Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98277.t1 | XP_013460940.1 | 98.5 | 668 | 9 | 1 | 1 | 667 | 1 | 668 | 0.00E+00 | 1290 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98277.t1 | F4JF21 | 64.6 | 622 | 207 | 3 | 1 | 615 | 1 | 616 | 3.4e-235 | 815.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98277.t1 | A0A072UYW5 | 98.5 | 668 | 9 | 1 | 1 | 667 | 1 | 668 | 0.0e+00 | 1290.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene98277 | 0.901169 | 3.51E-78 | -1.69E-46 |
| MS.gene049378 | MS.gene98277 | 0.818664 | 1.74E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene98277 | 0.814863 | 1.24E-51 | -1.69E-46 |
| MS.gene04987 | MS.gene98277 | 0.812106 | 5.01E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene98277 | 0.859745 | 3.34E-63 | -1.69E-46 |
| MS.gene050227 | MS.gene98277 | 0.877368 | 6.65E-69 | -1.69E-46 |
| MS.gene050228 | MS.gene98277 | 0.872692 | 2.62E-67 | -1.69E-46 |
| MS.gene050277 | MS.gene98277 | 0.81126 | 7.65E-51 | -1.69E-46 |
| MS.gene050303 | MS.gene98277 | 0.863285 | 2.78E-64 | -1.69E-46 |
| MS.gene050330 | MS.gene98277 | -0.8767 | 1.13E-68 | -1.69E-46 |
| MS.gene050558 | MS.gene98277 | 0.823967 | 1.04E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene98277 | -0.869615 | 2.71E-66 | -1.69E-46 |
| MS.gene050642 | MS.gene98277 | 0.900988 | 4.22E-78 | -1.69E-46 |
| MS.gene050719 | MS.gene98277 | 0.812851 | 3.44E-51 | -1.69E-46 |
| MS.gene050721 | MS.gene98277 | 0.811354 | 7.30E-51 | -1.69E-46 |
| MS.gene050820 | MS.gene98277 | 0.816291 | 5.96E-52 | -1.69E-46 |
| MS.gene051240 | MS.gene98277 | 0.828025 | 1.13E-54 | -1.69E-46 |
| MS.gene051257 | MS.gene98277 | 0.841307 | 5.15E-58 | -1.69E-46 |
| MS.gene051349 | MS.gene98277 | 0.813919 | 2.01E-51 | -1.69E-46 |
| MS.gene051633 | MS.gene98277 | 0.813091 | 3.05E-51 | -1.69E-46 |
| MS.gene051662 | MS.gene98277 | 0.840964 | 6.33E-58 | -1.69E-46 |
| MS.gene051663 | MS.gene98277 | 0.821255 | 4.45E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene98277 | 0.861673 | 8.70E-64 | -1.69E-46 |
| MS.gene052176 | MS.gene98277 | 0.885324 | 8.97E-72 | -1.69E-46 |
| MS.gene052286 | MS.gene98277 | 0.818144 | 2.28E-52 | -1.69E-46 |
| MS.gene052302 | MS.gene98277 | 0.840817 | 6.92E-58 | -1.69E-46 |
| MS.gene052309 | MS.gene98277 | -0.871993 | 4.47E-67 | -1.69E-46 |
| MS.gene052358 | MS.gene98277 | -0.824104 | 9.67E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene98277 | 0.850991 | 1.19E-60 | -1.69E-46 |
| MS.gene052389 | MS.gene98277 | 0.818341 | 2.06E-52 | -1.69E-46 |
| MS.gene052600 | MS.gene98277 | 0.925057 | 3.07E-90 | -1.69E-46 |
| MS.gene052856 | MS.gene98277 | 0.815791 | 7.71E-52 | -1.69E-46 |
| MS.gene052858 | MS.gene98277 | 0.817897 | 2.60E-52 | -1.69E-46 |
| MS.gene052860 | MS.gene98277 | 0.80999 | 1.44E-50 | -1.69E-46 |
| MS.gene053054 | MS.gene98277 | -0.818917 | 1.53E-52 | -1.69E-46 |
