Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068549.t1 | XP_013468302.1 | 94.2 | 223 | 13 | 0 | 46 | 268 | 133 | 355 | 4.70E-110 | 407.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068549.t1 | Q9LS48 | 45.1 | 102 | 53 | 1 | 164 | 265 | 217 | 315 | 4.4e-16 | 86.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068549.t1 | A0A072VJX8 | 94.2 | 223 | 13 | 0 | 46 | 268 | 133 | 355 | 3.4e-110 | 407.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene068549 | 0.866298 | 3.16E-65 | -1.69E-46 |
| MS.gene049322 | MS.gene068549 | 0.80361 | 3.21E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene068549 | 0.802789 | 4.75E-49 | -1.69E-46 |
| MS.gene04987 | MS.gene068549 | 0.807115 | 5.92E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene068549 | 0.819461 | 1.15E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene068549 | 0.839478 | 1.55E-57 | -1.69E-46 |
| MS.gene050228 | MS.gene068549 | 0.839248 | 1.78E-57 | -1.69E-46 |
| MS.gene050277 | MS.gene068549 | 0.833842 | 4.23E-56 | -1.69E-46 |
| MS.gene050303 | MS.gene068549 | 0.86131 | 1.12E-63 | -1.69E-46 |
| MS.gene050330 | MS.gene068549 | -0.809687 | 1.67E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene068549 | -0.862621 | 4.45E-64 | -1.69E-46 |
| MS.gene050642 | MS.gene068549 | 0.884015 | 2.75E-71 | -1.69E-46 |
| MS.gene051257 | MS.gene068549 | 0.811848 | 5.70E-51 | -1.69E-46 |
| MS.gene051349 | MS.gene068549 | 0.822259 | 2.61E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene068549 | 0.828136 | 1.06E-54 | -1.69E-46 |
| MS.gene051633 | MS.gene068549 | 0.843007 | 1.83E-58 | -1.69E-46 |
| MS.gene051662 | MS.gene068549 | 0.853618 | 2.12E-61 | -1.69E-46 |
| MS.gene051663 | MS.gene068549 | 0.817643 | 2.96E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene068549 | 0.832891 | 7.30E-56 | -1.69E-46 |
| MS.gene052048 | MS.gene068549 | -0.808634 | 2.81E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene068549 | 0.874349 | 7.24E-68 | -1.69E-46 |
| MS.gene052286 | MS.gene068549 | 0.824407 | 8.21E-54 | -1.69E-46 |
| MS.gene052302 | MS.gene068549 | 0.860645 | 1.79E-63 | -1.69E-46 |
| MS.gene052309 | MS.gene068549 | -0.865286 | 6.59E-65 | -1.69E-46 |
| MS.gene052376 | MS.gene068549 | 0.865958 | 4.05E-65 | -1.69E-46 |
| MS.gene052600 | MS.gene068549 | 0.883389 | 4.68E-71 | -1.69E-46 |
| MS.gene052856 | MS.gene068549 | 0.827518 | 1.50E-54 | -1.69E-46 |
| MS.gene052858 | MS.gene068549 | 0.808868 | 2.51E-50 | -1.69E-46 |
| MS.gene052860 | MS.gene068549 | 0.805084 | 1.58E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene068549 | 0.810873 | 9.28E-51 | -1.69E-46 |
| MS.gene053294 | MS.gene068549 | 0.800153 | 1.65E-48 | -1.69E-46 |
