Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054446.t1 | RHN49252.1 | 96.1 | 304 | 12 | 0 | 1 | 304 | 46 | 349 | 1.60E-175 | 625.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054446.t1 | I6YGS0 | 34.2 | 310 | 186 | 6 | 1 | 301 | 16 | 316 | 2.4e-50 | 200.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054446.t1 | A2Q324 | 96.1 | 304 | 12 | 0 | 1 | 304 | 16 | 319 | 1.2e-175 | 625.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054434 | MS.gene054446 | 0.960753 | 6.49E-119 | -1.69E-46 |
| MS.gene054445 | MS.gene054446 | 0.993462 | 6.67E-200 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054446 | MS.gene22955 | PPI |
| MS.gene76453 | MS.gene054446 | PPI |
| MS.gene025707 | MS.gene054446 | PPI |
| MS.gene035373 | MS.gene054446 | PPI |
| MS.gene054446 | MS.gene07001 | PPI |
| MS.gene035367 | MS.gene054446 | PPI |
| MS.gene054446 | MS.gene035371 | PPI |
| MS.gene77823 | MS.gene054446 | PPI |
| MS.gene054446 | MS.gene066361 | PPI |
| MS.gene071504 | MS.gene054446 | PPI |
| MS.gene012063 | MS.gene054446 | PPI |
| MS.gene071502 | MS.gene054446 | PPI |
| MS.gene066360 | MS.gene054446 | PPI |
| MS.gene054446 | MS.gene071500 | PPI |
| MS.gene89620 | MS.gene054446 | PPI |
| MS.gene054446 | MS.gene041604 | PPI |
| MS.gene035369 | MS.gene054446 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054446.t1 | MTR_7g113050 | 96.053 | 304 | 12 | 0 | 1 | 304 | 16 | 319 | 0.0 | 616 |
| MS.gene054446.t1 | MTR_7g113030 | 94.408 | 304 | 17 | 0 | 1 | 304 | 16 | 319 | 0.0 | 606 |
| MS.gene054446.t1 | MTR_7g112615 | 92.763 | 304 | 22 | 0 | 1 | 304 | 16 | 319 | 0.0 | 595 |
| MS.gene054446.t1 | MTR_7g112620 | 90.789 | 304 | 28 | 0 | 1 | 304 | 16 | 319 | 0.0 | 586 |
| MS.gene054446.t1 | MTR_7g113020 | 87.500 | 304 | 38 | 0 | 1 | 304 | 16 | 319 | 0.0 | 571 |
| MS.gene054446.t1 | MTR_7g112960 | 75.490 | 306 | 71 | 2 | 1 | 304 | 16 | 319 | 7.41e-177 | 491 |
| MS.gene054446.t1 | MTR_7g112963 | 75.817 | 306 | 70 | 2 | 1 | 304 | 16 | 319 | 1.69e-176 | 490 |
| MS.gene054446.t1 | MTR_4g005160 | 72.727 | 308 | 79 | 3 | 1 | 304 | 16 | 322 | 1.00e-173 | 483 |
| MS.gene054446.t1 | MTR_7g112970 | 74.013 | 304 | 76 | 2 | 1 | 304 | 16 | 316 | 9.58e-173 | 481 |
| MS.gene054446.t1 | MTR_7g113050 | 95.067 | 223 | 11 | 0 | 1 | 223 | 16 | 238 | 5.06e-162 | 451 |
| MS.gene054446.t1 | MTR_7g112615 | 92.825 | 223 | 16 | 0 | 1 | 223 | 16 | 238 | 9.73e-158 | 440 |
| MS.gene054446.t1 | MTR_7g113010 | 69.776 | 268 | 77 | 2 | 1 | 266 | 16 | 281 | 2.28e-139 | 406 |
| MS.gene054446.t1 | MTR_4g120240 | 59.804 | 306 | 119 | 3 | 1 | 304 | 52 | 355 | 3.75e-136 | 389 |
| MS.gene054446.t1 | MTR_7g108825 | 61.184 | 304 | 116 | 2 | 1 | 304 | 16 | 317 | 1.21e-135 | 387 |
| MS.gene054446.t1 | MTR_8g076680 | 49.342 | 304 | 150 | 3 | 1 | 304 | 18 | 317 | 5.44e-103 | 304 |
| MS.gene054446.t1 | MTR_7g112615 | 94.444 | 144 | 8 | 0 | 1 | 144 | 16 | 159 | 8.52e-99 | 288 |
| MS.gene054446.t1 | MTR_7g112910 | 59.438 | 249 | 46 | 5 | 57 | 304 | 1 | 195 | 1.21e-93 | 276 |
| MS.gene054446.t1 | MTR_7g108825 | 60.090 | 223 | 87 | 2 | 1 | 223 | 16 | 236 | 1.12e-92 | 275 |
| MS.gene054446.t1 | MTR_1g083480 | 77.778 | 144 | 28 | 2 | 1 | 141 | 16 | 158 | 3.15e-79 | 238 |
| MS.gene054446.t1 | MTR_8g076680 | 51.121 | 223 | 107 | 2 | 1 | 223 | 18 | 238 | 1.71e-77 | 236 |