| MS.gene053080 | MS.gene98277 | 0.803794 | 2.94E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene98277 | 0.847307 | 1.26E-59 | -1.69E-46 |
| MS.gene054701 | MS.gene98277 | 0.825809 | 3.83E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene98277 | 0.8074 | 5.15E-50 | -1.69E-46 |
| MS.gene054942 | MS.gene98277 | 0.898902 | 3.36E-77 | -1.69E-46 |
| MS.gene054983 | MS.gene98277 | 0.811475 | 6.87E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene98277 | 0.804212 | 2.41E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene98277 | -0.812466 | 4.18E-51 | -1.69E-46 |
| MS.gene056087 | MS.gene98277 | 0.815176 | 1.06E-51 | -1.69E-46 |
| MS.gene056091 | MS.gene98277 | 0.800972 | 1.12E-48 | -1.69E-46 |
| MS.gene056506 | MS.gene98277 | 0.802509 | 5.42E-49 | -1.69E-46 |
| MS.gene056552 | MS.gene98277 | 0.807403 | 5.14E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene98277 | 0.804336 | 2.27E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene98277 | 0.853476 | 2.33E-61 | -1.69E-46 |
| MS.gene057060 | MS.gene98277 | 0.832494 | 9.15E-56 | -1.69E-46 |
| MS.gene057121 | MS.gene98277 | 0.8382 | 3.31E-57 | -1.69E-46 |
| MS.gene057439 | MS.gene98277 | 0.807383 | 5.19E-50 | -1.69E-46 |
| MS.gene057555 | MS.gene98277 | 0.824169 | 9.34E-54 | -1.69E-46 |
| MS.gene05795 | MS.gene98277 | 0.807604 | 4.66E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene98277 | 0.81689 | 4.38E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene98277 | 0.804603 | 2.00E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene98277 | 0.81015 | 1.33E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene98277 | 0.83812 | 3.47E-57 | -1.69E-46 |
| MS.gene058182 | MS.gene98277 | 0.801455 | 8.93E-49 | -1.69E-46 |
| MS.gene058200 | MS.gene98277 | 0.80724 | 5.57E-50 | -1.69E-46 |
| MS.gene058201 | MS.gene98277 | 0.819799 | 9.61E-53 | -1.69E-46 |
| MS.gene058749 | MS.gene98277 | 0.819768 | 9.77E-53 | -1.69E-46 |
| MS.gene058833 | MS.gene98277 | 0.854282 | 1.37E-61 | -1.69E-46 |
| MS.gene059247 | MS.gene98277 | 0.823963 | 1.04E-53 | -1.69E-46 |
| MS.gene05954 | MS.gene98277 | 0.833104 | 6.46E-56 | -1.69E-46 |
| MS.gene059569 | MS.gene98277 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene98277 | 0.823758 | 1.17E-53 | -1.69E-46 |
| MS.gene060165 | MS.gene98277 | 0.838963 | 2.10E-57 | -1.69E-46 |
| MS.gene060297 | MS.gene98277 | 0.819367 | 1.21E-52 | -1.69E-46 |
| MS.gene060476 | MS.gene98277 | 0.815378 | 9.54E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene98277 | 0.807288 | 5.44E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene98277 | 0.804286 | 2.32E-49 | -1.69E-46 |
| MS.gene060619 | MS.gene98277 | 0.830224 | 3.31E-55 | -1.69E-46 |
| MS.gene061040 | MS.gene98277 | -0.855908 | 4.60E-62 | -1.69E-46 |
| MS.gene061114 | MS.gene98277 | -0.81218 | 4.83E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98277.t1 | MTR_3g075050 | 98.653 | 668 | 8 | 1 | 1 | 667 | 1 | 668 | 0.0 | 1345 |