| MS.gene053836 | MS.gene068549 | 0.817933 | 2.55E-52 | -1.69E-46 |
| MS.gene054701 | MS.gene068549 | 0.80984 | 1.55E-50 | -1.69E-46 |
| MS.gene054942 | MS.gene068549 | 0.87315 | 1.84E-67 | -1.69E-46 |
| MS.gene055808 | MS.gene068549 | 0.807525 | 4.85E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene068549 | -0.800382 | 1.48E-48 | -1.69E-46 |
| MS.gene056091 | MS.gene068549 | 0.811982 | 5.33E-51 | -1.69E-46 |
| MS.gene056552 | MS.gene068549 | 0.804877 | 1.75E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene068549 | 0.82842 | 9.08E-55 | -1.69E-46 |
| MS.gene056979 | MS.gene068549 | 0.825222 | 5.27E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene068549 | 0.800326 | 1.52E-48 | -1.69E-46 |
| MS.gene057079 | MS.gene068549 | 0.830159 | 3.44E-55 | -1.69E-46 |
| MS.gene057260 | MS.gene068549 | 0.82459 | 7.43E-54 | -1.69E-46 |
| MS.gene057439 | MS.gene068549 | 0.801027 | 1.09E-48 | -1.69E-46 |
| MS.gene057555 | MS.gene068549 | 0.832731 | 8.00E-56 | -1.69E-46 |
| MS.gene058084 | MS.gene068549 | 0.801726 | 7.86E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene068549 | 0.816742 | 4.73E-52 | -1.69E-46 |
| MS.gene058200 | MS.gene068549 | 0.838554 | 2.68E-57 | -1.69E-46 |
| MS.gene058201 | MS.gene068549 | 0.857016 | 2.18E-62 | -1.69E-46 |
| MS.gene058238 | MS.gene068549 | 0.816427 | 5.56E-52 | -1.69E-46 |
| MS.gene058399 | MS.gene068549 | 0.814555 | 1.45E-51 | -1.69E-46 |
| MS.gene058661 | MS.gene068549 | -0.800217 | 1.60E-48 | -1.69E-46 |
| MS.gene058749 | MS.gene068549 | 0.82069 | 6.00E-53 | -1.69E-46 |
| MS.gene058833 | MS.gene068549 | 0.817693 | 2.89E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene068549 | 0.800302 | 1.54E-48 | -1.69E-46 |
| MS.gene059249 | MS.gene068549 | 0.81964 | 1.04E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene068549 | 0.82596 | 3.52E-54 | -1.69E-46 |
| MS.gene059569 | MS.gene068549 | 0.801459 | 8.92E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene068549 | 0.832435 | 9.47E-56 | -1.69E-46 |
| MS.gene060165 | MS.gene068549 | 0.846719 | 1.82E-59 | -1.69E-46 |
| MS.gene060297 | MS.gene068549 | 0.82519 | 5.36E-54 | -1.69E-46 |
| MS.gene060586 | MS.gene068549 | 0.815471 | 9.09E-52 | -1.69E-46 |
| MS.gene060619 | MS.gene068549 | 0.852944 | 3.31E-61 | -1.69E-46 |
| MS.gene061040 | MS.gene068549 | -0.837274 | 5.73E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068549.t1 | MTR_1g067600 | 94.170 | 223 | 13 | 0 | 46 | 268 | 133 | 355 | 1.49e-141 | 402 |
| MS.gene068549.t1 | MTR_7g100328 | 49.784 | 231 | 105 | 2 | 31 | 250 | 101 | 331 | 1.17e-75 | 234 |
