Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89326.t1 | XP_013448954.1 | 94.4 | 179 | 10 | 0 | 1 | 179 | 32 | 210 | 3.00E-92 | 347.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89326.t1 | P50162 | 57.1 | 184 | 79 | 0 | 1 | 184 | 35 | 218 | 3.7e-54 | 212.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89326.t1 | A0A072U0P7 | 94.4 | 179 | 10 | 0 | 1 | 179 | 32 | 210 | 2.2e-92 | 347.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene89326 | 0.800055 | 1.72E-48 | -1.69E-46 |
| MS.gene049260 | MS.gene89326 | 0.8154 | 9.43E-52 | -1.69E-46 |
| MS.gene049297 | MS.gene89326 | 0.830756 | 2.46E-55 | -1.69E-46 |
| MS.gene049346 | MS.gene89326 | 0.801898 | 7.24E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene89326 | 0.830141 | 3.47E-55 | -1.69E-46 |
| MS.gene049910 | MS.gene89326 | 0.800421 | 1.45E-48 | -1.69E-46 |
| MS.gene049915 | MS.gene89326 | 0.823785 | 1.15E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene89326 | 0.816315 | 5.89E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene89326 | 0.819636 | 1.05E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene89326 | 0.81122 | 7.81E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene89326 | 0.810916 | 9.08E-51 | -1.69E-46 |
| MS.gene050330 | MS.gene89326 | -0.817243 | 3.65E-52 | -1.69E-46 |
| MS.gene050558 | MS.gene89326 | 0.827209 | 1.78E-54 | -1.69E-46 |
| MS.gene050623 | MS.gene89326 | -0.822169 | 2.74E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene89326 | 0.819192 | 1.32E-52 | -1.69E-46 |
| MS.gene051240 | MS.gene89326 | 0.801837 | 7.46E-49 | -1.69E-46 |
| MS.gene051626 | MS.gene89326 | 0.820944 | 5.25E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene89326 | 0.815805 | 7.66E-52 | -1.69E-46 |
| MS.gene051663 | MS.gene89326 | 0.826376 | 2.81E-54 | -1.69E-46 |
| MS.gene051789 | MS.gene89326 | 0.830914 | 2.25E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene89326 | 0.81713 | 3.87E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene89326 | 0.813367 | 2.65E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene89326 | 0.819456 | 1.15E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene89326 | 0.823157 | 1.61E-53 | -1.69E-46 |
| MS.gene052302 | MS.gene89326 | 0.813587 | 2.37E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene89326 | 0.819435 | 1.16E-52 | -1.69E-46 |
| MS.gene052600 | MS.gene89326 | 0.848088 | 7.66E-60 | -1.69E-46 |
| MS.gene052967 | MS.gene89326 | 0.805908 | 1.06E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene89326 | 0.843336 | 1.49E-58 | -1.69E-46 |
| MS.gene053204 | MS.gene89326 | 0.80886 | 2.52E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene89326 | 0.852231 | 5.29E-61 | -1.69E-46 |
| MS.gene054184 | MS.gene89326 | 0.822071 | 2.88E-53 | -1.69E-46 |
| MS.gene054185 | MS.gene89326 | 0.827221 | 1.76E-54 | -1.69E-46 |
| MS.gene054214 | MS.gene89326 | 0.80683 | 6.80E-50 | -1.69E-46 |
| MS.gene054596 | MS.gene89326 | 0.804447 | 2.15E-49 | -1.69E-46 |
| MS.gene054667 | MS.gene89326 | 0.800936 | 1.14E-48 | -1.69E-46 |
| MS.gene054701 | MS.gene89326 | 0.801578 | 8.43E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene89326 | 0.80823 | 3.43E-50 | -1.69E-46 |
