Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054445.t1 | RHN49252.1 | 96.1 | 304 | 12 | 0 | 1 | 304 | 46 | 349 | 1.60E-175 | 625.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054445.t1 | I6YGS0 | 34.2 | 310 | 186 | 6 | 1 | 301 | 16 | 316 | 2.4e-50 | 200.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054445.t1 | A2Q324 | 96.1 | 304 | 12 | 0 | 1 | 304 | 16 | 319 | 1.2e-175 | 625.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054434 | MS.gene054445 | 0.957361 | 3.27E-115 | -1.69E-46 |
| MS.gene054445 | MS.gene054446 | 0.993462 | 6.67E-200 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054445 | MS.gene066361 | PPI |
| MS.gene054445 | MS.gene035371 | PPI |
| MS.gene054445 | MS.gene071500 | PPI |
| MS.gene76453 | MS.gene054445 | PPI |
| MS.gene054445 | MS.gene041604 | PPI |
| MS.gene035373 | MS.gene054445 | PPI |
| MS.gene054445 | MS.gene025707 | PPI |
| MS.gene054445 | MS.gene22955 | PPI |
| MS.gene035367 | MS.gene054445 | PPI |
| MS.gene77823 | MS.gene054445 | PPI |
| MS.gene054445 | MS.gene012063 | PPI |
| MS.gene054445 | MS.gene035369 | PPI |
| MS.gene054445 | MS.gene071502 | PPI |
| MS.gene071504 | MS.gene054445 | PPI |
| MS.gene054445 | MS.gene07001 | PPI |
| MS.gene066360 | MS.gene054445 | PPI |
| MS.gene89620 | MS.gene054445 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054445.t1 | MTR_7g113050 | 96.053 | 304 | 12 | 0 | 1 | 304 | 16 | 319 | 0.0 | 616 |
| MS.gene054445.t1 | MTR_7g113030 | 94.408 | 304 | 17 | 0 | 1 | 304 | 16 | 319 | 0.0 | 606 |
| MS.gene054445.t1 | MTR_7g112615 | 92.763 | 304 | 22 | 0 | 1 | 304 | 16 | 319 | 0.0 | 595 |
| MS.gene054445.t1 | MTR_7g112620 | 90.789 | 304 | 28 | 0 | 1 | 304 | 16 | 319 | 0.0 | 586 |
| MS.gene054445.t1 | MTR_7g113020 | 87.500 | 304 | 38 | 0 | 1 | 304 | 16 | 319 | 0.0 | 571 |
| MS.gene054445.t1 | MTR_7g112960 | 75.490 | 306 | 71 | 2 | 1 | 304 | 16 | 319 | 7.41e-177 | 491 |
| MS.gene054445.t1 | MTR_7g112963 | 75.817 | 306 | 70 | 2 | 1 | 304 | 16 | 319 | 1.69e-176 | 490 |
| MS.gene054445.t1 | MTR_4g005160 | 72.727 | 308 | 79 | 3 | 1 | 304 | 16 | 322 | 1.00e-173 | 483 |
| MS.gene054445.t1 | MTR_7g112970 | 74.013 | 304 | 76 | 2 | 1 | 304 | 16 | 316 | 9.58e-173 | 481 |
| MS.gene054445.t1 | MTR_7g113050 | 95.067 | 223 | 11 | 0 | 1 | 223 | 16 | 238 | 5.06e-162 | 451 |
| MS.gene054445.t1 | MTR_7g112615 | 92.825 | 223 | 16 | 0 | 1 | 223 | 16 | 238 | 9.73e-158 | 440 |
| MS.gene054445.t1 | MTR_7g113010 | 69.776 | 268 | 77 | 2 | 1 | 266 | 16 | 281 | 2.28e-139 | 406 |
| MS.gene054445.t1 | MTR_4g120240 | 59.804 | 306 | 119 | 3 | 1 | 304 | 52 | 355 | 3.75e-136 | 389 |
| MS.gene054445.t1 | MTR_7g108825 | 61.184 | 304 | 116 | 2 | 1 | 304 | 16 | 317 | 1.21e-135 | 387 |
| MS.gene054445.t1 | MTR_8g076680 | 49.342 | 304 | 150 | 3 | 1 | 304 | 18 | 317 | 5.44e-103 | 304 |
| MS.gene054445.t1 | MTR_7g112615 | 94.444 | 144 | 8 | 0 | 1 | 144 | 16 | 159 | 8.52e-99 | 288 |
| MS.gene054445.t1 | MTR_7g112910 | 59.438 | 249 | 46 | 5 | 57 | 304 | 1 | 195 | 1.21e-93 | 276 |
| MS.gene054445.t1 | MTR_7g108825 | 60.090 | 223 | 87 | 2 | 1 | 223 | 16 | 236 | 1.12e-92 | 275 |
| MS.gene054445.t1 | MTR_1g083480 | 77.778 | 144 | 28 | 2 | 1 | 141 | 16 | 158 | 3.15e-79 | 238 |
| MS.gene054445.t1 | MTR_8g076680 | 51.121 | 223 | 107 | 2 | 1 | 223 | 18 | 238 | 1.71e-77 | 236 |
