAGTCTATAATTATCCAAA+AGG | 0.495051 | 1.4:+27586106 | MS.gene053404:CDS |
| CCTAGAGACAGTGGCTGCTA+TGG | 0.495878 | 1.4:+27586162 | MS.gene053404:CDS |
| GCTGAAGAGGTTGTTCATGT+TGG | 0.498344 | 1.4:+27585176 | MS.gene053404:CDS |
| TACATTGACCTGAGGCGGTA+TGG | 0.502024 | 1.4:+27586301 | MS.gene053404:CDS |
| GGATAATTATAGACTATGAC+AGG | 0.507099 | 1.4:-27586100 | None:intergenic |
| CCATAGCAGCCACTGTCTCT+AGG | 0.509076 | 1.4:-27586162 | None:intergenic |
| GAATTCTCTGCTCGAAATGT+CGG | 0.511450 | 1.4:-27585725 | None:intergenic |
| TCATTGAGGCGCATGTAGAA+TGG | 0.512501 | 1.4:-27586136 | None:intergenic |
| GACGGCGGATCAGGTTTAGC+AGG | 0.513325 | 1.4:+27584921 | MS.gene053404:CDS |
| AGGATGATTCTCTTTGCTAC+CGG | 0.513522 | 1.4:+27586361 | MS.gene053404:CDS |
| CTGGAAGAATCTGCGAAGAA+TGG | 0.519997 | 1.4:+27585992 | MS.gene053404:CDS |
| TTGAACGATGGAACCTGTGC+CGG | 0.520799 | 1.4:+27585017 | MS.gene053404:CDS |
| GGGAACCTCGTCGGAGGAGA+GGG | 0.522118 | 1.4:-27584847 | None:intergenic |
| ACCGGAAGAAAAGCCGATAA+GGG | 0.523007 | 1.4:+27584975 | MS.gene053404:CDS |
| GCAGGCAAGAAAGCTAGAAT+CGG | 0.528940 | 1.4:+27584939 | MS.gene053404:CDS |
| TGTCATTCAACAAGGACTAA+AGG | 0.529353 | 1.4:+27586246 | MS.gene053404:CDS |
| AATCGCGTTTGCAGACTTGG+AGG | 0.529982 | 1.4:+27585793 | MS.gene053404:CDS |
| GGCAGATTATGGATTGAATC+GGG | 0.531948 | 1.4:-27584893 | None:intergenic |
| TGGGAACCTCGTCGGAGGAG+AGG | 0.533868 | 1.4:-27584848 | None:intergenic |
| AGAAAGCTAGAATCGGAGGA+TGG | 0.535348 | 1.4:+27584946 | MS.gene053404:CDS |
| GTTGAAGCTGTTAAGGAGAA+GGG | 0.541265 | 1.4:+27585446 | MS.gene053404:CDS |
| TTGAAGCTGTTAAGGAGAAG+GGG | 0.541889 | 1.4:+27585447 | MS.gene053404:CDS |
| ATCCGCAAAAGCAGATAAGA+AGG | 0.542330 | 1.4:+27585532 | MS.gene053404:CDS |
| GATGTTCTTGTGCCAAAGGT+TGG | 0.542344 | 1.4:+27586184 | MS.gene053404:CDS |
| ACTATTGATTGCGAGGGTGC+TGG | 0.546380 | 1.4:+27585392 | MS.gene053404:CDS |
| AAGGTTGGAGAGTTAATTGG+TGG | 0.550938 | 1.4:+27586199 | MS.gene053404:CDS |
| AGATTCTTCCAGTATTTCCA+CGG | 0.551909 | 1.4:-27585981 | None:intergenic |
| TGTTGAAGCTGTTAAGGAGA+AGG | 0.553103 | 1.4:+27585445 | MS.gene053404:CDS |
| TATGGATGTTCTTGTGCCAA+AGG | 0.553956 | 1.4:+27586180 | MS.gene053404:CDS |
| CCCGATATTCCTCGAAAGGA+CGG | 0.554931 | 1.4:+27585590 | MS.gene053404:CDS |
| AGTTAATTGGTGGAAGCCAA+AGG | 0.559685 | 1.4:+27586209 | MS.gene053404:CDS |
| TCTGCTCTGCCAGGATATCG+TGG | 0.559764 | 1.4:-27586415 | None:intergenic |
| ACACGATATCTGCTGTTGCT+CGG | 0.565153 | 1.4:+27585288 | MS.gene053404:CDS |