| MS.gene068549.t1 | MTR_3g095070 | 37.306 | 193 | 116 | 3 | 59 | 249 | 119 | 308 | 1.76e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068549.t1 | AT3G53560 | 45.852 | 229 | 115 | 2 | 46 | 265 | 106 | 334 | 4.46e-66 | 209 |
| MS.gene068549.t1 | AT3G53560 | 45.852 | 229 | 115 | 2 | 46 | 265 | 154 | 382 | 1.84e-65 | 209 |
| MS.gene068549.t1 | AT2G37400 | 48.792 | 207 | 103 | 1 | 57 | 260 | 123 | 329 | 8.40e-65 | 206 |
| MS.gene068549.t1 | AT5G02590 | 45.128 | 195 | 106 | 1 | 57 | 251 | 122 | 315 | 4.36e-57 | 186 |
| MS.gene068549.t1 | AT3G09490 | 38.462 | 195 | 120 | 0 | 51 | 245 | 100 | 294 | 3.35e-37 | 134 |
| MS.gene068549.t1 | AT3G18420 | 36.986 | 219 | 126 | 4 | 51 | 265 | 105 | 315 | 6.39e-34 | 125 |
| MS.gene068549.t1 | AT4G39470 | 32.323 | 198 | 131 | 2 | 55 | 251 | 123 | 318 | 9.34e-30 | 114 |
Find 36 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAATGCACTTCGGTCTT+TGG | 0.233815 | 1.2:-51008543 | MS.gene068549:CDS |
| TCCTCAAAATAATCTTTATA+AGG | 0.293256 | 1.2:+51008008 | None:intergenic |
| ATATCAAAGATTTCATTTCA+TGG | 0.342358 | 1.2:-51009328 | MS.gene068549:CDS |
| GGTGATGGAAGAGGATTATT+CGG | 0.343501 | 1.2:-51008183 | MS.gene068549:CDS |
| ACAACACCCTGACACAAATA+AGG | 0.396662 | 1.2:+51008107 | None:intergenic |
| TCATAACGGTGAACATGAAT+TGG | 0.408524 | 1.2:-51008405 | MS.gene068549:CDS |
| GAAGTATAGAAGACTTGTTC+CGG | 0.415845 | 1.2:-51008039 | MS.gene068549:CDS |
| CGATAAGCTTCCGAGCTAAA+CGG | 0.421270 | 1.2:+51008347 | None:intergenic |
| CCGAAGTGCATTTGCATCGT+TGG | 0.434659 | 1.2:+51008550 | None:intergenic |
| GGATTATTCGGGTGCATTGA+AGG | 0.439105 | 1.2:-51008171 | MS.gene068549:CDS |
| TTAGTTTGTTCTGATGAAAG+AGG | 0.472531 | 1.2:-51009368 | None:intergenic |
| ACGATTAATCGAACTTGAAC+CGG | 0.485876 | 1.2:-51008468 | MS.gene068549:CDS |
| TGCACTTCGGTCTTTGGTCG+AGG | 0.493633 | 1.2:-51008537 | MS.gene068549:CDS |
| GAACATGAATTGGCTAAGAA+AGG | 0.494151 | 1.2:-51008395 | MS.gene068549:CDS |
| TTTAGACCTTATTTGTGTCA+GGG | 0.502448 | 1.2:-51008113 | MS.gene068549:CDS |
| GTGTTGTTTATAGTTTGCTT+AGG | 0.504927 | 1.2:-51008091 | MS.gene068549:CDS |
| TCTTTATAAGGATGACTCTC+CGG | 0.523440 | 1.2:+51008020 | None:intergenic |
| TTGTCGAAGAAGCTAGAGAA+AGG | 0.525668 | 1.2:-51007972 | MS.gene068549:CDS |
| GTGATGGAAGAGGATTATTC+GGG | 0.533262 | 1.2:-51008182 | MS.gene068549:CDS |
| GGGTGCATTGAAGGTGTATG+AGG | 0.551918 | 1.2:-51008162 | MS.gene068549:CDS |
| AGTAACAAATCAAATTCCTC+CGG | 0.565843 | 1.2:+51008449 | None:intergenic |
| AAGCGAAGCGATACGTGTTG+TGG | 0.566598 | 1.2:-51008492 | MS.gene068549:CDS |
| TCACATTTGCACAGTCATAA+CGG | 0.567156 | 1.2:-51008419 | MS.gene068549:CDS |
| TAGCTTCTTCGACAAAACCT+TGG | 0.570727 | 1.2:+51007980 | None:intergenic |