| MS.gene054445.t1 | MTR_3g024250 | 84.906 | 106 | 16 | 0 | 32 | 137 | 2 | 107 | 3.84e-62 | 193 |
| MS.gene054445.t1 | MTR_2g090240 | 35.948 | 306 | 182 | 6 | 1 | 303 | 16 | 310 | 4.98e-60 | 194 |
| MS.gene054445.t1 | MTR_4g089060 | 37.582 | 306 | 176 | 6 | 1 | 303 | 16 | 309 | 8.61e-60 | 193 |
| MS.gene054445.t1 | MTR_4g089040 | 37.582 | 306 | 176 | 6 | 1 | 303 | 16 | 309 | 4.10e-59 | 192 |
| MS.gene054445.t1 | MTR_2g090245 | 35.621 | 306 | 183 | 7 | 1 | 303 | 16 | 310 | 4.82e-58 | 189 |
| MS.gene054445.t1 | MTR_4g089060 | 34.835 | 333 | 175 | 7 | 1 | 303 | 16 | 336 | 1.10e-54 | 181 |
| MS.gene054445.t1 | MTR_4g089060 | 39.908 | 218 | 122 | 3 | 1 | 216 | 16 | 226 | 1.64e-48 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054445.t1 | AT3G05600 | 60.194 | 309 | 118 | 4 | 1 | 304 | 16 | 324 | 1.72e-141 | 402 |
| MS.gene054445.t1 | AT4G02340 | 58.497 | 306 | 120 | 4 | 1 | 304 | 16 | 316 | 3.31e-133 | 381 |
| MS.gene054445.t1 | AT2G26740 | 60.968 | 310 | 114 | 4 | 1 | 304 | 13 | 321 | 1.18e-125 | 362 |
| MS.gene054445.t1 | AT2G26750 | 58.900 | 309 | 121 | 4 | 1 | 304 | 13 | 320 | 1.96e-120 | 348 |
| MS.gene054445.t1 | AT4G15960 | 54.194 | 310 | 135 | 3 | 1 | 304 | 66 | 374 | 5.09e-120 | 349 |
| MS.gene054445.t1 | AT4G15955 | 50.794 | 315 | 117 | 4 | 1 | 304 | 17 | 304 | 9.33e-107 | 313 |
| MS.gene054445.t1 | AT3G05600 | 60.965 | 228 | 84 | 4 | 1 | 223 | 16 | 243 | 3.83e-101 | 296 |
| MS.gene054445.t1 | AT3G51000 | 48.408 | 314 | 141 | 6 | 1 | 304 | 17 | 319 | 4.92e-101 | 299 |
| MS.gene054445.t1 | AT4G15955 | 60.123 | 163 | 55 | 2 | 1 | 153 | 17 | 179 | 6.03e-67 | 207 |
| MS.gene054445.t1 | AT4G15955 | 61.039 | 154 | 50 | 2 | 1 | 144 | 17 | 170 | 4.17e-63 | 197 |
Find 86 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.4:-3972693 | None:intergenic |
| GGCATCAACGGTCTTGATTT+TGG | 0.153935 | 7.4:-3972748 | None:intergenic |
| GGTAAGGTGTCAGGAGTATC+TGG | 0.233107 | 7.4:-3973542 | None:intergenic |
| TTATTATATCTGTAGATTTC+AGG | 0.251191 | 7.4:+3972794 | MS.gene054445:CDS |
| TTGGGGTTTCTACGCATTAA+TGG | 0.262210 | 7.4:-3972729 | None:intergenic |
| GAAATTCATTACAGGTGATT+TGG | 0.277422 | 7.4:+3974043 | MS.gene054445:CDS |
| TACTCTCCCTTGGGAAATAT+TGG | 0.280214 | 7.4:-3973503 | None:intergenic |
| CATTACAGGTGATTTGGATA+TGG | 0.296487 | 7.4:+3974049 | MS.gene054445:CDS |
| TGTTTCTAGTTGGTCATGAT+TGG | 0.334939 | 7.4:+3972634 | MS.gene054445:CDS |
| AGCTGATGGCACCATGGAAT+GGG | 0.338259 | 7.4:+3974000 | MS.gene054445:CDS |
| ATATTTCCCAAGGGAGAGTA+TGG | 0.351665 | 7.4:+3973506 | MS.gene054445:CDS |
| GTCTCCAAATTTGAGAAAAC+AGG | 0.355343 | 7.4:+3973599 | MS.gene054445:CDS |
| CAAGGAAGATGTGCCTAATC+TGG | 0.368261 | 7.4:+3974118 | MS.gene054445:CDS |
| ATCCTGACAACTCGGAAAAC+TGG | 0.375136 | 7.4:+3973476 | MS.gene054445:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.4:-3972450 | None:intergenic |
| GTTTCTAGTTGGTCATGATT+GGG | 0.390166 | 7.4:+3972635 | MS.gene054445:CDS |
| AGCCAAGAGGGTAAGGTGTC+AGG | 0.390169 | 7.4:-3973551 | None:intergenic |
| CATGATTGGGGTGCTATCAT+TGG | 0.391157 | 7.4:+3972648 | MS.gene054445:CDS |
| TTTGAGAAAACAGGCTTCAC+TGG | 0.397561 | 7.4:+3973608 | MS.gene054445:CDS |
| GTCCCTGTGAAATTCATTAC+AGG | 0.400010 | 7.4:+3974035 | MS.gene054445:CDS |
