Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054434.t1 | RHN49252.1 | 96.1 | 304 | 12 | 0 | 1 | 304 | 46 | 349 | 1.60E-175 | 625.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054434.t1 | I6YGS0 | 34.2 | 310 | 186 | 6 | 1 | 301 | 16 | 316 | 2.4e-50 | 200.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054434.t1 | A2Q324 | 96.1 | 304 | 12 | 0 | 1 | 304 | 16 | 319 | 1.2e-175 | 625.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054434 | MS.gene054445 | 0.957361 | 3.27E-115 | -1.69E-46 |
| MS.gene054434 | MS.gene054446 | 0.960753 | 6.49E-119 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77823 | MS.gene054434 | PPI |
| MS.gene07001 | MS.gene054434 | PPI |
| MS.gene071504 | MS.gene054434 | PPI |
| MS.gene012063 | MS.gene054434 | PPI |
| MS.gene071502 | MS.gene054434 | PPI |
| MS.gene066360 | MS.gene054434 | PPI |
| MS.gene89620 | MS.gene054434 | PPI |
| MS.gene066361 | MS.gene054434 | PPI |
| MS.gene035369 | MS.gene054434 | PPI |
| MS.gene071500 | MS.gene054434 | PPI |
| MS.gene76453 | MS.gene054434 | PPI |
| MS.gene025707 | MS.gene054434 | PPI |
| MS.gene035373 | MS.gene054434 | PPI |
| MS.gene22955 | MS.gene054434 | PPI |
| MS.gene035371 | MS.gene054434 | PPI |
| MS.gene035367 | MS.gene054434 | PPI |
| MS.gene041604 | MS.gene054434 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054434.t1 | MTR_7g113050 | 96.053 | 304 | 12 | 0 | 1 | 304 | 16 | 319 | 0.0 | 616 |
| MS.gene054434.t1 | MTR_7g113030 | 94.408 | 304 | 17 | 0 | 1 | 304 | 16 | 319 | 0.0 | 606 |
| MS.gene054434.t1 | MTR_7g112615 | 92.763 | 304 | 22 | 0 | 1 | 304 | 16 | 319 | 0.0 | 595 |
| MS.gene054434.t1 | MTR_7g112620 | 90.789 | 304 | 28 | 0 | 1 | 304 | 16 | 319 | 0.0 | 586 |
| MS.gene054434.t1 | MTR_7g113020 | 87.500 | 304 | 38 | 0 | 1 | 304 | 16 | 319 | 0.0 | 571 |
| MS.gene054434.t1 | MTR_7g112960 | 75.490 | 306 | 71 | 2 | 1 | 304 | 16 | 319 | 7.41e-177 | 491 |
| MS.gene054434.t1 | MTR_7g112963 | 75.817 | 306 | 70 | 2 | 1 | 304 | 16 | 319 | 1.69e-176 | 490 |
| MS.gene054434.t1 | MTR_4g005160 | 72.727 | 308 | 79 | 3 | 1 | 304 | 16 | 322 | 1.00e-173 | 483 |
| MS.gene054434.t1 | MTR_7g112970 | 74.013 | 304 | 76 | 2 | 1 | 304 | 16 | 316 | 9.58e-173 | 481 |
| MS.gene054434.t1 | MTR_7g113050 | 95.067 | 223 | 11 | 0 | 1 | 223 | 16 | 238 | 5.06e-162 | 451 |
| MS.gene054434.t1 | MTR_7g112615 | 92.825 | 223 | 16 | 0 | 1 | 223 | 16 | 238 | 9.73e-158 | 440 |
| MS.gene054434.t1 | MTR_7g113010 | 69.776 | 268 | 77 | 2 | 1 | 266 | 16 | 281 | 2.28e-139 | 406 |
| MS.gene054434.t1 | MTR_4g120240 | 59.804 | 306 | 119 | 3 | 1 | 304 | 52 | 355 | 3.75e-136 | 389 |
| MS.gene054434.t1 | MTR_7g108825 | 61.184 | 304 | 116 | 2 | 1 | 304 | 16 | 317 | 1.21e-135 | 387 |
| MS.gene054434.t1 | MTR_8g076680 | 49.342 | 304 | 150 | 3 | 1 | 304 | 18 | 317 | 5.44e-103 | 304 |
| MS.gene054434.t1 | MTR_7g112615 | 94.444 | 144 | 8 | 0 | 1 | 144 | 16 | 159 | 8.52e-99 | 288 |
| MS.gene054434.t1 | MTR_7g112910 | 59.438 | 249 | 46 | 5 | 57 | 304 | 1 | 195 | 1.21e-93 | 276 |
| MS.gene054434.t1 | MTR_7g108825 | 60.090 | 223 | 87 | 2 | 1 | 223 | 16 | 236 | 1.12e-92 | 275 |
| MS.gene054434.t1 | MTR_1g083480 | 77.778 | 144 | 28 | 2 | 1 | 141 | 16 | 158 | 3.15e-79 | 238 |
| MS.gene054434.t1 | MTR_8g076680 | 51.121 | 223 | 107 | 2 | 1 | 223 | 18 | 238 | 1.71e-77 | 236 |