| TATGGAACAGTGAAACATGC+TGG | 0.566811 | 1.4:+27586319 | MS.gene053404:CDS |
| ATTGCGAGGGTGCTGGTGAA+AGG | 0.569925 | 1.4:+27585399 | MS.gene053404:CDS |
| TTCAGCTTTGGGAACCTCGT+CGG | 0.571743 | 1.4:-27584856 | None:intergenic |
| GAAAGCTAGAATCGGAGGAT+GGG | 0.575623 | 1.4:+27584947 | MS.gene053404:CDS |
| GTATATGTAAGTCGAATGAA+GGG | 0.579832 | 1.4:-27585953 | None:intergenic |
| GGCAAGAAAGCTAGAATCGG+AGG | 0.582938 | 1.4:+27584942 | MS.gene053404:CDS |
| GAAGGAGATTAGTGCTGCTG+AGG | 0.583715 | 1.4:+27585550 | MS.gene053404:CDS |
| TGCCTGTTAAGCCATATGAA+TGG | 0.583784 | 1.4:+27586278 | MS.gene053404:CDS |
| CTGCCAGGATATCGTGGGAA+GGG | 0.584465 | 1.4:-27586409 | None:intergenic |
| AAATCACGCAAAACTTCAAG+AGG | 0.593482 | 1.4:-27585242 | None:intergenic |
| GTTACTTGACAACTGTCTTG+AGG | 0.594479 | 1.4:+27585862 | MS.gene053404:CDS |
| GTCACGACTATTGATTGCGA+GGG | 0.597022 | 1.4:+27585386 | MS.gene053404:CDS |
| GTTAATTGGTGGAAGCCAAA+GGG | 0.599290 | 1.4:+27586210 | MS.gene053404:CDS |
| GAATGGTCAGAAATTTGAGA+AGG | 0.604552 | 1.4:+27586009 | MS.gene053404:CDS |
| GGTCGGACGGTGGTGATGAG+AGG | 0.605120 | 1.4:-27584809 | None:intergenic |
| ACCGTGGATAACTGGTCGGA+CGG | 0.609180 | 1.4:-27584822 | None:intergenic |
| CTGTCTCTAGGTCGTCATTG+AGG | 0.610010 | 1.4:-27586150 | None:intergenic |
| GAAGGAGATTAGTGCTGCTG+TGG | 0.610064 | 1.4:+27585474 | MS.gene053404:CDS |
| CGTTATGATGTCATTCAACA+AGG | 0.613502 | 1.4:+27586238 | MS.gene053404:CDS |
| TCAGCCCGATATTCCTCGAA+AGG | 0.613632 | 1.4:+27585586 | MS.gene053404:CDS |
| TTATGGATTGAATCGGGACG+CGG | 0.617154 | 1.4:-27584887 | None:intergenic |
| AGCTTTGGGAACCTCGTCGG+AGG | 0.618057 | 1.4:-27584853 | None:intergenic |
| TGTCACGACTATTGATTGCG+AGG | 0.620740 | 1.4:+27585385 | MS.gene053404:CDS |
| CTGCTCTGCCAGGATATCGT+GGG | 0.624533 | 1.4:-27586414 | None:intergenic |
| TTTGAGAAGGAAGTAAAATG+GGG | 0.626158 | 1.4:+27586022 | MS.gene053404:CDS |
| TCTGCCAGGATATCGTGGGA+AGG | 0.640927 | 1.4:-27586410 | None:intergenic |
| AATGGTACATTGACCTGAGG+CGG | 0.645218 | 1.4:+27586296 | MS.gene053404:CDS |
| ACTTACATATACAGAAGCCG+TGG | 0.654722 | 1.4:+27585964 | MS.gene053404:CDS |
| ATAATCTGCCGTGAAGACGG+CGG | 0.657362 | 1.4:+27584906 | MS.gene053404:CDS |
| TATTCCTCGAAAGGACGGAA+AGG | 0.658806 | 1.4:+27585595 | MS.gene053404:CDS |
| GTGGATAACTGGTCGGACGG+TGG | 0.662379 | 1.4:-27584819 | None:intergenic |
| AGCAACAGCAGATATCGTGT+TGG | 0.663258 | 1.4:-27585285 | None:intergenic |
| ATATGTAAGTCGAATGAAGG+GGG | 0.666943 | 1.4:-27585951 | None:intergenic |