| MS.gene054446.t1 | MTR_3g024250 | 84.906 | 106 | 16 | 0 | 32 | 137 | 2 | 107 | 3.84e-62 | 193 |
| MS.gene054446.t1 | MTR_2g090240 | 35.948 | 306 | 182 | 6 | 1 | 303 | 16 | 310 | 4.98e-60 | 194 |
| MS.gene054446.t1 | MTR_4g089060 | 37.582 | 306 | 176 | 6 | 1 | 303 | 16 | 309 | 8.61e-60 | 193 |
| MS.gene054446.t1 | MTR_4g089040 | 37.582 | 306 | 176 | 6 | 1 | 303 | 16 | 309 | 4.10e-59 | 192 |
| MS.gene054446.t1 | MTR_2g090245 | 35.621 | 306 | 183 | 7 | 1 | 303 | 16 | 310 | 4.82e-58 | 189 |
| MS.gene054446.t1 | MTR_4g089060 | 34.835 | 333 | 175 | 7 | 1 | 303 | 16 | 336 | 1.10e-54 | 181 |
| MS.gene054446.t1 | MTR_4g089060 | 39.908 | 218 | 122 | 3 | 1 | 216 | 16 | 226 | 1.64e-48 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054446.t1 | AT3G05600 | 60.194 | 309 | 118 | 4 | 1 | 304 | 16 | 324 | 1.72e-141 | 402 |
| MS.gene054446.t1 | AT4G02340 | 58.497 | 306 | 120 | 4 | 1 | 304 | 16 | 316 | 3.31e-133 | 381 |
| MS.gene054446.t1 | AT2G26740 | 60.968 | 310 | 114 | 4 | 1 | 304 | 13 | 321 | 1.18e-125 | 362 |
| MS.gene054446.t1 | AT2G26750 | 58.900 | 309 | 121 | 4 | 1 | 304 | 13 | 320 | 1.96e-120 | 348 |
| MS.gene054446.t1 | AT4G15960 | 54.194 | 310 | 135 | 3 | 1 | 304 | 66 | 374 | 5.09e-120 | 349 |
| MS.gene054446.t1 | AT4G15955 | 50.794 | 315 | 117 | 4 | 1 | 304 | 17 | 304 | 9.33e-107 | 313 |
| MS.gene054446.t1 | AT3G05600 | 60.965 | 228 | 84 | 4 | 1 | 223 | 16 | 243 | 3.83e-101 | 296 |
| MS.gene054446.t1 | AT3G51000 | 48.408 | 314 | 141 | 6 | 1 | 304 | 17 | 319 | 4.92e-101 | 299 |
| MS.gene054446.t1 | AT4G15955 | 60.123 | 163 | 55 | 2 | 1 | 153 | 17 | 179 | 6.03e-67 | 207 |
| MS.gene054446.t1 | AT4G15955 | 61.039 | 154 | 50 | 2 | 1 | 144 | 17 | 170 | 4.17e-63 | 197 |
Find 86 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.4:-3984672 | None:intergenic |
| GGCATCAACGGTCTTGATTT+TGG | 0.153935 | 7.4:-3984727 | None:intergenic |
| GGTAAGGTGTCAGGAGTATC+TGG | 0.233107 | 7.4:-3985521 | None:intergenic |
| TTATTATATCTGTAGATTTC+AGG | 0.251191 | 7.4:+3984773 | MS.gene054446:CDS |
| TTGGGGTTTCTACGCATTAA+TGG | 0.262210 | 7.4:-3984708 | None:intergenic |
| GAAATTCATTACAGGTGATT+TGG | 0.277422 | 7.4:+3986022 | MS.gene054446:CDS |
| TACTCTCCCTTGGGAAATAT+TGG | 0.280214 | 7.4:-3985482 | None:intergenic |
| CATTACAGGTGATTTGGATA+TGG | 0.296487 | 7.4:+3986028 | MS.gene054446:CDS |
| TGTTTCTAGTTGGTCATGAT+TGG | 0.334939 | 7.4:+3984613 | MS.gene054446:CDS |
| AGCTGATGGCACCATGGAAT+GGG | 0.338259 | 7.4:+3985979 | MS.gene054446:CDS |
| ATATTTCCCAAGGGAGAGTA+TGG | 0.351665 | 7.4:+3985485 | MS.gene054446:CDS |
| GTCTCCAAATTTGAGAAAAC+AGG | 0.355343 | 7.4:+3985578 | MS.gene054446:CDS |
| CAAGGAAGATGTGCCTAATC+TGG | 0.368261 | 7.4:+3986097 | MS.gene054446:CDS |
| ATCCTGACAACTCGGAAAAC+TGG | 0.375136 | 7.4:+3985455 | MS.gene054446:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.4:-3984429 | None:intergenic |
| GTTTCTAGTTGGTCATGATT+GGG | 0.390166 | 7.4:+3984614 | MS.gene054446:CDS |
| AGCCAAGAGGGTAAGGTGTC+AGG | 0.390169 | 7.4:-3985530 | None:intergenic |
| CATGATTGGGGTGCTATCAT+TGG | 0.391157 | 7.4:+3984627 | MS.gene054446:CDS |
| TTTGAGAAAACAGGCTTCAC+TGG | 0.397561 | 7.4:+3985587 | MS.gene054446:CDS |
| GTCCCTGTGAAATTCATTAC+AGG | 0.400010 | 7.4:+3986014 | MS.gene054446:CDS |