| MS.gene054434.t1 | MTR_3g024250 | 84.906 | 106 | 16 | 0 | 32 | 137 | 2 | 107 | 3.84e-62 | 193 |
| MS.gene054434.t1 | MTR_2g090240 | 35.948 | 306 | 182 | 6 | 1 | 303 | 16 | 310 | 4.98e-60 | 194 |
| MS.gene054434.t1 | MTR_4g089060 | 37.582 | 306 | 176 | 6 | 1 | 303 | 16 | 309 | 8.61e-60 | 193 |
| MS.gene054434.t1 | MTR_4g089040 | 37.582 | 306 | 176 | 6 | 1 | 303 | 16 | 309 | 4.10e-59 | 192 |
| MS.gene054434.t1 | MTR_2g090245 | 35.621 | 306 | 183 | 7 | 1 | 303 | 16 | 310 | 4.82e-58 | 189 |
| MS.gene054434.t1 | MTR_4g089060 | 34.835 | 333 | 175 | 7 | 1 | 303 | 16 | 336 | 1.10e-54 | 181 |
| MS.gene054434.t1 | MTR_4g089060 | 39.908 | 218 | 122 | 3 | 1 | 216 | 16 | 226 | 1.64e-48 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054434.t1 | AT3G05600 | 60.194 | 309 | 118 | 4 | 1 | 304 | 16 | 324 | 1.72e-141 | 402 |
| MS.gene054434.t1 | AT4G02340 | 58.497 | 306 | 120 | 4 | 1 | 304 | 16 | 316 | 3.31e-133 | 381 |
| MS.gene054434.t1 | AT2G26740 | 60.968 | 310 | 114 | 4 | 1 | 304 | 13 | 321 | 1.18e-125 | 362 |
| MS.gene054434.t1 | AT2G26750 | 58.900 | 309 | 121 | 4 | 1 | 304 | 13 | 320 | 1.96e-120 | 348 |
| MS.gene054434.t1 | AT4G15960 | 54.194 | 310 | 135 | 3 | 1 | 304 | 66 | 374 | 5.09e-120 | 349 |
| MS.gene054434.t1 | AT4G15955 | 50.794 | 315 | 117 | 4 | 1 | 304 | 17 | 304 | 9.33e-107 | 313 |
| MS.gene054434.t1 | AT3G05600 | 60.965 | 228 | 84 | 4 | 1 | 223 | 16 | 243 | 3.83e-101 | 296 |
| MS.gene054434.t1 | AT3G51000 | 48.408 | 314 | 141 | 6 | 1 | 304 | 17 | 319 | 4.92e-101 | 299 |
| MS.gene054434.t1 | AT4G15955 | 60.123 | 163 | 55 | 2 | 1 | 153 | 17 | 179 | 6.03e-67 | 207 |
| MS.gene054434.t1 | AT4G15955 | 61.039 | 154 | 50 | 2 | 1 | 144 | 17 | 170 | 4.17e-63 | 197 |
Find 86 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.4:+4117278 | None:intergenic |
| GGCATCAACGGTCTTGATTT+TGG | 0.153935 | 7.4:+4117223 | None:intergenic |
| GGTAAGGTGTCAGGAGTATC+TGG | 0.233107 | 7.4:+4116423 | None:intergenic |
| TTATTATATCTGTAGATTTC+AGG | 0.251191 | 7.4:-4117177 | MS.gene054434:intron |
| TTGGGGTTTCTACGCATTAA+TGG | 0.262210 | 7.4:+4117242 | None:intergenic |
| GAAATTCATTACAGGTGATT+TGG | 0.277422 | 7.4:-4115922 | MS.gene054434:CDS |
| TACTCTCCCTTGGGAAATAT+TGG | 0.280214 | 7.4:+4116462 | None:intergenic |
| CATTACAGGTGATTTGGATA+TGG | 0.296487 | 7.4:-4115916 | MS.gene054434:CDS |
| TGTTTCTAGTTGGTCATGAT+TGG | 0.334939 | 7.4:-4117337 | MS.gene054434:CDS |
| AGCTGATGGCACCATGGAAT+GGG | 0.338259 | 7.4:-4115965 | MS.gene054434:CDS |
| ATATTTCCCAAGGGAGAGTA+TGG | 0.351665 | 7.4:-4116459 | MS.gene054434:CDS |
| GTCTCCAAATTTGAGAAAAC+AGG | 0.355343 | 7.4:-4116366 | MS.gene054434:CDS |
| CAAGGAAGATGTGCCTAATC+TGG | 0.368261 | 7.4:-4115847 | MS.gene054434:CDS |
| ATCCTGACAACTCGGAAAAC+TGG | 0.375136 | 7.4:-4116489 | MS.gene054434:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.4:+4117521 | None:intergenic |
| GTTTCTAGTTGGTCATGATT+GGG | 0.390166 | 7.4:-4117336 | MS.gene054434:CDS |
| AGCCAAGAGGGTAAGGTGTC+AGG | 0.390169 | 7.4:+4116414 | None:intergenic |
| CATGATTGGGGTGCTATCAT+TGG | 0.391157 | 7.4:-4117323 | MS.gene054434:CDS |
| TTTGAGAAAACAGGCTTCAC+TGG | 0.397561 | 7.4:-4116357 | MS.gene054434:CDS |
| GTCCCTGTGAAATTCATTAC+AGG | 0.400010 | 7.4:-4115930 | MS.gene054434:CDS |
| ATCGCAGAAACCGGGCGAAA+TGG | 0.400152 | 7.4:-4116556 | MS.gene054434:intron |