| MS.gene98277.t1 | MTR_3g075050 | 98.333 | 480 | 8 | 0 | 1 | 480 | 1 | 480 | 0.0 | 967 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98277.t1 | AT3G48500 | 71.569 | 612 | 163 | 4 | 1 | 606 | 1 | 607 | 0.0 | 900 |
| MS.gene98277.t1 | AT3G48500 | 68.331 | 641 | 163 | 5 | 1 | 606 | 1 | 636 | 0.0 | 885 |
Find 193 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAGAGGGTTTAAGGTTTA+AGG | 0.114801 | 3.1:+61590868 | None:intergenic |
| CTTCCTTCCATAGTTTCTTA+TGG | 0.175288 | 3.1:+61580596 | None:intergenic |
| TCGGATCAAATTCATGTTAA+TGG | 0.194739 | 3.1:-61580017 | MS.gene98277:CDS |
| GGAATAAGGGAGAGGGTTTA+AGG | 0.214064 | 3.1:+61590861 | None:intergenic |
| GGTACTAATGCATTCTTATA+AGG | 0.230750 | 3.1:+61584186 | None:intergenic |
| TGGTGGATGACGGTGGAATA+AGG | 0.231461 | 3.1:+61590847 | None:intergenic |
| GGAAGCTAATAAGGATTTAT+TGG | 0.236286 | 3.1:-61590225 | MS.gene98277:CDS |
| GGCGAAGCAGTTTGAGATTA+AGG | 0.241674 | 3.1:-61590495 | MS.gene98277:CDS |
| AACCAATCATTGTTCTTTAT+AGG | 0.253075 | 3.1:+61588516 | None:intergenic |
| TAAAGAACAATGATTGGTTT+TGG | 0.254290 | 3.1:-61588512 | MS.gene98277:CDS |
| TACATCAGATGATCTATATT+TGG | 0.254545 | 3.1:+61586840 | None:intergenic |
| TGCCCACAATTGATTTGTTA+TGG | 0.269036 | 3.1:+61580204 | None:intergenic |
| TAGCGATACAGAGGACTTTC+AGG | 0.270401 | 3.1:+61580287 | None:intergenic |
| GGTTTAAGGTTTAAGGGTTT+AGG | 0.271336 | 3.1:+61590875 | None:intergenic |
| GAAGAAGAAGATTGAGGAAA+TGG | 0.271584 | 3.1:-61590540 | MS.gene98277:CDS |
| TGCTTCGTCTTCAGATTCTT+TGG | 0.272263 | 3.1:+61590721 | None:intergenic |
| ATTGGAAGAGGAATCTTATA+AGG | 0.274488 | 3.1:-61590207 | MS.gene98277:intron |
| TCTGTATCGCTATGACTATT+GGG | 0.278078 | 3.1:-61580276 | MS.gene98277:CDS |
| AGTGACGGAAGAGGAGTATT+TGG | 0.296475 | 3.1:-61590516 | MS.gene98277:CDS |
| TCTTCCTCTGGCTTGTCTCC+TGG | 0.300554 | 3.1:+61586362 | None:intergenic |
| GAAAGTGAAGAGATAAGAAT+TGG | 0.303313 | 3.1:+61590898 | None:intergenic |
| CTCTGTATCGCTATGACTAT+TGG | 0.305129 | 3.1:-61580277 | MS.gene98277:CDS |
| CGGAGGAGTTGAAGACTAAA+TGG | 0.307855 | 3.1:-61590463 | MS.gene98277:CDS |
| GTTTAAGGTTTAAGGGTTTA+GGG | 0.321489 | 3.1:+61590876 | None:intergenic |
| GTCCGCGCGAATTCGGCTTC+AGG | 0.329940 | 3.1:+61590644 | None:intergenic |
| GGAGAGGGTTTAAGGTTTAA+GGG | 0.330041 | 3.1:+61590869 | None:intergenic |
| TGAGTGGGTGGAAGCTAATA+AGG | 0.337017 | 3.1:-61590234 | MS.gene98277:CDS |
| GCCCACAATTGATTTGTTAT+GGG | 0.339910 | 3.1:+61580205 | None:intergenic |
| ATTAATCCTGATAAATATAA+AGG | 0.347698 | 3.1:-61584279 | MS.gene98277:CDS |
| GACCGTCATTGTTGAAATTA+CGG | 0.356334 | 3.1:-61588463 | MS.gene98277:intron |
| GGAGGCGAAGAGAGTGAGGT+TGG | 0.363629 | 3.1:-61590336 | MS.gene98277:CDS |
| TCTTCGTCACGGTGAAATAT+TGG | 0.368899 | 3.1:+61586676 | None:intergenic |
| TGAGATTAAGGAAGATGTTC+CGG | 0.369550 | 3.1:-61590483 | MS.gene98277:CDS |
| AGCGAGATCCTTATCGCTTC+CGG | 0.369751 | 3.1:-61586890 | MS.gene98277:CDS |