| ATCGCAGAAACCGGGCGAAA+TGG | 0.400152 | 7.4:+3985388 | MS.gene054446:intron |
| CGCCACCAGATTGCGGCTCT+CGG | 0.403229 | 7.4:+3984450 | MS.gene054446:CDS |
| GAAGAAGTGATTATTCAAAA+AGG | 0.403789 | 7.4:+3986119 | MS.gene054446:CDS |
| CTCCTGACACCTTACCCTCT+TGG | 0.407073 | 7.4:+3985528 | MS.gene054446:CDS |
| GATGCCATGCGAGCTGCTTA+TGG | 0.412049 | 7.4:+3984744 | MS.gene054446:CDS |
| TCACCATAGCCACGCAGATC+TGG | 0.413961 | 7.4:-3984498 | None:intergenic |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 7.4:+3985956 | MS.gene054446:intron |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.4:+3984402 | MS.gene054446:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.4:-3984671 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.4:+3984427 | MS.gene054446:CDS |
| CCCAAGGGAGAGTATGGAAC+TGG | 0.436868 | 7.4:+3985491 | MS.gene054446:CDS |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.4:-3984410 | None:intergenic |
| GAGCTGATGGCACCATGGAA+TGG | 0.461653 | 7.4:+3985978 | MS.gene054446:CDS |
| GAGAGCCGAGAGCCGCAATC+TGG | 0.462159 | 7.4:-3984455 | None:intergenic |
| ATAATCACTTCTTCCAGATT+AGG | 0.463079 | 7.4:-3986110 | None:intergenic |
| TCCAGTTCCATACTCTCCCT+TGG | 0.463729 | 7.4:-3985492 | None:intergenic |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.4:-3984402 | None:intergenic |
| GCTCCAGATCTGCGTGGCTA+TGG | 0.482806 | 7.4:+3984495 | MS.gene054446:CDS |
| TTCTGTAAGCCAAGAGGGTA+AGG | 0.483607 | 7.4:-3985537 | None:intergenic |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.4:+3984369 | None:intergenic |
| ATCTGAGCTTCCATTTCGCC+CGG | 0.491141 | 7.4:-3985398 | None:intergenic |
| GTTGCACTTATAGATTTGCT+TGG | 0.491344 | 7.4:+3984579 | MS.gene054446:CDS |
| ATTGCGGCTCTCGGCTCTCT+CGG | 0.495623 | 7.4:+3984459 | MS.gene054446:CDS |
| TCACCTGTAATGAATTTCAC+AGG | 0.496543 | 7.4:-3986017 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.4:+3984418 | MS.gene054446:CDS |
| GTCGATCAAGTGTTTCTAGT+TGG | 0.504272 | 7.4:+3984603 | MS.gene054446:CDS |
| CCAGTTCCATACTCTCCCTT+GGG | 0.508775 | 7.4:-3985491 | None:intergenic |
| GGGCGAAATGGAAGCTCAGA+TGG | 0.525021 | 7.4:+3985400 | MS.gene054446:CDS |
| TTATCTTTATCGCAGAAACC+GGG | 0.536523 | 7.4:+3985380 | MS.gene054446:intron |
| ATGGAATGGGGTGAAAATCA+AGG | 0.540835 | 7.4:+3985992 | MS.gene054446:CDS |
| GAAGCTCAGATGGCTGAAGT+TGG | 0.542944 | 7.4:+3985410 | MS.gene054446:CDS |
| TCTCCCTTGGGAAATATTGG+AGG | 0.546141 | 7.4:-3985479 | None:intergenic |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.4:+3984378 | MS.gene054446:CDS |
| AGCCGAGAGCCGCAATCTGG+TGG | 0.549085 | 7.4:-3984452 | None:intergenic |
| AGCAGCTCGCATGGCATCAA+CGG | 0.552034 | 7.4:-3984739 | None:intergenic |
| GTGTAGCTACTAACTGAAGA+TGG | 0.564708 | 7.4:-3984531 | None:intergenic |
| TTTCTAGTTGGTCATGATTG+GGG | 0.567714 | 7.4:+3984615 | MS.gene054446:CDS |
| ATTGGGGTGCTATCATTGGT+TGG | 0.568173 | 7.4:+3984631 | MS.gene054446:CDS |
| TCTTCAGTTAGTAGCTACAC+AGG | 0.571639 | 7.4:+3984534 | MS.gene054446:CDS |
| ATCTCCATAAGCAGCTCGCA+TGG | 0.576208 | 7.4:-3984748 | None:intergenic |
| GAAGGAGTATATCCATGGTG+GGG | 0.578871 | 7.4:+3986070 | MS.gene054446:CDS |
| TGAAGGAGTATATCCATGGT+GGG | 0.583874 | 7.4:+3986069 | MS.gene054446:CDS |
| TGGTCCTCCAATATTTCCCA+AGG | 0.588717 | 7.4:+3985475 | MS.gene054446:CDS |