| CGCCACCAGATTGCGGCTCT+CGG | 0.403229 | 7.4:-4117500 | MS.gene054434:CDS |
| GAAGAAGTGATTATTCAAAA+AGG | 0.403789 | 7.4:-4115825 | MS.gene054434:CDS |
| CTCCTGACACCTTACCCTCT+TGG | 0.407073 | 7.4:-4116416 | MS.gene054434:CDS |
| GATGCCATGCGAGCTGCTTA+TGG | 0.412049 | 7.4:-4117206 | MS.gene054434:CDS |
| TCACCATAGCCACGCAGATC+TGG | 0.413961 | 7.4:+4117452 | None:intergenic |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 7.4:-4115988 | MS.gene054434:intron |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.4:-4117548 | MS.gene054434:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.4:+4117279 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.4:-4117523 | MS.gene054434:CDS |
| CCCAAGGGAGAGTATGGAAC+TGG | 0.436868 | 7.4:-4116453 | MS.gene054434:CDS |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.4:+4117540 | None:intergenic |
| GAGCTGATGGCACCATGGAA+TGG | 0.461653 | 7.4:-4115966 | MS.gene054434:CDS |
| GAGAGCCGAGAGCCGCAATC+TGG | 0.462159 | 7.4:+4117495 | None:intergenic |
| ATAATCACTTCTTCCAGATT+AGG | 0.463079 | 7.4:+4115834 | None:intergenic |
| TCCAGTTCCATACTCTCCCT+TGG | 0.463729 | 7.4:+4116452 | None:intergenic |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.4:+4117548 | None:intergenic |
| GCTCCAGATCTGCGTGGCTA+TGG | 0.482806 | 7.4:-4117455 | MS.gene054434:CDS |
| TTCTGTAAGCCAAGAGGGTA+AGG | 0.483607 | 7.4:+4116407 | None:intergenic |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.4:-4117581 | MS.gene054434:CDS |
| ATCTGAGCTTCCATTTCGCC+CGG | 0.491141 | 7.4:+4116546 | None:intergenic |
| GTTGCACTTATAGATTTGCT+TGG | 0.491344 | 7.4:-4117371 | MS.gene054434:CDS |
| ATTGCGGCTCTCGGCTCTCT+CGG | 0.495623 | 7.4:-4117491 | MS.gene054434:CDS |
| TCACCTGTAATGAATTTCAC+AGG | 0.496543 | 7.4:+4115927 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.4:-4117532 | MS.gene054434:CDS |
| GTCGATCAAGTGTTTCTAGT+TGG | 0.504272 | 7.4:-4117347 | MS.gene054434:CDS |
| CCAGTTCCATACTCTCCCTT+GGG | 0.508775 | 7.4:+4116453 | None:intergenic |
| GGGCGAAATGGAAGCTCAGA+TGG | 0.525021 | 7.4:-4116544 | MS.gene054434:CDS |
| TTATCTTTATCGCAGAAACC+GGG | 0.536523 | 7.4:-4116564 | MS.gene054434:intron |
| ATGGAATGGGGTGAAAATCA+AGG | 0.540835 | 7.4:-4115952 | MS.gene054434:CDS |
| GAAGCTCAGATGGCTGAAGT+TGG | 0.542944 | 7.4:-4116534 | MS.gene054434:CDS |
| TCTCCCTTGGGAAATATTGG+AGG | 0.546141 | 7.4:+4116465 | None:intergenic |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.4:-4117572 | MS.gene054434:CDS |
| AGCCGAGAGCCGCAATCTGG+TGG | 0.549085 | 7.4:+4117498 | None:intergenic |
| AGCAGCTCGCATGGCATCAA+CGG | 0.552034 | 7.4:+4117211 | None:intergenic |
| GTGTAGCTACTAACTGAAGA+TGG | 0.564708 | 7.4:+4117419 | None:intergenic |
| TTTCTAGTTGGTCATGATTG+GGG | 0.567714 | 7.4:-4117335 | MS.gene054434:CDS |
| ATTGGGGTGCTATCATTGGT+TGG | 0.568173 | 7.4:-4117319 | MS.gene054434:CDS |
| TCTTCAGTTAGTAGCTACAC+AGG | 0.571639 | 7.4:-4117416 | MS.gene054434:CDS |
| ATCTCCATAAGCAGCTCGCA+TGG | 0.576208 | 7.4:+4117202 | None:intergenic |
| GAAGGAGTATATCCATGGTG+GGG | 0.578871 | 7.4:-4115874 | MS.gene054434:CDS |
| TGAAGGAGTATATCCATGGT+GGG | 0.583874 | 7.4:-4115875 | MS.gene054434:CDS |
| TGGTCCTCCAATATTTCCCA+AGG | 0.588717 | 7.4:-4116469 | MS.gene054434:CDS |
| GAATTCATCAAGAAGTTCTG+AGG | 0.589260 | 7.4:-4115747 | None:intergenic |