| TTGGCCTCCAAGAGGGTGGG+AGG | 0.370988 | 3.1:-61590402 | MS.gene98277:CDS |
| CGGATCAAATTCATGTTAAT+GGG | 0.375652 | 3.1:-61580016 | MS.gene98277:CDS |
| TTCCTATAAAGAACAATGAT+TGG | 0.376316 | 3.1:-61588518 | MS.gene98277:CDS |
| TGTTAAAGAGCTGGACTTAG+AGG | 0.378218 | 3.1:-61581061 | MS.gene98277:CDS |
| ACGAAGCACGTCGCCGCAAC+TGG | 0.379056 | 3.1:-61590706 | MS.gene98277:CDS |
| GAATGTTGAACCCTAGGTAT+AGG | 0.380725 | 3.1:-61590562 | MS.gene98277:CDS |
| TGGAGGAAGGTTTCGTCGAC+GGG | 0.384013 | 3.1:+61590761 | None:intergenic |
| TACTAATCCAGATGAATTGC+GGG | 0.389911 | 3.1:-61586653 | MS.gene98277:intron |
| GAGACTCGTCCGCGCGAATT+CGG | 0.391123 | 3.1:+61590637 | None:intergenic |
| GGTGGATGACGGTGGAATAA+GGG | 0.391608 | 3.1:+61590848 | None:intergenic |
| GTGCAAACCCGCAATTCATC+TGG | 0.394940 | 3.1:+61586646 | None:intergenic |
| AAAGTGAAGAGATAAGAATT+GGG | 0.395883 | 3.1:+61590899 | None:intergenic |
| CGATCCACCTCCCACCCTCT+TGG | 0.399413 | 3.1:+61590395 | None:intergenic |
| TCCTCCCAGGGTGATAATCT+TGG | 0.407958 | 3.1:+61590073 | None:intergenic |
| AGTTGGTTCCGCCGAGGGAT+TGG | 0.408224 | 3.1:-61590421 | MS.gene98277:CDS |
| GGTGGTTTGCGGTGGGGTAG+AGG | 0.409025 | 3.1:+61590824 | None:intergenic |
| AACGAAGTTCGATCGGGAAC+CGG | 0.411671 | 3.1:+61586871 | None:intergenic |
| TACAGCTCCATAAGAAACTA+TGG | 0.413741 | 3.1:-61580603 | MS.gene98277:intron |
| TTGCGGTGGGGTAGAGGTGG+TGG | 0.415890 | 3.1:+61590830 | None:intergenic |
| GAAAATAGAGGTTCTTCCTC+TGG | 0.426046 | 3.1:+61586350 | None:intergenic |
| AGGTTGGAGGATATTGAAAA+TGG | 0.426184 | 3.1:-61590320 | MS.gene98277:CDS |
| AAGAAGAAGATTGAGGAAAT+GGG | 0.426271 | 3.1:-61590539 | MS.gene98277:CDS |
| CAACTGGATCGAACGCGGTT+GGG | 0.427640 | 3.1:-61590690 | MS.gene98277:CDS |
| GGTTTGCGGTGGGGTAGAGG+TGG | 0.428134 | 3.1:+61590827 | None:intergenic |
| CTAGCATCAACATACCTTCC+TGG | 0.436065 | 3.1:+61580335 | None:intergenic |
| TTTCGCAGTCGTAAAACTCT+TGG | 0.437285 | 3.1:-61580374 | MS.gene98277:intron |
| TGAAACTGATGATGTGTGTT+TGG | 0.437905 | 3.1:-61590288 | MS.gene98277:CDS |
| TCGAACGCGGTTGGGCTCCA+TGG | 0.438642 | 3.1:-61590682 | MS.gene98277:CDS |
| ATCGGGAACCGGAAGCGATA+AGG | 0.446047 | 3.1:+61586882 | None:intergenic |
| GTCATCGTCCTCTTCTTCTT+CGG | 0.451280 | 3.1:+61580091 | None:intergenic |
| TAATCACCCATATGTTGAAA+AGG | 0.454207 | 3.1:-61586327 | MS.gene98277:intron |
| TGATGAGAGGTGGTTTGCGG+TGG | 0.459913 | 3.1:+61590816 | None:intergenic |
| TATTCGTGAAGCGCATAAGA+TGG | 0.461672 | 3.1:-61590357 | MS.gene98277:CDS |
| TCCACCTCCCACCCTCTTGG+AGG | 0.462311 | 3.1:+61590398 | None:intergenic |
| GTGAAATAGCTTACTTGGCC+AGG | 0.463440 | 3.1:+61589890 | None:intergenic |
| TCTTCTTCTTCCTATACCTA+GGG | 0.467526 | 3.1:+61590552 | None:intergenic |
| GGGGCATTTGTTGACATTGG+TGG | 0.468311 | 3.1:-61589242 | MS.gene98277:CDS |
| CATTTAGTCTTCAACTCCTC+CGG | 0.473037 | 3.1:+61590464 | None:intergenic |
| ACAACTTTGCATCTCTATCA+AGG | 0.473424 | 3.1:-61589263 | MS.gene98277:CDS |