| MS.gene054942 | MS.gene89326 | 0.827798 | 1.28E-54 | -1.69E-46 |
| MS.gene054983 | MS.gene89326 | 0.803496 | 3.39E-49 | -1.69E-46 |
| MS.gene055133 | MS.gene89326 | 0.819294 | 1.25E-52 | -1.69E-46 |
| MS.gene055207 | MS.gene89326 | 0.834761 | 2.49E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene89326 | 0.81666 | 4.93E-52 | -1.69E-46 |
| MS.gene055428 | MS.gene89326 | 0.803776 | 2.97E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene89326 | 0.809291 | 2.03E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene89326 | -0.800529 | 1.38E-48 | -1.69E-46 |
| MS.gene056612 | MS.gene89326 | 0.801033 | 1.09E-48 | -1.69E-46 |
| MS.gene056979 | MS.gene89326 | 0.805724 | 1.16E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene89326 | 0.82864 | 8.04E-55 | -1.69E-46 |
| MS.gene057260 | MS.gene89326 | 0.82281 | 1.94E-53 | -1.69E-46 |
| MS.gene057439 | MS.gene89326 | 0.820986 | 5.13E-53 | -1.69E-46 |
| MS.gene057754 | MS.gene89326 | 0.85913 | 5.12E-63 | -1.69E-46 |
| MS.gene058002 | MS.gene89326 | 0.816704 | 4.82E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene89326 | 0.809604 | 1.74E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene89326 | 0.825972 | 3.50E-54 | -1.69E-46 |
| MS.gene058749 | MS.gene89326 | 0.829066 | 6.34E-55 | -1.69E-46 |
| MS.gene058833 | MS.gene89326 | 0.830655 | 2.60E-55 | -1.69E-46 |
| MS.gene058845 | MS.gene89326 | 0.807541 | 4.81E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene89326 | 0.815 | 1.16E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene89326 | 0.82373 | 1.18E-53 | -1.69E-46 |
| MS.gene059894 | MS.gene89326 | 0.831858 | 1.32E-55 | -1.69E-46 |
| MS.gene060476 | MS.gene89326 | 0.856493 | 3.10E-62 | -1.69E-46 |
| MS.gene061049 | MS.gene89326 | 0.838591 | 2.63E-57 | -1.69E-46 |
| MS.gene061113 | MS.gene89326 | 0.827106 | 1.88E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAAGAGTTAGCAGAATT+TGG | 0.151126 | 7.3:-42034179 | MS.gene89326:CDS |
| TATAATTAAATTACCTTTAG+AGG | 0.172818 | 7.3:+42032010 | None:intergenic |
| CCATTCCAATGCTAAGTTCT+TGG | 0.203591 | 7.3:+42031858 | None:intergenic |
| CTTCTAAAACAATCTGGATA+TGG | 0.305242 | 7.3:-42032098 | MS.gene89326:CDS |
| TGGAAGAGTTAGCAGAATTT+GGG | 0.308742 | 7.3:-42034178 | MS.gene89326:CDS |
| GTATTATCTATGATGGGTTT+AGG | 0.353458 | 7.3:+42032194 | None:intergenic |
| TTCATCAGTATTATCTATGA+TGG | 0.366382 | 7.3:+42032187 | None:intergenic |
| AGATGATATTAACAAATGTT+TGG | 0.374991 | 7.3:-42034126 | MS.gene89326:CDS |
| GCTGCATAGACAGAATTAAA+AGG | 0.377817 | 7.3:+42032032 | None:intergenic |
| GTATTCATATCCTCAATTGC+AGG | 0.377863 | 7.3:-42032068 | MS.gene89326:CDS |
| GTTCTTGGCGCATTGATTCA+TGG | 0.382444 | 7.3:+42031873 | None:intergenic |
| CACCCTCTTCTAAAACAATC+TGG | 0.410514 | 7.3:-42032104 | MS.gene89326:CDS |
| CACTTATAGGTAAACAATGC+TGG | 0.415506 | 7.3:-42032227 | MS.gene89326:intron |
| TTAACAAATGTTTGGAAGAG+TGG | 0.416511 | 7.3:-42034118 | MS.gene89326:CDS |
| ATGGTAACCAGACACAAAAT+TGG | 0.420948 | 7.3:+42032142 | None:intergenic |
| GGCTTTGAGTCCTGCAATTG+AGG | 0.443018 | 7.3:+42032058 | None:intergenic |