| TCGTCTTCTGTAAGCCAAGA+GGG | 0.590014 | 7.4:+4116402 | None:intergenic |
| TGGAACACTGAGACAAACAT+AGG | 0.590336 | 7.4:+4117262 | None:intergenic |
| CTCTTGGCGCCACCAGATTG+CGG | 0.594106 | 7.4:-4117507 | MS.gene054434:CDS |
| GCCACGCAGATCTGGAGCAA+CGG | 0.594783 | 7.4:+4117460 | None:intergenic |
| AAGGAGTATATCCATGGTGG+GGG | 0.600787 | 7.4:-4115873 | MS.gene054434:CDS |
| GTAAGGTGTCAGGAGTATCT+GGG | 0.606766 | 7.4:+4116424 | None:intergenic |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 7.4:-4115979 | MS.gene054434:intron |
| AACATGAAGGAGTATATCCA+TGG | 0.620148 | 7.4:-4115879 | MS.gene054434:CDS |
| TAACAATGAAGAAGCAGCAG+AGG | 0.620175 | 7.4:-4115790 | MS.gene054434:CDS |
| ATACTCCTTCATGTTTAGTG+AGG | 0.623538 | 7.4:+4115887 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.4:+4117534 | None:intergenic |
| GCTGATGGCACCATGGAATG+GGG | 0.628565 | 7.4:-4115964 | MS.gene054434:CDS |
| CACCTGTAATGAATTTCACA+GGG | 0.630986 | 7.4:+4115928 | None:intergenic |
| ATTTGGAGACAAAATAAGCA+AGG | 0.634682 | 7.4:+4116379 | None:intergenic |
| ATGAAGGAGTATATCCATGG+TGG | 0.640343 | 7.4:-4115876 | MS.gene054434:CDS |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7.4:-4115971 | MS.gene054434:CDS |
| GTACACCTCACTAAACATGA+AGG | 0.657206 | 7.4:-4115892 | MS.gene054434:CDS |
| GTCGTCTTCTGTAAGCCAAG+AGG | 0.663533 | 7.4:+4116401 | None:intergenic |
| GCCGTTGCTCCAGATCTGCG+TGG | 0.702325 | 7.4:-4117461 | MS.gene054434:CDS |
| GGTCCTCCAATATTTCCCAA+GGG | 0.706108 | 7.4:-4116468 | MS.gene054434:CDS |
| GCAGATCTGGAGCAACGGCG+CGG | 0.714874 | 7.4:+4117465 | None:intergenic |
| GCAAATCTATAAGTGCAACA+AGG | 0.718881 | 7.4:+4117375 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTGTTTTTTTTTTTTTTA+AGG | + | chr7.4:4116314-4116333 | None:intergenic | 10.0% |
| !!! | AATCATAATATTTTTTTTAG+GGG | - | chr7.4:4116472-4116491 | MS.gene054434:CDS | 10.0% |
| !!! | GAATCATAATATTTTTTTTA+GGG | - | chr7.4:4116471-4116490 | MS.gene054434:CDS | 10.0% |
| !!! | TGAATCATAATATTTTTTTT+AGG | - | chr7.4:4116470-4116489 | MS.gene054434:CDS | 10.0% |
| !! | AAAAAAAAAACACTTGATTA+AGG | - | chr7.4:4116319-4116338 | MS.gene054434:intron | 15.0% |
| !! | ATATAGAGATCTATAAAAAA+AGG | + | chr7.4:4116730-4116749 | None:intergenic | 15.0% |
| !!! | CCAATAATAGTTTTAAAAAA+TGG | + | chr7.4:4117213-4117232 | None:intergenic | 15.0% |
| !!! | CCATTTTTTAAAACTATTAT+TGG | - | chr7.4:4117210-4117229 | MS.gene054434:CDS | 15.0% |
| !! | AATATTATGATTCAACCATA+AGG | + | chr7.4:4116464-4116483 | None:intergenic | 20.0% |
| !! | GATTTCTTAAAGTAAATTAG+GGG | + | chr7.4:4116221-4116240 | None:intergenic | 20.0% |
| !! | GGATTTCTTAAAGTAAATTA+GGG | + | chr7.4:4116222-4116241 | None:intergenic | 20.0% |
| !! | TTATTATATCTGTAGATTTC+AGG | - | chr7.4:4116150-4116169 | MS.gene054434:intron | 20.0% |
| !!! | AAGAAATCCCTAATATTTTA+TGG | - | chr7.4:4116233-4116252 | MS.gene054434:intron | 20.0% |
| !!! | AGAAATCCCTAATATTTTAT+GGG | - | chr7.4:4116234-4116253 | MS.gene054434:intron | 20.0% |
| !!! | TATATGTTGACAATTCTTTT+TGG | - | chr7.4:4117068-4117087 | MS.gene054434:intron | 20.0% |
| ! | AACTTGTCCCATAAAATATT+AGG | + | chr7.4:4116244-4116263 | None:intergenic | 25.0% |
| ! | AATGCATCTTTCATTAGAAT+TGG | + | chr7.4:4117318-4117337 | None:intergenic | 25.0% |