| ATCGCAGAAACCGGGCGAAA+TGG | 0.400152 | 7.4:+3973409 | MS.gene054445:intron |
| CGCCACCAGATTGCGGCTCT+CGG | 0.403229 | 7.4:+3972471 | MS.gene054445:CDS |
| GAAGAAGTGATTATTCAAAA+AGG | 0.403789 | 7.4:+3974140 | MS.gene054445:CDS |
| CTCCTGACACCTTACCCTCT+TGG | 0.407073 | 7.4:+3973549 | MS.gene054445:CDS |
| GATGCCATGCGAGCTGCTTA+TGG | 0.412049 | 7.4:+3972765 | MS.gene054445:CDS |
| TCACCATAGCCACGCAGATC+TGG | 0.413961 | 7.4:-3972519 | None:intergenic |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 7.4:+3973977 | MS.gene054445:intron |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.4:+3972423 | MS.gene054445:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.4:-3972692 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.4:+3972448 | MS.gene054445:CDS |
| CCCAAGGGAGAGTATGGAAC+TGG | 0.436868 | 7.4:+3973512 | MS.gene054445:CDS |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.4:-3972431 | None:intergenic |
| GAGCTGATGGCACCATGGAA+TGG | 0.461653 | 7.4:+3973999 | MS.gene054445:CDS |
| GAGAGCCGAGAGCCGCAATC+TGG | 0.462159 | 7.4:-3972476 | None:intergenic |
| ATAATCACTTCTTCCAGATT+AGG | 0.463079 | 7.4:-3974131 | None:intergenic |
| TCCAGTTCCATACTCTCCCT+TGG | 0.463729 | 7.4:-3973513 | None:intergenic |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.4:-3972423 | None:intergenic |
| GCTCCAGATCTGCGTGGCTA+TGG | 0.482806 | 7.4:+3972516 | MS.gene054445:CDS |
| TTCTGTAAGCCAAGAGGGTA+AGG | 0.483607 | 7.4:-3973558 | None:intergenic |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.4:+3972390 | None:intergenic |
| ATCTGAGCTTCCATTTCGCC+CGG | 0.491141 | 7.4:-3973419 | None:intergenic |
| GTTGCACTTATAGATTTGCT+TGG | 0.491344 | 7.4:+3972600 | MS.gene054445:CDS |
| ATTGCGGCTCTCGGCTCTCT+CGG | 0.495623 | 7.4:+3972480 | MS.gene054445:CDS |
| TCACCTGTAATGAATTTCAC+AGG | 0.496543 | 7.4:-3974038 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.4:+3972439 | MS.gene054445:CDS |
| GTCGATCAAGTGTTTCTAGT+TGG | 0.504272 | 7.4:+3972624 | MS.gene054445:CDS |
| CCAGTTCCATACTCTCCCTT+GGG | 0.508775 | 7.4:-3973512 | None:intergenic |
| GGGCGAAATGGAAGCTCAGA+TGG | 0.525021 | 7.4:+3973421 | MS.gene054445:CDS |
| TTATCTTTATCGCAGAAACC+GGG | 0.536523 | 7.4:+3973401 | MS.gene054445:intron |
| ATGGAATGGGGTGAAAATCA+AGG | 0.540835 | 7.4:+3974013 | MS.gene054445:CDS |
| GAAGCTCAGATGGCTGAAGT+TGG | 0.542944 | 7.4:+3973431 | MS.gene054445:CDS |
| TCTCCCTTGGGAAATATTGG+AGG | 0.546141 | 7.4:-3973500 | None:intergenic |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.548522 | 7.4:+3972399 | MS.gene054445:CDS |
| AGCCGAGAGCCGCAATCTGG+TGG | 0.549085 | 7.4:-3972473 | None:intergenic |
| AGCAGCTCGCATGGCATCAA+CGG | 0.552034 | 7.4:-3972760 | None:intergenic |
| GTGTAGCTACTAACTGAAGA+TGG | 0.564708 | 7.4:-3972552 | None:intergenic |
| TTTCTAGTTGGTCATGATTG+GGG | 0.567714 | 7.4:+3972636 | MS.gene054445:CDS |
| ATTGGGGTGCTATCATTGGT+TGG | 0.568173 | 7.4:+3972652 | MS.gene054445:CDS |
| TCTTCAGTTAGTAGCTACAC+AGG | 0.571639 | 7.4:+3972555 | MS.gene054445:CDS |
| ATCTCCATAAGCAGCTCGCA+TGG | 0.576208 | 7.4:-3972769 | None:intergenic |
| GAAGGAGTATATCCATGGTG+GGG | 0.578871 | 7.4:+3974091 | MS.gene054445:CDS |
| TGAAGGAGTATATCCATGGT+GGG | 0.583874 | 7.4:+3974090 | MS.gene054445:CDS |
| TGGTCCTCCAATATTTCCCA+AGG | 0.588717 | 7.4:+3973496 | MS.gene054445:CDS |