| GAATTCATCAAGAAGTTCTG+AGG | 0.589260 | 7.4:+3986197 | MS.gene054446:CDS |
| TCGTCTTCTGTAAGCCAAGA+GGG | 0.590014 | 7.4:-3985542 | None:intergenic |
| TGGAACACTGAGACAAACAT+AGG | 0.590336 | 7.4:-3984688 | None:intergenic |
| CTCTTGGCGCCACCAGATTG+CGG | 0.594106 | 7.4:+3984443 | MS.gene054446:CDS |
| GCCACGCAGATCTGGAGCAA+CGG | 0.594783 | 7.4:-3984490 | None:intergenic |
| AAGGAGTATATCCATGGTGG+GGG | 0.600787 | 7.4:+3986071 | MS.gene054446:CDS |
| GTAAGGTGTCAGGAGTATCT+GGG | 0.606766 | 7.4:-3985520 | None:intergenic |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 7.4:+3985965 | MS.gene054446:intron |
| AACATGAAGGAGTATATCCA+TGG | 0.620148 | 7.4:+3986065 | MS.gene054446:CDS |
| TAACAATGAAGAAGCAGCAG+AGG | 0.620175 | 7.4:+3986154 | MS.gene054446:CDS |
| ATACTCCTTCATGTTTAGTG+AGG | 0.623538 | 7.4:-3986057 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.4:-3984416 | None:intergenic |
| GCTGATGGCACCATGGAATG+GGG | 0.628565 | 7.4:+3985980 | MS.gene054446:CDS |
| CACCTGTAATGAATTTCACA+GGG | 0.630986 | 7.4:-3986016 | None:intergenic |
| ATTTGGAGACAAAATAAGCA+AGG | 0.634682 | 7.4:-3985565 | None:intergenic |
| ATGAAGGAGTATATCCATGG+TGG | 0.640343 | 7.4:+3986068 | MS.gene054446:CDS |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7.4:+3985973 | MS.gene054446:CDS |
| GTACACCTCACTAAACATGA+AGG | 0.657206 | 7.4:+3986052 | MS.gene054446:CDS |
| GTCGTCTTCTGTAAGCCAAG+AGG | 0.663533 | 7.4:-3985543 | None:intergenic |
| GCCGTTGCTCCAGATCTGCG+TGG | 0.702325 | 7.4:+3984489 | MS.gene054446:CDS |
| GGTCCTCCAATATTTCCCAA+GGG | 0.706108 | 7.4:+3985476 | MS.gene054446:CDS |
| GCAGATCTGGAGCAACGGCG+CGG | 0.714874 | 7.4:-3984485 | None:intergenic |
| GCAAATCTATAAGTGCAACA+AGG | 0.718881 | 7.4:-3984575 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTGTTTTTTTTTTTTTTA+AGG | - | chr7.4:3984937-3984956 | None:intergenic | 10.0% |
| !!! | AATCATAATATTTTTTTTAG+GGG | + | chr7.4:3985089-3985108 | MS.gene054446:intron | 10.0% |
| !!! | GAATCATAATATTTTTTTTA+GGG | + | chr7.4:3985088-3985107 | MS.gene054446:intron | 10.0% |
| !!! | TGAATCATAATATTTTTTTT+AGG | + | chr7.4:3985087-3985106 | MS.gene054446:intron | 10.0% |
| !! | AAAAAAAAAACACTTGATTA+AGG | + | chr7.4:3984942-3984961 | MS.gene054446:intron | 15.0% |
| !! | ATATAGAGATCTATAAAAAA+AGG | - | chr7.4:3985347-3985366 | None:intergenic | 15.0% |
| !!! | CCAATAATAGTTTTAAAAAA+TGG | - | chr7.4:3985830-3985849 | None:intergenic | 15.0% |
| !!! | CCATTTTTTAAAACTATTAT+TGG | + | chr7.4:3985827-3985846 | MS.gene054446:intron | 15.0% |
| !! | AATATTATGATTCAACCATA+AGG | - | chr7.4:3985081-3985100 | None:intergenic | 20.0% |
| !! | GATTTCTTAAAGTAAATTAG+GGG | - | chr7.4:3984844-3984863 | None:intergenic | 20.0% |
| !! | GGATTTCTTAAAGTAAATTA+GGG | - | chr7.4:3984845-3984864 | None:intergenic | 20.0% |
| !! | TTATTATATCTGTAGATTTC+AGG | + | chr7.4:3984773-3984792 | MS.gene054446:CDS | 20.0% |
| !!! | AAGAAATCCCTAATATTTTA+TGG | + | chr7.4:3984856-3984875 | MS.gene054446:intron | 20.0% |
| !!! | AGAAATCCCTAATATTTTAT+GGG | + | chr7.4:3984857-3984876 | MS.gene054446:intron | 20.0% |
| !!! | TATATGTTGACAATTCTTTT+TGG | + | chr7.4:3985685-3985704 | MS.gene054446:intron | 20.0% |
| ! | AACTTGTCCCATAAAATATT+AGG | - | chr7.4:3984867-3984886 | None:intergenic | 25.0% |
| ! | AATGCATCTTTCATTAGAAT+TGG | - | chr7.4:3985935-3985954 | None:intergenic | 25.0% |