| ! | ACTTGTCCCATAAAATATTA+GGG | + | chr7.4:4116243-4116262 | None:intergenic | 25.0% |
| ! | ATATTTGTGGAAAACAACAA+AGG | + | chr7.4:4117051-4117070 | None:intergenic | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | - | chr7.4:4117338-4117357 | MS.gene054434:CDS | 25.0% |
| ! | GAAGAAGTGATTATTCAAAA+AGG | - | chr7.4:4117502-4117521 | MS.gene054434:CDS | 25.0% |
| ! | GAATTGTCAACATATATTTG+TGG | + | chr7.4:4117064-4117083 | None:intergenic | 25.0% |
| ! | GGGATTTCTTAAAGTAAATT+AGG | + | chr7.4:4116223-4116242 | None:intergenic | 25.0% |
| ! | TGATTGAATATAACATGTGT+CGG | + | chr7.4:4117187-4117206 | None:intergenic | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | - | chr7.4:4117339-4117358 | MS.gene054434:CDS | 25.0% |
| AACAACACTCAACACAAAAT+TGG | + | chr7.4:4117258-4117277 | None:intergenic | 30.0% | |
| AATCAAAAGAGGAAACCTTA+TGG | - | chr7.4:4116446-4116465 | MS.gene054434:CDS | 30.0% | |
| AATCAAGTGTTAAACACACT+TGG | + | chr7.4:4116401-4116420 | None:intergenic | 30.0% | |
| AGTGATTATTCAAAAAGGAG+TGG | - | chr7.4:4117507-4117526 | MS.gene054434:CDS | 30.0% | |
| AGTTGAGTCTAAATCAAAAG+AGG | - | chr7.4:4116435-4116454 | MS.gene054434:CDS | 30.0% | |
| ATAATCACTTCTTCCAGATT+AGG | + | chr7.4:4117496-4117515 | None:intergenic | 30.0% | |
| ATAGATCTCTATATCATGAG+AGG | - | chr7.4:4116535-4116554 | MS.gene054434:CDS | 30.0% | |
| ATCAAGTGTTAAACACACTT+GGG | + | chr7.4:4116400-4116419 | None:intergenic | 30.0% | |
| ATCTATAAAAAAAGGCAACC+TGG | + | chr7.4:4116722-4116741 | None:intergenic | 30.0% | |
| ATTTGGAGACAAAATAAGCA+AGG | + | chr7.4:4116951-4116970 | None:intergenic | 30.0% | |
| CATACAATACACCAAATGAT+GGG | - | chr7.4:4116656-4116675 | MS.gene054434:intron | 30.0% | |
| GAAATTCATTACAGGTGATT+TGG | - | chr7.4:4117405-4117424 | MS.gene054434:CDS | 30.0% | |
| TGAAAAATATCCTGACAACT+CGG | - | chr7.4:4116830-4116849 | MS.gene054434:intron | 30.0% | |
| ! | TACACAGGTTTTCATATAGT+GGG | - | chr7.4:4115926-4115945 | MS.gene054434:CDS | 30.0% |
| ATACTCCTTCATGTTTAGTG+AGG | + | chr7.4:4117443-4117462 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | - | chr7.4:4115755-4115774 | MS.gene054434:CDS | 35.0% | |
| CACCTGTAATGAATTTCACA+GGG | + | chr7.4:4117402-4117421 | None:intergenic | 35.0% | |
| CAGAGAGAAAAGTAGAAAAG+TGG | + | chr7.4:4116195-4116214 | None:intergenic | 35.0% | |
| CTTATCTTTATCGCAGAAAC+CGG | - | chr7.4:4116762-4116781 | MS.gene054434:intron | 35.0% | |
| GCAAATCTATAAGTGCAACA+AGG | + | chr7.4:4115955-4115974 | None:intergenic | 35.0% | |
| GCATACAATACACCAAATGA+TGG | - | chr7.4:4116655-4116674 | MS.gene054434:intron | 35.0% | |
| GTCTCCAAATTTGAGAAAAC+AGG | - | chr7.4:4116961-4116980 | MS.gene054434:intron | 35.0% | |
| TATATCATGAGAGGTAACCT+TGG | - | chr7.4:4116544-4116563 | MS.gene054434:CDS | 35.0% | |
| TATCAACACATATCGAACAC+CGG | + | chr7.4:4117157-4117176 | None:intergenic | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | + | chr7.4:4117403-4117422 | None:intergenic | 35.0% | |
| TTATCTTTATCGCAGAAACC+GGG | - | chr7.4:4116763-4116782 | MS.gene054434:intron | 35.0% | |
| ! | AACATGAAGGAGTATATCCA+TGG | - | chr7.4:4117448-4117467 | MS.gene054434:CDS | 35.0% |
| ! | AATATAACATGTGTCGGTGT+CGG | + | chr7.4:4117181-4117200 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr7.4:4116052-4116071 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr7.4:4116051-4116070 | None:intergenic | 35.0% |