| GCAGGTGAAGGTGATGGAAG+AGG | 0.577382 | 1.2:-51008192 | MS.gene068549:CDS |
| AATTGCGCAGGTGAAGGTGA+TGG | 0.587282 | 1.2:-51008198 | MS.gene068549:CDS |
| TTCGGAGTTGAAAGAGCCAA+TGG | 0.593450 | 1.2:-51008306 | MS.gene068549:CDS |
| GCAGCAAGATCCGTTTAGCT+CGG | 0.604756 | 1.2:-51008357 | MS.gene068549:CDS |
| GAGTTGAAAGAGCCAATGGA+GGG | 0.607803 | 1.2:-51008302 | MS.gene068549:CDS |
| TCGAAGAAGCTAGAGAAAGG+AGG | 0.633094 | 1.2:-51007969 | MS.gene068549:CDS |
| CCAACGATGCAAATGCACTT+CGG | 0.633763 | 1.2:-51008550 | MS.gene068549:CDS |
| GGAGTTGAAAGAGCCAATGG+AGG | 0.637662 | 1.2:-51008303 | MS.gene068549:CDS |
| TTTAGCTCGGAAGCTTATCG+CGG | 0.648904 | 1.2:-51008344 | MS.gene068549:CDS |
| AAATAAGGTCTAAAATCACT+CGG | 0.653706 | 1.2:+51008122 | None:intergenic |
| ATTAATCGAACTTGAACCGG+AGG | 0.672279 | 1.2:-51008465 | MS.gene068549:CDS |
| GGTGTATGAGGAAATTGTGA+AGG | 0.676790 | 1.2:-51008150 | MS.gene068549:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATTCTAAATTCT+AGG | - | chr1.2:51008002-51008021 | MS.gene068549:CDS | 10.0% |
| !! | TGATATTATAGTATTATTTA+CGG | + | chr1.2:51008247-51008266 | None:intergenic | 10.0% |
| !! | ATAAATCCATAAAATATGTA+AGG | + | chr1.2:51008141-51008160 | None:intergenic | 15.0% |
| !! | AAAAAATATGTTGCCTTTAA+CGG | + | chr1.2:51008091-51008110 | None:intergenic | 20.0% |
| !! | AATACTATAATATCAGAACA+GGG | - | chr1.2:51008252-51008271 | MS.gene068549:CDS | 20.0% |
| !! | ACAACATATATATAGTGAAA+AGG | - | chr1.2:51008195-51008214 | MS.gene068549:CDS | 20.0% |
| !! | ATATCAAAGATTTCATTTCA+TGG | - | chr1.2:51007974-51007993 | MS.gene068549:CDS | 20.0% |
| !! | CAACATATATATAGTGAAAA+GGG | - | chr1.2:51008196-51008215 | MS.gene068549:CDS | 20.0% |
| !! | TAATACTATAATATCAGAAC+AGG | - | chr1.2:51008251-51008270 | MS.gene068549:CDS | 20.0% |
| !! | TCCTCAAAATAATCTTTATA+AGG | + | chr1.2:51009297-51009316 | None:intergenic | 20.0% |
| !!! | GTTTTTTGAAGAGAAAAAAA+TGG | - | chr1.2:51009053-51009072 | MS.gene068549:intron | 20.0% |
| !!! | TCCTTATAAAGATTATTTTG+AGG | - | chr1.2:51009293-51009312 | MS.gene068549:CDS | 20.0% |
| !!! | TTCTTTATTTGATAGCTTTT+CGG | + | chr1.2:51008695-51008714 | None:intergenic | 20.0% |
| ! | ATACTATAATATCAGAACAG+GGG | - | chr1.2:51008253-51008272 | MS.gene068549:CDS | 25.0% |
| ! | TTAGCTCAATTGAAATGAAA+TGG | + | chr1.2:51008171-51008190 | None:intergenic | 25.0% |
| !! | AAATAAGGTCTAAAATCACT+CGG | + | chr1.2:51009183-51009202 | None:intergenic | 25.0% |
| !! | TTGTTGTTGTTGTTGTTATT+TGG | + | chr1.2:51008466-51008485 | None:intergenic | 25.0% |
| !!! | AAAGGCAACATATTTTTTTG+TGG | - | chr1.2:51008093-51008112 | MS.gene068549:CDS | 25.0% |
| AGTAACAAATCAAATTCCTC+CGG | + | chr1.2:51008856-51008875 | None:intergenic | 30.0% | |