| CGTGCTAATGTTGTGGCACC+TGG | 0.445202 | 7.3:-42031820 | MS.gene89326:CDS |
| CGCAGCATTCTCGAAAAGTA+TGG | 0.449584 | 7.3:+42031786 | None:intergenic |
| GAAGATATAACAACTACAAT+TGG | 0.449713 | 7.3:-42032167 | MS.gene89326:CDS |
| TCTGTCTATGCAGCCTCTAA+AGG | 0.465845 | 7.3:-42032023 | MS.gene89326:intron |
| ATCAATCAGGTATGCAATTG+TGG | 0.492239 | 7.3:-42034198 | None:intergenic |
| CAATTGCAGGACTCAAAGCC+TGG | 0.498348 | 7.3:-42032055 | MS.gene89326:CDS |
| CAAGAACTTAGCATTGGAAT+GGG | 0.501708 | 7.3:-42031857 | MS.gene89326:CDS |
| CCAAGAACTTAGCATTGGAA+TGG | 0.503939 | 7.3:-42031858 | MS.gene89326:CDS |
| TCATCAGTATTATCTATGAT+GGG | 0.517347 | 7.3:+42032188 | None:intergenic |
| AGTATGGTCATCACAGCTCC+AGG | 0.534605 | 7.3:+42031802 | None:intergenic |
| ACTTATAGGTAAACAATGCT+GGG | 0.550609 | 7.3:-42032226 | MS.gene89326:intron |
| TTGGAAGAGTGGAAAGGCAA+AGG | 0.565426 | 7.3:-42034107 | MS.gene89326:CDS |
| ATGCGCCAAGAACTTAGCAT+TGG | 0.567165 | 7.3:-42031863 | MS.gene89326:CDS |
| CTTAGCATTGGAATGGGCAA+AGG | 0.572011 | 7.3:-42031851 | MS.gene89326:CDS |
| ACTGTTGCATCGATCTTCGA+TGG | 0.578912 | 7.3:-42034020 | MS.gene89326:CDS |
| ATAGACAGAATTAAAAGGCC+AGG | 0.582444 | 7.3:+42032037 | None:intergenic |
| TAATATTCGTGCTAATGTTG+TGG | 0.582808 | 7.3:-42031827 | MS.gene89326:CDS |
| GGTGTGCAAGTTGACACAAA+TGG | 0.595523 | 7.3:+42032123 | None:intergenic |
| GGAAGAGTTAGCAGAATTTG+GGG | 0.609810 | 7.3:-42034177 | MS.gene89326:CDS |
| AAATGTTTGGAAGAGTGGAA+AGG | 0.633316 | 7.3:-42034113 | MS.gene89326:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATGAAAAACTTAATAT+AGG | - | chr7.3:42032962-42032981 | MS.gene89326:intron | 10.0% |
| !!! | TAAAATTTAACATTTTTCAA+GGG | - | chr7.3:42033573-42033592 | MS.gene89326:intron | 10.0% |
| !! | ACAAAATTGTTCTTAATAAA+TGG | + | chr7.3:42032332-42032351 | None:intergenic | 15.0% |
| !! | ACTTCAAAAATATCAATAAT+TGG | - | chr7.3:42032930-42032949 | MS.gene89326:intron | 15.0% |
| !! | CATTGAATTCATATATAAAA+AGG | + | chr7.3:42033243-42033262 | None:intergenic | 15.0% |
| !! | GATTCATTAAAATTATAAAG+CGG | + | chr7.3:42032234-42032253 | None:intergenic | 15.0% |
| !! | TAAATAATGAATTCTTACAA+AGG | - | chr7.3:42032836-42032855 | MS.gene89326:intron | 15.0% |
| !! | TATAATTAAATTACCTTTAG+AGG | + | chr7.3:42033950-42033969 | None:intergenic | 15.0% |
| !!! | GTAAAATTTAACATTTTTCA+AGG | - | chr7.3:42033572-42033591 | MS.gene89326:intron | 15.0% |
| !! | AAATAGGCTAAAACTTATTA+AGG | - | chr7.3:42032786-42032805 | MS.gene89326:intron | 20.0% |
| !! | AGATGATATTAACAAATGTT+TGG | - | chr7.3:42031831-42031850 | MS.gene89326:CDS | 20.0% |
| !! | TAAAAGGTCACTAATATAAT+TGG | + | chr7.3:42033605-42033624 | None:intergenic | 20.0% |
| !! | TGACCTACTTAAAAATTTAT+AGG | - | chr7.3:42032625-42032644 | MS.gene89326:intron | 20.0% |
| !! | TGATAAAAGTCTATTTATGT+AGG | - | chr7.3:42034059-42034078 | MS.gene89326:CDS | 20.0% |
| !! | TTGGGAAAAAATATCTTAAA+GGG | - | chr7.3:42032012-42032031 | MS.gene89326:intron | 20.0% |
| !! | TTTGGGAAAAAATATCTTAA+AGG | - | chr7.3:42032011-42032030 | MS.gene89326:intron | 20.0% |
| !!! | CATAAAATAGGCTTTTAAAT+AGG | + | chr7.3:42032733-42032752 | None:intergenic | 20.0% |