| ! | CATTACAGGTGATTTGGATA+TGG | - | chr7.4:4117411-4117430 | MS.gene054434:CDS | 35.0% |
| ! | CTACACAGGTTTTCATATAG+TGG | - | chr7.4:4115925-4115944 | MS.gene054434:CDS | 35.0% |
| ! | GAAGCCTGTTTTCTCAAATT+TGG | + | chr7.4:4116968-4116987 | None:intergenic | 35.0% |
| ! | GTTGCACTTATAGATTTGCT+TGG | - | chr7.4:4115956-4115975 | MS.gene054434:CDS | 35.0% |
| !! | GTTTCTAGTTGGTCATGATT+GGG | - | chr7.4:4115991-4116010 | MS.gene054434:intron | 35.0% |
| !! | TGTTTCTAGTTGGTCATGAT+TGG | - | chr7.4:4115990-4116009 | MS.gene054434:intron | 35.0% |
| !! | TTTCTAGTTGGTCATGATTG+GGG | - | chr7.4:4115992-4116011 | MS.gene054434:intron | 35.0% |
| AAAGCCTCTAGTGTGAAAAC+AGG | - | chr7.4:4116624-4116643 | MS.gene054434:intron | 40.0% | |
| AAGCCTCTAGTGTGAAAACA+GGG | - | chr7.4:4116625-4116644 | MS.gene054434:intron | 40.0% | |
| ATATTTCCCAAGGGAGAGTA+TGG | - | chr7.4:4116868-4116887 | MS.gene054434:intron | 40.0% | |
| ATCAACACATATCGAACACC+GGG | + | chr7.4:4117156-4117175 | None:intergenic | 40.0% | |
| ATGGAATGGGGTGAAAATCA+AGG | - | chr7.4:4117375-4117394 | MS.gene054434:CDS | 40.0% | |
| GTACACCTCACTAAACATGA+AGG | - | chr7.4:4117435-4117454 | MS.gene054434:CDS | 40.0% | |
| GTCCCTGTGAAATTCATTAC+AGG | - | chr7.4:4117397-4117416 | MS.gene054434:CDS | 40.0% | |
| GTGTAGCTACTAACTGAAGA+TGG | + | chr7.4:4115911-4115930 | None:intergenic | 40.0% | |
| TAACAATGAAGAAGCAGCAG+AGG | - | chr7.4:4117537-4117556 | MS.gene054434:CDS | 40.0% | |
| TACTCTCCCTTGGGAAATAT+TGG | + | chr7.4:4116868-4116887 | None:intergenic | 40.0% | |
| TCTTCAGTTAGTAGCTACAC+AGG | - | chr7.4:4115911-4115930 | MS.gene054434:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | + | chr7.4:4116068-4116087 | None:intergenic | 40.0% | |
| TTGGGGTTTCTACGCATTAA+TGG | + | chr7.4:4116088-4116107 | None:intergenic | 40.0% | |
| TTTCAGTTTGAAGACATGCC+CGG | - | chr7.4:4117135-4117154 | MS.gene054434:intron | 40.0% | |
| TTTGAGAAAACAGGCTTCAC+TGG | - | chr7.4:4116970-4116989 | MS.gene054434:intron | 40.0% | |
| ! | ATGAAGGAGTATATCCATGG+TGG | - | chr7.4:4117451-4117470 | MS.gene054434:CDS | 40.0% |
| ! | CATCAACGGTCTTGATTTTG+GGG | + | chr7.4:4116105-4116124 | None:intergenic | 40.0% |
| ! | CTCTTTTCATGTGCCAGTTT+CGG | + | chr7.4:4116373-4116392 | None:intergenic | 40.0% |
| ! | GCATCAACGGTCTTGATTTT+GGG | + | chr7.4:4116106-4116125 | None:intergenic | 40.0% |
| ! | TGAAGGAGTATATCCATGGT+GGG | - | chr7.4:4117452-4117471 | MS.gene054434:CDS | 40.0% |
| ! | TTACCCTGTTTTCACACTAG+AGG | + | chr7.4:4116631-4116650 | None:intergenic | 40.0% |
| ! | TTGATTTTCACCCCATTCCA+TGG | + | chr7.4:4117376-4117395 | None:intergenic | 40.0% |
| !! | GTCGATCAAGTGTTTCTAGT+TGG | - | chr7.4:4115980-4115999 | MS.gene054434:intron | 40.0% |
| ATCCTGACAACTCGGAAAAC+TGG | - | chr7.4:4116838-4116857 | MS.gene054434:intron | 45.0% | |
| CAAGGAAGATGTGCCTAATC+TGG | - | chr7.4:4117480-4117499 | MS.gene054434:CDS | 45.0% | |
| CATACGAAAGGTCTGGAAAG+GGG | + | chr7.4:4116683-4116702 | None:intergenic | 45.0% | |
| CGAAACTGGCACATGAAAAG+AGG | - | chr7.4:4116371-4116390 | MS.gene054434:CDS | 45.0% | |
| CTTTCCAGACCTTTCGTATG+CGG | - | chr7.4:4116683-4116702 | MS.gene054434:intron | 45.0% | |
| GCATACGAAAGGTCTGGAAA+GGG | + | chr7.4:4116684-4116703 | None:intergenic | 45.0% | |