| ! | ACTTGTCCCATAAAATATTA+GGG | - | chr7.4:3984866-3984885 | None:intergenic | 25.0% |
| ! | ATATTTGTGGAAAACAACAA+AGG | - | chr7.4:3985668-3985687 | None:intergenic | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | + | chr7.4:3985955-3985974 | MS.gene054446:intron | 25.0% |
| ! | GAAGAAGTGATTATTCAAAA+AGG | + | chr7.4:3986119-3986138 | MS.gene054446:CDS | 25.0% |
| ! | GAATTGTCAACATATATTTG+TGG | - | chr7.4:3985681-3985700 | None:intergenic | 25.0% |
| ! | GGGATTTCTTAAAGTAAATT+AGG | - | chr7.4:3984846-3984865 | None:intergenic | 25.0% |
| ! | TGATTGAATATAACATGTGT+CGG | - | chr7.4:3985804-3985823 | None:intergenic | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | + | chr7.4:3985956-3985975 | MS.gene054446:intron | 25.0% |
| AACAACACTCAACACAAAAT+TGG | - | chr7.4:3985875-3985894 | None:intergenic | 30.0% | |
| AATCAAAAGAGGAAACCTTA+TGG | + | chr7.4:3985063-3985082 | MS.gene054446:intron | 30.0% | |
| AATCAAGTGTTAAACACACT+TGG | - | chr7.4:3985018-3985037 | None:intergenic | 30.0% | |
| AGTGATTATTCAAAAAGGAG+TGG | + | chr7.4:3986124-3986143 | MS.gene054446:CDS | 30.0% | |
| AGTTGAGTCTAAATCAAAAG+AGG | + | chr7.4:3985052-3985071 | MS.gene054446:intron | 30.0% | |
| ATAATCACTTCTTCCAGATT+AGG | - | chr7.4:3986113-3986132 | None:intergenic | 30.0% | |
| ATAGATCTCTATATCATGAG+AGG | + | chr7.4:3985152-3985171 | MS.gene054446:intron | 30.0% | |
| ATCAAGTGTTAAACACACTT+GGG | - | chr7.4:3985017-3985036 | None:intergenic | 30.0% | |
| ATCTATAAAAAAAGGCAACC+TGG | - | chr7.4:3985339-3985358 | None:intergenic | 30.0% | |
| ATTTGGAGACAAAATAAGCA+AGG | - | chr7.4:3985568-3985587 | None:intergenic | 30.0% | |
| CATACAATACACCAAATGAT+GGG | + | chr7.4:3985273-3985292 | MS.gene054446:intron | 30.0% | |
| GAAATTCATTACAGGTGATT+TGG | + | chr7.4:3986022-3986041 | MS.gene054446:CDS | 30.0% | |
| TGAAAAATATCCTGACAACT+CGG | + | chr7.4:3985447-3985466 | MS.gene054446:CDS | 30.0% | |
| ! | TACACAGGTTTTCATATAGT+GGG | + | chr7.4:3984549-3984568 | MS.gene054446:CDS | 30.0% |
| ATACTCCTTCATGTTTAGTG+AGG | - | chr7.4:3986060-3986079 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | + | chr7.4:3984378-3984397 | MS.gene054446:CDS | 35.0% | |
| CACCTGTAATGAATTTCACA+GGG | - | chr7.4:3986019-3986038 | None:intergenic | 35.0% | |
| CAGAGAGAAAAGTAGAAAAG+TGG | - | chr7.4:3984818-3984837 | None:intergenic | 35.0% | |
| CTTATCTTTATCGCAGAAAC+CGG | + | chr7.4:3985379-3985398 | MS.gene054446:intron | 35.0% | |
| GCAAATCTATAAGTGCAACA+AGG | - | chr7.4:3984578-3984597 | None:intergenic | 35.0% | |
| GCATACAATACACCAAATGA+TGG | + | chr7.4:3985272-3985291 | MS.gene054446:intron | 35.0% | |
| GTCTCCAAATTTGAGAAAAC+AGG | + | chr7.4:3985578-3985597 | MS.gene054446:CDS | 35.0% | |
| TATATCATGAGAGGTAACCT+TGG | + | chr7.4:3985161-3985180 | MS.gene054446:intron | 35.0% | |
| TATCAACACATATCGAACAC+CGG | - | chr7.4:3985774-3985793 | None:intergenic | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | - | chr7.4:3986020-3986039 | None:intergenic | 35.0% | |
| TTATCTTTATCGCAGAAACC+GGG | + | chr7.4:3985380-3985399 | MS.gene054446:intron | 35.0% | |
| ! | AACATGAAGGAGTATATCCA+TGG | + | chr7.4:3986065-3986084 | MS.gene054446:CDS | 35.0% |