| !!! | GTAGAGACAATATTAATTTT+AGG | - | chr7.3:42033304-42033323 | MS.gene89326:intron | 20.0% |
| !!! | TATAAATTTTTAAGTAGGTC+AGG | + | chr7.3:42032626-42032645 | None:intergenic | 20.0% |
| !!! | TCAAACTATTAAGTCATTTT+GGG | - | chr7.3:42031994-42032013 | MS.gene89326:intron | 20.0% |
| !!! | TGATTGGTTAAAATTCATAT+GGG | + | chr7.3:42033442-42033461 | None:intergenic | 20.0% |
| !!! | TTAGATAAAATTTTGGTCTT+AGG | - | chr7.3:42033179-42033198 | MS.gene89326:intron | 20.0% |
| !!! | TTGATTGGTTAAAATTCATA+TGG | + | chr7.3:42033443-42033462 | None:intergenic | 20.0% |
| ! | AAATACCTAAAACGTCATTT+AGG | - | chr7.3:42032411-42032430 | MS.gene89326:intron | 25.0% |
| ! | AAATTAATATGGTCTCAACT+AGG | + | chr7.3:42033160-42033179 | None:intergenic | 25.0% |
| ! | AATTAATATGGTCTCAACTA+GGG | + | chr7.3:42033159-42033178 | None:intergenic | 25.0% |
| ! | ATGAAAAACTTAATATAGGC+CGG | - | chr7.3:42032966-42032985 | MS.gene89326:intron | 25.0% |
| ! | ATTCAATGTCTCTTTCAATT+TGG | - | chr7.3:42033255-42033274 | MS.gene89326:intron | 25.0% |
| ! | GAAGATATAACAACTACAAT+TGG | - | chr7.3:42033790-42033809 | MS.gene89326:intron | 25.0% |
| ! | TAATTAACTAAAGCCCATAA+TGG | - | chr7.3:42032546-42032565 | MS.gene89326:intron | 25.0% |
| ! | TCATCAGTATTATCTATGAT+GGG | + | chr7.3:42033772-42033791 | None:intergenic | 25.0% |
| ! | TTCATCAGTATTATCTATGA+TGG | + | chr7.3:42033773-42033792 | None:intergenic | 25.0% |
| !! | CTCAAACTATTAAGTCATTT+TGG | - | chr7.3:42031993-42032012 | MS.gene89326:intron | 25.0% |
| !! | GAGACAATATTAATTTTAGG+AGG | - | chr7.3:42033307-42033326 | MS.gene89326:intron | 25.0% |
| !! | GTCACTAATATAATTGGTTT+AGG | + | chr7.3:42033599-42033618 | None:intergenic | 25.0% |
| !! | TAAAAGCCTATTTTATGCTA+AGG | - | chr7.3:42032736-42032755 | MS.gene89326:intron | 25.0% |
| !!! | AGGCCTATAAATTTTTAAGT+AGG | + | chr7.3:42032631-42032650 | None:intergenic | 25.0% |
| !!! | CTTTGATTCTGAAATTAACA+TGG | - | chr7.3:42033375-42033394 | MS.gene89326:intron | 25.0% |
| !!! | TTTCTTTTGAGTTGCAATTT+TGG | + | chr7.3:42033635-42033654 | None:intergenic | 25.0% |
| AAAAGTCTATTAACCCCATT+AGG | + | chr7.3:42032992-42033011 | None:intergenic | 30.0% | |
| AACACAAGTCTTCATATGAT+TGG | + | chr7.3:42032895-42032914 | None:intergenic | 30.0% | |
| ACTTATAGGTAAACAATGCT+GGG | - | chr7.3:42033731-42033750 | MS.gene89326:intron | 30.0% | |
| ATTAATATGGTCTCAACTAG+GGG | + | chr7.3:42033158-42033177 | None:intergenic | 30.0% | |
| CCTATTTAATTAAACAGACC+AGG | + | chr7.3:42033028-42033047 | None:intergenic | 30.0% | |
| CCTGGTCTGTTTAATTAAAT+AGG | - | chr7.3:42033025-42033044 | MS.gene89326:intron | 30.0% | |
| CTAACATATTTGTGTGCTTT+AGG | + | chr7.3:42032812-42032831 | None:intergenic | 30.0% | |
| GGAAGTAAAATCAATCGATT+TGG | - | chr7.3:42033276-42033295 | MS.gene89326:intron | 30.0% | |
| TAATATTCGTGCTAATGTTG+TGG | - | chr7.3:42034130-42034149 | MS.gene89326:CDS | 30.0% | |
| TCTTAGGTAAAAGTCTGTAT+GGG | - | chr7.3:42033195-42033214 | MS.gene89326:intron | 30.0% | |
| TGAGTGAATTTCTCACTTAT+AGG | - | chr7.3:42033717-42033736 | MS.gene89326:intron | 30.0% | |
| TTAACAAATGTTTGGAAGAG+TGG | - | chr7.3:42031839-42031858 | MS.gene89326:CDS | 30.0% | |