| GAATTCATCAAGAAGTTCTG+AGG | 0.589260 | 7.4:+3974218 | MS.gene054445:CDS |
| TCGTCTTCTGTAAGCCAAGA+GGG | 0.590014 | 7.4:-3973563 | None:intergenic |
| TGGAACACTGAGACAAACAT+AGG | 0.590336 | 7.4:-3972709 | None:intergenic |
| CTCTTGGCGCCACCAGATTG+CGG | 0.594106 | 7.4:+3972464 | MS.gene054445:CDS |
| GCCACGCAGATCTGGAGCAA+CGG | 0.594783 | 7.4:-3972511 | None:intergenic |
| AAGGAGTATATCCATGGTGG+GGG | 0.600787 | 7.4:+3974092 | MS.gene054445:CDS |
| GTAAGGTGTCAGGAGTATCT+GGG | 0.606766 | 7.4:-3973541 | None:intergenic |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 7.4:+3973986 | MS.gene054445:intron |
| AACATGAAGGAGTATATCCA+TGG | 0.620148 | 7.4:+3974086 | MS.gene054445:CDS |
| TAACAATGAAGAAGCAGCAG+AGG | 0.620175 | 7.4:+3974175 | MS.gene054445:CDS |
| ATACTCCTTCATGTTTAGTG+AGG | 0.623538 | 7.4:-3974078 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.4:-3972437 | None:intergenic |
| GCTGATGGCACCATGGAATG+GGG | 0.628565 | 7.4:+3974001 | MS.gene054445:CDS |
| CACCTGTAATGAATTTCACA+GGG | 0.630986 | 7.4:-3974037 | None:intergenic |
| ATTTGGAGACAAAATAAGCA+AGG | 0.634682 | 7.4:-3973586 | None:intergenic |
| ATGAAGGAGTATATCCATGG+TGG | 0.640343 | 7.4:+3974089 | MS.gene054445:CDS |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7.4:+3973994 | MS.gene054445:CDS |
| GTACACCTCACTAAACATGA+AGG | 0.657206 | 7.4:+3974073 | MS.gene054445:CDS |
| GTCGTCTTCTGTAAGCCAAG+AGG | 0.663533 | 7.4:-3973564 | None:intergenic |
| GCCGTTGCTCCAGATCTGCG+TGG | 0.702325 | 7.4:+3972510 | MS.gene054445:CDS |
| GGTCCTCCAATATTTCCCAA+GGG | 0.706108 | 7.4:+3973497 | MS.gene054445:CDS |
| GCAGATCTGGAGCAACGGCG+CGG | 0.714874 | 7.4:-3972506 | None:intergenic |
| GCAAATCTATAAGTGCAACA+AGG | 0.718881 | 7.4:-3972596 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTGTTTTTTTTTTTTTTA+AGG | - | chr7.4:3972958-3972977 | None:intergenic | 10.0% |
| !!! | AATCATAATATTTTTTTTAG+GGG | + | chr7.4:3973110-3973129 | MS.gene054445:intron | 10.0% |
| !!! | GAATCATAATATTTTTTTTA+GGG | + | chr7.4:3973109-3973128 | MS.gene054445:intron | 10.0% |
| !!! | TGAATCATAATATTTTTTTT+AGG | + | chr7.4:3973108-3973127 | MS.gene054445:intron | 10.0% |
| !! | AAAAAAAAAACACTTGATTA+AGG | + | chr7.4:3972963-3972982 | MS.gene054445:intron | 15.0% |
| !! | ATATAGAGATCTATAAAAAA+AGG | - | chr7.4:3973368-3973387 | None:intergenic | 15.0% |
| !!! | CCAATAATAGTTTTAAAAAA+TGG | - | chr7.4:3973851-3973870 | None:intergenic | 15.0% |
| !!! | CCATTTTTTAAAACTATTAT+TGG | + | chr7.4:3973848-3973867 | MS.gene054445:intron | 15.0% |
| !! | AATATTATGATTCAACCATA+AGG | - | chr7.4:3973102-3973121 | None:intergenic | 20.0% |
| !! | GATTTCTTAAAGTAAATTAG+GGG | - | chr7.4:3972865-3972884 | None:intergenic | 20.0% |
| !! | GGATTTCTTAAAGTAAATTA+GGG | - | chr7.4:3972866-3972885 | None:intergenic | 20.0% |
| !! | TTATTATATCTGTAGATTTC+AGG | + | chr7.4:3972794-3972813 | MS.gene054445:CDS | 20.0% |
| !!! | AAGAAATCCCTAATATTTTA+TGG | + | chr7.4:3972877-3972896 | MS.gene054445:intron | 20.0% |
| !!! | AGAAATCCCTAATATTTTAT+GGG | + | chr7.4:3972878-3972897 | MS.gene054445:intron | 20.0% |
| !!! | TATATGTTGACAATTCTTTT+TGG | + | chr7.4:3973706-3973725 | MS.gene054445:intron | 20.0% |
| ! | AACTTGTCCCATAAAATATT+AGG | - | chr7.4:3972888-3972907 | None:intergenic | 25.0% |
| ! | AATGCATCTTTCATTAGAAT+TGG | - | chr7.4:3973956-3973975 | None:intergenic | 25.0% |