| ! | AATATAACATGTGTCGGTGT+CGG | - | chr7.4:3985798-3985817 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | - | chr7.4:3984675-3984694 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | - | chr7.4:3984674-3984693 | None:intergenic | 35.0% |
| ! | CATTACAGGTGATTTGGATA+TGG | + | chr7.4:3986028-3986047 | MS.gene054446:CDS | 35.0% |
| ! | CTACACAGGTTTTCATATAG+TGG | + | chr7.4:3984548-3984567 | MS.gene054446:CDS | 35.0% |
| ! | GAAGCCTGTTTTCTCAAATT+TGG | - | chr7.4:3985585-3985604 | None:intergenic | 35.0% |
| ! | GTTGCACTTATAGATTTGCT+TGG | + | chr7.4:3984579-3984598 | MS.gene054446:CDS | 35.0% |
| !! | GTTTCTAGTTGGTCATGATT+GGG | + | chr7.4:3984614-3984633 | MS.gene054446:CDS | 35.0% |
| !! | TGTTTCTAGTTGGTCATGAT+TGG | + | chr7.4:3984613-3984632 | MS.gene054446:CDS | 35.0% |
| !! | TTTCTAGTTGGTCATGATTG+GGG | + | chr7.4:3984615-3984634 | MS.gene054446:CDS | 35.0% |
| AAAGCCTCTAGTGTGAAAAC+AGG | + | chr7.4:3985241-3985260 | MS.gene054446:intron | 40.0% | |
| AAGAAGTTGAACTAGCTCAC+CGG | + | chr7.4:3984974-3984993 | MS.gene054446:intron | 40.0% | |
| AAGCCTCTAGTGTGAAAACA+GGG | + | chr7.4:3985242-3985261 | MS.gene054446:intron | 40.0% | |
| ATATTTCCCAAGGGAGAGTA+TGG | + | chr7.4:3985485-3985504 | MS.gene054446:CDS | 40.0% | |
| ATCAACACATATCGAACACC+GGG | - | chr7.4:3985773-3985792 | None:intergenic | 40.0% | |
| ATGGAATGGGGTGAAAATCA+AGG | + | chr7.4:3985992-3986011 | MS.gene054446:CDS | 40.0% | |
| CATACGAAAAGTCTGGAAAG+GGG | - | chr7.4:3985300-3985319 | None:intergenic | 40.0% | |
| GCATACGAAAAGTCTGGAAA+GGG | - | chr7.4:3985301-3985320 | None:intergenic | 40.0% | |
| GTACACCTCACTAAACATGA+AGG | + | chr7.4:3986052-3986071 | MS.gene054446:CDS | 40.0% | |
| GTCCCTGTGAAATTCATTAC+AGG | + | chr7.4:3986014-3986033 | MS.gene054446:CDS | 40.0% | |
| GTGTAGCTACTAACTGAAGA+TGG | - | chr7.4:3984534-3984553 | None:intergenic | 40.0% | |
| TAACAATGAAGAAGCAGCAG+AGG | + | chr7.4:3986154-3986173 | MS.gene054446:CDS | 40.0% | |
| TACTCTCCCTTGGGAAATAT+TGG | - | chr7.4:3985485-3985504 | None:intergenic | 40.0% | |
| TCTTCAGTTAGTAGCTACAC+AGG | + | chr7.4:3984534-3984553 | MS.gene054446:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | - | chr7.4:3984691-3984710 | None:intergenic | 40.0% | |
| TTGGGGTTTCTACGCATTAA+TGG | - | chr7.4:3984711-3984730 | None:intergenic | 40.0% | |
| TTTCAGTTTGAAGACATGCC+CGG | + | chr7.4:3985752-3985771 | MS.gene054446:intron | 40.0% | |
| TTTGAGAAAACAGGCTTCAC+TGG | + | chr7.4:3985587-3985606 | MS.gene054446:CDS | 40.0% | |
| ! | ATGAAGGAGTATATCCATGG+TGG | + | chr7.4:3986068-3986087 | MS.gene054446:CDS | 40.0% |
| ! | CATCAACGGTCTTGATTTTG+GGG | - | chr7.4:3984728-3984747 | None:intergenic | 40.0% |
| ! | CTTTCCAGACTTTTCGTATG+CGG | + | chr7.4:3985300-3985319 | MS.gene054446:intron | 40.0% |
| ! | GCATCAACGGTCTTGATTTT+GGG | - | chr7.4:3984729-3984748 | None:intergenic | 40.0% |
| ! | TGAAGGAGTATATCCATGGT+GGG | + | chr7.4:3986069-3986088 | MS.gene054446:CDS | 40.0% |
| ! | TTACCCTGTTTTCACACTAG+AGG | - | chr7.4:3985248-3985267 | None:intergenic | 40.0% |
| ! | TTGATTTTCACCCCATTCCA+TGG | - | chr7.4:3985993-3986012 | None:intergenic | 40.0% |
| ! | TTTCCAGACTTTTCGTATGC+GGG | + | chr7.4:3985301-3985320 | MS.gene054446:intron | 40.0% |
| !! | GTCGATCAAGTGTTTCTAGT+TGG | + | chr7.4:3984603-3984622 | MS.gene054446:CDS | 40.0% |
| ATCCTGACAACTCGGAAAAC+TGG | + | chr7.4:3985455-3985474 | MS.gene054446:CDS | 45.0% | |