| TTAATTAACATATGCCCGAA+GGG | - | chr7.3:42032174-42032193 | MS.gene89326:CDS | 30.0% | |
| ! | AGCGGCTTATAATTTAAGAT+AGG | + | chr7.3:42032216-42032235 | None:intergenic | 30.0% |
| ! | ATTTTCTGCAATTCAGTTCT+AGG | + | chr7.3:42034018-42034037 | None:intergenic | 30.0% |
| ! | GCGGCTTATAATTTAAGATA+GGG | + | chr7.3:42032215-42032234 | None:intergenic | 30.0% |
| ! | TTTCCATCAACTTTTTACGT+TGG | + | chr7.3:42031918-42031937 | None:intergenic | 30.0% |
| !! | AAAATCAATCGATTTGGTCT+TGG | - | chr7.3:42033282-42033301 | MS.gene89326:intron | 30.0% |
| !! | CTTCTAAAACAATCTGGATA+TGG | - | chr7.3:42033859-42033878 | MS.gene89326:intron | 30.0% |
| !! | GTATTATCTATGATGGGTTT+AGG | + | chr7.3:42033766-42033785 | None:intergenic | 30.0% |
| !! | GTTTTAGCCTATTTAAGAGT+AGG | + | chr7.3:42032780-42032799 | None:intergenic | 30.0% |
| !!! | ATCCAGATTGTTTTAGAAGA+GGG | + | chr7.3:42033858-42033877 | None:intergenic | 30.0% |
| !!! | CAATTTTGGTTTAGGCTAAA+AGG | + | chr7.3:42033621-42033640 | None:intergenic | 30.0% |
| !!! | TATCCAGATTGTTTTAGAAG+AGG | + | chr7.3:42033859-42033878 | None:intergenic | 30.0% |
| !!! | TTGAGTTGCAATTTTGGTTT+AGG | + | chr7.3:42033629-42033648 | None:intergenic | 30.0% |
| AAAATTTATAGGCCTGAGTC+TGG | - | chr7.3:42032636-42032655 | MS.gene89326:intron | 35.0% | |
| AAATGTTTGGAAGAGTGGAA+AGG | - | chr7.3:42031844-42031863 | MS.gene89326:CDS | 35.0% | |
| AATGTTAACAAATGCCCTTC+GGG | + | chr7.3:42032191-42032210 | None:intergenic | 35.0% | |
| ACCTAAAACGTCATTTAGGA+CGG | - | chr7.3:42032415-42032434 | MS.gene89326:intron | 35.0% | |
| ACCTTGTTAATAAACGAGCT+GGG | - | chr7.3:42033070-42033089 | MS.gene89326:intron | 35.0% | |
| ATAGACAGAATTAAAAGGCC+AGG | + | chr7.3:42033923-42033942 | None:intergenic | 35.0% | |
| ATGGTAACCAGACACAAAAT+TGG | + | chr7.3:42033818-42033837 | None:intergenic | 35.0% | |
| ATGTAGGCCTACTCTTAAAT+AGG | - | chr7.3:42032770-42032789 | MS.gene89326:intron | 35.0% | |
| CAATGTTAACAAATGCCCTT+CGG | + | chr7.3:42032192-42032211 | None:intergenic | 35.0% | |
| CACTTATAGGTAAACAATGC+TGG | - | chr7.3:42033730-42033749 | MS.gene89326:intron | 35.0% | |
| CTTAATTAACATATGCCCGA+AGG | - | chr7.3:42032173-42032192 | MS.gene89326:CDS | 35.0% | |
| GCTGCATAGACAGAATTAAA+AGG | + | chr7.3:42033928-42033947 | None:intergenic | 35.0% | |
| GTATTCATATCCTCAATTGC+AGG | - | chr7.3:42033889-42033908 | MS.gene89326:intron | 35.0% | |
| GTCTTAGGTAAAAGTCTGTA+TGG | - | chr7.3:42033194-42033213 | MS.gene89326:intron | 35.0% | |
| TAATTAAACAGACCAGGCTA+AGG | + | chr7.3:42033022-42033041 | None:intergenic | 35.0% | |
| TGACCAACGTAAAAAGTTGA+TGG | - | chr7.3:42031912-42031931 | MS.gene89326:intron | 35.0% | |
| TGGAAGAGTTAGCAGAATTT+GGG | - | chr7.3:42031779-42031798 | MS.gene89326:CDS | 35.0% | |
| TTCAACACACTCTGTTTGAT+TGG | + | chr7.3:42033458-42033477 | None:intergenic | 35.0% | |
| ! | ACTTCATCAGGCCTTTAAAA+AGG | + | chr7.3:42032703-42032722 | None:intergenic | 35.0% |
| ! | ATGTGGGTCCCATATAATTT+TGG | - | chr7.3:42033411-42033430 | MS.gene89326:intron | 35.0% |
| ! | ATTGGTACCAATTTTGTGTC+TGG | - | chr7.3:42033808-42033827 | MS.gene89326:intron | 35.0% |
| ! | CAAGAACTTAGCATTGGAAT+GGG | - | chr7.3:42034100-42034119 | MS.gene89326:CDS | 35.0% |