| GCCTCCAAGAGGGTGGGAGG+TGG | 0.474279 | 3.1:-61590399 | MS.gene98277:CDS |
| GGCGAAGAGAGTGAGGTTGG+AGG | 0.479470 | 3.1:-61590333 | MS.gene98277:CDS |
| TAATAAGGATTTATTGGAAG+AGG | 0.483601 | 3.1:-61590219 | MS.gene98277:CDS |
| GATGAGAGGTGGTTTGCGGT+GGG | 0.485962 | 3.1:+61590817 | None:intergenic |
| GGGGTAGAGGTGGTGGATGA+CGG | 0.490926 | 3.1:+61590837 | None:intergenic |
| TTCAGCATTCTGAGCAGTCT+TGG | 0.493173 | 3.1:-61580050 | MS.gene98277:CDS |
| GACTAAATGGGCAGGACCGT+TGG | 0.493791 | 3.1:-61590450 | MS.gene98277:CDS |
| GGGGAATTCATCGGAGGTGA+AGG | 0.497266 | 3.1:+61590781 | None:intergenic |
| GGAAATGGGAGTGACGGAAG+AGG | 0.499634 | 3.1:-61590525 | MS.gene98277:CDS |
| GCAACTGGATCGAACGCGGT+TGG | 0.499741 | 3.1:-61590691 | MS.gene98277:CDS |
| CGAACGCGGTTGGGCTCCAT+GGG | 0.501706 | 3.1:-61590681 | MS.gene98277:CDS |
| GGTGAAGTTGGTTCCGCCGA+GGG | 0.501884 | 3.1:-61590426 | MS.gene98277:CDS |
| TTGGAGGAAGGTTTCGTCGA+CGG | 0.503010 | 3.1:+61590760 | None:intergenic |
| AGGACCGTTGGTGGTGAAGT+TGG | 0.505436 | 3.1:-61590438 | MS.gene98277:CDS |
| TACCCATAACAAATCAATTG+TGG | 0.505792 | 3.1:-61580207 | MS.gene98277:CDS |
| ATCTTCTTCTTCCTATACCT+AGG | 0.506020 | 3.1:+61590551 | None:intergenic |
| CAAGGGGCATTTGTTGACAT+TGG | 0.506627 | 3.1:-61589245 | MS.gene98277:CDS |
| TAAAACTCTTGGTCTGCCAT+TGG | 0.506661 | 3.1:-61580363 | MS.gene98277:CDS |
| GAAAACAAGTGTTAAAGAGC+TGG | 0.511285 | 3.1:-61581070 | MS.gene98277:CDS |
| GATTGAGGAAATGGGAGTGA+CGG | 0.512092 | 3.1:-61590531 | MS.gene98277:CDS |
| TAACAAATCAATTGTGGGCA+AGG | 0.516562 | 3.1:-61580201 | MS.gene98277:CDS |
| GTATAGGAAGAAGAAGATTG+AGG | 0.517620 | 3.1:-61590546 | MS.gene98277:CDS |
| GAGCTACCATTCTATTATCC+TGG | 0.521386 | 3.1:-61589908 | MS.gene98277:CDS |
| AAGATTATCACCCTGGGAGG+AGG | 0.522356 | 3.1:-61590071 | MS.gene98277:CDS |
| ACCCATAACAAATCAATTGT+GGG | 0.524675 | 3.1:-61580206 | MS.gene98277:CDS |
| TCCACAAAACGAAGTTCGAT+CGG | 0.527234 | 3.1:+61586864 | None:intergenic |
| CCAAGAATTCAGAAAAGAGC+AGG | 0.528268 | 3.1:-61580247 | MS.gene98277:CDS |
| GTCAGATGAAGGTGTGTTTG+AGG | 0.528608 | 3.1:-61579976 | MS.gene98277:CDS |
| GATTCGCCATCACATAAAAG+TGG | 0.529030 | 3.1:-61588490 | MS.gene98277:CDS |
| TATGGGTGATTAGAAAATAG+AGG | 0.529683 | 3.1:+61586338 | None:intergenic |
| GGGATTGGCCTCCAAGAGGG+TGG | 0.530355 | 3.1:-61590406 | MS.gene98277:CDS |
| TGGAAGGAAGCAAAGGATAG+AGG | 0.530783 | 3.1:-61580583 | MS.gene98277:CDS |
| TGTGTGTTTGGATAGGTATA+AGG | 0.534464 | 3.1:-61590276 | MS.gene98277:CDS |
| AGGGCCGAAGGTTTGGAGGA+AGG | 0.539281 | 3.1:+61590748 | None:intergenic |
| ATGAATATGATTTCATGCAT+TGG | 0.539326 | 3.1:-61580516 | MS.gene98277:CDS |
| CACCCTGGGAGGAGGAAAAG+AGG | 0.541138 | 3.1:-61590063 | MS.gene98277:CDS |
| GAAAAGAGGCAAGGATTACA+AGG | 0.542147 | 3.1:-61590049 | MS.gene98277:CDS |
| CCACAAAACGAAGTTCGATC+GGG | 0.542762 | 3.1:+61586865 | None:intergenic |
| CAGAAAAGAGCAGGAAAGAG+AGG | 0.542840 | 3.1:-61580238 | MS.gene98277:CDS |