| CATAAAATATGTAAGGTCTG+AGG | + | chr1.2:51008134-51008153 | None:intergenic | 30.0% | |
| ! | AATTTGGGAGAAAGAGTTTT+GGG | + | chr1.2:51008506-51008525 | None:intergenic | 30.0% |
| ! | CTCAGACCTTACATATTTTA+TGG | - | chr1.2:51008132-51008151 | MS.gene068549:CDS | 30.0% |
| ! | TGGTGATAAAGATAGGTTTT+GGG | + | chr1.2:51008334-51008353 | None:intergenic | 30.0% |
| ! | TTTAGACCTTATTTGTGTCA+GGG | - | chr1.2:51009189-51009208 | MS.gene068549:intron | 30.0% |
| !! | ATTTAAGCTTTTAATTGCGC+AGG | - | chr1.2:51009092-51009111 | MS.gene068549:intron | 30.0% |
| !! | GTGTTGTTTATAGTTTGCTT+AGG | - | chr1.2:51009211-51009230 | MS.gene068549:intron | 30.0% |
| !! | TTTTAGACCTTATTTGTGTC+AGG | - | chr1.2:51009188-51009207 | MS.gene068549:intron | 30.0% |
| !!! | AATGGAGGGTTTTTTGAATA+GGG | - | chr1.2:51009014-51009033 | MS.gene068549:intron | 30.0% |
| !!! | AGTTTTGGGGTTTTTGAAAA+GGG | + | chr1.2:51008492-51008511 | None:intergenic | 30.0% |
| !!! | GTTAAGGGTTTTGAGAATTT+GGG | + | chr1.2:51008521-51008540 | None:intergenic | 30.0% |
| !!! | TTTTTTGAATAGGGTTGATG+AGG | - | chr1.2:51009023-51009042 | MS.gene068549:intron | 30.0% |
| AAAAAATGGAGTCAGAAGCT+AGG | - | chr1.2:51009067-51009086 | MS.gene068549:intron | 35.0% | |
| AAAAATGGAGTCAGAAGCTA+GGG | - | chr1.2:51009068-51009087 | MS.gene068549:intron | 35.0% | |
| ACGATTAATCGAACTTGAAC+CGG | - | chr1.2:51008834-51008853 | MS.gene068549:intron | 35.0% | |
| AGCAAAAAACAACGAAAGCA+AGG | - | chr1.2:51008054-51008073 | MS.gene068549:CDS | 35.0% | |
| CTATTCAAAAAACCCTCCAT+TGG | + | chr1.2:51009015-51009034 | None:intergenic | 35.0% | |
| GAACATGAATTGGCTAAGAA+AGG | - | chr1.2:51008907-51008926 | MS.gene068549:intron | 35.0% | |
| TCACATTTGCACAGTCATAA+CGG | - | chr1.2:51008883-51008902 | MS.gene068549:intron | 35.0% | |
| TCATAACGGTGAACATGAAT+TGG | - | chr1.2:51008897-51008916 | MS.gene068549:intron | 35.0% | |
| TCTTTATAAGGATGACTCTC+CGG | + | chr1.2:51009285-51009304 | None:intergenic | 35.0% | |
| TTTGATGGAGGGTAGTAATA+AGG | + | chr1.2:51008431-51008450 | None:intergenic | 35.0% | |
| ! | ATTTGGGAGAAAGAGTTTTG+GGG | + | chr1.2:51008505-51008524 | None:intergenic | 35.0% |
| ! | GAAGTATAGAAGACTTGTTC+CGG | - | chr1.2:51009263-51009282 | MS.gene068549:CDS | 35.0% |
| ! | GAATTTGGGAGAAAGAGTTT+TGG | + | chr1.2:51008507-51008526 | None:intergenic | 35.0% |
| ! | GGTGATAAAGATAGGTTTTG+GGG | + | chr1.2:51008333-51008352 | None:intergenic | 35.0% |
| ! | GTGGTGATAAAGATAGGTTT+TGG | + | chr1.2:51008335-51008354 | None:intergenic | 35.0% |
| ! | TTTGGGGAGAGAATTCATTT+TGG | + | chr1.2:51008317-51008336 | None:intergenic | 35.0% |