| ACCGTCCGACCAGTTATCCA+CGG | 0.669853 | 1.4:+27584821 | MS.gene053404:CDS |
| AATTGGTGGAAGCCAAAGGG+AGG | 0.678168 | 1.4:+27586213 | MS.gene053404:CDS |
| GTCGGAGGAGAGGGTTACCG+TGG | 0.682551 | 1.4:-27584838 | None:intergenic |
| ATGAATGGTACATTGACCTG+AGG | 0.689555 | 1.4:+27586293 | MS.gene053404:CDS |
| CAATGACGACCTAGAGACAG+TGG | 0.692832 | 1.4:+27586153 | MS.gene053404:CDS |
| TATATGTAAGTCGAATGAAG+GGG | 0.702544 | 1.4:-27585952 | None:intergenic |
| GGTTACCGTGGATAACTGGT+CGG | 0.706814 | 1.4:-27584826 | None:intergenic |
| GGTAACCCTCTCCTCCGACG+AGG | 0.713572 | 1.4:+27584842 | MS.gene053404:CDS |
| AATCACGCAAAACTTCAAGA+GGG | 0.718553 | 1.4:-27585241 | None:intergenic |
| GGATGATATGAAGTGCGCTG+AGG | 0.752084 | 1.4:+27585814 | MS.gene053404:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTCTATAATTATCCAAA+AGG | + | chr1.4:27586106-27586125 | MS.gene053404:CDS | 20.0% |
| ! | AATTTGAGAAGGAAGTAAAA+TGG | + | chr1.4:27586020-27586039 | MS.gene053404:CDS | 25.0% |
| ! | ATTTGAGAAGGAAGTAAAAT+GGG | + | chr1.4:27586021-27586040 | MS.gene053404:CDS | 25.0% |
| CTAAATATCCTTTGCCTAAA+AGG | + | chr1.4:27585213-27585232 | MS.gene053404:CDS | 30.0% | |
| CTTAGTAGTGTGTATACATT+TGG | + | chr1.4:27585701-27585720 | MS.gene053404:CDS | 30.0% | |
| GGATAATTATAGACTATGAC+AGG | - | chr1.4:27586103-27586122 | None:intergenic | 30.0% | |
| GTATATGTAAGTCGAATGAA+GGG | - | chr1.4:27585956-27585975 | None:intergenic | 30.0% | |
| TATATGTAAGTCGAATGAAG+GGG | - | chr1.4:27585955-27585974 | None:intergenic | 30.0% | |
| TATGCAATTTATGGCTGATA+AGG | + | chr1.4:27585886-27585905 | MS.gene053404:CDS | 30.0% | |
| TCTTGAGGATATGCAATTTA+TGG | + | chr1.4:27585877-27585896 | MS.gene053404:CDS | 30.0% | |
| TGTATATGTAAGTCGAATGA+AGG | - | chr1.4:27585957-27585976 | None:intergenic | 30.0% | |
| TTTGAGAAGGAAGTAAAATG+GGG | + | chr1.4:27586022-27586041 | MS.gene053404:CDS | 30.0% | |
| ! | ATGTCAAATTTTTGTGTCAG+TGG | + | chr1.4:27585840-27585859 | MS.gene053404:CDS | 30.0% |
| ! | TAGAATGGTTTGATACCTTT+TGG | - | chr1.4:27586124-27586143 | None:intergenic | 30.0% |
| !! | CAAGCATTTTTAACTGTTTC+TGG | + | chr1.4:27585647-27585666 | MS.gene053404:CDS | 30.0% |
| !! | CATACATTTTTCAACAAGCA+TGG | + | chr1.4:27585338-27585357 | MS.gene053404:CDS | 30.0% |
| AAATCACGCAAAACTTCAAG+AGG | - | chr1.4:27585245-27585264 | None:intergenic | 35.0% | |
| AACGATAACTTGAAGGTTAC+CGG | - | chr1.4:27585039-27585058 | None:intergenic | 35.0% | |
| AAGCTTCAACGATAACTTGA+AGG | - | chr1.4:27585046-27585065 | None:intergenic | 35.0% | |