| TTGTGGGCAAGGGTACTGTT+TGG | 0.543222 | 3.1:-61580190 | MS.gene98277:CDS |
| TACCTTCCTGGCTCTTCCAA+TGG | 0.543238 | 3.1:+61580347 | None:intergenic |
| ACTTCTAGATTGTCAGATGA+AGG | 0.543319 | 3.1:-61579987 | MS.gene98277:CDS |
| CTGTATCGCTATGACTATTG+GGG | 0.545934 | 3.1:-61580275 | MS.gene98277:CDS |
| CCTCTTGGAGGCCAATCCCT+CGG | 0.551566 | 3.1:+61590410 | None:intergenic |
| TGAAGCTGCCGAAGAAGAAG+AGG | 0.552730 | 3.1:-61580099 | MS.gene98277:CDS |
| GGATTGGCCTCCAAGAGGGT+GGG | 0.552876 | 3.1:-61590405 | MS.gene98277:CDS |
| GGAGGAGTTGAAGACTAAAT+GGG | 0.553677 | 3.1:-61590462 | MS.gene98277:CDS |
| ATTTGCAGCGTGACTGTGGA+AGG | 0.554574 | 3.1:-61586406 | MS.gene98277:intron |
| CGGTGATGAGAGGTGGTTTG+CGG | 0.555409 | 3.1:+61590813 | None:intergenic |
| CGAGGGATTGGCCTCCAAGA+GGG | 0.557359 | 3.1:-61590409 | MS.gene98277:CDS |
| CAGTCTTGGTACTAATGCCT+CGG | 0.561687 | 3.1:-61580036 | MS.gene98277:CDS |
| TTCGTCGACGGGGAATTCAT+CGG | 0.563473 | 3.1:+61590772 | None:intergenic |
| GTAGAGGTGGTGGATGACGG+TGG | 0.566646 | 3.1:+61590840 | None:intergenic |
| CAACTTTGCATCTCTATCAA+GGG | 0.567918 | 3.1:-61589262 | MS.gene98277:CDS |
| AAGTGAAGAGATAAGAATTG+GGG | 0.569311 | 3.1:+61590900 | None:intergenic |
| GAGGACTTTCAGGATCATAC+TGG | 0.569600 | 3.1:+61580297 | None:intergenic |
| ATGAGAGGTGGTTTGCGGTG+GGG | 0.570062 | 3.1:+61590818 | None:intergenic |
| CCTATTCCTAGAAAAGATCC+AGG | 0.570936 | 3.1:-61586380 | MS.gene98277:CDS |
| ATTGCAGATTTGTGTGGGGA+AGG | 0.573789 | 3.1:-61589288 | MS.gene98277:intron |
| TAAATGGGCAGGACCGTTGG+TGG | 0.575306 | 3.1:-61590447 | MS.gene98277:CDS |
| ACTTGGCCAGGATAATAGAA+TGG | 0.577181 | 3.1:+61589902 | None:intergenic |
| CATTGATCAGAGACATCAGC+TGG | 0.577556 | 3.1:-61580468 | MS.gene98277:intron |
| AGAGGCAAGGATTACAAGGA+TGG | 0.582813 | 3.1:-61590045 | MS.gene98277:CDS |
| TCGTCACGGTGAAATATTGG+TGG | 0.584435 | 3.1:+61586679 | None:intergenic |
| AACAAATCAATTGTGGGCAA+GGG | 0.585346 | 3.1:-61580200 | MS.gene98277:CDS |
| GAAACCTTCCTCCAAACCTT+CGG | 0.586186 | 3.1:-61590752 | MS.gene98277:CDS |
| GAGTTGAAGACTAAATGGGC+AGG | 0.587356 | 3.1:-61590458 | MS.gene98277:CDS |
| AGAAGTTCCTCTGAGCTCGC+CGG | 0.588098 | 3.1:-61590603 | MS.gene98277:CDS |
| GGAACCAACTTCACCACCAA+CGG | 0.589853 | 3.1:+61590434 | None:intergenic |
| GAAACTATGGAAGGAAGCAA+AGG | 0.590045 | 3.1:-61580590 | MS.gene98277:CDS |
| ATGACGGTGGAATAAGGGAG+AGG | 0.591429 | 3.1:+61590853 | None:intergenic |
| TGCCATTGGAAGAGCCAGGA+AGG | 0.593450 | 3.1:-61580349 | MS.gene98277:CDS |
| CACCGTAATTTCAACAATGA+CGG | 0.593948 | 3.1:+61588461 | None:intergenic |
| TTTGAAACAGTATAATGAGT+GGG | 0.596431 | 3.1:-61590249 | MS.gene98277:CDS |
| GGCTGCACTTGCTGAGCGTG+AGG | 0.597650 | 3.1:-61581040 | MS.gene98277:intron |
| TAAAATTTGCAGCGTGACTG+TGG | 0.599739 | 3.1:-61586410 | MS.gene98277:intron |
| CTAAAAGCTTCAATCGACTC+CGG | 0.600045 | 3.1:+61590584 | None:intergenic |
| GGAGTGAGAATCTCTTCCCA+TGG | 0.601535 | 3.1:+61590665 | None:intergenic |