| !! | ATTTGATAGCTTTTCGGTTG+CGG | + | chr1.2:51008689-51008708 | None:intergenic | 35.0% |
| !! | GTTGTTGTTGTTATTTGGAG+AGG | + | chr1.2:51008461-51008480 | None:intergenic | 35.0% |
| !!! | ACATATTTTTTTGTGGTGGC+CGG | - | chr1.2:51008100-51008119 | MS.gene068549:CDS | 35.0% |
| !!! | CAATGGAGGGTTTTTTGAAT+AGG | - | chr1.2:51009013-51009032 | MS.gene068549:intron | 35.0% |
| !!! | GAGAGAATTCATTTTGGCTA+AGG | + | chr1.2:51008311-51008330 | None:intergenic | 35.0% |
| !!! | GAGTTTTGGGGTTTTTGAAA+AGG | + | chr1.2:51008493-51008512 | None:intergenic | 35.0% |
| !!! | GGCAACATATTTTTTTGTGG+TGG | - | chr1.2:51008096-51008115 | MS.gene068549:CDS | 35.0% |
| !!! | GGTTAAGGGTTTTGAGAATT+TGG | + | chr1.2:51008522-51008541 | None:intergenic | 35.0% |
| !!! | TTATTTTGAGGATAACGCCA+AGG | - | chr1.2:51009305-51009324 | MS.gene068549:CDS | 35.0% |
| AAGAAGAGAATGAGTGAGAG+GGG | + | chr1.2:51008402-51008421 | None:intergenic | 40.0% | |
| ACAACACCCTGACACAAATA+AGG | + | chr1.2:51009198-51009217 | None:intergenic | 40.0% | |
| AGAGAGGTGGTGATAAAGAT+AGG | + | chr1.2:51008341-51008360 | None:intergenic | 40.0% | |
| AGAGTTTAGGGAATGAAGAG+TGG | + | chr1.2:51008375-51008394 | None:intergenic | 40.0% | |
| ATGGAGGGTAGTAATAAGGA+GGG | + | chr1.2:51008427-51008446 | None:intergenic | 40.0% | |
| ATTAATCGAACTTGAACCGG+AGG | - | chr1.2:51008837-51008856 | MS.gene068549:intron | 40.0% | |
| GAAGAAGAGAATGAGTGAGA+GGG | + | chr1.2:51008403-51008422 | None:intergenic | 40.0% | |
| GGTGTATGAGGAAATTGTGA+AGG | - | chr1.2:51009152-51009171 | MS.gene068549:intron | 40.0% | |
| TAGCTTCTTCGACAAAACCT+TGG | + | chr1.2:51009325-51009344 | None:intergenic | 40.0% | |
| TGAAGAAGAGAATGAGTGAG+AGG | + | chr1.2:51008404-51008423 | None:intergenic | 40.0% | |
| TTGTCGAAGAAGCTAGAGAA+AGG | - | chr1.2:51009330-51009349 | MS.gene068549:CDS | 40.0% | |
| ! | GTGATGGAAGAGGATTATTC+GGG | - | chr1.2:51009120-51009139 | MS.gene068549:intron | 40.0% |
| !! | GGTGATGGAAGAGGATTATT+CGG | - | chr1.2:51009119-51009138 | MS.gene068549:intron | 40.0% |
| AGGTGAGGTAAAGGGGTTAA+GGG | + | chr1.2:51008536-51008555 | None:intergenic | 45.0% | |
| CCAACGATGCAAATGCACTT+CGG | - | chr1.2:51008752-51008771 | MS.gene068549:intron | 45.0% | |
| CGATAAGCTTCCGAGCTAAA+CGG | + | chr1.2:51008958-51008977 | None:intergenic | 45.0% | |
| GAGTTGAAAGAGCCAATGGA+GGG | - | chr1.2:51009000-51009019 | MS.gene068549:intron | 45.0% | |
| GATGGAGGGTAGTAATAAGG+AGG | + | chr1.2:51008428-51008447 | None:intergenic | 45.0% | |
| GGATTATTCGGGTGCATTGA+AGG | - | chr1.2:51009131-51009150 | MS.gene068549:intron | 45.0% | |
| GGTGAAATCGACACCGTTAA+AGG | - | chr1.2:51008075-51008094 | MS.gene068549:CDS | 45.0% | |