| AATCACGCAAAACTTCAAGA+GGG | - | chr1.4:27585244-27585263 | None:intergenic | 35.0% | |
| AGATTCTTCCAGTATTTCCA+CGG | - | chr1.4:27585984-27586003 | None:intergenic | 35.0% | |
| AGGTCAATGTACCATTCATA+TGG | - | chr1.4:27586292-27586311 | None:intergenic | 35.0% | |
| ATATGTAAGTCGAATGAAGG+GGG | - | chr1.4:27585954-27585973 | None:intergenic | 35.0% | |
| CAATCAATAGTCGTGACAAT+TGG | - | chr1.4:27585383-27585402 | None:intergenic | 35.0% | |
| CGTTATGATGTCATTCAACA+AGG | + | chr1.4:27586238-27586257 | MS.gene053404:CDS | 35.0% | |
| GAATGGTCAGAAATTTGAGA+AGG | + | chr1.4:27586009-27586028 | MS.gene053404:CDS | 35.0% | |
| GTGGATGAACTTAAAAAAGC+TGG | + | chr1.4:27585493-27585512 | MS.gene053404:CDS | 35.0% | |
| TACCATTCATATGGCTTAAC+AGG | - | chr1.4:27586283-27586302 | None:intergenic | 35.0% | |
| TCCATCGTTCAATTCCAAAA+AGG | - | chr1.4:27585009-27585028 | None:intergenic | 35.0% | |
| TCTTATACTTCGTCTCTGTT+AGG | - | chr1.4:27586078-27586097 | None:intergenic | 35.0% | |
| TGTCATTCAACAAGGACTAA+AGG | + | chr1.4:27586246-27586265 | MS.gene053404:CDS | 35.0% | |
| TTAGGCAAAGGATATTTAGC+AGG | - | chr1.4:27585212-27585231 | None:intergenic | 35.0% | |
| ! | CTTAGACAACTTGTTCTTAC+TGG | + | chr1.4:27585077-27585096 | MS.gene053404:CDS | 35.0% |
| ! | TCACATCTCGAATATTTTCC+AGG | - | chr1.4:27586387-27586406 | None:intergenic | 35.0% |
| ! | TTGCATCGATCGTTTGAAAA+TGG | + | chr1.4:27585919-27585938 | MS.gene053404:CDS | 35.0% |
| !! | ATGGCTGATAAGGTTGATAA+AGG | + | chr1.4:27585896-27585915 | MS.gene053404:CDS | 35.0% |
| AAGGTTGGAGAGTTAATTGG+TGG | + | chr1.4:27586199-27586218 | MS.gene053404:CDS | 40.0% | |
| AATTCTCTGCTCGAAATGTC+GGG | - | chr1.4:27585727-27585746 | None:intergenic | 40.0% | |
| ACAGTGAAACATGCTGGATT+CGG | + | chr1.4:27586325-27586344 | MS.gene053404:CDS | 40.0% | |
| ACTTACATATACAGAAGCCG+TGG | + | chr1.4:27585964-27585983 | MS.gene053404:CDS | 40.0% | |
| AGGATGATTCTCTTTGCTAC+CGG | + | chr1.4:27586361-27586380 | MS.gene053404:CDS | 40.0% | |
| AGTTAATTGGTGGAAGCCAA+AGG | + | chr1.4:27586209-27586228 | MS.gene053404:CDS | 40.0% | |
| ATCCGCAAAAGCAGATAAGA+AGG | + | chr1.4:27585532-27585551 | MS.gene053404:CDS | 40.0% | |
| ATGAATGGTACATTGACCTG+AGG | + | chr1.4:27586293-27586312 | MS.gene053404:CDS | 40.0% | |
| CATCTCAAACTTCCTCATTC+TGG | + | chr1.4:27585122-27585141 | MS.gene053404:CDS | 40.0% | |
| CCAAAGGTTGGAGAGTTAAT+TGG | + | chr1.4:27586196-27586215 | MS.gene053404:CDS | 40.0% | |