| ATTGAAGCGCAATATTGAGA+TGG | 0.601634 | 3.1:-61580539 | MS.gene98277:CDS |
| AGATGGAGGCGAAGAGAGTG+AGG | 0.602803 | 3.1:-61590340 | MS.gene98277:CDS |
| TTAGCGACGGTGATGAGAGG+TGG | 0.602945 | 3.1:+61590806 | None:intergenic |
| TGGTGAAGTTGGTTCCGCCG+AGG | 0.603337 | 3.1:-61590427 | MS.gene98277:CDS |
| CTGATGATGTGTGTTTGGAT+AGG | 0.603876 | 3.1:-61590283 | MS.gene98277:CDS |
| AACCGCGTTCGATCCAGTTG+CGG | 0.604282 | 3.1:+61590693 | None:intergenic |
| GGTCTGCCATTGGAAGAGCC+AGG | 0.606197 | 3.1:-61580353 | MS.gene98277:CDS |
| ATACTAATCCAGATGAATTG+CGG | 0.608071 | 3.1:-61586654 | MS.gene98277:CDS |
| CGCCGCAACTGGATCGAACG+CGG | 0.614662 | 3.1:-61590695 | MS.gene98277:CDS |
| CGTCACGGTGAAATATTGGT+GGG | 0.618017 | 3.1:+61586680 | None:intergenic |
| CTCCTGAAGCCGAATTCGCG+CGG | 0.619073 | 3.1:-61590646 | MS.gene98277:CDS |
| AACTTTGCATCTCTATCAAG+GGG | 0.623804 | 3.1:-61589261 | MS.gene98277:CDS |
| GGAAGCAAAGGATAGAGGTG+AGG | 0.624007 | 3.1:-61580578 | MS.gene98277:CDS |
| CAAGGATTACAAGGATGGCA+TGG | 0.624035 | 3.1:-61590040 | MS.gene98277:intron |
| TGACGGTGGAATAAGGGAGA+GGG | 0.624820 | 3.1:+61590854 | None:intergenic |
| GGAGGAAGGTTTCGTCGACG+GGG | 0.625945 | 3.1:+61590762 | None:intergenic |
| CCGAGGGATTGGCCTCCAAG+AGG | 0.628072 | 3.1:-61590410 | MS.gene98277:CDS |
| CTGGATTAGTATCTTCGTCA+CGG | 0.631090 | 3.1:+61586665 | None:intergenic |
| TAGACCAAGATTATCACCCT+GGG | 0.632469 | 3.1:-61590077 | MS.gene98277:CDS |
| GATTTAGCGACGGTGATGAG+AGG | 0.636266 | 3.1:+61590803 | None:intergenic |
| GCTCCATAAGAAACTATGGA+AGG | 0.637472 | 3.1:-61580599 | MS.gene98277:CDS |
| GAAACAGTATAATGAGTGGG+TGG | 0.642722 | 3.1:-61590246 | MS.gene98277:CDS |
| CTTGGAGGCCAATCCCTCGG+CGG | 0.651664 | 3.1:+61590413 | None:intergenic |
| TGGGAGGAGGAAAAGAGGCA+AGG | 0.652268 | 3.1:-61590058 | MS.gene98277:CDS |
| TTAGACCAAGATTATCACCC+TGG | 0.654734 | 3.1:-61590078 | MS.gene98277:CDS |
| TCGTGAAGCGCATAAGATGG+AGG | 0.656006 | 3.1:-61590354 | MS.gene98277:CDS |
| GTCGACGGGGAATTCATCGG+AGG | 0.657587 | 3.1:+61590775 | None:intergenic |
| ATTCGCCATCACATAAAAGT+GGG | 0.657615 | 3.1:-61588489 | MS.gene98277:CDS |
| AGATCCAGGAGACAAGCCAG+AGG | 0.658333 | 3.1:-61586366 | MS.gene98277:CDS |
| TGTATCGCTATGACTATTGG+GGG | 0.659654 | 3.1:-61580274 | MS.gene98277:CDS |
| GTTGACGAGTATTCAAAGCA+AGG | 0.659920 | 3.1:-61580122 | MS.gene98277:CDS |
| ACATTGGTGGAGTATACGAT+GGG | 0.660404 | 3.1:-61589229 | MS.gene98277:intron |
| TTTCATTGCAGATTTGTGTG+GGG | 0.663073 | 3.1:-61589292 | MS.gene98277:intron |
| ATTAACATGAATTTGATCCG+AGG | 0.664175 | 3.1:+61580019 | None:intergenic |
| ATCGACTCCGGCGAGCTCAG+AGG | 0.664940 | 3.1:+61590596 | None:intergenic |
| GATTAAGGAAGATGTTCCGG+AGG | 0.668281 | 3.1:-61590480 | MS.gene98277:CDS |
| GGAGGTGAAGGATTTAGCGA+CGG | 0.690162 | 3.1:+61590793 | None:intergenic |
| CAATAGTCATAGCGATACAG+AGG | 0.690983 | 3.1:+61580278 | None:intergenic |