| ! | TCAGGCTCAAGCTTTTTATA+AGG | + | chr7.3:42033051-42033070 | None:intergenic | 35.0% |
| ATAGGCTTTCAGACTTCATC+AGG | + | chr7.3:42032715-42032734 | None:intergenic | 40.0% | |
| ATGGATCCCAGTAAATCATG+TGG | - | chr7.3:42033394-42033413 | MS.gene89326:intron | 40.0% | |
| CCATTCCAATGCTAAGTTCT+TGG | + | chr7.3:42034102-42034121 | None:intergenic | 40.0% | |
| GACCTTGTTAATAAACGAGC+TGG | - | chr7.3:42033069-42033088 | MS.gene89326:intron | 40.0% | |
| GCCAGACCTTAGCATAAAAT+AGG | + | chr7.3:42032745-42032764 | None:intergenic | 40.0% | |
| GCTCGTTTATTAACAAGGTC+AGG | + | chr7.3:42033069-42033088 | None:intergenic | 40.0% | |
| GGAAGAGTTAGCAGAATTTG+GGG | - | chr7.3:42031780-42031799 | MS.gene89326:CDS | 40.0% | |
| GGGACCCACCAAAATTATAT+GGG | + | chr7.3:42033422-42033441 | None:intergenic | 40.0% | |
| GTGGAAGAGTTAGCAGAATT+TGG | - | chr7.3:42031778-42031797 | MS.gene89326:CDS | 40.0% | |
| TAAGGTCTGGCAATACATGT+AGG | - | chr7.3:42032754-42032773 | MS.gene89326:intron | 40.0% | |
| TCTCGAAAATGAGCCTATGA+CGG | + | chr7.3:42032670-42032689 | None:intergenic | 40.0% | |
| TGGATCCCAGTAAATCATGT+GGG | - | chr7.3:42033395-42033414 | MS.gene89326:intron | 40.0% | |
| TGGGACCCACCAAAATTATA+TGG | + | chr7.3:42033423-42033442 | None:intergenic | 40.0% | |
| TTAATATAGGCCGGCCTAAT+GGG | - | chr7.3:42032975-42032994 | MS.gene89326:intron | 40.0% | |
| ! | AAAACGTCATTTAGGACGGA+GGG | - | chr7.3:42032419-42032438 | MS.gene89326:intron | 40.0% |
| ! | AGCCTATTTAAAGCCTAGCT+CGG | + | chr7.3:42033096-42033115 | None:intergenic | 40.0% |
| ! | CCAAGAACTTAGCATTGGAA+TGG | - | chr7.3:42034099-42034118 | MS.gene89326:CDS | 40.0% |
| ! | GCAAAGGATTTTGTGTGACA+GGG | - | chr7.3:42031866-42031885 | MS.gene89326:CDS | 40.0% |
| ! | GCCTATTTTATGCTAAGGTC+TGG | - | chr7.3:42032741-42032760 | MS.gene89326:intron | 40.0% |
| ! | TAAAACGTCATTTAGGACGG+AGG | - | chr7.3:42032418-42032437 | MS.gene89326:intron | 40.0% |
| ! | TCCGTCCTAAATGACGTTTT+AGG | + | chr7.3:42032419-42032438 | None:intergenic | 40.0% |
| ! | TGGGTCCCATATAATTTTGG+TGG | - | chr7.3:42033414-42033433 | MS.gene89326:intron | 40.0% |
| !! | AGCTAGGCTTTAAATAGGCT+AGG | - | chr7.3:42033096-42033115 | MS.gene89326:intron | 40.0% |
| !! | ATAGGCTCATTTTCGAGATC+TGG | - | chr7.3:42032672-42032691 | MS.gene89326:intron | 40.0% |
| !! | ATCTGGTCTGGCCTTTTTAA+AGG | - | chr7.3:42032689-42032708 | MS.gene89326:intron | 40.0% |
| !! | CACCCTCTTCTAAAACAATC+TGG | - | chr7.3:42033853-42033872 | MS.gene89326:intron | 40.0% |
| !! | CATACTTTTCGAGAATGCTG+CGG | - | chr7.3:42034172-42034191 | MS.gene89326:CDS | 40.0% |
| !! | GGGTCCCATATAATTTTGGT+GGG | - | chr7.3:42033415-42033434 | MS.gene89326:intron | 40.0% |
| !!! | TTTTTAAGTAGGTCAGGCTC+AGG | + | chr7.3:42032620-42032639 | None:intergenic | 40.0% |
| AATATGGTCTCAACTAGGGG+TGG | + | chr7.3:42033155-42033174 | None:intergenic | 45.0% | |
| ACCCCTAGTCTCAACCATTA+TGG | + | chr7.3:42032563-42032582 | None:intergenic | 45.0% | |
| AGCCCATAATGGTTGAGACT+AGG | - | chr7.3:42032557-42032576 | MS.gene89326:intron | 45.0% | |
| ATAATGGTTGAGACTAGGGG+TGG | - | chr7.3:42032562-42032581 | MS.gene89326:intron | 45.0% | |