| GGTCCTCCAATATTTCCCAA+GGG | - | chr7.4:4116859-4116878 | MS.gene054434:intron | 45.0% | |
| GTTGCAGTCATGTGACTGAA+AGG | - | chr7.4:4116580-4116599 | MS.gene054434:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+TGG | - | chr7.4:4116587-4116606 | MS.gene054434:intron | 45.0% | |
| TCGTCTTCTGTAAGCCAAGA+GGG | + | chr7.4:4116928-4116947 | None:intergenic | 45.0% | |
| TCTCCCTTGGGAAATATTGG+AGG | + | chr7.4:4116865-4116884 | None:intergenic | 45.0% | |
| TGGTCCTCCAATATTTCCCA+AGG | - | chr7.4:4116858-4116877 | MS.gene054434:intron | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | - | chr7.4:4115804-4115823 | MS.gene054434:CDS | 45.0% | |
| TTCTGTAAGCCAAGAGGGTA+AGG | + | chr7.4:4116923-4116942 | None:intergenic | 45.0% | |
| TTGAACTAGCTCACCGAAAC+TGG | - | chr7.4:4116357-4116376 | MS.gene054434:CDS | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | - | chr7.4:4117348-4117367 | MS.gene054434:CDS | 45.0% | |
| TTTCCAGACCTTTCGTATGC+GGG | - | chr7.4:4116684-4116703 | MS.gene054434:intron | 45.0% | |
| ! | AAGGAGTATATCCATGGTGG+GGG | - | chr7.4:4117454-4117473 | MS.gene054434:CDS | 45.0% |
| ! | ATTGGGGTGCTATCATTGGT+TGG | - | chr7.4:4116008-4116027 | MS.gene054434:intron | 45.0% |
| ! | CATGATTGGGGTGCTATCAT+TGG | - | chr7.4:4116004-4116023 | MS.gene054434:intron | 45.0% |
| ! | GAAGGAGTATATCCATGGTG+GGG | - | chr7.4:4117453-4117472 | MS.gene054434:CDS | 45.0% |
| ! | GGCATCAACGGTCTTGATTT+TGG | + | chr7.4:4116107-4116126 | None:intergenic | 45.0% |
| !! | GTAAGGTGTCAGGAGTATCT+GGG | + | chr7.4:4116906-4116925 | None:intergenic | 45.0% |
| !! | TCACACTAGAGGCTTTTTCC+AGG | + | chr7.4:4116620-4116639 | None:intergenic | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | + | chr7.4:4115796-4115815 | None:intergenic | 50.0% | |
| AGCTGATGGCACCATGGAAT+GGG | - | chr7.4:4117362-4117381 | MS.gene054434:CDS | 50.0% | |
| ATCTCCATAAGCAGCTCGCA+TGG | + | chr7.4:4116128-4116147 | None:intergenic | 50.0% | |
| ATCTGAGCTTCCATTTCGCC+CGG | + | chr7.4:4116784-4116803 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr7.4:4116564-4116583 | None:intergenic | 50.0% | |
| CCAGTTCCATACTCTCCCTT+GGG | + | chr7.4:4116877-4116896 | None:intergenic | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | - | chr7.4:4115779-4115798 | MS.gene054434:CDS | 50.0% | |
| CGCATACGAAAGGTCTGGAA+AGG | + | chr7.4:4116685-4116704 | None:intergenic | 50.0% | |
| CTAAAGCTCCCGCATACGAA+AGG | + | chr7.4:4116695-4116714 | None:intergenic | 50.0% | |
| GAAGCTCAGATGGCTGAAGT+TGG | - | chr7.4:4116793-4116812 | MS.gene054434:intron | 50.0% | |
| GTCGTCTTCTGTAAGCCAAG+AGG | + | chr7.4:4116929-4116948 | None:intergenic | 50.0% | |
| TCCAGTTCCATACTCTCCCT+TGG | + | chr7.4:4116878-4116897 | None:intergenic | 50.0% | |
| TGGAAAGGGGTCCCATCATT+TGG | + | chr7.4:4116670-4116689 | None:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | - | chr7.4:4115795-4115814 | MS.gene054434:CDS | 50.0% | |
| ! | GACCAGTTTTCCGAGTTGTC+AGG | + | chr7.4:4116843-4116862 | None:intergenic | 50.0% |
| ! | TATCCATGGTGGGGGATTCA+AGG | - | chr7.4:4117462-4117481 | MS.gene054434:CDS | 50.0% |
| !! | AAGGTCACTGGTTCAAGTCC+TGG | - | chr7.4:4116599-4116618 | MS.gene054434:intron | 50.0% |
| !! | GGTAAGGTGTCAGGAGTATC+TGG | + | chr7.4:4116907-4116926 | None:intergenic | 50.0% |