| ! | ACTTGTCCCATAAAATATTA+GGG | - | chr7.4:3972887-3972906 | None:intergenic | 25.0% |
| ! | ATATTTGTGGAAAACAACAA+AGG | - | chr7.4:3973689-3973708 | None:intergenic | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | + | chr7.4:3973976-3973995 | MS.gene054445:intron | 25.0% |
| ! | GAAGAAGTGATTATTCAAAA+AGG | + | chr7.4:3974140-3974159 | MS.gene054445:CDS | 25.0% |
| ! | GAATTGTCAACATATATTTG+TGG | - | chr7.4:3973702-3973721 | None:intergenic | 25.0% |
| ! | GGGATTTCTTAAAGTAAATT+AGG | - | chr7.4:3972867-3972886 | None:intergenic | 25.0% |
| ! | TGATTGAATATAACATGTGT+CGG | - | chr7.4:3973825-3973844 | None:intergenic | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | + | chr7.4:3973977-3973996 | MS.gene054445:intron | 25.0% |
| AACAACACTCAACACAAAAT+TGG | - | chr7.4:3973896-3973915 | None:intergenic | 30.0% | |
| AATCAAAAGAGGAAACCTTA+TGG | + | chr7.4:3973084-3973103 | MS.gene054445:intron | 30.0% | |
| AATCAAGTGTTAAACACACT+TGG | - | chr7.4:3973039-3973058 | None:intergenic | 30.0% | |
| AGTGATTATTCAAAAAGGAG+TGG | + | chr7.4:3974145-3974164 | MS.gene054445:CDS | 30.0% | |
| AGTTGAGTCTAAATCAAAAG+AGG | + | chr7.4:3973073-3973092 | MS.gene054445:intron | 30.0% | |
| ATAATCACTTCTTCCAGATT+AGG | - | chr7.4:3974134-3974153 | None:intergenic | 30.0% | |
| ATAGATCTCTATATCATGAG+AGG | + | chr7.4:3973173-3973192 | MS.gene054445:intron | 30.0% | |
| ATCAAGTGTTAAACACACTT+GGG | - | chr7.4:3973038-3973057 | None:intergenic | 30.0% | |
| ATCTATAAAAAAAGGCAACC+TGG | - | chr7.4:3973360-3973379 | None:intergenic | 30.0% | |
| ATTTGGAGACAAAATAAGCA+AGG | - | chr7.4:3973589-3973608 | None:intergenic | 30.0% | |
| CATACAATACACCAAATGAT+GGG | + | chr7.4:3973294-3973313 | MS.gene054445:intron | 30.0% | |
| GAAATTCATTACAGGTGATT+TGG | + | chr7.4:3974043-3974062 | MS.gene054445:CDS | 30.0% | |
| TGAAAAATATCCTGACAACT+CGG | + | chr7.4:3973468-3973487 | MS.gene054445:CDS | 30.0% | |
| ! | TACACAGGTTTTCATATAGT+GGG | + | chr7.4:3972570-3972589 | MS.gene054445:CDS | 30.0% |
| ATACTCCTTCATGTTTAGTG+AGG | - | chr7.4:3974081-3974100 | None:intergenic | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | + | chr7.4:3972399-3972418 | MS.gene054445:CDS | 35.0% | |
| CACCTGTAATGAATTTCACA+GGG | - | chr7.4:3974040-3974059 | None:intergenic | 35.0% | |
| CAGAGAGAAAAGTAGAAAAG+TGG | - | chr7.4:3972839-3972858 | None:intergenic | 35.0% | |
| CTTATCTTTATCGCAGAAAC+CGG | + | chr7.4:3973400-3973419 | MS.gene054445:intron | 35.0% | |
| GCAAATCTATAAGTGCAACA+AGG | - | chr7.4:3972599-3972618 | None:intergenic | 35.0% | |
| GCATACAATACACCAAATGA+TGG | + | chr7.4:3973293-3973312 | MS.gene054445:intron | 35.0% | |
| GTCTCCAAATTTGAGAAAAC+AGG | + | chr7.4:3973599-3973618 | MS.gene054445:CDS | 35.0% | |
| TATATCATGAGAGGTAACCT+TGG | + | chr7.4:3973182-3973201 | MS.gene054445:intron | 35.0% | |
| TATCAACACATATCGAACAC+CGG | - | chr7.4:3973795-3973814 | None:intergenic | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | - | chr7.4:3974041-3974060 | None:intergenic | 35.0% | |
| TTATCTTTATCGCAGAAACC+GGG | + | chr7.4:3973401-3973420 | MS.gene054445:intron | 35.0% | |
| ! | AACATGAAGGAGTATATCCA+TGG | + | chr7.4:3974086-3974105 | MS.gene054445:CDS | 35.0% |