| ATATGGTCTCAACTAGGGGT+GGG | + | chr7.3:42033154-42033173 | None:intergenic | 45.0% | |
| ATGCGCCAAGAACTTAGCAT+TGG | - | chr7.3:42034094-42034113 | MS.gene89326:CDS | 45.0% | |
| ATGGGACCCACATGATTTAC+TGG | + | chr7.3:42033404-42033423 | None:intergenic | 45.0% | |
| ATTCCTTAACCAATGCCCTG+AGG | + | chr7.3:42032054-42032073 | None:intergenic | 45.0% | |
| CCCATAATGGTTGAGACTAG+GGG | - | chr7.3:42032559-42032578 | MS.gene89326:intron | 45.0% | |
| CCCCTAGTCTCAACCATTAT+GGG | + | chr7.3:42032562-42032581 | None:intergenic | 45.0% | |
| CGCAGCATTCTCGAAAAGTA+TGG | + | chr7.3:42034174-42034193 | None:intergenic | 45.0% | |
| CTCGAAAATGAGCCTATGAC+GGG | + | chr7.3:42032669-42032688 | None:intergenic | 45.0% | |
| CTTAATATAGGCCGGCCTAA+TGG | - | chr7.3:42032974-42032993 | MS.gene89326:intron | 45.0% | |
| CTTGTTAACCAGTGTCCTCA+GGG | - | chr7.3:42032036-42032055 | MS.gene89326:CDS | 45.0% | |
| CTTTAAATAGGCTAGGCCGT+AGG | - | chr7.3:42033103-42033122 | MS.gene89326:intron | 45.0% | |
| GCCCAGCTCGTTTATTAACA+AGG | + | chr7.3:42033074-42033093 | None:intergenic | 45.0% | |
| GCCCATAATGGTTGAGACTA+GGG | - | chr7.3:42032558-42032577 | MS.gene89326:intron | 45.0% | |
| GTCTATTAACCCCATTAGGC+CGG | + | chr7.3:42032988-42033007 | None:intergenic | 45.0% | |
| TAATATAGGCCGGCCTAATG+GGG | - | chr7.3:42032976-42032995 | MS.gene89326:intron | 45.0% | |
| TCTGTCTATGCAGCCTCTAA+AGG | - | chr7.3:42033934-42033953 | MS.gene89326:intron | 45.0% | |
| TCTTGTTAACCAGTGTCCTC+AGG | - | chr7.3:42032035-42032054 | MS.gene89326:CDS | 45.0% | |
| TGGGACCCACATGATTTACT+GGG | + | chr7.3:42033403-42033422 | None:intergenic | 45.0% | |
| TTGAGACTAGGGGTGGAAAT+GGG | - | chr7.3:42032569-42032588 | MS.gene89326:intron | 45.0% | |
| TTGGAAGAGTGGAAAGGCAA+AGG | - | chr7.3:42031850-42031869 | MS.gene89326:CDS | 45.0% | |
| ! | ACTGTTGCATCGATCTTCGA+TGG | - | chr7.3:42031937-42031956 | MS.gene89326:intron | 45.0% |
| ! | CTTAGCATTGGAATGGGCAA+AGG | - | chr7.3:42034106-42034125 | MS.gene89326:CDS | 45.0% |
| ! | GGCAAAGGATTTTGTGTGAC+AGG | - | chr7.3:42031865-42031884 | MS.gene89326:CDS | 45.0% |
| ! | GGTGTGCAAGTTGACACAAA+TGG | + | chr7.3:42033837-42033856 | None:intergenic | 45.0% |
| !! | ATGAGCCTATGACGGGTAAT+AGG | + | chr7.3:42032662-42032681 | None:intergenic | 45.0% |
| !! | CTCATTTTCGAGATCTGGTC+TGG | - | chr7.3:42032677-42032696 | MS.gene89326:intron | 45.0% |
| !! | GTTCTTGGCGCATTGATTCA+TGG | + | chr7.3:42034087-42034106 | None:intergenic | 45.0% |
| !!! | CTTTTTTGCAAGCCTTAGCC+TGG | - | chr7.3:42033007-42033026 | MS.gene89326:intron | 45.0% |
| !!! | AAAATATTTTAGTTTTTTTA+GGG | - | chr7.3:42032490-42032509 | MS.gene89326:intron | 5.0% |
| !!! | AATTTTATCTAAAATTAATA+TGG | + | chr7.3:42033171-42033190 | None:intergenic | 5.0% |
| !!! | ATTAATTTTAGATAAAATTT+TGG | - | chr7.3:42033172-42033191 | MS.gene89326:intron | 5.0% |
| !!! | TAAAATATTTTAGTTTTTTT+AGG | - | chr7.3:42032489-42032508 | MS.gene89326:intron | 5.0% |
| AGTATGGTCATCACAGCTCC+AGG | + | chr7.3:42034158-42034177 | None:intergenic | 50.0% | |
| CAATTGCAGGACTCAAAGCC+TGG | - | chr7.3:42033902-42033921 | MS.gene89326:intron | 50.0% | |
| GTTGAGACTAGGGGTGGAAA+TGG | - | chr7.3:42032568-42032587 | MS.gene89326:intron | 50.0% | |