| AGAGGTAACCTTGGCGCAAC+TGG | - | chr7.4:4116553-4116572 | MS.gene054434:intron | 55.0% | |
| AGCAGCTCGCATGGCATCAA+CGG | + | chr7.4:4116119-4116138 | None:intergenic | 55.0% | |
| ATCGCAGAAACCGGGCGAAA+TGG | - | chr7.4:4116771-4116790 | MS.gene054434:intron | 55.0% | |
| ATTGGGAGCTGATGGCACCA+TGG | - | chr7.4:4117356-4117375 | MS.gene054434:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | + | chr7.4:4115790-4115809 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | + | chr7.4:4115782-4115801 | None:intergenic | 55.0% | |
| CTCCTGACACCTTACCCTCT+TGG | - | chr7.4:4116911-4116930 | MS.gene054434:intron | 55.0% | |
| CTTCCTTGAATCCCCCACCA+TGG | + | chr7.4:4117468-4117487 | None:intergenic | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | - | chr7.4:4117361-4117380 | MS.gene054434:CDS | 55.0% | |
| GATGCCATGCGAGCTGCTTA+TGG | - | chr7.4:4116121-4116140 | MS.gene054434:intron | 55.0% | |
| GCTGATGGCACCATGGAATG+GGG | - | chr7.4:4117363-4117382 | MS.gene054434:CDS | 55.0% | |
| GGGCGAAATGGAAGCTCAGA+TGG | - | chr7.4:4116783-4116802 | MS.gene054434:intron | 55.0% | |
| TCACCATAGCCACGCAGATC+TGG | + | chr7.4:4115878-4115897 | None:intergenic | 55.0% | |
| ! | AGCCAAGAGGGTAAGGTGTC+AGG | + | chr7.4:4116916-4116935 | None:intergenic | 55.0% |
| ! | CCCAAGGGAGAGTATGGAAC+TGG | - | chr7.4:4116874-4116893 | MS.gene054434:intron | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | + | chr7.4:4115809-4115828 | None:intergenic | 55.0% |
| ATTGCGGCTCTCGGCTCTCT+CGG | - | chr7.4:4115836-4115855 | MS.gene054434:CDS | 60.0% | |
| CTCTTGGCGCCACCAGATTG+CGG | - | chr7.4:4115820-4115839 | MS.gene054434:CDS | 60.0% | |
| GCTCCAGATCTGCGTGGCTA+TGG | - | chr7.4:4115872-4115891 | MS.gene054434:CDS | 60.0% | |
| GCTCCCGCATACGAAAGGTC+TGG | + | chr7.4:4116690-4116709 | None:intergenic | 60.0% | |
| ! | GCCACGCAGATCTGGAGCAA+CGG | + | chr7.4:4115870-4115889 | None:intergenic | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+AGG | - | chr7.4:4116701-4116720 | MS.gene054434:intron | 60.0% |
| AGCCGAGAGCCGCAATCTGG+TGG | + | chr7.4:4115832-4115851 | None:intergenic | 65.0% | |
| CGCCACCAGATTGCGGCTCT+CGG | - | chr7.4:4115827-4115846 | MS.gene054434:CDS | 65.0% | |
| GAGAGCCGAGAGCCGCAATC+TGG | + | chr7.4:4115835-4115854 | None:intergenic | 65.0% | |
| GCCGTTGCTCCAGATCTGCG+TGG | - | chr7.4:4115866-4115885 | MS.gene054434:CDS | 65.0% | |
| ! | GCAGATCTGGAGCAACGGCG+CGG | + | chr7.4:4115865-4115884 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4115749 | 4117600 | 4115749 | ID=MS.gene054434 |
| chr7.4 | mRNA | 4115749 | 4117600 | 4115749 | ID=MS.gene054434.t1;Parent=MS.gene054434 |
| chr7.4 | exon | 4117178 | 4117600 | 4117178 | ID=MS.gene054434.t1.exon1;Parent=MS.gene054434.t1 |
| chr7.4 | CDS | 4117178 | 4117600 | 4117178 | ID=cds.MS.gene054434.t1;Parent=MS.gene054434.t1 |
| chr7.4 | exon | 4116327 | 4116571 | 4116327 | ID=MS.gene054434.t1.exon2;Parent=MS.gene054434.t1 |
| chr7.4 | CDS | 4116327 | 4116571 | 4116327 | ID=cds.MS.gene054434.t1;Parent=MS.gene054434.t1 |
| chr7.4 | exon | 4115749 | 4115995 | 4115749 | ID=MS.gene054434.t1.exon3;Parent=MS.gene054434.t1 |
| chr7.4 | CDS | 4115749 | 4115995 | 4115749 | ID=cds.MS.gene054434.t1;Parent=MS.gene054434.t1 |
| Gene Sequence |
| Protein sequence |