| CAAGGAAGATGTGCCTAATC+TGG | + | chr7.4:3986097-3986116 | MS.gene054446:CDS | 45.0% | |
| CGCATACGAAAAGTCTGGAA+AGG | - | chr7.4:3985302-3985321 | None:intergenic | 45.0% | |
| GGTCCTCCAATATTTCCCAA+GGG | + | chr7.4:3985476-3985495 | MS.gene054446:CDS | 45.0% | |
| GTTGCAGTCATGTGACTGAA+AGG | + | chr7.4:3985197-3985216 | MS.gene054446:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+TGG | + | chr7.4:3985204-3985223 | MS.gene054446:intron | 45.0% | |
| TCGTCTTCTGTAAGCCAAGA+GGG | - | chr7.4:3985545-3985564 | None:intergenic | 45.0% | |
| TCTCCCTTGGGAAATATTGG+AGG | - | chr7.4:3985482-3985501 | None:intergenic | 45.0% | |
| TGGTCCTCCAATATTTCCCA+AGG | + | chr7.4:3985475-3985494 | MS.gene054446:CDS | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | + | chr7.4:3984427-3984446 | MS.gene054446:CDS | 45.0% | |
| TTCTGTAAGCCAAGAGGGTA+AGG | - | chr7.4:3985540-3985559 | None:intergenic | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | + | chr7.4:3985965-3985984 | MS.gene054446:intron | 45.0% | |
| ! | AAGGAGTATATCCATGGTGG+GGG | + | chr7.4:3986071-3986090 | MS.gene054446:CDS | 45.0% |
| ! | ATTGGGGTGCTATCATTGGT+TGG | + | chr7.4:3984631-3984650 | MS.gene054446:CDS | 45.0% |
| ! | CATGATTGGGGTGCTATCAT+TGG | + | chr7.4:3984627-3984646 | MS.gene054446:CDS | 45.0% |
| ! | GAAGGAGTATATCCATGGTG+GGG | + | chr7.4:3986070-3986089 | MS.gene054446:CDS | 45.0% |
| ! | GGCATCAACGGTCTTGATTT+TGG | - | chr7.4:3984730-3984749 | None:intergenic | 45.0% |
| ! | GGTTTCCTCTTTTCATGTGC+CGG | - | chr7.4:3984996-3985015 | None:intergenic | 45.0% |
| !! | GTAAGGTGTCAGGAGTATCT+GGG | - | chr7.4:3985523-3985542 | None:intergenic | 45.0% |
| !! | TCACACTAGAGGCTTTTTCC+AGG | - | chr7.4:3985237-3985256 | None:intergenic | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | - | chr7.4:3984419-3984438 | None:intergenic | 50.0% | |
| AGCTGATGGCACCATGGAAT+GGG | + | chr7.4:3985979-3985998 | MS.gene054446:CDS | 50.0% | |
| ATCTCCATAAGCAGCTCGCA+TGG | - | chr7.4:3984751-3984770 | None:intergenic | 50.0% | |
| ATCTGAGCTTCCATTTCGCC+CGG | - | chr7.4:3985401-3985420 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr7.4:3985181-3985200 | None:intergenic | 50.0% | |
| CCAGTTCCATACTCTCCCTT+GGG | - | chr7.4:3985494-3985513 | None:intergenic | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | + | chr7.4:3984402-3984421 | MS.gene054446:CDS | 50.0% | |
| GAAGCTCAGATGGCTGAAGT+TGG | + | chr7.4:3985410-3985429 | MS.gene054446:CDS | 50.0% | |
| GTCGTCTTCTGTAAGCCAAG+AGG | - | chr7.4:3985546-3985565 | None:intergenic | 50.0% | |
| TCCAGTTCCATACTCTCCCT+TGG | - | chr7.4:3985495-3985514 | None:intergenic | 50.0% | |
| TGGAAAGGGGTCCCATCATT+TGG | - | chr7.4:3985287-3985306 | None:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | + | chr7.4:3984418-3984437 | MS.gene054446:CDS | 50.0% | |
| ! | GACCAGTTTTCCGAGTTGTC+AGG | - | chr7.4:3985460-3985479 | None:intergenic | 50.0% |
| ! | TATCCATGGTGGGGGATTCA+AGG | + | chr7.4:3986079-3986098 | MS.gene054446:CDS | 50.0% |
| !! | AAGGTCACTGGTTCAAGTCC+TGG | + | chr7.4:3985216-3985235 | MS.gene054446:intron | 50.0% |
| !! | GGTAAGGTGTCAGGAGTATC+TGG | - | chr7.4:3985524-3985543 | None:intergenic | 50.0% |
| AGAGGTAACCTTGGCGCAAC+TGG | + | chr7.4:3985170-3985189 | MS.gene054446:intron | 55.0% | |