| TCTGGCCTATTACCCGTCAT+AGG | - | chr7.3:42032654-42032673 | MS.gene89326:intron | 50.0% | |
| !! | GGCCGAGCTAGGCTTTAAAT+AGG | - | chr7.3:42033091-42033110 | MS.gene89326:intron | 50.0% |
| !! | GGCTTTGAGTCCTGCAATTG+AGG | + | chr7.3:42033902-42033921 | None:intergenic | 50.0% |
| !! | TGTCCTCAGGGCATTGGTTA+AGG | - | chr7.3:42032048-42032067 | MS.gene89326:CDS | 50.0% |
| AACCAATGCCCTGAGGACAC+TGG | + | chr7.3:42032047-42032066 | None:intergenic | 55.0% | |
| AACCAGTGTCCTCAGGGCAT+TGG | - | chr7.3:42032042-42032061 | MS.gene89326:CDS | 55.0% | |
| ACGGGTAATAGGCCAGACTC+AGG | + | chr7.3:42032651-42032670 | None:intergenic | 55.0% | |
| CGTGCTAATGTTGTGGCACC+TGG | - | chr7.3:42034137-42034156 | MS.gene89326:CDS | 55.0% | |
| TCTCAACTAGGGGTGGGAAC+AGG | + | chr7.3:42033148-42033167 | None:intergenic | 55.0% | |
| ! | ACTAGGGGTGGAAATGGGCT+AGG | - | chr7.3:42032574-42032593 | MS.gene89326:intron | 55.0% |
| GGCTCAGGCCTTACAAAGCC+CGG | + | chr7.3:42032605-42032624 | None:intergenic | 60.0% | |
| TAAACGAGCTGGGCCGAGCT+AGG | - | chr7.3:42033080-42033099 | MS.gene89326:intron | 60.0% | |
| AACAGGCCAGACCGTCCGAC+AGG | + | chr7.3:42033131-42033150 | None:intergenic | 65.0% | |
| ACAGGCCAGACCGTCCGACA+GGG | + | chr7.3:42033130-42033149 | None:intergenic | 65.0% | |
| AGGCCTTACAAAGCCCGGCC+CGG | + | chr7.3:42032600-42032619 | None:intergenic | 65.0% | |
| !! | GGGGTGGAAATGGGCTAGGC+CGG | - | chr7.3:42032578-42032597 | MS.gene89326:intron | 65.0% |
| !! | GGGTGGAAATGGGCTAGGCC+GGG | - | chr7.3:42032579-42032598 | MS.gene89326:intron | 65.0% |
| CAGGCCAGACCGTCCGACAG+GGG | + | chr7.3:42033129-42033148 | None:intergenic | 70.0% | |
| GACCGTCCGACAGGGGCCTA+CGG | + | chr7.3:42033122-42033141 | None:intergenic | 70.0% | |
| GCTAGGCCGTAGGCCCCTGT+CGG | - | chr7.3:42033113-42033132 | MS.gene89326:intron | 70.0% | |
| TAGGCCCCTGTCGGACGGTC+TGG | - | chr7.3:42033122-42033141 | MS.gene89326:intron | 70.0% | |
| ! | AGGCCGGGCCGGGCTTTGTA+AGG | - | chr7.3:42032594-42032613 | MS.gene89326:intron | 70.0% |
| !! | GAAATGGGCTAGGCCGGGCC+GGG | - | chr7.3:42032584-42032603 | MS.gene89326:intron | 70.0% |
| !! | GGAAATGGGCTAGGCCGGGC+CGG | - | chr7.3:42032583-42032602 | MS.gene89326:intron | 70.0% |
| GGCCGTAGGCCCCTGTCGGA+CGG | - | chr7.3:42033117-42033136 | MS.gene89326:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 42031768 | 42034211 | 42031768 | ID=MS.gene89326 |
| chr7.3 | mRNA | 42031768 | 42034211 | 42031768 | ID=MS.gene89326.t1;Parent=MS.gene89326 |
| chr7.3 | exon | 42034004 | 42034211 | 42034004 | ID=MS.gene89326.t1.exon1;Parent=MS.gene89326.t1 |
| chr7.3 | CDS | 42034004 | 42034211 | 42034004 | ID=cds.MS.gene89326.t1;Parent=MS.gene89326.t1 |
| chr7.3 | exon | 42032024 | 42032240 | 42032024 | ID=MS.gene89326.t1.exon2;Parent=MS.gene89326.t1 |
| chr7.3 | CDS | 42032024 | 42032240 | 42032024 | ID=cds.MS.gene89326.t1;Parent=MS.gene89326.t1 |
| chr7.3 | exon | 42031768 | 42031898 | 42031768 | ID=MS.gene89326.t1.exon3;Parent=MS.gene89326.t1 |
| chr7.3 | CDS | 42031768 | 42031898 | 42031768 | ID=cds.MS.gene89326.t1;Parent=MS.gene89326.t1 |
| Gene Sequence |
| Protein sequence |