| ! | AATATAACATGTGTCGGTGT+CGG | - | chr7.4:3973819-3973838 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | - | chr7.4:3972696-3972715 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | - | chr7.4:3972695-3972714 | None:intergenic | 35.0% |
| ! | CATTACAGGTGATTTGGATA+TGG | + | chr7.4:3974049-3974068 | MS.gene054445:CDS | 35.0% |
| ! | CTACACAGGTTTTCATATAG+TGG | + | chr7.4:3972569-3972588 | MS.gene054445:CDS | 35.0% |
| ! | GAAGCCTGTTTTCTCAAATT+TGG | - | chr7.4:3973606-3973625 | None:intergenic | 35.0% |
| ! | GTTGCACTTATAGATTTGCT+TGG | + | chr7.4:3972600-3972619 | MS.gene054445:CDS | 35.0% |
| !! | GTTTCTAGTTGGTCATGATT+GGG | + | chr7.4:3972635-3972654 | MS.gene054445:CDS | 35.0% |
| !! | TGTTTCTAGTTGGTCATGAT+TGG | + | chr7.4:3972634-3972653 | MS.gene054445:CDS | 35.0% |
| !! | TTTCTAGTTGGTCATGATTG+GGG | + | chr7.4:3972636-3972655 | MS.gene054445:CDS | 35.0% |
| AAAGCCTCTAGTGTGAAAAC+AGG | + | chr7.4:3973262-3973281 | MS.gene054445:intron | 40.0% | |
| AAGAAGTTGAACTAGCTCAC+CGG | + | chr7.4:3972995-3973014 | MS.gene054445:intron | 40.0% | |
| AAGCCTCTAGTGTGAAAACA+GGG | + | chr7.4:3973263-3973282 | MS.gene054445:intron | 40.0% | |
| ATATTTCCCAAGGGAGAGTA+TGG | + | chr7.4:3973506-3973525 | MS.gene054445:CDS | 40.0% | |
| ATCAACACATATCGAACACC+GGG | - | chr7.4:3973794-3973813 | None:intergenic | 40.0% | |
| ATGGAATGGGGTGAAAATCA+AGG | + | chr7.4:3974013-3974032 | MS.gene054445:CDS | 40.0% | |
| CATACGAAAAGTCTGGAAAG+GGG | - | chr7.4:3973321-3973340 | None:intergenic | 40.0% | |
| GCATACGAAAAGTCTGGAAA+GGG | - | chr7.4:3973322-3973341 | None:intergenic | 40.0% | |
| GTACACCTCACTAAACATGA+AGG | + | chr7.4:3974073-3974092 | MS.gene054445:CDS | 40.0% | |
| GTCCCTGTGAAATTCATTAC+AGG | + | chr7.4:3974035-3974054 | MS.gene054445:CDS | 40.0% | |
| GTGTAGCTACTAACTGAAGA+TGG | - | chr7.4:3972555-3972574 | None:intergenic | 40.0% | |
| TAACAATGAAGAAGCAGCAG+AGG | + | chr7.4:3974175-3974194 | MS.gene054445:CDS | 40.0% | |
| TACTCTCCCTTGGGAAATAT+TGG | - | chr7.4:3973506-3973525 | None:intergenic | 40.0% | |
| TCTTCAGTTAGTAGCTACAC+AGG | + | chr7.4:3972555-3972574 | MS.gene054445:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | - | chr7.4:3972712-3972731 | None:intergenic | 40.0% | |
| TTGGGGTTTCTACGCATTAA+TGG | - | chr7.4:3972732-3972751 | None:intergenic | 40.0% | |
| TTTCAGTTTGAAGACATGCC+CGG | + | chr7.4:3973773-3973792 | MS.gene054445:intron | 40.0% | |
| TTTGAGAAAACAGGCTTCAC+TGG | + | chr7.4:3973608-3973627 | MS.gene054445:CDS | 40.0% | |
| ! | ATGAAGGAGTATATCCATGG+TGG | + | chr7.4:3974089-3974108 | MS.gene054445:CDS | 40.0% |
| ! | CATCAACGGTCTTGATTTTG+GGG | - | chr7.4:3972749-3972768 | None:intergenic | 40.0% |
| ! | CTTTCCAGACTTTTCGTATG+CGG | + | chr7.4:3973321-3973340 | MS.gene054445:intron | 40.0% |
| ! | GCATCAACGGTCTTGATTTT+GGG | - | chr7.4:3972750-3972769 | None:intergenic | 40.0% |
| ! | TGAAGGAGTATATCCATGGT+GGG | + | chr7.4:3974090-3974109 | MS.gene054445:CDS | 40.0% |
| ! | TTACCCTGTTTTCACACTAG+AGG | - | chr7.4:3973269-3973288 | None:intergenic | 40.0% |
| ! | TTGATTTTCACCCCATTCCA+TGG | - | chr7.4:3974014-3974033 | None:intergenic | 40.0% |
| ! | TTTCCAGACTTTTCGTATGC+GGG | + | chr7.4:3973322-3973341 | MS.gene054445:intron | 40.0% |
| !! | GTCGATCAAGTGTTTCTAGT+TGG | + | chr7.4:3972624-3972643 | MS.gene054445:CDS | 40.0% |
| ATCCTGACAACTCGGAAAAC+TGG | + | chr7.4:3973476-3973495 | MS.gene054445:CDS | 45.0% | |