| AGCAGCTCGCATGGCATCAA+CGG | - | chr7.4:3984742-3984761 | None:intergenic | 55.0% | |
| ATCGCAGAAACCGGGCGAAA+TGG | + | chr7.4:3985388-3985407 | MS.gene054446:intron | 55.0% | |
| ATTGGGAGCTGATGGCACCA+TGG | + | chr7.4:3985973-3985992 | MS.gene054446:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | - | chr7.4:3984413-3984432 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | - | chr7.4:3984405-3984424 | None:intergenic | 55.0% | |
| CTCCTGACACCTTACCCTCT+TGG | + | chr7.4:3985528-3985547 | MS.gene054446:CDS | 55.0% | |
| CTTCCTTGAATCCCCCACCA+TGG | - | chr7.4:3986085-3986104 | None:intergenic | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | + | chr7.4:3985978-3985997 | MS.gene054446:CDS | 55.0% | |
| GATGCCATGCGAGCTGCTTA+TGG | + | chr7.4:3984744-3984763 | MS.gene054446:CDS | 55.0% | |
| GCTCACCGGCACATGAAAAG+AGG | + | chr7.4:3984988-3985007 | MS.gene054446:intron | 55.0% | |
| GCTCCCGCATACGAAAAGTC+TGG | - | chr7.4:3985307-3985326 | None:intergenic | 55.0% | |
| GCTGATGGCACCATGGAATG+GGG | + | chr7.4:3985980-3985999 | MS.gene054446:CDS | 55.0% | |
| GGGCGAAATGGAAGCTCAGA+TGG | + | chr7.4:3985400-3985419 | MS.gene054446:CDS | 55.0% | |
| TCACCATAGCCACGCAGATC+TGG | - | chr7.4:3984501-3984520 | None:intergenic | 55.0% | |
| ! | AGCCAAGAGGGTAAGGTGTC+AGG | - | chr7.4:3985533-3985552 | None:intergenic | 55.0% |
| ! | CCCAAGGGAGAGTATGGAAC+TGG | + | chr7.4:3985491-3985510 | MS.gene054446:CDS | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | - | chr7.4:3984432-3984451 | None:intergenic | 55.0% |
| ATTGCGGCTCTCGGCTCTCT+CGG | + | chr7.4:3984459-3984478 | MS.gene054446:CDS | 60.0% | |
| CTCTTGGCGCCACCAGATTG+CGG | + | chr7.4:3984443-3984462 | MS.gene054446:CDS | 60.0% | |
| GCTCCAGATCTGCGTGGCTA+TGG | + | chr7.4:3984495-3984514 | MS.gene054446:CDS | 60.0% | |
| ! | GCCACGCAGATCTGGAGCAA+CGG | - | chr7.4:3984493-3984512 | None:intergenic | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+AGG | + | chr7.4:3985318-3985337 | MS.gene054446:intron | 60.0% |
| AGCCGAGAGCCGCAATCTGG+TGG | - | chr7.4:3984455-3984474 | None:intergenic | 65.0% | |
| CGCCACCAGATTGCGGCTCT+CGG | + | chr7.4:3984450-3984469 | MS.gene054446:CDS | 65.0% | |
| GAGAGCCGAGAGCCGCAATC+TGG | - | chr7.4:3984458-3984477 | None:intergenic | 65.0% | |
| GCCGTTGCTCCAGATCTGCG+TGG | + | chr7.4:3984489-3984508 | MS.gene054446:CDS | 65.0% | |
| ! | GCAGATCTGGAGCAACGGCG+CGG | - | chr7.4:3984488-3984507 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3984372 | 3986217 | 3984372 | ID=MS.gene054446 |
| chr7.4 | mRNA | 3984372 | 3986217 | 3984372 | ID=MS.gene054446.t1;Parent=MS.gene054446 |
| chr7.4 | exon | 3984372 | 3984794 | 3984372 | ID=MS.gene054446.t1.exon1;Parent=MS.gene054446.t1 |
| chr7.4 | CDS | 3984372 | 3984794 | 3984372 | ID=cds.MS.gene054446.t1;Parent=MS.gene054446.t1 |
| chr7.4 | exon | 3985395 | 3985639 | 3985395 | ID=MS.gene054446.t1.exon2;Parent=MS.gene054446.t1 |
| chr7.4 | CDS | 3985395 | 3985639 | 3985395 | ID=cds.MS.gene054446.t1;Parent=MS.gene054446.t1 |
| chr7.4 | exon | 3985971 | 3986217 | 3985971 | ID=MS.gene054446.t1.exon3;Parent=MS.gene054446.t1 |
| chr7.4 | CDS | 3985971 | 3986217 | 3985971 | ID=cds.MS.gene054446.t1;Parent=MS.gene054446.t1 |
| Gene Sequence |
| Protein sequence |