| ACCAAGATTATCACCCTGGG+AGG | 0.694247 | 3.1:-61590074 | MS.gene98277:CDS |
| GACATTGGTGGAGTATACGA+TGG | 0.698114 | 3.1:-61589230 | MS.gene98277:CDS |
| GTATCGCTATGACTATTGGG+GGG | 0.713157 | 3.1:-61580273 | MS.gene98277:CDS |
| GCGCGGACGAGTCTCAACGA+AGG | 0.736916 | 3.1:-61590629 | MS.gene98277:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 61579971 | 61590933 | 61579971 | ID=MS.gene98277 |
| chr3.1 | mRNA | 61579971 | 61590933 | 61579971 | ID=MS.gene98277.t1;Parent=MS.gene98277 |
| chr3.1 | exon | 61590208 | 61590933 | 61590208 | ID=MS.gene98277.t1.exon1;Parent=MS.gene98277.t1 |
| chr3.1 | CDS | 61590208 | 61590933 | 61590208 | ID=cds.MS.gene98277.t1;Parent=MS.gene98277.t1 |
| chr3.1 | exon | 61590041 | 61590100 | 61590041 | ID=MS.gene98277.t1.exon2;Parent=MS.gene98277.t1 |
| chr3.1 | CDS | 61590041 | 61590100 | 61590041 | ID=cds.MS.gene98277.t1;Parent=MS.gene98277.t1 |
| chr3.1 | exon | 61589904 | 61589933 | 61589904 | ID=MS.gene98277.t1.exon3;Parent=MS.gene98277.t1 |
| chr3.1 | CDS | 61589904 | 61589933 | 61589904 | ID=cds.MS.gene98277.t1;Parent=MS.gene98277.t1 |
| chr3.1 | exon | 61589230 | 61589303 | 61589230 | ID=MS.gene98277.t1.exon4;Parent=MS.gene98277.t1 |
| chr3.1 | CDS | 61589230 | 61589303 | 61589230 | ID=cds.MS.gene98277.t1;Parent=MS.gene98277.t1 |
| chr3.1 | exon | 61588464 | 61588545 | 61588464 | ID=MS.gene98277.t1.exon5;Parent=MS.gene98277.t1 |
| chr3.1 | CDS | 61588464 | 61588545 | 61588464 | ID=cds.MS.gene98277.t1;Parent=MS.gene98277.t1 |
| chr3.1 | exon | 61586843 | 61586916 | 61586843 | ID=MS.gene98277.t1.exon6;Parent=MS.gene98277.t1 |
| chr3.1 | CDS | 61586843 | 61586916 | 61586843 | ID=cds.MS.gene98277.t1;Parent=MS.gene98277.t1 |
| chr3.1 | exon | 61586654 | 61586720 | 61586654 | ID=MS.gene98277.t1.exon7;Parent=MS.gene98277.t1 |
| chr3.1 | CDS | 61586654 | 61586720 | 61586654 | ID=cds.MS.gene98277.t1;Parent=MS.gene98277.t1 |
| chr3.1 | exon | 61586328 | 61586420 | 61586328 | ID=MS.gene98277.t1.exon8;Parent=MS.gene98277.t1 |
| chr3.1 | CDS | 61586328 | 61586420 | 61586328 | ID=cds.MS.gene98277.t1;Parent=MS.gene98277.t1 |
| chr3.1 | exon | 61584173 | 61584349 | 61584173 | ID=MS.gene98277.t1.exon9;Parent=MS.gene98277.t1 |
| chr3.1 | CDS | 61584173 | 61584349 | 61584173 | ID=cds.MS.gene98277.t1;Parent=MS.gene98277.t1 |
| chr3.1 | exon | 61581041 | 61581091 | 61581041 | ID=MS.gene98277.t1.exon10;Parent=MS.gene98277.t1 |
| chr3.1 | CDS | 61581041 | 61581091 | 61581041 | ID=cds.MS.gene98277.t1;Parent=MS.gene98277.t1 |
| chr3.1 | exon | 61580469 | 61580620 | 61580469 | ID=MS.gene98277.t1.exon11;Parent=MS.gene98277.t1 |
| chr3.1 | CDS | 61580469 | 61580620 | 61580469 | ID=cds.MS.gene98277.t1;Parent=MS.gene98277.t1 |
| chr3.1 | exon | 61579971 | 61580388 | 61579971 | ID=MS.gene98277.t1.exon12;Parent=MS.gene98277.t1 |
| chr3.1 | CDS | 61579971 | 61580388 | 61579971 | ID=cds.MS.gene98277.t1;Parent=MS.gene98277.t1 |
| Gene Sequence |
| Protein sequence |