| CAAGGAAGATGTGCCTAATC+TGG | + | chr7.4:3974118-3974137 | MS.gene054445:CDS | 45.0% | |
| CGCATACGAAAAGTCTGGAA+AGG | - | chr7.4:3973323-3973342 | None:intergenic | 45.0% | |
| GGTCCTCCAATATTTCCCAA+GGG | + | chr7.4:3973497-3973516 | MS.gene054445:CDS | 45.0% | |
| GTTGCAGTCATGTGACTGAA+AGG | + | chr7.4:3973218-3973237 | MS.gene054445:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+TGG | + | chr7.4:3973225-3973244 | MS.gene054445:intron | 45.0% | |
| TCGTCTTCTGTAAGCCAAGA+GGG | - | chr7.4:3973566-3973585 | None:intergenic | 45.0% | |
| TCTCCCTTGGGAAATATTGG+AGG | - | chr7.4:3973503-3973522 | None:intergenic | 45.0% | |
| TGGTCCTCCAATATTTCCCA+AGG | + | chr7.4:3973496-3973515 | MS.gene054445:CDS | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | + | chr7.4:3972448-3972467 | MS.gene054445:CDS | 45.0% | |
| TTCTGTAAGCCAAGAGGGTA+AGG | - | chr7.4:3973561-3973580 | None:intergenic | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | + | chr7.4:3973986-3974005 | MS.gene054445:intron | 45.0% | |
| ! | AAGGAGTATATCCATGGTGG+GGG | + | chr7.4:3974092-3974111 | MS.gene054445:CDS | 45.0% |
| ! | ATTGGGGTGCTATCATTGGT+TGG | + | chr7.4:3972652-3972671 | MS.gene054445:CDS | 45.0% |
| ! | CATGATTGGGGTGCTATCAT+TGG | + | chr7.4:3972648-3972667 | MS.gene054445:CDS | 45.0% |
| ! | GAAGGAGTATATCCATGGTG+GGG | + | chr7.4:3974091-3974110 | MS.gene054445:CDS | 45.0% |
| ! | GGCATCAACGGTCTTGATTT+TGG | - | chr7.4:3972751-3972770 | None:intergenic | 45.0% |
| ! | GGTTTCCTCTTTTCATGTGC+CGG | - | chr7.4:3973017-3973036 | None:intergenic | 45.0% |
| !! | GTAAGGTGTCAGGAGTATCT+GGG | - | chr7.4:3973544-3973563 | None:intergenic | 45.0% |
| !! | TCACACTAGAGGCTTTTTCC+AGG | - | chr7.4:3973258-3973277 | None:intergenic | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | - | chr7.4:3972440-3972459 | None:intergenic | 50.0% | |
| AGCTGATGGCACCATGGAAT+GGG | + | chr7.4:3974000-3974019 | MS.gene054445:CDS | 50.0% | |
| ATCTCCATAAGCAGCTCGCA+TGG | - | chr7.4:3972772-3972791 | None:intergenic | 50.0% | |
| ATCTGAGCTTCCATTTCGCC+CGG | - | chr7.4:3973422-3973441 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr7.4:3973202-3973221 | None:intergenic | 50.0% | |
| CCAGTTCCATACTCTCCCTT+GGG | - | chr7.4:3973515-3973534 | None:intergenic | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | + | chr7.4:3972423-3972442 | MS.gene054445:CDS | 50.0% | |
| GAAGCTCAGATGGCTGAAGT+TGG | + | chr7.4:3973431-3973450 | MS.gene054445:CDS | 50.0% | |
| GTCGTCTTCTGTAAGCCAAG+AGG | - | chr7.4:3973567-3973586 | None:intergenic | 50.0% | |
| TCCAGTTCCATACTCTCCCT+TGG | - | chr7.4:3973516-3973535 | None:intergenic | 50.0% | |
| TGGAAAGGGGTCCCATCATT+TGG | - | chr7.4:3973308-3973327 | None:intergenic | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | + | chr7.4:3972439-3972458 | MS.gene054445:CDS | 50.0% | |
| ! | GACCAGTTTTCCGAGTTGTC+AGG | - | chr7.4:3973481-3973500 | None:intergenic | 50.0% |
| ! | TATCCATGGTGGGGGATTCA+AGG | + | chr7.4:3974100-3974119 | MS.gene054445:CDS | 50.0% |
| !! | AAGGTCACTGGTTCAAGTCC+TGG | + | chr7.4:3973237-3973256 | MS.gene054445:intron | 50.0% |
| !! | GGTAAGGTGTCAGGAGTATC+TGG | - | chr7.4:3973545-3973564 | None:intergenic | 50.0% |
| AGAGGTAACCTTGGCGCAAC+TGG | + | chr7.4:3973191-3973210 | MS.gene054445:intron | 55.0% | |