| CCAATTAACTCTCCAACCTT+TGG | - | chr1.4:27586199-27586218 | None:intergenic | 40.0% | |
| GAATTCTCTGCTCGAAATGT+CGG | - | chr1.4:27585728-27585747 | None:intergenic | 40.0% | |
| GGAACTTGTGTAGTTGTTGA+TGG | + | chr1.4:27585098-27585117 | MS.gene053404:CDS | 40.0% | |
| GGATATTTAGCAGGATCAAC+AGG | - | chr1.4:27585203-27585222 | None:intergenic | 40.0% | |
| GTTAATTGGTGGAAGCCAAA+GGG | + | chr1.4:27586210-27586229 | MS.gene053404:CDS | 40.0% | |
| GTTACTTGACAACTGTCTTG+AGG | + | chr1.4:27585862-27585881 | MS.gene053404:CDS | 40.0% | |
| GTTCGATGTTGAAGCTGTTA+AGG | + | chr1.4:27585439-27585458 | MS.gene053404:CDS | 40.0% | |
| GTTGAAGCTGTTAAGGAGAA+GGG | + | chr1.4:27585446-27585465 | MS.gene053404:CDS | 40.0% | |
| TATGGAACAGTGAAACATGC+TGG | + | chr1.4:27586319-27586338 | MS.gene053404:CDS | 40.0% | |
| TATGGATGTTCTTGTGCCAA+AGG | + | chr1.4:27586180-27586199 | MS.gene053404:CDS | 40.0% | |
| TGCCTGTTAAGCCATATGAA+TGG | + | chr1.4:27586278-27586297 | MS.gene053404:CDS | 40.0% | |
| TGTTGAAGCTGTTAAGGAGA+AGG | + | chr1.4:27585445-27585464 | MS.gene053404:CDS | 40.0% | |
| TTAAGGAGAAGGGGATAAGA+AGG | + | chr1.4:27585456-27585475 | MS.gene053404:CDS | 40.0% | |
| TTGAAGCTGTTAAGGAGAAG+GGG | + | chr1.4:27585447-27585466 | MS.gene053404:CDS | 40.0% | |
| ! | ATCTCGAATATTTTCCAGGC+CGG | - | chr1.4:27586383-27586402 | None:intergenic | 40.0% |
| ! | CGGCAGATTATGGATTGAAT+CGG | - | chr1.4:27584897-27584916 | None:intergenic | 40.0% |
| ! | GCATTTGGCTGAATTTTGGA+TGG | + | chr1.4:27585760-27585779 | MS.gene053404:CDS | 40.0% |
| ! | GGCAGATTATGGATTGAATC+GGG | - | chr1.4:27584896-27584915 | None:intergenic | 40.0% |
| !! | CTCCTTCTTATCTGCTTTTG+CGG | - | chr1.4:27585537-27585556 | None:intergenic | 40.0% |
| !!! | GCCTTTTTGGAATTGAACGA+TGG | + | chr1.4:27585005-27585024 | MS.gene053404:CDS | 40.0% |
| AACCGGAAGAAAAGCCGATA+AGG | + | chr1.4:27584974-27584993 | MS.gene053404:CDS | 45.0% | |
| AAGTCTGCAAACGCGATTTC+AGG | - | chr1.4:27585791-27585810 | None:intergenic | 45.0% | |
| AATGGTACATTGACCTGAGG+CGG | + | chr1.4:27586296-27586315 | MS.gene053404:CDS | 45.0% | |
| ACACGATATCTGCTGTTGCT+CGG | + | chr1.4:27585288-27585307 | MS.gene053404:CDS | 45.0% | |
| ACCGGAAGAAAAGCCGATAA+GGG | + | chr1.4:27584975-27584994 | MS.gene053404:CDS | 45.0% | |
| AGAAAGCTAGAATCGGAGGA+TGG | + | chr1.4:27584946-27584965 | MS.gene053404:CDS | 45.0% | |
| AGCAACAGCAGATATCGTGT+TGG | - | chr1.4:27585288-27585307 | None:intergenic | 45.0% | |
| AGGAATATCGGGCTGAAGTT+TGG | - | chr1.4:27585582-27585601 | None:intergenic | 45.0% | |