| GTGAAAAGGGTTTAGCGCTT+TGG | - | chr1.2:51008209-51008228 | MS.gene068549:CDS | 45.0% | |
| GTTTAGGGAATGAAGAGTGG+CGG | + | chr1.2:51008372-51008391 | None:intergenic | 45.0% | |
| TCGAAGAAGCTAGAGAAAGG+AGG | - | chr1.2:51009333-51009352 | MS.gene068549:CDS | 45.0% | |
| TCGAAGAGAGGTGAGGTAAA+GGG | + | chr1.2:51008544-51008563 | None:intergenic | 45.0% | |
| TGCAAATGCACTTCGGTCTT+TGG | - | chr1.2:51008759-51008778 | MS.gene068549:intron | 45.0% | |
| TTCGAAGAGAGGTGAGGTAA+AGG | + | chr1.2:51008545-51008564 | None:intergenic | 45.0% | |
| TTCGGAGTTGAAAGAGCCAA+TGG | - | chr1.2:51008996-51009015 | MS.gene068549:intron | 45.0% | |
| ! | AGAGGATGAAGCTTTGATGG+AGG | + | chr1.2:51008443-51008462 | None:intergenic | 45.0% |
| ! | AGCTTATCGCGGTCTTTTGA+TGG | - | chr1.2:51008969-51008988 | MS.gene068549:intron | 45.0% |
| ! | GAGGATGAAGCTTTGATGGA+GGG | + | chr1.2:51008442-51008461 | None:intergenic | 45.0% |
| ! | TGGAGAGGATGAAGCTTTGA+TGG | + | chr1.2:51008446-51008465 | None:intergenic | 45.0% |
| ! | TTTAGCTCGGAAGCTTATCG+CGG | - | chr1.2:51008958-51008977 | MS.gene068549:intron | 45.0% |
| !! | GCTTTTAATTGCGCAGGTGA+AGG | - | chr1.2:51009098-51009117 | MS.gene068549:intron | 45.0% |
| !!! | CGGTCTTTTGATGGCGAATT+CGG | - | chr1.2:51008978-51008997 | MS.gene068549:intron | 45.0% |
| !!! | TCAGAACAGGGGTTTTAGCT+AGG | - | chr1.2:51008264-51008283 | MS.gene068549:CDS | 45.0% |
| !!! | TGGCGGGGTTTTGTTGAAAA+CGG | + | chr1.2:51008609-51008628 | None:intergenic | 45.0% |
| AAGCGAAGCGATACGTGTTG+TGG | - | chr1.2:51008810-51008829 | MS.gene068549:intron | 50.0% | |
| AATTGCGCAGGTGAAGGTGA+TGG | - | chr1.2:51009104-51009123 | MS.gene068549:intron | 50.0% | |
| ACGTAAGCAGGTTCGAAGAG+AGG | + | chr1.2:51008556-51008575 | None:intergenic | 50.0% | |
| AGAGAATGAGTGAGAGGGGA+AGG | + | chr1.2:51008398-51008417 | None:intergenic | 50.0% | |
| CCGAAGTGCATTTGCATCGT+TGG | + | chr1.2:51008755-51008774 | None:intergenic | 50.0% | |
| CGAAGAGAGGTGAGGTAAAG+GGG | + | chr1.2:51008543-51008562 | None:intergenic | 50.0% | |
| GAGAGGGGAAGGAGAGTTTA+GGG | + | chr1.2:51008387-51008406 | None:intergenic | 50.0% | |
| GAGGTGAGGTAAAGGGGTTA+AGG | + | chr1.2:51008537-51008556 | None:intergenic | 50.0% | |
| GCAGCAAGATCCGTTTAGCT+CGG | - | chr1.2:51008945-51008964 | MS.gene068549:intron | 50.0% | |
| GGAGTTGAAAGAGCCAATGG+AGG | - | chr1.2:51008999-51009018 | MS.gene068549:intron | 50.0% | |
| TGAGAGGGGAAGGAGAGTTT+AGG | + | chr1.2:51008388-51008407 | None:intergenic | 50.0% | |
| ! | AAGGTCTGAGGTTCGAACTC+CGG | + | chr1.2:51008122-51008141 | None:intergenic | 50.0% |
| ! | AGGATTGTGCTGGTGGTGAT+GGG | + | chr1.2:51008648-51008667 | None:intergenic | 50.0% |
| ! | AGTGCTACTGCAACGTAAGC+AGG | + | chr1.2:51008568-51008587 | None:intergenic | 50.0% |