| AGCAGCTCGCATGGCATCAA+CGG | - | chr7.4:3972763-3972782 | None:intergenic | 55.0% | |
| ATCGCAGAAACCGGGCGAAA+TGG | + | chr7.4:3973409-3973428 | MS.gene054445:intron | 55.0% | |
| ATTGGGAGCTGATGGCACCA+TGG | + | chr7.4:3973994-3974013 | MS.gene054445:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | - | chr7.4:3972434-3972453 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | - | chr7.4:3972426-3972445 | None:intergenic | 55.0% | |
| CTCCTGACACCTTACCCTCT+TGG | + | chr7.4:3973549-3973568 | MS.gene054445:CDS | 55.0% | |
| CTTCCTTGAATCCCCCACCA+TGG | - | chr7.4:3974106-3974125 | None:intergenic | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | + | chr7.4:3973999-3974018 | MS.gene054445:CDS | 55.0% | |
| GATGCCATGCGAGCTGCTTA+TGG | + | chr7.4:3972765-3972784 | MS.gene054445:CDS | 55.0% | |
| GCTCACCGGCACATGAAAAG+AGG | + | chr7.4:3973009-3973028 | MS.gene054445:intron | 55.0% | |
| GCTCCCGCATACGAAAAGTC+TGG | - | chr7.4:3973328-3973347 | None:intergenic | 55.0% | |
| GCTGATGGCACCATGGAATG+GGG | + | chr7.4:3974001-3974020 | MS.gene054445:CDS | 55.0% | |
| GGGCGAAATGGAAGCTCAGA+TGG | + | chr7.4:3973421-3973440 | MS.gene054445:CDS | 55.0% | |
| TCACCATAGCCACGCAGATC+TGG | - | chr7.4:3972522-3972541 | None:intergenic | 55.0% | |
| ! | AGCCAAGAGGGTAAGGTGTC+AGG | - | chr7.4:3973554-3973573 | None:intergenic | 55.0% |
| ! | CCCAAGGGAGAGTATGGAAC+TGG | + | chr7.4:3973512-3973531 | MS.gene054445:CDS | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | - | chr7.4:3972453-3972472 | None:intergenic | 55.0% |
| ATTGCGGCTCTCGGCTCTCT+CGG | + | chr7.4:3972480-3972499 | MS.gene054445:CDS | 60.0% | |
| CTCTTGGCGCCACCAGATTG+CGG | + | chr7.4:3972464-3972483 | MS.gene054445:CDS | 60.0% | |
| GCTCCAGATCTGCGTGGCTA+TGG | + | chr7.4:3972516-3972535 | MS.gene054445:CDS | 60.0% | |
| ! | GCCACGCAGATCTGGAGCAA+CGG | - | chr7.4:3972514-3972533 | None:intergenic | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+AGG | + | chr7.4:3973339-3973358 | MS.gene054445:intron | 60.0% |
| AGCCGAGAGCCGCAATCTGG+TGG | - | chr7.4:3972476-3972495 | None:intergenic | 65.0% | |
| CGCCACCAGATTGCGGCTCT+CGG | + | chr7.4:3972471-3972490 | MS.gene054445:CDS | 65.0% | |
| GAGAGCCGAGAGCCGCAATC+TGG | - | chr7.4:3972479-3972498 | None:intergenic | 65.0% | |
| GCCGTTGCTCCAGATCTGCG+TGG | + | chr7.4:3972510-3972529 | MS.gene054445:CDS | 65.0% | |
| ! | GCAGATCTGGAGCAACGGCG+CGG | - | chr7.4:3972509-3972528 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3972393 | 3974238 | 3972393 | ID=MS.gene054445 |
| chr7.4 | mRNA | 3972393 | 3974238 | 3972393 | ID=MS.gene054445.t1;Parent=MS.gene054445 |
| chr7.4 | exon | 3972393 | 3972815 | 3972393 | ID=MS.gene054445.t1.exon1;Parent=MS.gene054445.t1 |
| chr7.4 | CDS | 3972393 | 3972815 | 3972393 | ID=cds.MS.gene054445.t1;Parent=MS.gene054445.t1 |
| chr7.4 | exon | 3973416 | 3973660 | 3973416 | ID=MS.gene054445.t1.exon2;Parent=MS.gene054445.t1 |
| chr7.4 | CDS | 3973416 | 3973660 | 3973416 | ID=cds.MS.gene054445.t1;Parent=MS.gene054445.t1 |
| chr7.4 | exon | 3973992 | 3974238 | 3973992 | ID=MS.gene054445.t1.exon3;Parent=MS.gene054445.t1 |
| chr7.4 | CDS | 3973992 | 3974238 | 3973992 | ID=cds.MS.gene054445.t1;Parent=MS.gene054445.t1 |
| Gene Sequence |
| Protein sequence |