| CAGAGAATTCTCACACTTCC+AGG | + | chr1.4:27585738-27585757 | MS.gene053404:CDS | 45.0% | |
| CCAAAATTCAGCCAAATGCC+TGG | - | chr1.4:27585759-27585778 | None:intergenic | 45.0% | |
| CTGGAAGAATCTGCGAAGAA+TGG | + | chr1.4:27585992-27586011 | MS.gene053404:CDS | 45.0% | |
| GAAAGCTAGAATCGGAGGAT+GGG | + | chr1.4:27584947-27584966 | MS.gene053404:CDS | 45.0% | |
| GATGTTCTTGTGCCAAAGGT+TGG | + | chr1.4:27586184-27586203 | MS.gene053404:CDS | 45.0% | |
| GCAGGCAAGAAAGCTAGAAT+CGG | + | chr1.4:27584939-27584958 | MS.gene053404:CDS | 45.0% | |
| GCTGAAGAGGTTGTTCATGT+TGG | + | chr1.4:27585176-27585195 | MS.gene053404:CDS | 45.0% | |
| GGTTCCCAAAGCTGAATTCT+CGG | + | chr1.4:27584863-27584882 | MS.gene053404:CDS | 45.0% | |
| TACAGAAGCCGTGGAAATAC+TGG | + | chr1.4:27585973-27585992 | MS.gene053404:CDS | 45.0% | |
| TATTCCTCGAAAGGACGGAA+AGG | + | chr1.4:27585595-27585614 | MS.gene053404:CDS | 45.0% | |
| TCATTGAGGCGCATGTAGAA+TGG | - | chr1.4:27586139-27586158 | None:intergenic | 45.0% | |
| TCCATAATCTGCCGTGAAGA+CGG | + | chr1.4:27584903-27584922 | MS.gene053404:CDS | 45.0% | |
| TCCGTCCTTTCGAGGAATAT+CGG | - | chr1.4:27585594-27585613 | None:intergenic | 45.0% | |
| TGAAATCGCGTTTGCAGACT+TGG | + | chr1.4:27585790-27585809 | MS.gene053404:CDS | 45.0% | |
| TTCTCACACTTCCAGGCATT+TGG | + | chr1.4:27585745-27585764 | MS.gene053404:CDS | 45.0% | |
| TTCTGTTTCGCTCCAGAATG+AGG | - | chr1.4:27585137-27585156 | None:intergenic | 45.0% | |
| ! | AAACATGCTGGATTCGGTCT+TGG | + | chr1.4:27586331-27586350 | MS.gene053404:CDS | 45.0% |
| ! | CCAGGCATTTGGCTGAATTT+TGG | + | chr1.4:27585756-27585775 | MS.gene053404:CDS | 45.0% |
| ! | GTCACGACTATTGATTGCGA+GGG | + | chr1.4:27585386-27585405 | MS.gene053404:CDS | 45.0% |
| ! | TCAAGAGGGAGTCTCCTTTT+AGG | - | chr1.4:27585230-27585249 | None:intergenic | 45.0% |
| ! | TGTCACGACTATTGATTGCG+AGG | + | chr1.4:27585385-27585404 | MS.gene053404:CDS | 45.0% |
| ! | TTATGGATTGAATCGGGACG+CGG | - | chr1.4:27584890-27584909 | None:intergenic | 45.0% |
| !! | AAAGGCGAAAGCACCCTTAT+CGG | - | chr1.4:27584991-27585010 | None:intergenic | 45.0% |
| !! | AGCAGATATCGTGTTGGTTC+TGG | - | chr1.4:27585282-27585301 | None:intergenic | 45.0% |
| !! | GATTCGGTCTTGGCTTTGAA+AGG | + | chr1.4:27586341-27586360 | MS.gene053404:CDS | 45.0% |
| !!! | ACCCTTATCGGCTTTTCTTC+CGG | - | chr1.4:27584979-27584998 | None:intergenic | 45.0% |
| !!! | TAAGGGTGCTTTCGCCTTTT+TGG | + | chr1.4:27584992-27585011 | MS.gene053404:CDS | 45.0% |