| ! | GGGTGCATTGAAGGTGTATG+AGG | - | chr1.2:51009140-51009159 | MS.gene068549:intron | 50.0% |
| ! | TGATAGCTTTTCGGTTGCGG+TGG | + | chr1.2:51008686-51008705 | None:intergenic | 50.0% |
| AGCAGGTTCGAAGAGAGGTG+AGG | + | chr1.2:51008551-51008570 | None:intergenic | 55.0% | |
| AGTGGCGGTGAGTGAAAGAG+AGG | + | chr1.2:51008357-51008376 | None:intergenic | 55.0% | |
| TGATGGGAGTGATGACCTGG+CGG | + | chr1.2:51008632-51008651 | None:intergenic | 55.0% | |
| TGCACTTCGGTCTTTGGTCG+AGG | - | chr1.2:51008765-51008784 | MS.gene068549:intron | 55.0% | |
| ! | GAGGATTGTGCTGGTGGTGA+TGG | + | chr1.2:51008649-51008668 | None:intergenic | 55.0% |
| ! | TAGCTTTTCGGTTGCGGTGG+TGG | + | chr1.2:51008683-51008702 | None:intergenic | 55.0% |
| !! | GCAGGTGAAGGTGATGGAAG+AGG | - | chr1.2:51009110-51009129 | MS.gene068549:intron | 55.0% |
| !! | TGGTGATGGGAGTGATGACC+TGG | + | chr1.2:51008635-51008654 | None:intergenic | 55.0% |
| GGCGGTGAGTGAAAGAGAGG+TGG | + | chr1.2:51008354-51008373 | None:intergenic | 60.0% | |
| GTTGCGGTGGAGGATTGTGC+TGG | + | chr1.2:51008658-51008677 | None:intergenic | 60.0% | |
| !! | CTTTTCGGTTGCGGTGGTGG+TGG | + | chr1.2:51008680-51008699 | None:intergenic | 60.0% |
| AACAAAACCCCGCCACCGCC+AGG | - | chr1.2:51008614-51008633 | MS.gene068549:intron | 65.0% | |
| AGTGATGACCTGGCGGTGGC+GGG | + | chr1.2:51008625-51008644 | None:intergenic | 65.0% | |
| GAGTGATGACCTGGCGGTGG+CGG | + | chr1.2:51008626-51008645 | None:intergenic | 65.0% | |
| GCGGTGGAGGATTGTGCTGG+TGG | + | chr1.2:51008655-51008674 | None:intergenic | 65.0% | |
| TGGGAGTGATGACCTGGCGG+TGG | + | chr1.2:51008629-51008648 | None:intergenic | 65.0% | |
| !! | GGTTGCGGTGGTGGTGGTTG+CGG | + | chr1.2:51008674-51008693 | None:intergenic | 65.0% |
| GTGATGACCTGGCGGTGGCG+GGG | + | chr1.2:51008624-51008643 | None:intergenic | 70.0% | |
| !! | GGTGGTGGTGGTTGCGGTGG+AGG | + | chr1.2:51008668-51008687 | None:intergenic | 70.0% |
| !! | TGCGGTGGTGGTGGTTGCGG+TGG | + | chr1.2:51008671-51008690 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 51007947 | 51009377 | 51007947 | ID=MS.gene068549 |
| chr1.2 | mRNA | 51007947 | 51009377 | 51007947 | ID=MS.gene068549.t1;Parent=MS.gene068549 |
| chr1.2 | exon | 51009249 | 51009377 | 51009249 | ID=MS.gene068549.t1.exon1;Parent=MS.gene068549.t1 |
| chr1.2 | CDS | 51009249 | 51009377 | 51009249 | ID=cds.MS.gene068549.t1;Parent=MS.gene068549.t1 |
| chr1.2 | exon | 51007947 | 51008624 | 51007947 | ID=MS.gene068549.t1.exon2;Parent=MS.gene068549.t1 |
| chr1.2 | CDS | 51007947 | 51008624 | 51007947 | ID=cds.MS.gene068549.t1;Parent=MS.gene068549.t1 |
| Gene Sequence |
| Protein sequence |