| AACTTGAAGGTTACCGGCAC+AGG | - | chr1.4:27585033-27585052 | None:intergenic | 50.0% | |
| AATCGCGTTTGCAGACTTGG+AGG | + | chr1.4:27585793-27585812 | MS.gene053404:CDS | 50.0% | |
| AATTGGTGGAAGCCAAAGGG+AGG | + | chr1.4:27586213-27586232 | MS.gene053404:CDS | 50.0% | |
| AGAGGGTTACCGTGGATAAC+TGG | - | chr1.4:27584833-27584852 | None:intergenic | 50.0% | |
| ATAATCTGCCGTGAAGACGG+CGG | + | chr1.4:27584906-27584925 | MS.gene053404:CDS | 50.0% | |
| ATCGGAGGATGGGTGAAAAC+CGG | + | chr1.4:27584957-27584976 | MS.gene053404:CDS | 50.0% | |
| ATTCCCTTCCCACGATATCC+TGG | + | chr1.4:27586406-27586425 | MS.gene053404:CDS | 50.0% | |
| CAATGACGACCTAGAGACAG+TGG | + | chr1.4:27586153-27586172 | MS.gene053404:CDS | 50.0% | |
| CATCATAACGCTCCTCCCTT+TGG | - | chr1.4:27586228-27586247 | None:intergenic | 50.0% | |
| CCCGATATTCCTCGAAAGGA+CGG | + | chr1.4:27585590-27585609 | MS.gene053404:CDS | 50.0% | |
| CCGTCCTTTCGAGGAATATC+GGG | - | chr1.4:27585593-27585612 | None:intergenic | 50.0% | |
| CGGTCCGAGAATTCAGCTTT+GGG | - | chr1.4:27584870-27584889 | None:intergenic | 50.0% | |
| CTGTCTCTAGGTCGTCATTG+AGG | - | chr1.4:27586153-27586172 | None:intergenic | 50.0% | |
| GGATGATATGAAGTGCGCTG+AGG | + | chr1.4:27585814-27585833 | MS.gene053404:CDS | 50.0% | |
| GGCAAGAAAGCTAGAATCGG+AGG | + | chr1.4:27584942-27584961 | MS.gene053404:CDS | 50.0% | |
| GGTTACCGTGGATAACTGGT+CGG | - | chr1.4:27584829-27584848 | None:intergenic | 50.0% | |
| TACATTGACCTGAGGCGGTA+TGG | + | chr1.4:27586301-27586320 | MS.gene053404:CDS | 50.0% | |
| TCAGCCCGATATTCCTCGAA+AGG | + | chr1.4:27585586-27585605 | MS.gene053404:CDS | 50.0% | |
| TCTACCTTTCCGTCCTTTCG+AGG | - | chr1.4:27585602-27585621 | None:intergenic | 50.0% | |
| TGTAAGTCGAATGAAGGGGG+TGG | - | chr1.4:27585951-27585970 | None:intergenic | 50.0% | |
| TTGAACGATGGAACCTGTGC+CGG | + | chr1.4:27585017-27585036 | MS.gene053404:CDS | 50.0% | |
| ! | ACTATTGATTGCGAGGGTGC+TGG | + | chr1.4:27585392-27585411 | MS.gene053404:CDS | 50.0% |
| ! | GAAGGAGATTAGTGCTGCTG+AGG | + | chr1.4:27585474-27585493 | MS.gene053404:CDS | 50.0% |
| ! | GAAGGAGATTAGTGCTGCTG+TGG | + | chr1.4:27585474-27585493 | MS.gene053404:CDS | 50.0% |
| ! | GGGAGTCTCCTTTTAGGCAA+AGG | - | chr1.4:27585224-27585243 | None:intergenic | 50.0% |
| !! | TTCAGCTTTGGGAACCTCGT+CGG | - | chr1.4:27584859-27584878 | None:intergenic | 50.0% |
| AACCTGATCCGCCGTCTTCA+CGG | - | chr1.4:27584917-27584936 | None:intergenic | 55.0% | |
| AAGTCGAATGAAGGGGGTGG+AGG | - | chr1.4:27585948-27585967 | None:intergenic | 55.0% | |
| ACCGTCCGACCAGTTATCCA+CGG | + | chr1.4:27584821-27584840 | MS.gene053404:CDS | 55.0% | |
| ACCGTGGATAACTGGTCGGA+CGG | - | chr1.4:27584825-27584844 | None:intergenic | 55.0% | |
| CCATAGCAGCCACTGTCTCT+AGG | - | chr1.4:27586165-27586184 | None:intergenic | 55.0% | |
| CCTAGAGACAGTGGCTGCTA+TGG | + | chr1.4:27586162-27586181 | MS.gene053404:CDS | 55.0% | |
| CTGCCAGGATATCGTGGGAA+GGG | - | chr1.4:27586412-27586431 | None:intergenic | 55.0% | |
| CTGCTCTGCCAGGATATCGT+GGG | - | chr1.4:27586417-27586436 | None:intergenic | 55.0% | |
| GATTCTCTTTGCTACCGGCC+TGG | + | chr1.4:27586366-27586385 | MS.gene053404:CDS | 55.0% | |
| GCCGTCTTCACGGCAGATTA+TGG | - | chr1.4:27584907-27584926 | None:intergenic | 55.0% | |
| GCGGTCCGAGAATTCAGCTT+TGG | - | chr1.4:27584871-27584890 | None:intergenic | 55.0% | |
| TCACTGTTCCATACCGCCTC+AGG | - | chr1.4:27586312-27586331 | None:intergenic | 55.0% | |
| TCTGCCAGGATATCGTGGGA+AGG | - | chr1.4:27586413-27586432 | None:intergenic | 55.0% | |
| TCTGCTCTGCCAGGATATCG+TGG | - | chr1.4:27586418-27586437 | None:intergenic | 55.0% | |
| !! | ATTGCGAGGGTGCTGGTGAA+AGG | + | chr1.4:27585399-27585418 | MS.gene053404:CDS | 55.0% |
| GACGGCGGATCAGGTTTAGC+AGG | + | chr1.4:27584921-27584940 | MS.gene053404:CDS | 60.0% | |
| GATCGAGCTTCGCGCTGAAG+AGG | + | chr1.4:27585163-27585182 | MS.gene053404:CDS | 60.0% | |
| GTGGATAACTGGTCGGACGG+TGG | - | chr1.4:27584822-27584841 | None:intergenic | 60.0% | |
| !! | AGCTTTGGGAACCTCGTCGG+AGG | - | chr1.4:27584856-27584875 | None:intergenic | 60.0% |
| GGGAACCTCGTCGGAGGAGA+GGG | - | chr1.4:27584850-27584869 | None:intergenic | 65.0% | |
| GGTAACCCTCTCCTCCGACG+AGG | + | chr1.4:27584842-27584861 | MS.gene053404:CDS | 65.0% | |
| GTCGGAGGAGAGGGTTACCG+TGG | - | chr1.4:27584841-27584860 | None:intergenic | 65.0% | |
| TGCCGTGAAGACGGCGGATC+AGG | + | chr1.4:27584912-27584931 | MS.gene053404:CDS | 65.0% | |
| TGGGAACCTCGTCGGAGGAG+AGG | - | chr1.4:27584851-27584870 | None:intergenic | 65.0% | |
| ! | GGTCGGACGGTGGTGATGAG+AGG | - | chr1.4:27584812-27584831 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 27584801 | 27586444 | 27584801 | ID=MS.gene053404 |
| chr1.4 | mRNA | 27584801 | 27586444 | 27584801 | ID=MS.gene053404.t1;Parent=MS.gene053404 |
| chr1.4 | exon | 27584801 | 27586444 | 27584801 | ID=MS.gene053404.t1.exon1;Parent=MS.gene053404.t1 |
| chr1.4 | CDS | 27584801 | 27586444 | 27584801 | ID=cds.MS.gene053404.t1;Parent=MS.gene053404.t1 |
| Gene Sequence |
| Protein sequence |
